BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3204680.2.1
(672 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG463356.1|BG463356 EM1_48_E07.g1_A002 Embryo 1 (EM1) So... 973 0.0
gb|BF586322.1|BF586322 FM1_27_D12.g1_A003 Floral-Induced Me... 965 0.0
gb|BF421115.1|BF421115 FM1_6_E10.g1_A003 Floral-Induced Mer... 950 0.0
gb|BE355122.1|BE355122 DG1_113_E02.g1_A002 Dark Grown 1 (DG... 940 0.0
gb|BE355151.1|BE355151 DG1_113_D02.g1_A002 Dark Grown 1 (DG... 938 0.0
gb|BG103577.1|BG103577 RHIZ2_38_C03.g1_A003 Rhizome2 (RHIZ2... 856 0.0
gb|BF421106.1|BF421106 FM1_6_D11.g1_A003 Floral-Induced Mer... 839 0.0
gb|BG158640.1|BG158640 RHIZ2_43_B07.g1_A003 Rhizome2 (RHIZ2... 795 0.0
gb|CF482017.1|CF482017 POL1_76_C05.b1_A002 Pollen Sorghum b... 763 0.0
gb|U12195.1|SBU12195 Sorghum bicolor clone BADH1 betaine al... 759 0.0
gb|BG158631.1|BG158631 RHIZ2_43_A07.g1_A003 Rhizome2 (RHIZ2... 753 0.0
gb|BG158641.1|BG158641 RHIZ2_43_B08.g1_A003 Rhizome2 (RHIZ2... 753 0.0
gb|BF421493.1|BF421493 FM1_8_D10.g1_A003 Floral-Induced Mer... 747 0.0
gb|BF421116.1|BF421116 FM1_6_E11.g1_A003 Floral-Induced Mer... 741 0.0
gb|CB924928.1|CB924928 ABA1_29_B08.b1_A012 Abscisic acid-tr... 729 0.0
gb|BG051663.1|BG051663 FM1_59_F04.g1_A003 Floral-Induced Me... 710 0.0
gb|BG240899.1|BG240899 OV1_39_F06.g1_A002 Ovary 1 (OV1) Sor... 672 0.0
gb|BG356536.1|BG356536 EM1_23_F09.g1_A002 Embryo 1 (EM1) So... 662 0.0
gb|CB928935.1|CB928935 ABA1_38_H01.b1_A012 Abscisic acid-tr... 640 0.0
gb|BF588419.1|BF588419 FM1_36_D09.g1_A003 Floral-Induced Me... 605 e-171
gb|BF588427.1|BF588427 FM1_36_E06.g1_A003 Floral-Induced Me... 571 e-161
gb|BG560788.1|BG560788 RHIZ2_64_G10.g1_A003 Rhizome2 (RHIZ2... 565 e-159
gb|BG558087.1|BG558087 RHIZ2_66_E12.g1_A003 Rhizome2 (RHIZ2... 563 e-159
gb|BG557719.1|BG557719 EM1_55_H11.g1_A002 Embryo 1 (EM1) So... 545 e-153
gb|BG487960.1|BG487960 RHIZ2_61_D10.g1_A003 Rhizome2 (RHIZ2... 398 e-109
gb|BG559002.1|BG559002 RHIZ2_53_D03.g1_A003 Rhizome2 (RHIZ2... 365 3e-099
gb|CF771940.1|CF771940 DSBF1_26_D06.g9_A010 Drought-stresse... 353 1e-095
gb|CW377044.1|CW377044 fsbb001f055d03k0 Sorghum methylation... 276 2e-072
gb|CW377043.1|CW377043 fsbb001f055d03f0 Sorghum methylation... 204 8e-051
gb|BG158652.1|BG158652 RHIZ2_43_D02.g1_A003 Rhizome2 (RHIZ2... 143 2e-032
gb|CD222832.1|CD222832 CCC1_24_A06.b1_A007 Callus culture/c... 125 6e-027
gb|BG464774.1|BG464774 EM1_34_A03.g1_A002 Embryo 1 (EM1) So... 119 3e-025
gb|U12196.1|SBU12196 Sorghum bicolor clone BADH15 betaine a... 100 3e-019
gb|CW294731.1|CW294731 104_775_11415340_116_36233_004 Sorgh... 60 3e-007
>gb|BG463356.1|BG463356 EM1_48_E07.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 680
Score = 973 bits (491), Expect = 0.0
Identities = 595/628 (94%), Gaps = 5/628 (0%)
Strand = Plus / Plus
Query: 8 ttaaggtttcggatccacttgaagagggttgcaggcttgggccagttgttagtgaaggac 67
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 17 ttaaggtttcggatccacttgaagagggttgcagacttgggccagttgttagtgaaggac 76
Query: 68 agtatgagaagattaaaaagttcatatcgaatgccaaaagccaaggtgctactattctga 127
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 77 agtatgagaagattaagaagttcatatcgaatgccaaaagcgaaggtgctactattctga 136
Query: 128 ctggaggtgttagacctgcgcatcttgagaaggggttctttattgaaccaactattatta 187
| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 137 ccggaggtgttagaccggcgcatcttgagaaggggttctttattgaaccaacaattatta 196
Query: 188 ctgatatcaccacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgcg 247
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 197 ctgatatcaccacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgtg 256
Query: 248 ttaaagaatttagcactgaagatgaagccatcgaacttgccaacgatacacagtatggtt 307
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 257 ttaaagaatttagcactgaagatgaagccattgaactggccaacgatacacagtatggtt 316
Query: 308 tggctggtgctgtaatttctggtgatcgggagcgttgccagaggttatctgaggagattg 367
|||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |
Sbjct: 317 tggctggtgctgtaatttctggtgatcgtgagcgctgccagagattatctgaggagatcg 376
Query: 368 acgctggatgcatctgggtaaactgctcgcaaccctgcttctgccaagctccctggggcg 427
| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 377 atgctggatgtatctgggtaaactgctcacaaccctgcttctgccaagctccctggggtg 436
Query: 428 ggaacaagcgcagtggatttggacgtgagcttggagaagggggcattgataactacctga 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ggaacaagcgcagtggatttggacgtgagcttggagaagggggcattgataactacctga 496
Query: 488 gcgtcaagcaagtcacggagtacatctctgatgagccgtggggatggtaccaatccccct 547
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 497 gcgtcaagcaagtcacggagtacatctctgatgagccgtggggttggtaccaatccccct 556
Query: 548 ccaagctgtaaactggcaa----gacgaaaatttgtctgtttcggtagaataaatatatc 603
||||||||||||| | || ||||||| ||||||||||| ||||||||||| |||
Sbjct: 557 ccaagctgtaaacgagaaaatggcacgaaaacttgtctgtttcattagaataaataaatc 616
Query: 604 -tcgatgctatacagaacgaacccgtgt 630
| ||||| |||||||||||||||||||
Sbjct: 617 ttggatgccatacagaacgaacccgtgt 644
>gb|BF586322.1|BF586322 FM1_27_D12.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 711
Score = 965 bits (487), Expect = 0.0
Identities = 597/632 (94%), Gaps = 5/632 (0%)
Strand = Plus / Plus
Query: 8 ttaaggtttcggatccacttgaagagggttgcaggcttgggccagttgttagtgaaggac 67
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 37 ttaaggtttcagatccacttgaagagggttgcagacttgggccagttgttagtgaaggac 96
Query: 68 agtatgagaagattaaaaagttcatatcgaatgccaaaagccaaggtgctactattctga 127
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 97 agtatgagaagattaagaagttcatatcgaatgccaaaagcgaaggtgctactattctga 156
Query: 128 ctggaggtgttagacctgcgcatcttgagaaggggttctttattgaaccaactattatta 187
| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 157 ccggaggtgttagaccgacgcatcttgagaaggggttctttattgaaccaacaattatta 216
Query: 188 ctgatatcaccacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgcg 247
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 217 ctgatatcaccacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgtg 276
Query: 248 ttaaagaatttagcactgaagatgaagccatcgaacttgccaacgatacacagtatggtt 307
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 277 ttaaagaatttagcactgaagatgaagccattgaactggccaacgatacacagtatggtt 336
Query: 308 tggctggtgctgtaatttctggtgatcgggagcgttgccagaggttatctgaggagattg 367
|||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |
Sbjct: 337 tggctggtgctgtaatttctggtgatcgtgagcgctgccagagattatctgaggagatcg 396
Query: 368 acgctggatgcatctgggtaaactgctcgcaaccctgcttctgccaagctccctggggcg 427
| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 397 atgctggatgtatctgggtaaactgctcacaaccctgcttctgccaagctccctggggtg 456
Query: 428 ggaacaagcgcagtggatttggacgtgagcttggagaagggggcattgataactacctga 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ggaacaagcgcagtggatttggacgtgagcttggagaagggggcattgataactacctga 516
Query: 488 gcgtcaagcaagtcacggagtacatctctgatgagccgtggggatggtaccaatccccct 547
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 517 gcgtcaagcaagtcacggagtacatctctgatgagccgtggggttggtaccaatccccct 576
Query: 548 ccaagctgtaaactggcaa----gacgaaaatttgtctgtttcggtagaataaatatatc 603
||||||||||||| | || ||||||| ||||||||||| ||||||||||| |||
Sbjct: 577 ccaagctgtaaacgagaaaatggcacgaaaacttgtctgtttcattagaataaataaatc 636
Query: 604 -tcgatgctatacagaacgaacccgtgtatca 634
| ||||| |||||||||||||||||||||||
Sbjct: 637 ttggatgccatacagaacgaacccgtgtatca 668
>gb|BF421115.1|BF421115 FM1_6_E10.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 697
Score = 950 bits (479), Expect = 0.0
Identities = 596/632 (94%), Gaps = 6/632 (0%)
Strand = Plus / Plus
Query: 8 ttaaggtttcggatccacttgaagagggttgcaggcttgggccagttgttagtgaaggac 67
|||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 24 ttaaggtttcagatccact-gaagagggttgcagacttgggccagttgttagtgaaggac 82
Query: 68 agtatgagaagattaaaaagttcatatcgaatgccaaaagccaaggtgctactattctga 127
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 83 agtatgagaagattaagaagttcatatcgaatgccaaaagcgaaggtgctactattctga 142
Query: 128 ctggaggtgttagacctgcgcatcttgagaaggggttctttattgaaccaactattatta 187
| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 143 ccggaggtgttagaccgacgcatcttgagaaggggttctttattgaaccaacaattatta 202
Query: 188 ctgatatcaccacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgcg 247
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 203 ctgatatcaccacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgtg 262
Query: 248 ttaaagaatttagcactgaagatgaagccatcgaacttgccaacgatacacagtatggtt 307
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 263 ttaaagaatttagcactgaagatgaagccattgaactggccaacgatacacagtatggtt 322
Query: 308 tggctggtgctgtaatttctggtgatcgggagcgttgccagaggttatctgaggagattg 367
|||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |
Sbjct: 323 tggctggtgctgtaatttctggtgatcgtgagcgctgccagagattatctgaggagatcg 382
Query: 368 acgctggatgcatctgggtaaactgctcgcaaccctgcttctgccaagctccctggggcg 427
| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 383 atgctggatgtatctgggtaaactgctcacaaccctgcttctgccaagctccctggggtg 442
Query: 428 ggaacaagcgcagtggatttggacgtgagcttggagaagggggcattgataactacctga 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ggaacaagcgcagtggatttggacgtgagcttggagaagggggcattgataactacctga 502
Query: 488 gcgtcaagcaagtcacggagtacatctctgatgagccgtggggatggtaccaatccccct 547
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 503 gcgtcaagcaagtcacggagtacatctctgatgagccgtggggttggtaccaatccccct 562
Query: 548 ccaagctgtaaactggcaa----gacgaaaatttgtctgtttcggtagaataaatatatc 603
||||||||||||| | || ||||||| ||||||||||| ||||||||||| |||
Sbjct: 563 ccaagctgtaaacgagaaaatggcacgaaaacttgtctgtttcattagaataaataaatc 622
Query: 604 -tcgatgctatacagaacgaacccgtgtatca 634
| ||||| |||||||||||||||||||||||
Sbjct: 623 ttggatgccatacagaacgaacccgtgtatca 654
>gb|BE355122.1|BE355122 DG1_113_E02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 646
Score = 940 bits (474), Expect = 0.0
Identities = 578/611 (94%), Gaps = 5/611 (0%)
Strand = Plus / Plus
Query: 29 aagagggttgcaggcttgggccagttgttagtgaaggacagtatgagaagattaaaaagt 88
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1 aagagggttgcagacttgggccagttgttagtgaaggacagtatgagaagattaagaagt 60
Query: 89 tcatatcgaatgccaaaagccaaggtgctactattctgactggaggtgttagacctgcgc 148
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||
Sbjct: 61 tcatatcgaatgccaaaagcgaaggtgctactattctgaccggaggtgttagaccggcgc 120
Query: 149 atcttgagaaggggttctttattgaaccaactattattactgatatcaccacatcaatgg 208
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 121 atcttgagaaggggttctttattgaaccaacaattattactgatatcaccacatcaatgg 180
Query: 209 aaatctggagggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactgaag 268
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 181 aaatctggagggaggaagtctttggtccagtcctgtgtgttaaagaatttagcactgaag 240
Query: 269 atgaagccatcgaacttgccaacgatacacagtatggtttggctggtgctgtaatttctg 328
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atgaagccattgaactggccaacgatacacagtatggtttggctggtgctgtaatttctg 300
Query: 329 gtgatcgggagcgttgccagaggttatctgaggagattgacgctggatgcatctgggtaa 388
||||||| ||||| |||||||| |||||||||||||| || |||||||| ||||||||||
Sbjct: 301 gtgatcgtgagcgctgccagagattatctgaggagatcgatgctggatgtatctgggtaa 360
Query: 389 actgctcgcaaccctgcttctgccaagctccctggggcgggaacaagcgcagtggatttg 448
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 361 actgctcacaaccctgcttctgccaagctccctggggtgggaacaagcgcagtggatttg 420
Query: 449 gacgtgagcttggagaagggggcattgataactacctgagcgtcaagcaagtcacggagt 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gacgtgagcttggagaagggggcattgataactacctgagcgtcaagcaagtcacggagt 480
Query: 509 acatctctgatgagccgtggggatggtaccaatccccctccaagctgtaaactggcaa-- 566
|||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||
Sbjct: 481 acatctctgatgagccgtggggttggtaccaatccccctccaagctgtaaacgagaaaat 540
Query: 567 --gacgaaaatttgtctgtttcggtagaataaatatatc-tcgatgctatacagaacgaa 623
||||||| ||||||||||| ||||||||||| ||| | ||||| ||||||||||||
Sbjct: 541 ggcacgaaaacttgtctgtttcattagaataaataaatcttggatgccatacagaacgaa 600
Query: 624 cccgtgtatca 634
|||||||||||
Sbjct: 601 cccgtgtatca 611
>gb|BE355151.1|BE355151 DG1_113_D02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 646
Score = 938 bits (473), Expect = 0.0
Identities = 577/610 (94%), Gaps = 5/610 (0%)
Strand = Plus / Plus
Query: 27 tgaagagggttgcaggcttgggccagttgttagtgaaggacagtatgagaagattaaaaa 86
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1 tgaagagggttgcagacttgggccagttgttagtgaaggacagtatgagaagattaagaa 60
Query: 87 gttcatatcgaatgccaaaagccaaggtgctactattctgactggaggtgttagacctgc 146
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||
Sbjct: 61 gttcatatcgaatgccaaaagcgaaggtgctactattctgaccggaggtgttagaccggc 120
Query: 147 gcatcttgagaaggggttctttattgaaccaactattattactgatatcaccacatcaat 206
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 121 gcatcttgagaaggggttctttattgaaccaacaattattactgatatcaccacatcaat 180
Query: 207 ggaaatctggagggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactga 266
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 181 ggaaatctggagggaggaagtctttggtccagtcctgtgtgttaaagaatttagcactga 240
Query: 267 agatgaagccatcgaacttgccaacgatacacagtatggtttggctggtgctgtaatttc 326
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agatgaagccattgaactggccaacgatacacagtatggtttggctggtgctgtaatttc 300
Query: 327 tggtgatcgggagcgttgccagaggttatctgaggagattgacgctggatgcatctgggt 386
||||||||| ||||| |||||||| |||||||||||||| || |||||||| ||||||||
Sbjct: 301 tggtgatcgtgagcgctgccagagattatctgaggagatcgatgctggatgtatctgggt 360
Query: 387 aaactgctcgcaaccctgcttctgccaagctccctggggcgggaacaagcgcagtggatt 446
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 361 aaactgctcacaaccctgcttctgccaagctccctggggtgggaacaagcgcagtggatt 420
Query: 447 tggacgtgagcttggagaagggggcattgataactacctgagcgtcaagcaagtcacgga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tggacgtgagcttggagaagggggcattgataactacctgagcgtcaagcaagtcacgga 480
Query: 507 gtacatctctgatgagccgtggggatggtaccaatccccctccaagctgtaaactggcaa 566
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||
Sbjct: 481 gtacatctctgatgagccgtggggttggtaccaatccccctccaagctgtaaacgagaaa 540
Query: 567 ----gacgaaaatttgtctgtttcggtagaataaatatatc-tcgatgctatacagaacg 621
||||||| ||||||||||| ||||||||||| ||| | ||||| ||||||||||
Sbjct: 541 atggcacgaaaacttgtctgtttcattagaataaataaatcttggatgccatacagaacg 600
Query: 622 aacccgtgta 631
||||||||||
Sbjct: 601 aacccgtgta 610
>gb|BG103577.1|BG103577 RHIZ2_38_C03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 612
Score = 856 bits (432), Expect = 0.0
Identities = 536/569 (94%), Gaps = 5/569 (0%)
Strand = Plus / Plus
Query: 71 atgagaagattaaaaagttcatatcgaatgccaaaagccaaggtgctactattctgactg 130
||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 1 atgagaagattaagaagttcatatcgaatgccaaaagcgaaggtgctactattctgaccg 60
Query: 131 gaggtgttagacctgcgcatcttgagaaggggttctttattgaaccaactattattactg 190
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 61 gaggtgttagaccgacgcatcttgagaaggggttctttattgaaccaacaattattactg 120
Query: 191 atatcaccacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgcgtta 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 121 atatcaccacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgtgtta 180
Query: 251 aagaatttagcactgaagatgaagccatcgaacttgccaacgatacacagtatggtttgg 310
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 181 aagaatttagcactgaagatgaagccattgaactggccaacgatacacagtatggtttgg 240
Query: 311 ctggtgctgtaatttctggtgatcgggagcgttgccagaggttatctgaggagattgacg 370
||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| || |
Sbjct: 241 ctggtgctgtaatttctggtgatcgtgagcgctgccagagattatctgaggagatcgatg 300
Query: 371 ctggatgcatctgggtaaactgctcgcaaccctgcttctgccaagctccctggggcggga 430
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 301 ctggatgtatctgggtaaactgctcacaaccctgcttctgccaagctccctggggtggga 360
Query: 431 acaagcgcagtggatttggacgtgagcttggagaagggggcattgataactacctgagcg 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 acaagcgcagtggatttggacgtgagcttggagaagggggcattgataactacctgagcg 420
Query: 491 tcaagcaagtcacggagtacatctctgatgagccgtggggatggtaccaatccccctcca 550
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 421 tcaagcaagtcacggagtacatctctgatgagccgtggggttggtaccaatccccctcca 480
Query: 551 agctgtaaactggcaa----gacgaaaatttgtctgtttcggtagaataaatatatc-tc 605
|||||||||| | || ||||||| ||||||||||| ||||||||||| ||| |
Sbjct: 481 agctgtaaacgagaaaatggcacgaaaacttgtctgtttcattagaataaataaatcttg 540
Query: 606 gatgctatacagaacgaacccgtgtatca 634
||||| |||||||||||||||||||||||
Sbjct: 541 gatgccatacagaacgaacccgtgtatca 569
>gb|BF421106.1|BF421106 FM1_6_D11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 624
Score = 839 bits (423), Expect = 0.0
Identities = 542/580 (93%), Gaps = 5/580 (0%)
Strand = Plus / Plus
Query: 60 tgaaggacagtatgagaagattaaaaagttcatatcgaatgccaaaagccaaggtgctac 119
||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 1 tgaagtacagtatgagaagattaagaagttcatatcgaatgccaaaagcgaaggtgctac 60
Query: 120 tattctgactggaggtgttagacctgcgcatcttgagaaggggttctttattgaaccaac 179
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 61 tattctgaccggaggtgttagactgacgcatcttgagaaggggttctttattgaaccaac 120
Query: 180 tattattactgatatcaccacatcaatggaaatctggagggaggaagtctttggtccagt 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aattattactgatatcaccacatcaatggaaatctggagggaggaagtctttggtccagt 180
Query: 240 cctgtgcgttaaagaatttagcactgaagatgaagccatcgaacttgccaacgatacaca 299
|||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 181 cctgtgtgttaaagaatttagcactgaagatgaagccattgaactggccaacgatacaca 240
Query: 300 gtatggtttggctggtgctgtaatttctggtgatcgggagcgttgccagaggttatctga 359
||||||||||| |||||||||||||||||||||||| ||||| |||||||| |||| |||
Sbjct: 241 gtatggtttggatggtgctgtaatttctggtgatcgtgagcgctgccagagattatatga 300
Query: 360 ggagattgacgctggatgcatctgggtaaactgctcgcaaccctgcttctgccaagctcc 419
|||||| || |||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 301 ggagatcgatgctggatgtatctgggtaaactgctcacaaccctgcttctgccaagctcc 360
Query: 420 ctggggcgggaacaagcgcagtggatttggacgtgagcttggagaagggggcattgataa 479
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gtggggtgggaacaagcgcagtggatttggacgtgagcttggagaagggggcattgataa 420
Query: 480 ctacctgagcgtcaagcaagtcacggagtacatctctgatgagccgtggggatggtacca 539
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 421 ctacctgagcgtcaagcaagtcacggagtacatctctgatgagccgtggggttggtacca 480
Query: 540 atccccctccaagctgtaaactggcaa----gacgaaaatttgtctgtttcggtagaata 595
||||||||||||||||||||| | || ||||||| ||||||||||| |||||||
Sbjct: 481 atccccctccaagctgtaaacgagaaaagggcacgaaaacttgtctgtttcattagaata 540
Query: 596 aatatatc-tcgatgctatacagaacgaacccgtgtatca 634
|||| ||| | ||||| |||||||||||||||||||||||
Sbjct: 541 aataaatcttggatgccatacagaacgaacccgtgtatca 580
>gb|BG158640.1|BG158640 RHIZ2_43_B07.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 579
Score = 795 bits (401), Expect = 0.0
Identities = 499/530 (94%), Gaps = 5/530 (0%)
Strand = Plus / Plus
Query: 110 aaggtgctactattctgactggaggtgttagacctgcgcatcttgagaaggggttcttta 169
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 7 aaggtgctactattctgaccggaggtgttagaccgacgcatcttgagaaggggttcttta 66
Query: 170 ttgaaccaactattattactgatatcaccacatcaatggaaatctggagggaggaagtct 229
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 ttgaaccaacaattattactgatatcaccacatcaatggaaatctggagggaggaagtct 126
Query: 230 ttggtccagtcctgtgcgttaaagaatttagcactgaagatgaagccatcgaacttgcca 289
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 127 ttggtccagtcctgtgtgttaaagaatttagcactgaagatgaagccattgaactggcca 186
Query: 290 acgatacacagtatggtttggctggtgctgtaatttctggtgatcgggagcgttgccaga 349
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 187 acgatacacagtatggtttggctggtgctgtaatttctggtgatcgtgagcgctgccaga 246
Query: 350 ggttatctgaggagattgacgctggatgcatctgggtaaactgctcgcaaccctgcttct 409
| |||||||||||||| || |||||||| ||||||||||||||||| |||||||||||||
Sbjct: 247 gattatctgaggagatcgatgctggatgtatctgggtaaactgctcacaaccctgcttct 306
Query: 410 gccaagctccctggggcgggaacaagcgcagtggatttggacgtgagcttggagaagggg 469
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gccaagctccctggggtgggaacaagcgcagtggatttggacgtgagcttggagaagggg 366
Query: 470 gcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatgagccgtggg 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatgagccgtggg 426
Query: 530 gatggtaccaatccccctccaagctgtaaactggcaa----gacgaaaatttgtctgttt 585
| ||||||||||||||||||||||||||||| | || ||||||| ||||||||||
Sbjct: 427 gttggtaccaatccccctccaagctgtaaacgagaaaatggcacgaaaacttgtctgttt 486
Query: 586 cggtagaataaatatatc-tcgatgctatacagaacgaacccgtgtatca 634
| ||||||||||| ||| | ||||| |||||||||||||||||||||||
Sbjct: 487 cattagaataaataaatcttggatgccatacagaacgaacccgtgtatca 536
>gb|CF482017.1|CF482017 POL1_76_C05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_76_C05_A002 3', mRNA sequence
Length = 591
Score = 763 bits (385), Expect = 0.0
Identities = 480/510 (94%), Gaps = 5/510 (0%)
Strand = Plus / Plus
Query: 130 ggaggtgttagacctgcgcatcttgagaaggggttctttattgaaccaactattattact 189
|||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 5 ggaggtgttagaccggcgcatcttgagaaggggttctttattgagccaacaattattact 64
Query: 190 gatatcaccacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgcgtt 249
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 65 gatatcaccacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgtgtt 124
Query: 250 aaagaatttagcactgaagatgaagccatcgaacttgccaacgatacacagtatggtttg 309
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 125 aaagaatttagcactgaagatgaagccattgaactggccaacgatacacagtatggtttg 184
Query: 310 gctggtgctgtaatttctggtgatcgggagcgttgccagaggttatctgaggagattgac 369
|||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| ||
Sbjct: 185 gctggtgctgtaatttctggtgatcgtgagcgctgccagagattatctgaggagatcgat 244
Query: 370 gctggatgcatctgggtaaactgctcgcaaccctgcttctgccaagctccctggggcggg 429
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 245 gctggatgtatctgggtaaactgctctcaaccctgcttctgccaagctccctggggtggg 304
Query: 430 aacaagcgcagtggatttggacgtgagcttggagaagggggcattgataactacctgagc 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aacaagcgcagtggatttggacgtgagcttggagaagggggcattgataactacctgagc 364
Query: 490 gtcaagcaagtcacggagtacatctctgatgagccgtggggatggtaccaatccccctcc 549
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 365 gtcaagcaagtcacggagtacatctctgatgagccgtggggttggtaccaatccccctcc 424
Query: 550 aagctgtaaactggcaa----gacgaaaatttgtctgtttcggtagaataaatatatc-t 604
||||||||||| | || ||||||| ||||||||||| ||||||||||| ||| |
Sbjct: 425 aagctgtaaacgagaaaatggcacgaaaacttgtctgtttcattagaataaataaatctt 484
Query: 605 cgatgctatacagaacgaacccgtgtatca 634
||||| |||||||||||||||||||||||
Sbjct: 485 ggatgccatacagaacgaacccgtgtatca 514
>gb|U12195.1|SBU12195 Sorghum bicolor clone BADH1 betaine aldehyde dehydrogenase mRNA,
partial cds
Length = 1377
Score = 759 bits (383), Expect = 0.0
Identities = 582/635 (91%), Gaps = 15/635 (2%)
Strand = Plus / Plus
Query: 8 ttaaggtttcggatccacttgaagagggttgcaggcttgggccagttgttagtgaaggac 67
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 683 ttaaggtttcggatccacttgaagagggttgcagacttgggccagttgttagtgaaggac 742
Query: 68 agtatgagaagattaaaaagttcatatcgaatgccaaaagccaaggtgctactattctga 127
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 743 agtatgagaagattaagaagttcatatcgaatgccaaaagcgaaggtgctactattctga 802
Query: 128 ctggaggtgttagacctgcgcatcttgagaaggggttctttattgaaccaactattatta 187
| |||||| | ||| | ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 803 ccggaggtttaagaaccgcgcatcttgagaaggggttctttattgaaccaacaattatta 862
Query: 188 ctgatatcaccacatcaatggaaat-ctggagggaggaagtctttggtccagtcctgtgc 246
||||||||||||||||||||||||| |||||||||||| ||||| |||| |||| ||||
Sbjct: 863 ctgatatcaccacatcaatggaaattctggagggagga-gtctt-ggtc-agtc-tgtgt 918
Query: 247 gttaaagaatttagcactgaagatgaagccatcgaacttgccaacgatacacagtatggt 306
||||| || |||||||||||||||||||||| ||||| |||||| ||||||||||||||
Sbjct: 919 gttaa-ga--ttagcactgaagatgaagccattgaactggccaaccatacacagtatggt 975
Query: 307 ttggctggtgctgtaatttctggtgatcgggagcgttgccagaggttatctgaggagatt 366
|||||||||||||| ||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct: 976 ttggctggtgctgtcctttctggtgatcgtgagcgctgccagagattatctgaggagatc 1035
Query: 367 gacgctggatgcatctgggtaaactgctcgcaaccctgcttctgccaagctccctggggc 426
|| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1036 gatgctggatgtatctgggtaaactgctcacaaccctgcttctgccaagctccctggggt 1095
Query: 427 gggaacaagcgcagtggatttggacgtgagcttggagaagggggcattgataactacctg 486
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1096 gggaacaagcgcagtgattttggacgtgagcttggagaagggggcattgataactacctg 1155
Query: 487 agcgtcaagcaagtcacggagtacatctctgatgagccgtggggatggtaccaat-cccc 545
|||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||
Sbjct: 1156 agcgtcaagcaagtcacggagtacatctctgatgagaagtggggttggtaccaatccccc 1215
Query: 546 ctccaagctgtaaactggcaa----gacgaaaatttgtctgtttcggtagaat-aaatat 600
||||||||||||||| | || ||||||| ||||||||||| |||||| |||||
Sbjct: 1216 ctccaagctgtaaacgagaaaatggcacgaaaacttgtctgtttcattagaataaaataa 1275
Query: 601 atc-tcgatgctatacagaacgaacccgtgtatca 634
||| | ||||| |||||||||||||||||||||||
Sbjct: 1276 atcttggatgccatacagaacgaacccgtgtatca 1310
>gb|BG158631.1|BG158631 RHIZ2_43_A07.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 549
Score = 753 bits (380), Expect = 0.0
Identities = 475/505 (94%), Gaps = 5/505 (0%)
Strand = Plus / Plus
Query: 135 tgttagacctgcgcatcttgagaaggggttctttattgaaccaactattattactgatat 194
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 tgttagaccgacgcatcttgagaaggggttctttattgaaccaacaattattactgatat 60
Query: 195 caccacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgcgttaaaga 254
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 61 caccacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgtgttaaaga 120
Query: 255 atttagcactgaagatgaagccatcgaacttgccaacgatacacagtatggtttggctgg 314
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 121 atttagcactgaagatgaagccattgaactggccaacgatacacagtatggtttggctgg 180
Query: 315 tgctgtaatttctggtgatcgggagcgttgccagaggttatctgaggagattgacgctgg 374
||||||||||||||||||||| ||||| |||||||| |||||||||||||| || |||||
Sbjct: 181 tgctgtaatttctggtgatcgtgagcgctgccagagattatctgaggagatcgatgctgg 240
Query: 375 atgcatctgggtaaactgctcgcaaccctgcttctgccaagctccctggggcgggaacaa 434
||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 241 atgtatctgggtaaactgctcacaaccctgcttctgccaagctccctggggtgggaacaa 300
Query: 435 gcgcagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaa 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gcgcagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaa 360
Query: 495 gcaagtcacggagtacatctctgatgagccgtggggatggtaccaatccccctccaagct 554
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 361 gcaagtcacggagtacatctctgatgagccgtggggttggtaccaatccccctccaagct 420
Query: 555 gtaaactggcaa----gacgaaaatttgtctgtttcggtagaataaatatatc-tcgatg 609
|||||| | || ||||||| ||||||||||| ||||||||||| ||| | ||||
Sbjct: 421 gtaaacgagaaaatggcacgaaaacttgtctgtttcattagaataaataaatcttggatg 480
Query: 610 ctatacagaacgaacccgtgtatca 634
| |||||||||||||||||||||||
Sbjct: 481 ccatacagaacgaacccgtgtatca 505
>gb|BG158641.1|BG158641 RHIZ2_43_B08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 548
Score = 753 bits (380), Expect = 0.0
Identities = 475/505 (94%), Gaps = 5/505 (0%)
Strand = Plus / Plus
Query: 135 tgttagacctgcgcatcttgagaaggggttctttattgaaccaactattattactgatat 194
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 tgttagaccgacgcatcttgagaaggggttctttattgaaccaacaattattactgatat 60
Query: 195 caccacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgcgttaaaga 254
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 61 caccacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgtgttaaaga 120
Query: 255 atttagcactgaagatgaagccatcgaacttgccaacgatacacagtatggtttggctgg 314
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 121 atttagcactgaagatgaagccattgaactggccaacgatacacagtatggtttggctgg 180
Query: 315 tgctgtaatttctggtgatcgggagcgttgccagaggttatctgaggagattgacgctgg 374
||||||||||||||||||||| ||||| |||||||| |||||||||||||| || |||||
Sbjct: 181 tgctgtaatttctggtgatcgtgagcgctgccagagattatctgaggagatcgatgctgg 240
Query: 375 atgcatctgggtaaactgctcgcaaccctgcttctgccaagctccctggggcgggaacaa 434
||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 241 atgtatctgggtaaactgctcacaaccctgcttctgccaagctccctggggtgggaacaa 300
Query: 435 gcgcagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaa 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gcgcagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaa 360
Query: 495 gcaagtcacggagtacatctctgatgagccgtggggatggtaccaatccccctccaagct 554
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 361 gcaagtcacggagtacatctctgatgagccgtggggttggtaccaatccccctccaagct 420
Query: 555 gtaaactggcaa----gacgaaaatttgtctgtttcggtagaataaatatatc-tcgatg 609
|||||| | || ||||||| ||||||||||| ||||||||||| ||| | ||||
Sbjct: 421 gtaaacgagaaaatggcacgaaaacttgtctgtttcattagaataaataaatcttggatg 480
Query: 610 ctatacagaacgaacccgtgtatca 634
| |||||||||||||||||||||||
Sbjct: 481 ccatacagaacgaacccgtgtatca 505
>gb|BF421493.1|BF421493 FM1_8_D10.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 557
Score = 747 bits (377), Expect = 0.0
Identities = 478/510 (93%), Gaps = 5/510 (0%)
Strand = Plus / Plus
Query: 130 ggaggtgttagacctgcgcatcttgagaaggggttctttattgaaccaactattattact 189
|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 5 ggaggtgttagaccgacgcatcttgagaaggggttctttattgaaccaacaattattact 64
Query: 190 gatatcaccacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgcgtt 249
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 65 gatatcaccacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgtgtt 124
Query: 250 aaagaatttagcactgaagatgaagccatcgaacttgccaacgatacacagtatggtttg 309
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 125 aaagaatttagcactgaagatgaagccattgaactggccaacgatacacagtatggtttg 184
Query: 310 gctggtgctgtaatttctggtgatcgggagcgttgccagaggttatctgaggagattgac 369
|||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| ||
Sbjct: 185 gctggtgctgtaatttctggtgatcgtgagcgctgccagagattatctgaggagatcgat 244
Query: 370 gctggatgcatctgggtaaactgctcgcaaccctgcttctgccaagctccctggggcggg 429
|||||||| ||||||||||||||||| |||||||||||| ||||||||||||||| |||
Sbjct: 245 gctggatgtatctgggtaaactgctcacaaccctgcttcgtccaagctccctggggtggg 304
Query: 430 aacaagcgcagtggatttggacgtgagcttggagaagggggcattgataactacctgagc 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aacaagcgcagtggatttggacgtgagcttggagaagggggcattgataactacctgagc 364
Query: 490 gtcaagcaagtcacggagtacatctctgatgagccgtggggatggtaccaatccccctcc 549
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 365 gtcaagcaagtcacggagtacatctctgatgagccgtggggttggtaccaatccccctcc 424
Query: 550 aagctgtaaactggcaa----gacgaaaatttgtctgtttcggtagaataaatatatc-t 604
||||||||||| | || ||||||| ||||||||||| ||||||||||| ||| |
Sbjct: 425 aagctgtaaacgagaaaatggcacgaaaacttgtctgtttcattagaataaataaatctt 484
Query: 605 cgatgctatacagaacgaacccgtgtatca 634
||||| |||||||||||||||||||||||
Sbjct: 485 ggatgccatacagaacgaacccgtgtatca 514
>gb|BF421116.1|BF421116 FM1_6_E11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 558
Score = 741 bits (374), Expect = 0.0
Identities = 484/519 (93%), Gaps = 5/519 (0%)
Strand = Plus / Plus
Query: 121 attctgactggaggtgttagacctgcgcatcttgagaaggggttctttattgaaccaact 180
|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1 attctgaccggaggtgttagacggacgcatcttgagaaggggttctttattgaaccaaca 60
Query: 181 attattactgatatcaccacatcaatggaaatctggagggaggaagtctttggtccagtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attattactgatatcaccacatcaatggaaatctggagggaggaagtctttggtccagtc 120
Query: 241 ctgtgcgttaaagaatttagcactgaagatgaagccatcgaacttgccaacgatacacag 300
||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 121 ctgtgtgttaaagaatttagcactgaagatgaagccattgaactggccaacgatacacag 180
Query: 301 tatggtttggctggtgctgtaatttctggtgatcgggagcgttgccagaggttatctgag 360
||||||||||||||||||||||||||||||||||| ||||| |||||||| |||| ||||
Sbjct: 181 tatggtttggctggtgctgtaatttctggtgatcgtgagcgctgccagagattatatgag 240
Query: 361 gagattgacgctggatgcatctgggtaaactgctcgcaaccctgcttctgccaagctccc 420
||||| || |||||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 241 gagatcgatgctggatgtatctgggtaaagtgctcacaaccctgcttctgccaagctccc 300
Query: 421 tggggcgggaacaagcgcagtggatttggacgtgagcttggagaagggggcattgataac 480
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tggggtgggaacaagcgcagtggatttggacgtgagcttggagaagggggcattgataac 360
Query: 481 tacctgagcgtcaagcaagtcacggagtacatctctgatgagccgtggggatggtaccaa 540
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 361 tacctgagcgtcaagcaagtcacggagtacatctatgatgagccgtggggttggtaccaa 420
Query: 541 tccccctccaagctgtaaactggcaa----gacgaaaatttgtctgtttcggtagaataa 596
|||||||||||||||||||| | || ||||||| ||||||||||| ||||||||
Sbjct: 421 tccccctccaagctgtaaacgagaaaatggcacgaaaacttgtctgtttcattagaataa 480
Query: 597 atatatc-tcgatgctatacagaacgaacccgtgtatca 634
||| ||| | ||||| |||||||||||||||||||||||
Sbjct: 481 ataaatcttggatgccatacagaacgaacccgtgtatca 519
>gb|CB924928.1|CB924928 ABA1_29_B08.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_29_B08_A012 3', mRNA sequence
Length = 573
Score = 729 bits (368), Expect = 0.0
Identities = 475/509 (93%), Gaps = 5/509 (0%)
Strand = Plus / Plus
Query: 131 gaggtgttagacctgcgcatcttgagaaggggttctttattgaaccaactattattactg 190
||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 1 gaggtgttagaccagcgcatcttgagaaagggttctttattgaaccaacaattattactg 60
Query: 191 atatcaccacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgcgtta 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 61 atatcaccacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgtgtta 120
Query: 251 aagaatttagcactgaagatgaagccatcgaacttgccaacgatacacagtatggtttgg 310
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 121 aagaatttagcactgaagatgaagccattgaactggccaacgatacacagtatggtttgg 180
Query: 311 ctggtgctgtaatttctggtgatcgggagcgttgccagaggttatctgaggagattgacg 370
||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| || |
Sbjct: 181 ctggtgctgtaatttctggtgatcgtgagcgctgccagagattatctgaggagatagatg 240
Query: 371 ctggatgcatctgggtaaactgctcgcaaccctgcttctgccaagctccctggggcggga 430
||||||| || |||||||||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct: 241 ctggatgtatttgggtaaactgctcacaaccctgcttttgccaagctccctggggtggga 300
Query: 431 acaagcgcagtggatttggacgtgagcttggagaagggggcattgataactacctgagcg 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 acaagcgcagtggatttggacgtgagcttggagaagggggcattgataactacctgagcg 360
Query: 491 tcaagcaagtcacggagtacatctctgatgagccgtggggatggtaccaatccccctcca 550
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 361 tcaagcaagtcacggagtacatctttgatgagccgtggggttggtaccaatccccctcca 420
Query: 551 agctgtaaactggcaa----gacgaaaatttgtctgtttcggtagaataaatatatc-tc 605
|||||||||| | || ||||||| || |||||||| ||||||||||| ||| |
Sbjct: 421 agctgtaaacgagaaaatggcacgaaaacttctctgtttcattagaataaataaatcttg 480
Query: 606 gatgctatacagaacgaacccgtgtatca 634
||||| |||||||||||||||||||||||
Sbjct: 481 gatgccatacagaacgaacccgtgtatca 509
>gb|BG051663.1|BG051663 FM1_59_F04.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 520
Score = 710 bits (358), Expect = 0.0
Identities = 447/475 (94%), Gaps = 5/475 (1%)
Strand = Plus / Plus
Query: 165 ctttattgaaccaactattattactgatatcaccacatcaatggaaatctggagggagga 224
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctttattgaaccaacaattattactgatatcaccacatcaatggaaatctggagggagga 60
Query: 225 agtctttggtccagtcctgtgcgttaaagaatttagcactgaagatgaagccatcgaact 284
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 61 agtctttggtccagtcctgtgtgttaaagaatttagcactgaagatgaagccattgaact 120
Query: 285 tgccaacgatacacagtatggtttggctggtgctgtaatttctggtgatcgggagcgttg 344
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 121 ggccaacgatacacagtatggtttggctggtgctgtaatttctggtgatcgtgagcgctg 180
Query: 345 ccagaggttatctgaggagattgacgctggatgcatctgggtaaactgctcgcaaccctg 404
|||||| |||||||||||||| || |||||||| ||||||||||||||||| ||||||||
Sbjct: 181 ccagagattatctgaggagatcgatgctggatgtatctgggtaaactgctcacaaccctg 240
Query: 405 cttctgccaagctccctggggcgggaacaagcgcagtggatttggacgtgagcttggaga 464
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cttctgccaagctccctggggtgggaacaagcgcagtggatttggacgtgagcttggaga 300
Query: 465 agggggcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatgagcc 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agggggcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatgagcc 360
Query: 525 gtggggatggtaccaatccccctccaagctgtaaactggcaa----gacgaaaatttgtc 580
|||||| ||||||||||||||||||||||||||||| | || ||||||| |||||
Sbjct: 361 gtggggttggtaccaatccccctccaagctgtaaacgagaaaatggcacgaaaacttgtc 420
Query: 581 tgtttcggtagaataaatatatc-tcgatgctatacagaacgaacccgtgtatca 634
|||||| ||||||||||| ||| | ||||| |||||||||||||||||||||||
Sbjct: 421 tgtttcattagaataaataaatcttggatgccatacagaacgaacccgtgtatca 475
>gb|BG240899.1|BG240899 OV1_39_F06.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 496
Score = 672 bits (339), Expect = 0.0
Identities = 425/452 (94%), Gaps = 5/452 (1%)
Strand = Plus / Plus
Query: 188 ctgatatcaccacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgcg 247
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1 ctgatatcaccacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgtg 60
Query: 248 ttaaagaatttagcactgaagatgaagccatcgaacttgccaacgatacacagtatggtt 307
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 61 ttaaagaatttagcactgaagatgaagccattgaactggccaacgatacacagtatggtt 120
Query: 308 tggctggtgctgtaatttctggtgatcgggagcgttgccagaggttatctgaggagattg 367
|||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |
Sbjct: 121 tggctggtgctgtaatttctggtgatcgtgagcgctgccagagattatctgaggagatcg 180
Query: 368 acgctggatgcatctgggtaaactgctcgcaaccctgcttctgccaagctccctggggcg 427
| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 181 atgctggatgtatctgggtaaactgctcacaaccctgcttctgccaagctccctggggtg 240
Query: 428 ggaacaagcgcagtggatttggacgtgagcttggagaagggggcattgataactacctga 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggaacaagcgcagtggatttggacgtgagcttggagaagggggcattgataactacctga 300
Query: 488 gcgtcaagcaagtcacggagtacatctctgatgagccgtggggatggtaccaatccccct 547
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 301 gcgtcaagcaagtcacggagtacatctctgatgagccgtggggttggtaccaatccccct 360
Query: 548 ccaagctgtaaactggcaa----gacgaaaatttgtctgtttcggtagaataaatatatc 603
||||||||||||| | || ||||||| ||||||||||| ||||||||||| |||
Sbjct: 361 ccaagctgtaaacgagaaaatggcacgaaaacttgtctgtttcattagaataaataaatc 420
Query: 604 -tcgatgctatacagaacgaacccgtgtatca 634
| ||||| |||||||||||||||||||||||
Sbjct: 421 ttggatgccatacagaacgaacccgtgtatca 452
>gb|BG356536.1|BG356536 EM1_23_F09.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 484
Score = 662 bits (334), Expect = 0.0
Identities = 420/447 (93%), Gaps = 5/447 (1%)
Strand = Plus / Plus
Query: 189 tgatatcaccacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgcgt 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1 tgatatcaccacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgtgt 60
Query: 249 taaagaatttagcactgaagatgaagccatcgaacttgccaacgatacacagtatggttt 308
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 61 taaagaatttagcactgaagatgaagccattgaactggccaacgatacacagtatggttt 120
Query: 309 ggctggtgctgtaatttctggtgatcgggagcgttgccagaggttatctgaggagattga 368
||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| ||
Sbjct: 121 ggctggtgctgtaatttctggtgatcgtgagcgctgccagagattatctgaggagatcga 180
Query: 369 cgctggatgcatctgggtaaactgctcgcaaccctgcttctgccaagctccctggggcgg 428
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 181 tgctggatgtatctgggtaaactgctcacaaccctgcttctgccaagctccctggggtgg 240
Query: 429 gaacaagcgcagtggatttggacgtgagcttggagaagggggcattgataactacctgag 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaacaagcgcagtggatttggacgtgagcttggagaagggggcattgataactacctgag 300
Query: 489 cgtcaagcaagtcacggagtacatctctgatgagccgtggggatggtaccaatccccctc 548
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 301 cgtcaagcaagtcacggagtacatctctgatgagccgtggggttggtaccaatccccctc 360
Query: 549 caagctgtaaactggcaa----gacgaaaatttgtctgtttcggtagaataaatatatc- 603
|||||||||||| | || ||||||| ||||||||||| ||||||||||| |||
Sbjct: 361 caagctgtaaacgagaaaatggcacgaaaacttgtctgtttcattagaataaataaatct 420
Query: 604 tcgatgctatacagaacgaacccgtgt 630
| ||||| |||||||||||||||||||
Sbjct: 421 tggatgccatacagaacgaacccgtgt 447
>gb|CB928935.1|CB928935 ABA1_38_H01.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_38_H01_A012 3', mRNA sequence
Length = 565
Score = 640 bits (323), Expect = 0.0
Identities = 412/440 (93%), Gaps = 5/440 (1%)
Strand = Plus / Plus
Query: 200 catcaatggaaatctggagggaggaagtctttggtccagtcctgtgcgttaaagaattta 259
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 catcaatggaaatctggagggaggaagtctttggtccagtcctgtgtgttaaagaattta 60
Query: 260 gcactgaagatgaagccatcgaacttgccaacgatacacagtatggtttggctggtgctg 319
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 61 gcactgaagatgaagccattgaactggccaacgatacacagtatggtttggctggtgctg 120
Query: 320 taatttctggtgatcgggagcgttgccagaggttatctgaggagattgacgctggatgca 379
|||||||||||||||| ||||| |||||||| |||||||||||||| || |||||||| |
Sbjct: 121 taatttctggtgatcgtgagcgctgccagagattatctgaggagatagatgctggatgta 180
Query: 380 tctgggtaaactgctcgcaaccctgcttctgccaagctccctggggcgggaacaagcgca 439
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 181 tctgggtaaactgctcacaaccctgcttctgccaagctccctggggtgggaacaagcgca 240
Query: 440 gtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagcaag 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagcaag 300
Query: 500 tcacggagtacatctctgatgagccgtggggatggtaccaatccccctccaagctgtaaa 559
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 301 tcacggagtacatctctgatgagccgtggggttggtaccaatccccctccaagctgtaaa 360
Query: 560 ctggcaa----gacgaaaatttgtctgtttcggtagaataaatatatc-tcgatgctata 614
| | || ||||||| || |||||||| ||||||||||| ||| | ||||| |||
Sbjct: 361 cgagaaaatggcacgaaaacttctctgtttcattagaataaataaatcttggatgccata 420
Query: 615 cagaacgaacccgtgtatca 634
||||||||||||||||||||
Sbjct: 421 cagaacgaacccgtgtatca 440
>gb|BF588419.1|BF588419 FM1_36_D09.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 539
Score = 605 bits (305), Expect = e-171
Identities = 391/418 (93%), Gaps = 5/418 (1%)
Strand = Plus / Plus
Query: 222 ggaagtctttggtccagtcctgtgcgttaaagaatttagcactgaagatgaagccatcga 281
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 1 ggaagtctttggtccagtcctgtgtgttaaagaatttagcactgaagatgaagccattga 60
Query: 282 acttgccaacgatacacagtatggtttggctggtgctgtaatttctggtgatcgggagcg 341
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 61 actggccaacgatacacagtatggtttggctggtgctgtaatttctggtgatcgtgagcg 120
Query: 342 ttgccagaggttatctgaggagattgacgctggatgcatctgggtaaactgctcgcaacc 401
|||||||| |||||||||||||| || |||||||| ||||||||||||||||| |||||
Sbjct: 121 ctgccagagattatctgaggagatcgatgctggatgtatctgggtaaactgctcacaacc 180
Query: 402 ctgcttctgccaagctccctggggcgggaacaagcgcagtggatttggacgtgagcttgg 461
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 181 ctgcttctgccaagctccctggggtgggaacaagcgcagtggatttggacgtgagcttgg 240
Query: 462 agaagggggcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatga 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agaagggggcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatga 300
Query: 522 gccgtggggatggtaccaatccccctccaagctgtaaactggcaa----gacgaaaattt 577
||||||||| ||||||||||||||||||||||||||||| | || ||||||| ||
Sbjct: 301 gccgtggggttggtaccaatccccctccaagctgtaaacgagaaaatggcacgaaaactt 360
Query: 578 gtctgtttcggtagaataaatatatc-tcgatgctatacagaacgaacccgtgtatca 634
||||||||| ||||||||||| ||| | ||||| |||||||||||||||||||||||
Sbjct: 361 gtctgtttcattagaataaataaatcttggatgccatacagaacgaacccgtgtatca 418
>gb|BF588427.1|BF588427 FM1_36_E06.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 561
Score = 571 bits (288), Expect = e-161
Identities = 374/401 (93%), Gaps = 5/401 (1%)
Strand = Plus / Plus
Query: 239 tcctgtgcgttaaagaatttagcactgaagatgaagccatcgaacttgccaacgatacac 298
||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 1 tcctgtgtgttaaagaatttagcactgaagatgaagccattgaactggccaacgatacac 60
Query: 299 agtatggtttggctggtgctgtaatttctggtgatcgggagcgttgccagaggttatctg 358
||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct: 61 agtatggtttggctggtgctgtaatttctggtgatcgtgagcgctgccagagattatctg 120
Query: 359 aggagattgacgctggatgcatctgggtaaactgctcgcaaccctgcttctgccaagctc 418
||||||| || |||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 121 aggagatcgatgctggatgtatctgggtaaactgctcacaaccctgcttctgccaagctc 180
Query: 419 cctggggcgggaacaagcgcagtggatttggacgtgagcttggagaagggggcattgata 478
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cctggggtgggaacaagcgcagtggatttggacgtgagcttggagaagggggcattgata 240
Query: 479 actacctgagcgtcaagcaagtcacggagtacatctctgatgagccgtggggatggtacc 538
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 241 actacctgagcgtcaagcaagtcacggagtacatctctgatgagccgtggggttggtacc 300
Query: 539 aatccccctccaagctgtaaactggcaa----gacgaaaatttgtctgtttcggtagaat 594
|||||||||||||||||||||| | || ||||||| ||||||||||| ||||||
Sbjct: 301 aatccccctccaagctgtaaacgagaaaatggcacgaaaacttgtctgtttcattagaat 360
Query: 595 aaatatatc-tcgatgctatacagaacgaacccgtgtatca 634
||||| ||| | ||||| |||||||||||||||||||||||
Sbjct: 361 aaataaatcttggatgccatacagaacgaacccgtgtatca 401
>gb|BG560788.1|BG560788 RHIZ2_64_G10.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 557
Score = 565 bits (285), Expect = e-159
Identities = 371/398 (93%), Gaps = 5/398 (1%)
Strand = Plus / Plus
Query: 242 tgtgcgttaaagaatttagcactgaagatgaagccatcgaacttgccaacgatacacagt 301
|||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 1 tgtgtgttaaagaatttagcactgaagatgaagccattgaactggccaacgatacacagt 60
Query: 302 atggtttggctggtgctgtaatttctggtgatcgggagcgttgccagaggttatctgagg 361
|||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||
Sbjct: 61 atggtttggctggtgctgtaatttctggtgatcgtgagcgctgccagagattatctgagg 120
Query: 362 agattgacgctggatgcatctgggtaaactgctcgcaaccctgcttctgccaagctccct 421
|||| || |||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 121 agatcgatgctggatgtatctgggtaaactgctcacaaccctgcttctgccaagctccct 180
Query: 422 ggggcgggaacaagcgcagtggatttggacgtgagcttggagaagggggcattgataact 481
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggggtgggaacaagcgcagtggatttggacgtgagcttggagaagggggcattgataact 240
Query: 482 acctgagcgtcaagcaagtcacggagtacatctctgatgagccgtggggatggtaccaat 541
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 241 acctgagcgtcaagcaagtcacggagtacatctctgatgagccgtggggttggtaccaat 300
Query: 542 ccccctccaagctgtaaactggcaa----gacgaaaatttgtctgtttcggtagaataaa 597
||||||||||||||||||| | || ||||||| ||||||||||| |||||||||
Sbjct: 301 ccccctccaagctgtaaacgagaaaatggcacgaaaacttgtctgtttcattagaataaa 360
Query: 598 tatatc-tcgatgctatacagaacgaacccgtgtatca 634
|| ||| | ||||| |||||||||||||||||||||||
Sbjct: 361 taaatcttggatgccatacagaacgaacccgtgtatca 398
>gb|BG558087.1|BG558087 RHIZ2_66_E12.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 542
Score = 563 bits (284), Expect = e-159
Identities = 367/393 (93%), Gaps = 5/393 (1%)
Strand = Plus / Plus
Query: 247 gttaaagaatttagcactgaagatgaagccatcgaacttgccaacgatacacagtatggt 306
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 4 gttaaagaatttagcactgaagatgaagccattgaactggccaacgatacacagtatggt 63
Query: 307 ttggctggtgctgtaatttctggtgatcgggagcgttgccagaggttatctgaggagatt 366
||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct: 64 ttggctggtgctgtaatttctggtgatcgtgagcgctgccagagattatctgaggagatc 123
Query: 367 gacgctggatgcatctgggtaaactgctcgcaaccctgcttctgccaagctccctggggc 426
|| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 124 gatgctggatgtatctgggtaaactgctcacaaccctgcttctgccaagctccctggggt 183
Query: 427 gggaacaagcgcagtggatttggacgtgagcttggagaagggggcattgataactacctg 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 gggaacaagcgcagtggatttggacgtgagcttggagaagggggcattgataactacctg 243
Query: 487 agcgtcaagcaagtcacggagtacatctctgatgagccgtggggatggtaccaatccccc 546
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 244 agcgtcaagcaagtcacggagtacatctctgatgagccgtggggttggtaccaatccccc 303
Query: 547 tccaagctgtaaactggcaa----gacgaaaatttgtctgtttcggtagaataaatatat 602
|||||||||||||| | || ||||||| ||||||||||| ||||||||||| ||
Sbjct: 304 tccaagctgtaaacgagaaaatggcacgaaaacttgtctgtttcattagaataaataaat 363
Query: 603 c-tcgatgctatacagaacgaacccgtgtatca 634
| | ||||| |||||||||||||||||||||||
Sbjct: 364 cttggatgccatacagaacgaacccgtgtatca 396
>gb|BG557719.1|BG557719 EM1_55_H11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 323
Score = 545 bits (275), Expect = e-153
Identities = 311/323 (96%)
Strand = Plus / Plus
Query: 157 aaggggttctttattgaaccaactattattactgatatcaccacatcaatggaaatctgg 216
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaggggttctttattgaaccaacaattattactgatatcaccacatcaatggaaatctgg 60
Query: 217 agggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactgaagatgaagcc 276
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 61 agggaggaagtctttggtccagtcctgtgtgttaaagaatttagcactgaagatgaagcc 120
Query: 277 atcgaacttgccaacgatacacagtatggtttggctggtgctgtaatttctggtgatcgg 336
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attgaactggccaacgatacacagtatggtttggctggtgctgtaatttctggtgatcgt 180
Query: 337 gagcgttgccagaggttatctgaggagattgacgctggatgcatctgggtaaactgctcg 396
||||| |||||||| |||||||||||||| || |||||||| |||||||||||||||||
Sbjct: 181 gagcgctgccagagattatctgaggagatcgatgctggatgtatctgggtaaactgctca 240
Query: 397 caaccctgcttctgccaagctccctggggcgggaacaagcgcagtggatttggacgtgag 456
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 241 caaccctgcttctgccaagctccctggggtgggaacaagcgcagtggatttggacgtgag 300
Query: 457 cttggagaagggggcattgataa 479
|||||||||||||||||||||||
Sbjct: 301 cttggagaagggggcattgataa 323
>gb|BG487960.1|BG487960 RHIZ2_61_D10.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 409
Score = 398 bits (201), Expect = e-109
Identities = 311/346 (89%), Gaps = 5/346 (1%)
Strand = Plus / Plus
Query: 294 tacacagtatggtttggctggtgctgtaatttctggtgatcgggagcgttgccagaggtt 353
|||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||| ||
Sbjct: 1 tacacagtatggtttggctggtgctgtaatttttggtgatcgtgagcgctgccagagatt 60
Query: 354 atctgaggagattgacgctggatgcatctgggtaaactgctcgcaaccctgcttctgcca 413
|| ||||||||| || |||||||| || |||||||||||||| ||||||||||| |||||
Sbjct: 61 atttgaggagatcgatgctggatgtatttgggtaaactgctcacaaccctgcttttgcca 120
Query: 414 agctccctggggcgggaacaagcgcagtggatttggacgtgagcttggagaagggggcat 473
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 121 agctccctggggtgggaacaagcgcagtggatttggacgtgagcttggaaaagggggcat 180
Query: 474 tgataactacctgagcgtcaagcaagtcacggagtacatctctgatgagccgtggggatg 533
||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||| ||
Sbjct: 181 tgataactacctgagggtcaagcaagtcacggagtacatttttgatgagccgtggggttg 240
Query: 534 gtaccaatccccctccaagctgtaaactggcaa----gacgaaaatttgtctgtttcggt 589
||||||||||||||||||||||||||| | || |||||| |||| |||||| |
Sbjct: 241 gtaccaatccccctccaagctgtaaacgagaaaatggcccgaaaacttgtttgtttcatt 300
Query: 590 agaataaatata-tctcgatgctatacagaacgaacccgtgtatca 634
|||||||||| | | | ||||| |||||||||||||||||||||||
Sbjct: 301 agaataaataaattttggatgccatacagaacgaacccgtgtatca 346
>gb|BG559002.1|BG559002 RHIZ2_53_D03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 321
Score = 365 bits (184), Expect = 3e-099
Identities = 270/297 (90%), Gaps = 5/297 (1%)
Strand = Plus / Plus
Query: 343 tgccagaggttatctgaggagattgacgctggatgcatctgggtaaactgctcgcaaccc 402
|||||||| |||| ||||||||| || |||||||| ||||||||||||||||| ||||||
Sbjct: 2 tgccagagattatttgaggagatcgatgctggatgtatctgggtaaactgctcacaaccc 61
Query: 403 tgcttctgccaagctccctggggcgggaacaagcgcagtggatttggacgtgagcttgga 462
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 62 tgcttttgccaagctccctggggtgggaacaagcgcagtggatttggacgtgagcttgga 121
Query: 463 gaagggggcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatgag 522
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 122 aaagggggcattgataactacctgagcgtcaagcaagtcacggagtacatctttgatgag 181
Query: 523 ccgtggggatggtaccaatccccctccaagctgtaaactggcaa----gacgaaaatttg 578
|||||||| ||||||||||||||||||||||||||||| | || |||||| |||
Sbjct: 182 ccgtggggttggtaccaatccccctccaagctgtaaacgagaaaatggcccgaaaacttg 241
Query: 579 tctgtttcggtagaataaatatatc-tcgatgctatacagaacgaacccgtgtatca 634
|||||||| ||||||||||| ||| | ||||| |||||||||||||||||||||||
Sbjct: 242 tctgtttcattagaataaataaatcttggatgccatacagaacgaacccgtgtatca 298
>gb|CF771940.1|CF771940 DSBF1_26_D06.g9_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_26_D06_A010 3', mRNA sequence
Length = 317
Score = 353 bits (178), Expect = 1e-095
Identities = 237/255 (92%), Gaps = 5/255 (1%)
Strand = Plus / Plus
Query: 385 gtaaactgctcgcaaccctgcttctgccaagctccctggggcgggaacaagcgcagtgga 444
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 gtaaactgctcacaaccctgcttctgccaagctccctggggtgggaacaagcgcagtgga 60
Query: 445 tttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagcaagtcacg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagcaagtcacg 120
Query: 505 gagtacatctctgatgagccgtggggatggtaccaatccccctccaagctgtaaactggc 564
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 121 gagtacatctctgatgagccgtggggttggtaccaatccccctccaagctgtaaacgaga 180
Query: 565 aa----gacgaaaatttgtctgtttcggtagaataaatatatc-tcgatgctatacagaa 619
|| ||||||| ||||||||||| ||||||||||| ||| | ||||| ||||||||
Sbjct: 181 aaatggcacgaaaacttgtctgtttcattagaataaataaatcttggatgccatacagaa 240
Query: 620 cgaacccgtgtatca 634
|||||||||||||||
Sbjct: 241 cgaacccgtgtatca 255
>gb|CW377044.1|CW377044 fsbb001f055d03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f055d03, DNA
sequence
Length = 703
Score = 276 bits (139), Expect = 2e-072
Identities = 151/155 (97%)
Strand = Plus / Plus
Query: 147 gcatcttgagaaggggttctttattgaaccaactattattactgatatcaccacatcaat 206
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 95 gcatcttgagaaggggttctttattgaaccaacaattattactgatatcaccacatcaat 154
Query: 207 ggaaatctggagggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactga 266
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 155 ggaaatctggagggaggaagtctttggtccagtcctgtgtgttaaagaatttagcactga 214
Query: 267 agatgaagccatcgaacttgccaacgatacacagt 301
|||||||||||| ||||| ||||||||||||||||
Sbjct: 215 agatgaagccattgaactggccaacgatacacagt 249
Score = 99.6 bits (50), Expect = 3e-019
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 300 gtatggtttggctggtgctgtaatttctggtgatcgggagcgttgccagaggttatctga 359
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct: 352 gtatggtttggctggtgctgtaatttctggtgatcgtgagcgctgccagagattatctga 411
Query: 360 gg 361
||
Sbjct: 412 gg 413
Score = 87.7 bits (44), Expect = 1e-015
Identities = 63/68 (92%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 359 aggagattgacgctggatgcatctgggtaaactgctcgcaaccct-gcttctgccaagct 417
||||||| || |||||||| ||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 625 aggagatcgatgctggatggatctgggtaaactgctcacaaccctggcttctgccaagct 684
Query: 418 ccctgggg 425
||||||||
Sbjct: 685 ccctgggg 692
>gb|CW377043.1|CW377043 fsbb001f055d03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f055d03, DNA
sequence
Length = 698
Score = 204 bits (103), Expect = 8e-051
Identities = 149/159 (93%), Gaps = 4/159 (2%)
Strand = Plus / Minus
Query: 147 gcatcttgagaa-ggggttcttt-attgaaccaacta-ttattactgatatcacc-acat 202
|||||||||||| |||||||||| ||||||||||| | ||||||||||||||||| ||||
Sbjct: 698 gcatcttgagaaaggggttcttttattgaaccaaccaattattactgatatcacccacat 639
Query: 203 caatggaaatctggagggaggaagtctttggtccagtcctgtgcgttaaagaatttagca 262
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 638 caatggaaatctggagggaggaagtctttgtcccagtcctgtgtgttaaagaatttagca 579
Query: 263 ctgaagatgaagccatcgaacttgccaacgatacacagt 301
|||||||||||||||| ||||| ||||||||||||||||
Sbjct: 578 ctgaagatgaagccattgaactggccaacgatacacagt 540
Score = 178 bits (90), Expect = 4e-043
Identities = 105/110 (95%)
Strand = Plus / Minus
Query: 359 aggagattgacgctggatgcatctgggtaaactgctcgcaaccctgcttctgccaagctc 418
||||||| || |||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 164 aggagatcgatgctggatgtatctgggtaaactgctcacaaccctgcttctgccaagctc 105
Query: 419 cctggggcgggaacaagcgcagtggatttggacgtgagcttggagaaggg 468
||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 cctggggtgggaacaagcgcagtggatttggacgtgagcttggagaaggg 55
Score = 99.6 bits (50), Expect = 3e-019
Identities = 59/62 (95%)
Strand = Plus / Minus
Query: 300 gtatggtttggctggtgctgtaatttctggtgatcgggagcgttgccagaggttatctga 359
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct: 437 gtatggtttggctggtgctgtaatttctggtgatcgtgagcgctgccagagattatctga 378
Query: 360 gg 361
||
Sbjct: 377 gg 376
>gb|BG158652.1|BG158652 RHIZ2_43_D02.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 195
Score = 143 bits (72), Expect = 2e-032
Identities = 137/157 (87%), Gaps = 5/157 (3%)
Strand = Plus / Plus
Query: 483 cctgagcgtcaagcaagtcacggagtacatctctgatgagccgtggggatggtaccaatc 542
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 1 cctgagcgtcaagcaagtcaaggagtacatctctgatgagccgtggggttggtaccaatc 60
Query: 543 cccctccaagctgtaaactggcaa----gacgaaaatttgtctgtttcggtagaataaat 598
|||||||||||||||||| | || | ||||| ||||||||||| ||||||||||
Sbjct: 61 cccctccaagctgtaaacgagaaaatggcaagaaaacttgtctgtttcattagaataaat 120
Query: 599 atatc-tcgatgctatacagaacgaacccgtgtatca 634
| ||| | ||||| |||||||| ||||| ||||||||
Sbjct: 121 aaatcttggatgccatacagaaggaaccggtgtatca 157
>gb|CD222832.1|CD222832 CCC1_24_A06.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_24_A06_A007 3', mRNA sequence
Length = 607
Score = 125 bits (63), Expect = 6e-027
Identities = 144/171 (84%)
Strand = Plus / Plus
Query: 386 taaactgctcgcaaccctgcttctgccaagctccctggggcgggaacaagcgcagtggat 445
|||||||||||||||| |||||| ||||||||| ||||| ||||||||||| || || |
Sbjct: 199 taaactgctcgcaaccgtgcttcgtccaagctccatggggagggaacaagcggagcggtt 258
Query: 446 ttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagcaagtcacgg 505
|||| || ||||| |||||| ||||| ||||||||||| ||| ||| |||||||||||
Sbjct: 259 ttggtcgggagctcggagaatggggccttgataactacatgaccgtgaagcaagtcacca 318
Query: 506 agtacatctctgatgagccgtggggatggtaccaatccccctccaagctgt 556
|||| ||| ||||| ||||||||||||||||| | || ||||||||||
Sbjct: 319 agtattgctcggatgaaccgtggggatggtaccagcctccatccaagctgt 369
Score = 56.0 bits (28), Expect = 4e-006
Identities = 94/116 (81%)
Strand = Plus / Plus
Query: 202 tcaatggaaatctggagggaggaagtctttggtccagtcctgtgcgttaaagaatttagc 261
|||||| |||| ||| | |||||||||||||| || ||| | |||||||||||||| ||
Sbjct: 15 tcaatgcaaatttggcgagaggaagtctttggacctgtcatctgcgttaaagaattcagg 74
Query: 262 actgaagatgaagccatcgaacttgccaacgatacacagtatggtttggctggtgc 317
| || |||||| | |||||||| || ||||| ||||||||||| ||||||||
Sbjct: 75 agagagagtgaagctgtggaacttgcaaatgatactcagtatggtttagctggtgc 130
>gb|BG464774.1|BG464774 EM1_34_A03.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 326
Score = 119 bits (60), Expect = 3e-025
Identities = 143/171 (83%)
Strand = Plus / Plus
Query: 386 taaactgctcgcaaccctgcttctgccaagctccctggggcgggaacaagcgcagtggat 445
|||||||||||||||| |||||| ||||||||| ||||| ||||||||||| || || |
Sbjct: 80 taaactgctcgcaaccatgcttcgtccaagctccatggggagggaacaagcggagcggtt 139
Query: 446 ttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagcaagtcacgg 505
|||| || ||||| |||||| ||||| ||||||||||| ||| ||| |||||||||||
Sbjct: 140 ttggtcgggagctcggagaatggggccttgataactacatgaccgtgaagcaagtcacca 199
Query: 506 agtacatctctgatgagccgtggggatggtaccaatccccctccaagctgt 556
|||| ||| ||||| ||||||||| ||||||| | || ||||||||||
Sbjct: 200 agtattgctcggatgaaccgtgggganggtaccagcctccatccaagctgt 250
>gb|U12196.1|SBU12196 Sorghum bicolor clone BADH15 betaine aldehyde dehydrogenase mRNA,
complete cds
Length = 1799
Score = 99.6 bits (50), Expect = 3e-019
Identities = 141/169 (83%), Gaps = 3/169 (1%)
Strand = Plus / Plus
Query: 388 aactgctcgcaaccctgcttctgccaagctccctggggcgggaacaagcgcagtggattt 447
|||||||||||||| |||||| ||||||||| ||||| ||||||||||| | || |||
Sbjct: 1408 aactgctcgcaaccatgcttcgtccaagctccatggggagggaacaagcgga-tg--ttt 1464
Query: 448 ggacgtgagcttggagaagggggcattgataactacctgagcgtcaagcaagtcacggag 507
|| || ||||| |||||| ||||| ||||||||||| ||| ||| ||||||||||| ||
Sbjct: 1465 ggtcgggagctcggagaatggggccttgataactacatgaccgtgaagcaagtcaccaag 1524
Query: 508 tacatctctgatgagccgtggggatggtaccaatccccctccaagctgt 556
|| ||| ||||| ||||||||||||||||| | || ||||||||||
Sbjct: 1525 tattgctcggatgaaccgtggggatggtaccagcctccatccaagctgt 1573
Score = 63.9 bits (32), Expect = 2e-008
Identities = 209/268 (77%)
Strand = Plus / Plus
Query: 50 cagttgttagtgaaggacagtatgagaagattaaaaagttcatatcgaatgccaaaagcc 109
||||||| |||||||||||||| || ||||| || |||||||| || | ||| | |||
Sbjct: 1076 cagttgtcagtgaaggacagtacgaaaagataaagaagttcatctcaactgcaagaagtg 1135
Query: 110 aaggtgctactattctgactggaggtgttagacctgcgcatcttgagaaggggttcttta 169
||||||| || |||||| |||||||| |||| |||||| | | |||||||||
Sbjct: 1136 aaggtgccacaattctgtatggaggtgcccgaccacagcatctcaaaagagggttctttc 1195
Query: 170 ttgaaccaactattattactgatatcaccacatcaatggaaatctggagggaggaagtct 229
||||||| || ||||| || ||| | | || |||||| |||| ||| | ||||||||||
Sbjct: 1196 ttgaacctacaattataacagatgttagtacgtcaatgcaaatttggcgagaggaagtct 1255
Query: 230 ttggtccagtcctgtgcgttaaagaatttagcactgaagatgaagccatcgaacttgcca 289
|||| || ||| | |||||||||||||| || | || |||||| | |||||||| |
Sbjct: 1256 ttggacctgtcatctgcgttaaagaattcaggagagagagtgaagctgtggaacttgcaa 1315
Query: 290 acgatacacagtatggtttggctggtgc 317
| ||||| ||||||||||| ||||||||
Sbjct: 1316 atgatactcagtatggtttagctggtgc 1343
>gb|CW294731.1|CW294731 104_775_11415340_116_36233_004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11415340, DNA
sequence
Length = 700
Score = 60.0 bits (30), Expect = 3e-007
Identities = 75/90 (83%)
Strand = Plus / Plus
Query: 467 ggggcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatgagccgt 526
||||| ||||||||||| ||| ||| ||||||||||| |||| ||| ||||| ||||
Sbjct: 23 ggggccttgataactacatgaccgtgaagcaagtcaccaagtattgctcggatgaaccgt 82
Query: 527 ggggatggtaccaatccccctccaagctgt 556
||||||||||||| | || ||||||||||
Sbjct: 83 ggggatggtaccagcctccatccaagctgt 112
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 148,709
Number of Sequences: 832831
Number of extensions: 148709
Number of successful extensions: 37545
Number of sequences better than 0.5: 34
Number of HSP's better than 0.5 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37429
Number of HSP's gapped (non-prelim): 83
length of query: 672
length of database: 491,359,669
effective HSP length: 19
effective length of query: 653
effective length of database: 475,535,880
effective search space: 310524929640
effective search space used: 310524929640
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)