BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3204486.2.1
(607 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG463830.1|BG463830 EM1_51_D11.g1_A002 Embryo 1 (EM1) So... 678 0.0
gb|CD425713.1|CD425713 SA1_14_G10.b1_A002 Salicylic acid-tr... 662 0.0
gb|BE598075.1|BE598075 PI1_65_D11.b1_A002 Pathogen induced ... 609 e-172
gb|BE597792.1|BE597792 PI1_65_D11.g1_A002 Pathogen induced ... 607 e-172
gb|CD222469.1|CD222469 CCC1_22_D09.b1_A007 Callus culture/c... 607 e-172
gb|BM318320.1|BM318320 PI1_77_C01.g9_A002 Pathogen induced ... 492 e-137
gb|BG049572.1|BG049572 EM1_6_A04.g1_A002 Embryo 1 (EM1) Sor... 280 1e-073
gb|CW375588.1|CW375588 fsbb001f053a12f0 Sorghum methylation... 268 5e-070
gb|BE364705.2|BE364705 PI1_14_A03.g1_A002 Pathogen induced ... 258 5e-067
gb|CW214664.1|CW214664 104_646_11194133_148_37052_019 Sorgh... 186 2e-045
gb|CW270173.1|CW270173 104_741_11402265_148_35326_035 Sorgh... 88 1e-015
gb|CW443161.1|CW443161 fsbb001f163c01f0 Sorghum methylation... 88 1e-015
gb|BE597944.1|BE597944 PI1_67_D07.g1_A002 Pathogen induced ... 88 1e-015
gb|BG605769.1|BG605769 RHIZ2_81_C06.g1_A003 Rhizome2 (RHIZ2... 88 1e-015
gb|BM323395.1|BM323395 PIC1_18_G08.b1_A002 Pathogen-infecte... 88 1e-015
gb|CX621607.1|CX621607 GABR1_59_C10.b1_A002 GA- or brassino... 88 1e-015
gb|CX622799.1|CX622799 GABR1_66_B12.b1_A002 GA- or brassino... 80 3e-013
gb|BE600431.1|BE600431 PI1_96_B11.g1_A002 Pathogen induced ... 74 2e-011
gb|BG356829.1|BG356829 OV2_10_E05.g1_A002 Ovary 2 (OV2) Sor... 74 2e-011
gb|CW210137.1|CW210137 104_640_11189633_116_37430_071 Sorgh... 72 7e-011
gb|CW428110.1|CW428110 fsbb001f140h15f0 Sorghum methylation... 72 7e-011
gb|CW440071.1|CW440071 fsbb001f158i14k0 Sorghum methylation... 72 7e-011
gb|CW037029.1|CW037029 104_268_10504101_115_30382 Sorghum m... 70 3e-010
gb|CL196237.1|CL196237 104_422_10942921_114_32318_011 Sorgh... 68 1e-009
gb|CW036704.1|CW036704 104_268_10503921_115_30382 Sorghum m... 68 1e-009
gb|CW081885.1|CW081885 104_422_10942921_114_32347_011 Sorgh... 68 1e-009
gb|CW328745.1|CW328745 104_825_11479474_116_36002_047 Sorgh... 68 1e-009
gb|BE599254.1|BE599254 PI1_87_C07.g1_A002 Pathogen induced ... 68 1e-009
gb|BG464873.1|BG464873 EM1_35_E05.g1_A002 Embryo 1 (EM1) So... 68 1e-009
gb|CD207800.1|CD207800 HS1_35_F04.b1_A012 Heat-shocked seed... 68 1e-009
gb|CD221689.1|CD221689 CCC1_70_G07.b1_A007 Callus culture/c... 68 1e-009
gb|CD224425.1|CD224425 CCC1_34_B10.b1_A007 Callus culture/c... 68 1e-009
gb|CD224596.1|CD224596 CCC1_35_A08.b1_A007 Callus culture/c... 68 1e-009
gb|CD231398.1|CD231398 SS1_16_F09.b1_A012 Salt-stressed see... 68 1e-009
gb|CD235665.1|CD235665 SS1_37_D01.b1_A012 Salt-stressed see... 68 1e-009
gb|CD429079.1|CD429079 ETH1_2_F04.b1_A002 Ethylene-treated ... 68 1e-009
gb|CD430019.1|CD430019 ETH1_13_D07.b1_A002 Ethylene-treated... 68 1e-009
gb|CD430646.1|CD430646 ETH1_20_H12.b1_A002 Ethylene-treated... 68 1e-009
gb|CD462252.1|CD462252 SA1_40_D04.b1_A002 Salicylic acid-tr... 68 1e-009
gb|CF072211.1|CF072211 FE1_6_A03.b1_A002 Iron-deficient see... 68 1e-009
gb|CF433270.1|CF433270 NIT1_26_B07.b1_A002 Nitrogen-deficie... 68 1e-009
gb|CF757575.1|CF757575 DSAF1_19_F07.g1_A011 Drought-stresse... 68 1e-009
gb|CF758259.1|CF758259 DSAF1_29_E05.g1_A011 Drought-stresse... 68 1e-009
gb|CF758895.1|CF758895 DSAF1_37_H02.g1_A011 Drought-stresse... 68 1e-009
gb|CN126061.1|CN126061 RHOH1_15_A03.b1_A002 Acid- and alkal... 68 1e-009
gb|CX608378.1|CX608378 ANR1_38_F10.b1_A002 Anaerobic roots ... 68 1e-009
gb|CX609358.1|CX609358 ANR1_12_E10.b1_A002 Anaerobic roots ... 68 1e-009
gb|CX609862.1|CX609862 ANR1_15_E05.b1_A002 Anaerobic roots ... 68 1e-009
gb|CX611676.1|CX611676 ANR1_26_C02.b1_A002 Anaerobic roots ... 68 1e-009
gb|CW292535.1|CW292535 104_772_11414140_116_35580_006 Sorgh... 66 4e-009
gb|CW292536.1|CW292536 104_772_11414140_148_35584_006 Sorgh... 66 4e-009
gb|CW043074.1|CW043074 104_277_10507583_114_30250 Sorghum m... 64 2e-008
gb|CW249079.1|CW249079 104_710_11222649_148_35033_035 Sorgh... 64 2e-008
gb|BM328823.1|BM328823 PIC1_27_A08.g1_A002 Pathogen-infecte... 64 2e-008
gb|CW194610.1|CW194610 104_617_11180189_148_36791_017 Sorgh... 60 2e-007
gb|CW201939.1|CW201939 104_628_11184832_116_37087_064 Sorgh... 60 2e-007
gb|CW333238.1|CW333238 104_831_11481834_116_36045_077 Sorgh... 60 2e-007
gb|CW333239.1|CW333239 104_831_11481834_148_36046_077 Sorgh... 60 2e-007
gb|CD428767.1|CD428767 ETH1_36_C04.b1_A002 Ethylene-treated... 60 2e-007
gb|CD432118.1|CD432118 ETH1_26_C05.b1_A002 Ethylene-treated... 60 2e-007
gb|CD432288.1|CD432288 ETH1_29_F09.b1_A002 Ethylene-treated... 60 2e-007
gb|CD462513.1|CD462513 ETH1_38_F12.b1_A002 Ethylene-treated... 60 2e-007
gb|CN128226.1|CN128226 RHOH1_28_A07.b1_A002 Acid- and alkal... 60 2e-007
gb|CL195297.1|CL195297 104_420_10942269_116_32306_087 Sorgh... 58 1e-006
gb|CW273063.1|CW273063 104_745_11403700_148_35359_008 Sorgh... 58 1e-006
gb|CW273064.1|CW273064 104_745_11403700_148_35717_008 Sorgh... 58 1e-006
gb|CD204167.1|CD204167 HS1_4_B08.b1_A012 Heat-shocked seedl... 58 1e-006
gb|CD204776.1|CD204776 HS1_10_E12.b1_A012 Heat-shocked seed... 58 1e-006
gb|CD235503.1|CD235503 SS1_36_H02.b1_A012 Salt-stressed see... 58 1e-006
gb|CD423835.1|CD423835 SA1_2_C11.b1_A002 Salicylic acid-tre... 58 1e-006
gb|CN140922.1|CN140922 OX1_48_C08.b1_A002 Oxidatively-stres... 58 1e-006
gb|CL195890.1|CL195890 104_421_10942690_114_32311_037 Sorgh... 56 4e-006
gb|CW167636.1|CW167636 104_576_11153708_116_36487_066 Sorgh... 56 4e-006
gb|CW210138.1|CW210138 104_640_11189633_148_37429_071 Sorgh... 56 4e-006
gb|CW374098.1|CW374098 fsbb001f050m15f0 Sorghum methylation... 56 4e-006
gb|CW452612.1|CW452612 fsbb001f193e01k0 Sorghum methylation... 56 4e-006
gb|BE362885.2|BE362885 DG1_90_A11.g1_A002 Dark Grown 1 (DG1... 56 4e-006
gb|CN130555.1|CN130555 RHOH1_42_F10.b1_A002 Acid- and alkal... 56 4e-006
gb|CX609195.1|CX609195 ANR1_11_F01.b1_A002 Anaerobic roots ... 56 4e-006
gb|CX612014.1|CX612014 ANR1_28_B09.b1_A002 Anaerobic roots ... 56 4e-006
gb|CX617888.1|CX617888 GABR1_36_H11.b1_A002 GA- or brassino... 56 4e-006
gb|CX618530.1|CX618530 GABR1_40_E01.b1_A002 GA- or brassino... 56 4e-006
gb|CL156409.1|CL156409 104_343_10782844_114_31475_172 Sorgh... 54 2e-005
gb|CL178485.1|CL178485 104_386_10894621_148_31911_301 Sorgh... 54 2e-005
gb|CW022054.1|CW022054 104_161_10431616_1_30006 Sorghum met... 54 2e-005
gb|CW156291.1|CW156291 104_559_11146606_116_36378_093 Sorgh... 54 2e-005
gb|CW156292.1|CW156292 104_559_11146606_148_36377_093 Sorgh... 54 2e-005
gb|CW302592.1|CW302592 104_786_11464799_148_35668_084 Sorgh... 54 2e-005
gb|CW390862.1|CW390862 fsbb001f076l07f0 Sorghum methylation... 54 2e-005
gb|CW390863.1|CW390863 fsbb001f076l07k0 Sorghum methylation... 54 2e-005
gb|CW432798.1|CW432798 fsbb001f147l07f0 Sorghum methylation... 54 2e-005
gb|BE600466.1|BE600466 PI1_96_D11.g1_A002 Pathogen induced ... 54 2e-005
gb|BF177048.1|BF177048 EM1_2_H12.g1_A002 Embryo 1 (EM1) Sor... 54 2e-005
gb|BG356762.1|BG356762 OV2_9_F07.g1_A002 Ovary 2 (OV2) Sorg... 54 2e-005
gb|CD425729.1|CD425729 SA1_14_C07.b1_A002 Salicylic acid-tr... 54 2e-005
gb|CD463270.1|CD463270 ETH1_43_C05.b1_A002 Ethylene-treated... 54 2e-005
gb|CX622111.1|CX622111 GABR1_62_C11.b2_A002 GA- or brassino... 54 2e-005
gb|CL171464.1|CL171464 104_373_10889443_116_31777_115 Sorgh... 52 6e-005
gb|CW038417.1|CW038417 104_270_10504914_114_30385 Sorghum m... 52 6e-005
gb|CW243563.1|CW243563 104_704_11220116_148_37579_078 Sorgh... 52 6e-005
gb|CW454935.1|CW454935 fsbb001f199j19f0 Sorghum methylation... 52 6e-005
gb|CX608824.1|CX608824 ANR1_9_A08.b1_A002 Anaerobic roots S... 52 6e-005
gb|CW029604.1|CW029604 104_257_10499768_116_30402 Sorghum m... 50 2e-004
gb|CW104367.1|CW104367 104_473_11012394_116_34445_073 Sorgh... 50 2e-004
gb|CW240667.1|CW240667 104_699_11218338_148_37537_071 Sorgh... 50 2e-004
gb|CW314006.1|CW314006 104_804_11471593_116_35794_007 Sorgh... 50 2e-004
gb|CW314007.1|CW314007 104_804_11471593_148_35798_007 Sorgh... 50 2e-004
gb|CW479020.1|CW479020 fsbb001f237d14f0 Sorghum methylation... 50 2e-004
gb|CW480818.1|CW480818 fsbb001f240b10f0 Sorghum methylation... 50 2e-004
gb|BG102011.1|BG102011 RHIZ2_23_G07.g1_A003 Rhizome2 (RHIZ2... 50 2e-004
gb|CD206042.1|CD206042 HS1_20_B07.b1_A012 Heat-shocked seed... 50 2e-004
gb|CF071192.1|CF071192 FE1_16_E09.b1_A002 Iron-deficient se... 50 2e-004
gb|CF071206.1|CF071206 FE1_16_B06.b1_A002 Iron-deficient se... 50 2e-004
gb|CF074378.1|CF074378 FE1_24_C03.b1_A002 Iron-deficient se... 50 2e-004
gb|CF426882.1|CF426882 PH1_2_E02.b1_A002 Phosphorous-defici... 50 2e-004
gb|CF433906.1|CF433906 NIT1_31_G05.b1_A002 Nitrogen-deficie... 50 2e-004
gb|CN129932.1|CN129932 RHOH1_38_F12.b1_A002 Acid- and alkal... 50 2e-004
gb|CX606426.1|CX606426 ANR1_3_A07.b1_A002 Anaerobic roots S... 50 2e-004
gb|CX607983.1|CX607983 ANR1_32_A02.b1_A002 Anaerobic roots ... 50 2e-004
gb|CX608563.1|CX608563 ANR1_39_G11.b1_A002 Anaerobic roots ... 50 2e-004
gb|CX608856.1|CX608856 ANR1_9_E03.b1_A002 Anaerobic roots S... 50 2e-004
gb|CX610654.1|CX610654 ANR1_20_B11.b1_A002 Anaerobic roots ... 50 2e-004
gb|CX611371.1|CX611371 ANR1_24_F11.b1_A002 Anaerobic roots ... 50 2e-004
gb|CX611514.1|CX611514 ANR1_25_C12.b1_A002 Anaerobic roots ... 50 2e-004
gb|CX621243.1|CX621243 GABR1_57_A03.b1_A002 GA- or brassino... 50 2e-004
gb|CX622673.1|CX622673 GABR1_65_G10.b1_A002 GA- or brassino... 50 2e-004
gb|CL173569.1|CL173569 104_377_10890964_148_31792_100 Sorgh... 48 0.001
gb|CL195066.1|CL195066 104_420_10942101_114_32300_093 Sorgh... 48 0.001
gb|CL195067.1|CL195067 104_420_10942101_116_32304_093 Sorgh... 48 0.001
gb|CW316812.1|CW316812 104_808_11473089_148_35857_041 Sorgh... 48 0.001
gb|CW330311.1|CW330311 104_827_11480308_116_36014_012 Sorgh... 48 0.001
gb|CW330312.1|CW330312 104_827_11480308_148_36013_012 Sorgh... 48 0.001
gb|CW464046.1|CW464046 fsbb001f213b06k0 Sorghum methylation... 48 0.001
gb|CW469442.1|CW469442 fsbb001f222c17k0 Sorghum methylation... 48 0.001
gb|BE600284.1|BE600284 PI1_94_E09.g1_A002 Pathogen induced ... 48 0.001
gb|BG048181.1|BG048181 OV1_28_F09.g1_A002 Ovary 1 (OV1) Sor... 48 0.001
gb|CD212445.1|CD212445 HS1_5_G10.b1_A012 Heat-shocked seedl... 48 0.001
gb|CX606105.1|CX606105 ANR1_1_E02.b1_A002 Anaerobic roots S... 48 0.001
gb|CX607494.1|CX607494 ANR1_29_B12.b1_A002 Anaerobic roots ... 48 0.001
gb|CX608818.1|CX608818 ANR1_9_A01.b1_A002 Anaerobic roots S... 48 0.001
gb|CX612908.1|CX612908 GABR1_5_D10.b1_A002 GA- or brassinol... 48 0.001
gb|CX622295.1|CX622295 GABR1_63_C12.b2_A002 GA- or brassino... 48 0.001
gb|CX622633.1|CX622633 GABR1_65_C09.b1_A002 GA- or brassino... 48 0.001
gb|CL161346.1|CL161346 104_352_10805655_116_31827_327 Sorgh... 46 0.004
gb|CW398195.1|CW398195 fsbb001f087i12k0 Sorghum methylation... 46 0.004
gb|AW677463.1|AW677463 DG1_7_H11.g1_A002 Dark Grown 1 (DG1)... 46 0.004
gb|BG947618.1|BG947618 IP1_6_H07.g1_A002 Immature pannicle ... 46 0.004
gb|BI076399.1|BI076399 IP1_26_H07.g1_A002 Immature pannicle... 46 0.004
gb|CB926011.1|CB926011 ABA1_31_B06.b1_A012 Abscisic acid-tr... 46 0.004
gb|CX612595.1|CX612595 GABR1_3_G10.b1_A002 GA- or brassinol... 46 0.004
gb|CX623176.1|CX623176 GABR1_68_D11.b1_A002 GA- or brassino... 46 0.004
gb|DN552421.1|DN552421 pSHR-L_C08_C042 pSHR Sorghum halepen... 46 0.004
gb|CL167649.1|CL167649 104_364_10810226_114_31802_290 Sorgh... 44 0.015
gb|CW022864.1|CW022864 104_162_10432100_5_30000 Sorghum met... 44 0.015
gb|CW083657.1|CW083657 104_426_10945303_116_32438_032 Sorgh... 44 0.015
gb|CW151339.1|CW151339 104_552_11143883_116_36315_046 Sorgh... 44 0.015
gb|CW151340.1|CW151340 104_552_11143883_148_36316_046 Sorgh... 44 0.015
gb|CW155360.1|CW155360 104_557_11146098_116_36358_065 Sorgh... 44 0.015
gb|CW155361.1|CW155361 104_557_11146098_148_36357_065 Sorgh... 44 0.015
gb|CW198384.1|CW198384 104_623_11182946_116_36843_013 Sorgh... 44 0.015
gb|CW243011.1|CW243011 104_702_11219652_148_37565_034 Sorgh... 44 0.015
gb|CW256907.1|CW256907 104_722_11227054_116_35153_093 Sorgh... 44 0.015
gb|CW300038.1|CW300038 104_783_11463435_148_36250_012 Sorgh... 44 0.015
gb|CW304337.1|CW304337 104_789_11465731_116_35701_076 Sorgh... 44 0.015
gb|CW378016.1|CW378016 fsbb001f056j13f0 Sorghum methylation... 44 0.015
gb|CW382284.1|CW382284 fsbb001f064c03f0 Sorghum methylation... 44 0.015
gb|CW403387.1|CW403387 fsbb001f095b10k0 Sorghum methylation... 44 0.015
gb|CB926920.1|CB926920 ABA1_11_B03.b1_A012 Abscisic acid-tr... 44 0.015
gb|CD235500.1|CD235500 SS1_36_A08.b1_A012 Salt-stressed see... 44 0.015
gb|CN144277.1|CN144277 WOUND1_21_E10.b1_A002 Wounded leaves... 44 0.015
gb|BG052435.1|BG052435 RHIZ2_13_H03.g1_A003 Rhizome2 (RHIZ2... 42 0.058
gb|BG052497.1|BG052497 RHIZ2_13_H03.b1_A003 Rhizome2 (RHIZ2... 42 0.058
gb|CD425781.1|CD425781 SA1_14_C07.g1_A002 Salicylic acid-tr... 42 0.058
gb|CW172719.1|CW172719 104_584_11156440_148_36547_064 Sorgh... 40 0.23
gb|CW172759.1|CW172759 104_584_11156463_148_36542_062 Sorgh... 40 0.23
gb|CW195852.1|CW195852 104_619_11180855_116_36805_086 Sorgh... 40 0.23
gb|CW227162.1|CW227162 104_665_11205267_148_37224_008 Sorgh... 40 0.23
gb|CW230928.1|CW230928 104_680_11210856_148_37338_096 Sorgh... 40 0.23
gb|CW240666.1|CW240666 104_699_11218338_116_37550_071 Sorgh... 40 0.23
gb|CW262805.1|CW262805 104_730_11230283_148_35219_038 Sorgh... 40 0.23
gb|CW301973.1|CW301973 104_786_11464479_148_35666_064 Sorgh... 40 0.23
gb|CW302324.1|CW302324 104_786_11464660_148_35667_008 Sorgh... 40 0.23
gb|CW303395.1|CW303395 104_787_11465216_116_35677_018 Sorgh... 40 0.23
gb|CW470450.1|CW470450 fsbb001f223k11k0 Sorghum methylation... 40 0.23
gb|BE358162.1|BE358162 DG1_24_D01.g1_A002 Dark Grown 1 (DG1... 40 0.23
gb|BE363125.1|BE363125 DG1_9_B11.g1_A002 Dark Grown 1 (DG1)... 40 0.23
gb|BE917852.1|BE917852 OV1_7_H08.g1_A002 Ovary 1 (OV1) Sorg... 40 0.23
gb|BE917936.1|BE917936 OV1_7_H08.b1_A002 Ovary 1 (OV1) Sorg... 40 0.23
gb|BF318053.1|BF318053 OV1_11_D07.b1_A002 Ovary 1 (OV1) Sor... 40 0.23
gb|BG052895.1|BG052895 RHIZ2_15_E12.g1_A003 Rhizome2 (RHIZ2... 40 0.23
gb|BG053626.1|BG053626 RHIZ2_11_G05.g1_A003 Rhizome2 (RHIZ2... 40 0.23
gb|BG054104.1|BG054104 OV2_3_E10.g1_A002 Ovary 2 (OV2) Sorg... 40 0.23
gb|BG240657.1|BG240657 OV1_32_F05.b1_A002 Ovary 1 (OV1) Sor... 40 0.23
gb|BG605746.1|BG605746 RHIZ2_81_A05.g1_A003 Rhizome2 (RHIZ2... 40 0.23
gb|BG933625.1|BG933625 OV1_32_F05.g1_A002 Ovary 1 (OV1) Sor... 40 0.23
gb|BM326793.1|BM326793 PIC1_2_H03.g1_A002 Pathogen-infected... 40 0.23
gb|CD232417.1|CD232417 SS1_45_F06.b1_A012 Salt-stressed see... 40 0.23
gb|CD233799.1|CD233799 SS1_4_D03.b1_A012 Salt-stressed seed... 40 0.23
gb|CF072665.1|CF072665 FE1_25_H06.b1_A002 Iron-deficient se... 40 0.23
gb|CF073446.1|CF073446 FE1_10_C04.b1_A002 Iron-deficient se... 40 0.23
gb|CX606296.1|CX606296 ANR1_2_F03.b1_A002 Anaerobic roots S... 40 0.23
gb|CX616152.1|CX616152 GABR1_26_E04.b1_A002 GA- or brassino... 40 0.23
>gb|BG463830.1|BG463830 EM1_51_D11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 698
Score = 678 bits (342), Expect = 0.0
Identities = 396/414 (95%)
Strand = Plus / Plus
Query: 12 gcgcggcacggcctgtacggcgaggacgacatcgtgcccatctccatctgctggcagata 71
||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||
Sbjct: 43 gcgcggcacggcctgtacggcaaggacgaccacgtgcccatctccatcttctggcagata 102
Query: 72 ccgcagtacttcatcatcgggtgcgcggaggtgttcaccttcgtggggcagctggagttc 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 ccgcagtacttcatcatcgggtgcgcggaggtgttcaccttcgtggggcagctggagttc 162
Query: 132 ttctacgaccaggcgcccgacgccatgaggagcatgtgctccgcgctgtcgctcaccacc 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 ttctacgaccaggcgcccgacgccatgaggagcatgtgctccgcgctgtcgctcaccacc 222
Query: 192 gtcgcgctcggcaactacctcagcacggtcctggtgaccatcgtcacccacatcaccacc 251
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 223 gtcgcgctcggcaactacctcagcacggtgctggtgaccatcgtcacgcacatcaccacc 282
Query: 252 aggcacggccgcatcgggtggatcccggagaacctcaaccgcggccacctcgactacttc 311
||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 283 aggaacggcaacatcgggtggatcccggagaacctcaaccggggccacctcgactacttc 342
Query: 312 ttctggctgctcgccgtgctcagccttctcaacttccttgcctacctcgtcatcgccagc 371
|||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||| |
Sbjct: 343 ttctggctgctcgccgtgctcagcctcctcaacttcctcgtctacctcgtcatcgccacc 402
Query: 372 tggtacaagtacaagaagacggccgatgattaccctggcgccaaaggggagcac 425
|||||||||||||||||||||||||||||| ||| | ||||||||||||||||
Sbjct: 403 tggtacaagtacaagaagacggccgatgatatcccggacgccaaaggggagcac 456
>gb|CD425713.1|CD425713 SA1_14_G10.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_14_G10_A002 3', mRNA sequence
Length = 666
Score = 662 bits (334), Expect = 0.0
Identities = 394/414 (95%)
Strand = Plus / Plus
Query: 12 gcgcggcacggcctgtacggcgaggacgacatcgtgcccatctccatctgctggcagata 71
||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||
Sbjct: 11 gcgcggcacggcctgtacggcaaggacgaccacgtgcccatctccatcttctggcagata 70
Query: 72 ccgcagtacttcatcatcgggtgcgcggaggtgttcaccttcgtggggcagctggagttc 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 ccgcagtacttcatcatcgggtgcgcggaggtgttcaccttcgtggggcagctggagttc 130
Query: 132 ttctacgaccaggcgcccgacgccatgaggagcatgtgctccgcgctgtcgctcaccacc 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ttctacgaccaggcgcccgacgccatgaggagcatgtgctccgcgctgtcgctcaccacc 190
Query: 192 gtcgcgctcggcaactacctcagcacggtcctggtgaccatcgtcacccacatcaccacc 251
||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||
Sbjct: 191 gtcgcgctcggcaactacctcagcacggtgccggtgaccatcgtcacgcacatcaccacc 250
Query: 252 aggcacggccgcatcgggtggatcccggagaacctcaaccgcggccacctcgactacttc 311
||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 251 aggaacggcaacatcgggtggatcccggagaacctcaaccggggccacctcgactacttc 310
Query: 312 ttctggctgctcgccgtgctcagccttctcaacttccttgcctacctcgtcatcgccagc 371
||||||||||||||||||| |||||| ||||||||||| | ||||||||||||||||| |
Sbjct: 311 ttctggctgctcgccgtgcccagcctcctcaacttcctcgtctacctcgtcatcgccacc 370
Query: 372 tggtacaagtacaagaagacggccgatgattaccctggcgccaaaggggagcac 425
|||||||||||||||||||||||||||||| ||| | ||||||||||||||||
Sbjct: 371 tggtacaagtacaagaagacggccgatgatatcccggacgccaaaggggagcac 424
>gb|BE598075.1|BE598075 PI1_65_D11.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 542
Score = 609 bits (307), Expect = e-172
Identities = 349/363 (96%)
Strand = Plus / Plus
Query: 12 gcgcggcacggcctgtacggcgaggacgacatcgtgcccatctccatctgctggcagata 71
||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||
Sbjct: 180 gcgcggcacggcctgtacggcaaggacgaccacgtgcccatctccatcttctggcagata 239
Query: 72 ccgcagtacttcatcatcgggtgcgcggaggtgttcaccttcgtggggcagctggagttc 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ccgcagtacttcatcatcgggtgcgcggaggtgttcaccttcgtggggcagctggagttc 299
Query: 132 ttctacgaccaggcgcccgacgccatgaggagcatgtgctccgcgctgtcgctcaccacc 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ttctacgaccaggcgcccgacgccatgaggagcatgtgctccgcgctgtcgctcaccacc 359
Query: 192 gtcgcgctcggcaactacctcagcacggtcctggtgaccatcgtcacccacatcaccacc 251
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 360 gtcgcgctcggcaactacctcagcacggtgctggtgaccatcgtcacgcacatcaccacc 419
Query: 252 aggcacggccgcatcgggtggatcccggagaacctcaaccgcggccacctcgactacttc 311
||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 420 aggaacggcaacatcgggtggatcccggagaacctcaaccggggccacctcgactacttc 479
Query: 312 ttctggctgctcgccgtgctcagccttctcaacttccttgcctacctcgtcatcgccagc 371
|||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||| |
Sbjct: 480 ttctggctgctcgccgtgctcagcctcctcaacttcctcgtctacctcgtcatcgccacc 539
Query: 372 tgg 374
|||
Sbjct: 540 tgg 542
>gb|BE597792.1|BE597792 PI1_65_D11.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 414
Score = 607 bits (306), Expect = e-172
Identities = 348/362 (96%)
Strand = Plus / Plus
Query: 64 ggcagataccgcagtacttcatcatcgggtgcgcggaggtgttcaccttcgtggggcagc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggcagataccgcagtacttcatcatcgggtgcgcggaggtgttcaccttcgtggggcagc 60
Query: 124 tggagttcttctacgaccaggcgcccgacgccatgaggagcatgtgctccgcgctgtcgc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tggagttcttctacgaccaggcgcccgacgccatgaggagcatgtgctccgcgctgtcgc 120
Query: 184 tcaccaccgtcgcgctcggcaactacctcagcacggtcctggtgaccatcgtcacccaca 243
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 121 tcaccaccgtcgcgctcggcaactacctcagcacggtgctggtgaccatcgtcacgcaca 180
Query: 244 tcaccaccaggcacggccgcatcgggtggatcccggagaacctcaaccgcggccacctcg 303
||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 181 tcaccaccaggaacggcaacatcgggtggatcccggagaacctcaaccggggccacctcg 240
Query: 304 actacttcttctggctgctcgccgtgctcagccttctcaacttccttgcctacctcgtca 363
|||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||
Sbjct: 241 actacttcttctggctgctcgccgtgctcagcctcctcaacttcctcgtctacctcgtca 300
Query: 364 tcgccagctggtacaagtacaagaagacggccgatgattaccctggcgccaaaggggagc 423
|||||| ||||||||||||||||||||||||||||||| ||| | ||||||||||||||
Sbjct: 301 tcgccacctggtacaagtacaagaagacggccgatgatatcccggacgccaaaggggagc 360
Query: 424 ac 425
||
Sbjct: 361 ac 362
>gb|CD222469.1|CD222469 CCC1_22_D09.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_22_D09_A007 3', mRNA sequence
Length = 598
Score = 607 bits (306), Expect = e-172
Identities = 348/362 (96%)
Strand = Plus / Plus
Query: 64 ggcagataccgcagtacttcatcatcgggtgcgcggaggtgttcaccttcgtggggcagc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggcagataccgcagtacttcatcatcgggtgcgcggaggtgttcaccttcgtggggcagc 60
Query: 124 tggagttcttctacgaccaggcgcccgacgccatgaggagcatgtgctccgcgctgtcgc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tggagttcttctacgaccaggcgcccgacgccatgaggagcatgtgctccgcgctgtcgc 120
Query: 184 tcaccaccgtcgcgctcggcaactacctcagcacggtcctggtgaccatcgtcacccaca 243
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 121 tcaccaccgtcgcgctcggcaactacctcagcacggtgctggtgaccatcgtcacgcaca 180
Query: 244 tcaccaccaggcacggccgcatcgggtggatcccggagaacctcaaccgcggccacctcg 303
||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 181 tcaccaccaggaacggcaacatcgggtggatcccggagaacctcaaccggggccacctcg 240
Query: 304 actacttcttctggctgctcgccgtgctcagccttctcaacttccttgcctacctcgtca 363
|||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||
Sbjct: 241 actacttcttctggctgctcgccgtgctcagcctcctcaacttcctcgtctacctcgtca 300
Query: 364 tcgccagctggtacaagtacaagaagacggccgatgattaccctggcgccaaaggggagc 423
|||||| ||||||||||||||||||||||||||||||| ||| | ||||||||||||||
Sbjct: 301 tcgccacctggtacaagtacaagaagacggccgatgatatcccggacgccaaaggggagc 360
Query: 424 ac 425
||
Sbjct: 361 ac 362
>gb|BM318320.1|BM318320 PI1_77_C01.g9_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 556
Score = 492 bits (248), Expect = e-137
Identities = 298/315 (94%)
Strand = Plus / Plus
Query: 111 ttcgtggggcagctggagttcttctacgaccaggcgcccgacgccatgaggagcatgtgc 170
|||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttcgtgggccagctggagtttttntacgaccaggcgcccgacgccatgaggagcatgtgc 60
Query: 171 tccgcgctgtcgctcaccaccgtcgcgctcggcaactacctcagcacggtcctggtgacc 230
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 61 tccgcgctgtcgctcaccaccgtcgcgctcggcaactacctcagcacggtgctggtgacc 120
Query: 231 atcgtcacccacatcaccaccaggcacggccgcatcgggtggatcccggagaacctcaac 290
|||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 121 atcgtcacgcacatcaccaccaggaacggcaacatcgggtggatcccggagaacctcaac 180
Query: 291 cgcggccacctcgactacttcttctggctgctcgccgtgctcagccttctcaacttcctt 350
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 181 cggggccacctcgactacttcttctggctgctcgccgtgctcagcctcctcaacttcctc 240
Query: 351 gcctacctcgtcatcgccagctggtacaagtacaagaagacggccgatgattaccctggc 410
| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||| | |
Sbjct: 241 gtctacctcgtcatcgccacctggtacaagtacaagaagacggccgatgatatcccggac 300
Query: 411 gccaaaggggagcac 425
|||||||||||||||
Sbjct: 301 gccaaaggggagcac 315
>gb|BG049572.1|BG049572 EM1_6_A04.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 444
Score = 280 bits (141), Expect = 1e-073
Identities = 180/193 (93%)
Strand = Plus / Plus
Query: 233 cgtcacccacatcaccaccaggcacggccgcatcgggtggatcccggagaacctcaaccg 292
|||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 1 cgtcacgcacatcaccaccaggaacggcaacatcgggtggatcccggagaacctcaaccg 60
Query: 293 cggccacctcgactacttcttctggctgctcgccgtgctcagccttctcaacttccttgc 352
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 61 gggccacctcgactacttcttctggctgctcgccgtgctcagcctcctcaacttcctggt 120
Query: 353 ctacctcgtcatcgccagctggtacaagtacaagaagacggccgatgattaccctggcgc 412
||||||||||||||||| ||||||||||||||||||||||||||||||| ||| | |||
Sbjct: 121 ctacctcgtcatcgccacctggtacaagtacaagaagacggccgatgatatcccggacgc 180
Query: 413 caaaggggagcac 425
|||||||||||||
Sbjct: 181 caaaggggagcac 193
>gb|CW375588.1|CW375588 fsbb001f053a12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f053a12, DNA
sequence
Length = 396
Score = 268 bits (135), Expect = 5e-070
Identities = 150/155 (96%)
Strand = Plus / Minus
Query: 12 gcgcggcacggcctgtacggcgaggacgacatcgtgcccatctccatctgctggcagata 71
||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||
Sbjct: 155 gcgcggcacggcctgtacggcaaggacgaccacgtgcccatctccatcttctggcagata 96
Query: 72 ccgcagtacttcatcatcgggtgcgcggaggtgttcaccttcgtggggcagctggagttc 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ccgcagtacttcatcatcgggtgcgcggaggtgttcaccttcgtggggcagctggagttc 36
Query: 132 ttctacgaccaggcgcccgacgccatgaggagcat 166
|| ||||||||||||||||||||||||||||||||
Sbjct: 35 ttatacgaccaggcgcccgacgccatgaggagcat 1
>gb|BE364705.2|BE364705 PI1_14_A03.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 364
Score = 258 bits (130), Expect = 5e-067
Identities = 172/186 (92%)
Strand = Plus / Plus
Query: 240 cacatcaccaccaggcacggccgcatcgggtggatcccggagaacctcaaccgcggccac 299
||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||| |
Sbjct: 3 cacatcaccaccaggaacggcaacatcgggtggatcccggagaacctcaaccggggcccc 62
Query: 300 ctcgactacttcttctggctgctcgccgtgctcagccttctcaacttccttgcctacctc 359
|||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||
Sbjct: 63 ctcgactacttcttctggctgctcgccgtgctcagcctcctcaacttcctcgtctacctg 122
Query: 360 gtcatcgccagctggtacaagtacaagaagacggccgatgattaccctggcgccaaaggg 419
|||||||||| ||||||||||||||||||||||||||||||| ||| | ||||||||||
Sbjct: 123 gtcatcgccacctggtacaagtacaagaagacggccgatgatatcccggacgccaaaggg 182
Query: 420 gagcac 425
||||||
Sbjct: 183 gagcac 188
>gb|CW214664.1|CW214664 104_646_11194133_148_37052_019 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11194133, DNA
sequence
Length = 707
Score = 186 bits (94), Expect = 2e-045
Identities = 118/126 (93%)
Strand = Plus / Plus
Query: 300 ctcgactacttcttctggctgctcgccgtgctcagccttctcaacttccttgcctacctc 359
|||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||
Sbjct: 1 ctcgactacttcttctggctgctcgccgtgctcagcctcctcaacttcctcgtctacctc 60
Query: 360 gtcatcgccagctggtacaagtacaagaagacggccgatgattaccctggcgccaaaggg 419
|||||||||| ||||||||||||||||||||||||||||||| ||| | ||||||||||
Sbjct: 61 gtcatcgccacctggtacaagtacaagaagacggccgatgatatcccggacgccaaaggg 120
Query: 420 gagcac 425
||||||
Sbjct: 121 gagcac 126
>gb|CW270173.1|CW270173 104_741_11402265_148_35326_035 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11402265, DNA
sequence
Length = 605
Score = 87.7 bits (44), Expect = 1e-015
Identities = 62/68 (91%)
Strand = Plus / Minus
Query: 97 cggaggtgttcaccttcgtggggcagctggagttcttctacgaccaggcgcccgacgcca 156
||||||||||||| ||| | |||||| ||||||||||||||||||||||||||||||| |
Sbjct: 378 cggaggtgttcacgttcatcgggcagatggagttcttctacgaccaggcgcccgacgcga 319
Query: 157 tgaggagc 164
|| |||||
Sbjct: 318 tgcggagc 311
Score = 73.8 bits (37), Expect = 2e-011
Identities = 103/125 (82%)
Strand = Plus / Minus
Query: 266 cgggtggatcccggagaacctcaaccgcggccacctcgactacttcttctggctgctcgc 325
|||||||||||| || || ||||||| | |||||||||||||||||||||||||||||
Sbjct: 209 cgggtggatccccgacgacatcaaccgggcgcacctcgactacttcttctggctgctcgc 150
Query: 326 cgtgctcagccttctcaacttccttgcctacctcgtcatcgccagctggtacaagtacaa 385
| ||||| || | ||||||| | |||||| ||||||| ||||||||| ||||||
Sbjct: 149 catgctctgcgtcggcaacttcggcgtctacctgctcatcgcgcgctggtacacgtacaa 90
Query: 386 gaaga 390
|||||
Sbjct: 89 gaaga 85
>gb|CW443161.1|CW443161 fsbb001f163c01f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f163c01, DNA
sequence
Length = 388
Score = 87.7 bits (44), Expect = 1e-015
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 97 cggaggtgttcaccttcgtggggcagctggagttcttctacgaccaggcgcccgacgcca 156
||||||||||||| ||| | |||||| ||||||||||||||||||||||||||||||| |
Sbjct: 271 cggaggtgttcacgttcatcgggcagatggagttcttctacgaccaggcgcccgacgcga 330
Query: 157 tgaggagc 164
|| |||||
Sbjct: 331 tgcggagc 338
>gb|BE597944.1|BE597944 PI1_67_D07.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 584
Score = 87.7 bits (44), Expect = 1e-015
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 97 cggaggtgttcaccttcgtggggcagctggagttcttctacgaccaggcgcccgacgcca 156
||||||||||||| ||| | |||||| ||||||||||||||||||||||||||||||| |
Sbjct: 211 cggaggtgttcacgttcatcgggcagatggagttcttctacgaccaggcgcccgacgcga 270
Query: 157 tgaggagc 164
|| |||||
Sbjct: 271 tgcggagc 278
Score = 73.8 bits (37), Expect = 2e-011
Identities = 103/125 (82%)
Strand = Plus / Plus
Query: 266 cgggtggatcccggagaacctcaaccgcggccacctcgactacttcttctggctgctcgc 325
|||||||||||| || || ||||||| | |||||||||||||||||||||||||||||
Sbjct: 380 cgggtggatccccgacgacatcaaccgggcgcacctcgactacttcttctggctgctcgc 439
Query: 326 cgtgctcagccttctcaacttccttgcctacctcgtcatcgccagctggtacaagtacaa 385
| ||||| || | ||||||| | |||||| ||||||| ||||||||| ||||||
Sbjct: 440 catgctctgcgtcggcaacttcggcgtctacctgctcatcgcgcgctggtacacgtacaa 499
Query: 386 gaaga 390
|||||
Sbjct: 500 gaaga 504
>gb|BG605769.1|BG605769 RHIZ2_81_C06.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 700
Score = 87.7 bits (44), Expect = 1e-015
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 97 cggaggtgttcaccttcgtggggcagctggagttcttctacgaccaggcgcccgacgcca 156
||||||||||||| ||| | |||||| ||||||||||||||||||||||||||||||| |
Sbjct: 156 cggaggtgttcacgttcatcgggcagatggagttcttctacgaccaggcgcccgacgcga 215
Query: 157 tgaggagc 164
|| |||||
Sbjct: 216 tgcggagc 223
Score = 73.8 bits (37), Expect = 2e-011
Identities = 103/125 (82%)
Strand = Plus / Plus
Query: 266 cgggtggatcccggagaacctcaaccgcggccacctcgactacttcttctggctgctcgc 325
|||||||||||| || || ||||||| | |||||||||||||||||||||||||||||
Sbjct: 325 cgggtggatccccgacgacatcaaccgggcgcacctcgactacttcttctggctgctcgc 384
Query: 326 cgtgctcagccttctcaacttccttgcctacctcgtcatcgccagctggtacaagtacaa 385
| ||||| || | ||||||| | |||||| ||||||| ||||||||| ||||||
Sbjct: 385 catgctctgcgtcggcaacttcggcgtctacctgctcatcgcgcgctggtacacgtacaa 444
Query: 386 gaaga 390
|||||
Sbjct: 445 gaaga 449
>gb|BM323395.1|BM323395 PIC1_18_G08.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 498
Score = 87.7 bits (44), Expect = 1e-015
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 97 cggaggtgttcaccttcgtggggcagctggagttcttctacgaccaggcgcccgacgcca 156
||||||||||||| ||| | |||||| ||||||||||||||||||||||||||||||| |
Sbjct: 134 cggaggtgttcacgttcatcgggcagatggagttcttctacgaccaggcgcccgacgcga 193
Query: 157 tgaggagc 164
|| |||||
Sbjct: 194 tgcggagc 201
Score = 73.8 bits (37), Expect = 2e-011
Identities = 103/125 (82%)
Strand = Plus / Plus
Query: 266 cgggtggatcccggagaacctcaaccgcggccacctcgactacttcttctggctgctcgc 325
|||||||||||| || || ||||||| | |||||||||||||||||||||||||||||
Sbjct: 303 cgggtggatccccgacgacatcaaccgggcgcacctcgactacttcttctggctgctcgc 362
Query: 326 cgtgctcagccttctcaacttccttgcctacctcgtcatcgccagctggtacaagtacaa 385
| ||||| || | ||||||| | |||||| ||||||| ||||||||| ||||||
Sbjct: 363 catgctctgcgtcggcaacttcggcgtctacctgctcatcgcgcgctggtacacgtacaa 422
Query: 386 gaaga 390
|||||
Sbjct: 423 gaaga 427
>gb|CX621607.1|CX621607 GABR1_59_C10.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_59_C10_A002 3', mRNA sequence
Length = 553
Score = 87.7 bits (44), Expect = 1e-015
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 97 cggaggtgttcaccttcgtggggcagctggagttcttctacgaccaggcgcccgacgcca 156
||||||||||||| ||| | |||||| ||||||||||||||||||||||||||||||| |
Sbjct: 165 cggaggtgttcacgttcatcgggcagatggagttcttctacgaccaggcgcccgacgcga 224
Query: 157 tgaggagc 164
|| |||||
Sbjct: 225 tgcggagc 232
Score = 73.8 bits (37), Expect = 2e-011
Identities = 103/125 (82%)
Strand = Plus / Plus
Query: 266 cgggtggatcccggagaacctcaaccgcggccacctcgactacttcttctggctgctcgc 325
|||||||||||| || || ||||||| | |||||||||||||||||||||||||||||
Sbjct: 334 cgggtggatccccgacgacatcaaccgggcgcacctcgactacttcttctggctgctcgc 393
Query: 326 cgtgctcagccttctcaacttccttgcctacctcgtcatcgccagctggtacaagtacaa 385
| ||||| || | ||||||| | |||||| ||||||| ||||||||| ||||||
Sbjct: 394 catgctctgcgtcggcaacttcggcgtctacctgctcatcgcgcgctggtacacgtacaa 453
Query: 386 gaaga 390
|||||
Sbjct: 454 gaaga 458
>gb|CX622799.1|CX622799 GABR1_66_B12.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_66_B12_A002 3', mRNA sequence
Length = 739
Score = 79.8 bits (40), Expect = 3e-013
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 97 cggaggtgttcaccttcgtggggcagctggagttcttctacgaccaggcgcccgacgcca 156
||||||||||||| ||| | |||||| |||||||||| |||||||||||||||||||| |
Sbjct: 111 cggaggtgttcacgttcatcgggcagatggagttcttttacgaccaggcgcccgacgcga 170
Query: 157 tgaggagc 164
|| |||||
Sbjct: 171 tgcggagc 178
Score = 60.0 bits (30), Expect = 2e-007
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 266 cgggtggatcccggagaacctcaaccgcggccacctcgactacttcttctggctgctcgc 325
|||||||||||| || || ||||||| | |||||||||||||| ||||||||||||||
Sbjct: 280 cgggtggatccccgacgacatcaaccgggcgcacctcgactactttttctggctgctcgc 339
Query: 326 cgtgct 331
| ||||
Sbjct: 340 catgct 345
>gb|BE600431.1|BE600431 PI1_96_B11.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 536
Score = 73.8 bits (37), Expect = 2e-011
Identities = 103/125 (82%)
Strand = Plus / Plus
Query: 266 cgggtggatcccggagaacctcaaccgcggccacctcgactacttcttctggctgctcgc 325
|||||||||||| || || ||||||| | |||||||||||||||||||||||||||||
Sbjct: 80 cgggtggatccccgacgacatcaaccgggcgcacctcgactacttcttctggctgctcgc 139
Query: 326 cgtgctcagccttctcaacttccttgcctacctcgtcatcgccagctggtacaagtacaa 385
| ||||| || | ||||||| | |||||| ||||||| ||||||||| ||||||
Sbjct: 140 catgctctgcgtcggcaacttcggcgtctacctgctcatcgcgcgctggtacacgtacaa 199
Query: 386 gaaga 390
|||||
Sbjct: 200 gaaga 204
>gb|BG356829.1|BG356829 OV2_10_E05.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 568
Score = 73.8 bits (37), Expect = 2e-011
Identities = 103/125 (82%)
Strand = Plus / Plus
Query: 266 cgggtggatcccggagaacctcaaccgcggccacctcgactacttcttctggctgctcgc 325
|||||||||||| || || ||||||| | |||||||||||||||||||||||||||||
Sbjct: 80 cgggtggatccccgacgacatcaaccgggcgcacctcgactacttcttctggctgctcgc 139
Query: 326 cgtgctcagccttctcaacttccttgcctacctcgtcatcgccagctggtacaagtacaa 385
| ||||| || | ||||||| | |||||| ||||||| ||||||||| ||||||
Sbjct: 140 catgctctgcgtcggcaacttcggcgtctacctgctcatcgcgcgctggtacacgtacaa 199
Query: 386 gaaga 390
|||||
Sbjct: 200 gaaga 204
>gb|CW210137.1|CW210137 104_640_11189633_116_37430_071 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11189633, DNA
sequence
Length = 694
Score = 71.9 bits (36), Expect = 7e-011
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 288 aaccgcggccacctcgactacttcttctggctgctcgccgtgctcagc 335
|||| |||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 451 aaccacggccacctcgactacttctactggctgctcgccgcgctcagc 404
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 125 ggagttcttctacgaccagg 144
||||||||||||||||||||
Sbjct: 611 ggagttcttctacgaccagg 592
>gb|CW428110.1|CW428110 fsbb001f140h15f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f140h15, DNA
sequence
Length = 679
Score = 71.9 bits (36), Expect = 7e-011
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 288 aaccgcggccacctcgactacttcttctggctgctcgccgtgctcagc 335
|||| |||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 417 aaccacggccacctcgactacttctactggctgctcgccgcgctcagc 370
>gb|CW440071.1|CW440071 fsbb001f158i14k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f158i14, DNA
sequence
Length = 469
Score = 71.9 bits (36), Expect = 7e-011
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 288 aaccgcggccacctcgactacttcttctggctgctcgccgtgctcagc 335
|||| |||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 160 aaccacggccacctcgactacttctactggctgctcgccgcgctcagc 113
>gb|CW037029.1|CW037029 104_268_10504101_115_30382 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10504101, DNA
sequence
Length = 580
Score = 69.9 bits (35), Expect = 3e-010
Identities = 49/54 (90%)
Strand = Plus / Minus
Query: 282 aacctcaaccgcggccacctcgactacttcttctggctgctcgccgtgctcagc 335
||||| |||||||||||| |||||||||||| |||||||||||||| ||| |||
Sbjct: 413 aacctgaaccgcggccacgtcgactacttctactggctgctcgccgcgctnagc 360
>gb|CL196237.1|CL196237 104_422_10942921_114_32318_011 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10942921, DNA
sequence
Length = 605
Score = 67.9 bits (34), Expect = 1e-009
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 282 aacctcaaccgcggccacctcgactacttcttctggctgctcgccg 327
||||| |||||||||||| |||||||||||| ||||||||||||||
Sbjct: 186 aacctgaaccgcggccacgtcgactacttctactggctgctcgccg 141
>gb|CW036704.1|CW036704 104_268_10503921_115_30382 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10503921, DNA
sequence
Length = 687
Score = 67.9 bits (34), Expect = 1e-009
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 282 aacctcaaccgcggccacctcgactacttcttctggctgctcgccg 327
||||| |||||||||||| |||||||||||| ||||||||||||||
Sbjct: 413 aacctgaaccgcggccacgtcgactacttctactggctgctcgccg 368
>gb|CW081885.1|CW081885 104_422_10942921_114_32347_011 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10942921, DNA
sequence
Length = 607
Score = 67.9 bits (34), Expect = 1e-009
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 282 aacctcaaccgcggccacctcgactacttcttctggctgctcgccg 327
||||| |||||||||||| |||||||||||| ||||||||||||||
Sbjct: 185 aacctgaaccgcggccacgtcgactacttctactggctgctcgccg 140
>gb|CW328745.1|CW328745 104_825_11479474_116_36002_047 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479474, DNA
sequence
Length = 627
Score = 67.9 bits (34), Expect = 1e-009
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 282 aacctcaaccgcggccacctcgactacttcttctggctgctcgccg 327
||||| |||||||||||| |||||||||||| ||||||||||||||
Sbjct: 146 aacctgaaccgcggccacgtcgactacttctactggctgctcgccg 101
>gb|BE599254.1|BE599254 PI1_87_C07.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 388
Score = 67.9 bits (34), Expect = 1e-009
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 282 aacctcaaccgcggccacctcgactacttcttctggctgctcgccg 327
||||| |||||||||||| |||||||||||| ||||||||||||||
Sbjct: 88 aacctgaaccgcggccacgtcgactacttctactggctgctcgccg 133
>gb|BG464873.1|BG464873 EM1_35_E05.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 421
Score = 67.9 bits (34), Expect = 1e-009
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 282 aacctcaaccgcggccacctcgactacttcttctggctgctcgccg 327
||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 320 aacctcaaccgcgcgcacctcgactacttctactggctgctcgccg 365
Score = 44.1 bits (22), Expect = 0.015
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 125 ggagttcttctacgaccaggcgcccgacgc 154
|||||||||||||||||||| ||||||||
Sbjct: 166 ggagttcttctacgaccaggtccccgacgc 195
>gb|CD207800.1|CD207800 HS1_35_F04.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_35_F04_A012 3', mRNA sequence
Length = 589
Score = 67.9 bits (34), Expect = 1e-009
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 282 aacctcaaccgcggccacctcgactacttcttctggctgctcgccg 327
||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 300 aacctcaaccgcgcgcacctcgactacttctactggctgctcgccg 345
Score = 44.1 bits (22), Expect = 0.015
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 125 ggagttcttctacgaccaggcgcccgacgc 154
|||||||||||||||||||| ||||||||
Sbjct: 146 ggagttcttctacgaccaggtccccgacgc 175
>gb|CD221689.1|CD221689 CCC1_70_G07.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_70_G07_A007 3', mRNA sequence
Length = 534
Score = 67.9 bits (34), Expect = 1e-009
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 282 aacctcaaccgcggccacctcgactacttcttctggctgctcgccg 327
||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 294 aacctcaaccgcgcgcacctcgactacttctactggctgctcgccg 339
Score = 44.1 bits (22), Expect = 0.015
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 125 ggagttcttctacgaccaggcgcccgacgc 154
|||||||||||||||||||| ||||||||
Sbjct: 140 ggagttcttctacgaccaggtccccgacgc 169
>gb|CD224425.1|CD224425 CCC1_34_B10.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_34_B10_A007 3', mRNA sequence
Length = 654
Score = 67.9 bits (34), Expect = 1e-009
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 282 aacctcaaccgcggccacctcgactacttcttctggctgctcgccg 327
||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 421 aacctcaaccgcgcgcacctcgactacttctactggctgctcgccg 466
Score = 44.1 bits (22), Expect = 0.015
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 125 ggagttcttctacgaccaggcgcccgacgc 154
|||||||||||||||||||| ||||||||
Sbjct: 267 ggagttcttctacgaccaggtccccgacgc 296
>gb|CD224596.1|CD224596 CCC1_35_A08.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_35_A08_A007 3', mRNA sequence
Length = 631
Score = 67.9 bits (34), Expect = 1e-009
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 282 aacctcaaccgcggccacctcgactacttcttctggctgctcgccg 327
||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 370 aacctcaaccgcgcgcacctcgactacttctactggctgctcgccg 415
Score = 44.1 bits (22), Expect = 0.015
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 125 ggagttcttctacgaccaggcgcccgacgc 154
|||||||||||||||||||| ||||||||
Sbjct: 216 ggagttcttctacgaccaggtccccgacgc 245
>gb|CD231398.1|CD231398 SS1_16_F09.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_16_F09_A012 3', mRNA sequence
Length = 693
Score = 67.9 bits (34), Expect = 1e-009
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 282 aacctcaaccgcggccacctcgactacttcttctggctgctcgccg 327
||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 420 aacctcaaccgcgcgcacctcgactacttctactggctgctcgccg 465
Score = 44.1 bits (22), Expect = 0.015
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 125 ggagttcttctacgaccaggcgcccgacgc 154
|||||||||||||||||||| ||||||||
Sbjct: 266 ggagttcttctacgaccaggtccccgacgc 295
>gb|CD235665.1|CD235665 SS1_37_D01.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_37_D01_A012 3', mRNA sequence
Length = 512
Score = 67.9 bits (34), Expect = 1e-009
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 282 aacctcaaccgcggccacctcgactacttcttctggctgctcgccg 327
||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 255 aacctcaaccgcgcgcacctcgactacttctactggctgctcgccg 300
Score = 44.1 bits (22), Expect = 0.015
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 125 ggagttcttctacgaccaggcgcccgacgc 154
|||||||||||||||||||| ||||||||
Sbjct: 101 ggagttcttctacgaccaggtccccgacgc 130
>gb|CD429079.1|CD429079 ETH1_2_F04.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_2_F04_A002 3', mRNA sequence
Length = 643
Score = 67.9 bits (34), Expect = 1e-009
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 282 aacctcaaccgcggccacctcgactacttcttctggctgctcgccg 327
||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 372 aacctcaaccgcgcgcacctcgactacttctactggctgctcgccg 417
Score = 44.1 bits (22), Expect = 0.015
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 125 ggagttcttctacgaccaggcgcccgacgc 154
|||||||||||||||||||| ||||||||
Sbjct: 218 ggagttcttctacgaccaggtccccgacgc 247
>gb|CD430019.1|CD430019 ETH1_13_D07.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_13_D07_A002 3', mRNA sequence
Length = 655
Score = 67.9 bits (34), Expect = 1e-009
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 282 aacctcaaccgcggccacctcgactacttcttctggctgctcgccg 327
||||| |||||||||||| |||||||||||| ||||||||||||||
Sbjct: 244 aacctgaaccgcggccacgtcgactacttctactggctgctcgccg 289
>gb|CD430646.1|CD430646 ETH1_20_H12.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_20_H12_A002 3', mRNA sequence
Length = 677
Score = 67.9 bits (34), Expect = 1e-009
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 282 aacctcaaccgcggccacctcgactacttcttctggctgctcgccg 327
||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 418 aacctcaaccgcgcgcacctcgactacttctactggctgctcgccg 463
>gb|CD462252.1|CD462252 SA1_40_D04.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_40_D04_A002 3', mRNA sequence
Length = 656
Score = 67.9 bits (34), Expect = 1e-009
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 282 aacctcaaccgcggccacctcgactacttcttctggctgctcgccg 327
||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 415 aacctcaaccgcgcgcacctcgactacttctactggctgctcgccg 460
Score = 44.1 bits (22), Expect = 0.015
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 125 ggagttcttctacgaccaggcgcccgacgc 154
|||||||||||||||||||| ||||||||
Sbjct: 261 ggagttcttctacgaccaggtccccgacgc 290
>gb|CF072211.1|CF072211 FE1_6_A03.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_6_A03_A002 3', mRNA sequence
Length = 380
Score = 67.9 bits (34), Expect = 1e-009
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 282 aacctcaaccgcggccacctcgactacttcttctggctgctcgccg 327
||||| |||||||||||| |||||||||||| ||||||||||||||
Sbjct: 157 aacctgaaccgcggccacgtcgactacttctactggctgctcgccg 202
>gb|CF433270.1|CF433270 NIT1_26_B07.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_26_B07_A002 3', mRNA sequence
Length = 702
Score = 67.9 bits (34), Expect = 1e-009
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 282 aacctcaaccgcggccacctcgactacttcttctggctgctcgccg 327
||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 238 aacctcaaccgcgcgcacctcgactacttctactggctgctcgccg 283
Score = 44.1 bits (22), Expect = 0.015
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 125 ggagttcttctacgaccaggcgcccgacgc 154
|||||||||||||||||||| ||||||||
Sbjct: 84 ggagttcttctacgaccaggtccccgacgc 113
>gb|CF757575.1|CF757575 DSAF1_19_F07.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_19_F07_A011 3', mRNA sequence
Length = 419
Score = 67.9 bits (34), Expect = 1e-009
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 282 aacctcaaccgcggccacctcgactacttcttctggctgctcgccg 327
||||| |||||||||||| |||||||||||| ||||||||||||||
Sbjct: 72 aacctgaaccgcggccacgtcgactacttctactggctgctcgccg 117
>gb|CF758259.1|CF758259 DSAF1_29_E05.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_29_E05_A011 3', mRNA sequence
Length = 431
Score = 67.9 bits (34), Expect = 1e-009
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 282 aacctcaaccgcggccacctcgactacttcttctggctgctcgccg 327
||||| |||||||||||| |||||||||||| ||||||||||||||
Sbjct: 206 aacctgaaccgcggccacgtcgactacttctactggctgctcgccg 251
>gb|CF758895.1|CF758895 DSAF1_37_H02.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_37_H02_A011 3', mRNA sequence
Length = 433
Score = 67.9 bits (34), Expect = 1e-009
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 282 aacctcaaccgcggccacctcgactacttcttctggctgctcgccg 327
||||| |||||||||||| |||||||||||| ||||||||||||||
Sbjct: 206 aacctgaaccgcggccacgtcgactacttctactggctgctcgccg 251
>gb|CN126061.1|CN126061 RHOH1_15_A03.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_15_A03_A002 3', mRNA sequence
Length = 795
Score = 67.9 bits (34), Expect = 1e-009
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 282 aacctcaaccgcggccacctcgactacttcttctggctgctcgccg 327
||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 333 aacctcaaccgcgcgcacctcgactacttctactggctgctcgccg 378
>gb|CX608378.1|CX608378 ANR1_38_F10.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_38_F10_A002 3', mRNA sequence
Length = 570
Score = 67.9 bits (34), Expect = 1e-009
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 282 aacctcaaccgcggccacctcgactacttcttctggctgctcgccg 327
||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 298 aacctcaaccgcgcgcacctcgactacttctactggctgctcgccg 343
Score = 44.1 bits (22), Expect = 0.015
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 125 ggagttcttctacgaccaggcgcccgacgc 154
|||||||||||||||||||| ||||||||
Sbjct: 144 ggagttcttctacgaccaggtccccgacgc 173
>gb|CX609358.1|CX609358 ANR1_12_E10.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_12_E10_A002 3', mRNA sequence
Length = 760
Score = 67.9 bits (34), Expect = 1e-009
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 282 aacctcaaccgcggccacctcgactacttcttctggctgctcgccg 327
||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 549 aacctcaaccgcgcgcacctcgactacttctactggctgctcgccg 594
Score = 44.1 bits (22), Expect = 0.015
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 125 ggagttcttctacgaccaggcgcccgacgc 154
|||||||||||||||||||| ||||||||
Sbjct: 395 ggagttcttctacgaccaggtccccgacgc 424
>gb|CX609862.1|CX609862 ANR1_15_E05.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_15_E05_A002 3', mRNA sequence
Length = 805
Score = 67.9 bits (34), Expect = 1e-009
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 282 aacctcaaccgcggccacctcgactacttcttctggctgctcgccg 327
||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 347 aacctcaaccgcgcgcacctcgactacttctactggctgctcgccg 392
Score = 44.1 bits (22), Expect = 0.015
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 125 ggagttcttctacgaccaggcgcccgacgc 154
|||||||||||||||||||| ||||||||
Sbjct: 193 ggagttcttctacgaccaggtccccgacgc 222
>gb|CX611676.1|CX611676 ANR1_26_C02.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_26_C02_A002 3', mRNA sequence
Length = 813
Score = 67.9 bits (34), Expect = 1e-009
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 282 aacctcaaccgcggccacctcgactacttcttctggctgctcgccg 327
||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 541 aacctcaaccgcgcgcacctcgactacttctactggctgctcgccg 586
Score = 44.1 bits (22), Expect = 0.015
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 125 ggagttcttctacgaccaggcgcccgacgc 154
|||||||||||||||||||| ||||||||
Sbjct: 387 ggagttcttctacgaccaggtccccgacgc 416
>gb|CW292535.1|CW292535 104_772_11414140_116_35580_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11414140, DNA
sequence
Length = 672
Score = 65.9 bits (33), Expect = 4e-009
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 97 cggaggtgttcaccttcgtggggcagctggagttcttctacgaccaggcgcccgacg 153
|||||||||||| | |||||||||||||||||||||| ||| |||||||||||||
Sbjct: 628 cggaggtgttcatgtacgtggggcagctggagttcttcaacgggcaggcgcccgacg 572
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 167,310
Number of Sequences: 832831
Number of extensions: 167310
Number of successful extensions: 49972
Number of sequences better than 0.5: 202
Number of HSP's better than 0.5 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49583
Number of HSP's gapped (non-prelim): 375
length of query: 607
length of database: 491,359,669
effective HSP length: 19
effective length of query: 588
effective length of database: 475,535,880
effective search space: 279615097440
effective search space used: 279615097440
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)