BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3198841.2.2
(602 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF430329.1|CF430329 PH1_27_A10.g1_A002 Phosphorous-defic... 690 0.0
gb|AW924784.1|AW924784 WS1_72_D10.b1_A002 Water-stressed 1 ... 686 0.0
gb|AW745625.1|AW745625 WS1_36_B11.b1_A002 Water-stressed 1 ... 678 0.0
gb|AW746572.1|AW746572 WS1_54_H03.b1_A002 Water-stressed 1 ... 569 e-160
gb|CD213137.1|CD213137 HS1_28_E12.g1_A012 Heat-shocked seed... 422 e-116
gb|CN130931.1|CN130931 RHOH1_44_G05.g1_A002 Acid- and alkal... 398 e-109
gb|CD211102.1|CD211102 HS1_61_B11.b1_A012 Heat-shocked seed... 317 7e-085
gb|CD205518.1|CD205518 HS1_14_F07.g1_A012 Heat-shocked seed... 307 6e-082
gb|CD229180.1|CD229180 CCC1_13_B11.g1_A007 Callus culture/c... 268 5e-070
gb|CD462309.1|CD462309 SA1_40_H09.g1_A002 Salicylic acid-tr... 254 8e-066
gb|AW677678.1|AW677678 WS1_10_F06.b1_A002 Water-stressed 1 ... 176 2e-042
gb|CN129758.1|CN129758 RHOH1_37_F03.b1_A002 Acid- and alkal... 147 1e-033
gb|CW368754.1|CW368754 fsbb001f042n19f0 Sorghum methylation... 127 1e-027
gb|CD209780.1|CD209780 HS1_54_F10.g1_A012 Heat-shocked seed... 96 4e-018
gb|CL173031.1|CL173031 104_376_10890597_148_31794_117 Sorgh... 82 7e-014
gb|CW305810.1|CW305810 104_791_11466505_148_36273_011 Sorgh... 78 1e-012
gb|CW345959.1|CW345959 104_849_11488774_116_36216_091 Sorgh... 78 1e-012
gb|CW479679.1|CW479679 fsbb001f238f05k0 Sorghum methylation... 78 1e-012
gb|BF176663.1|BF176663 EM1_1_E12.g1_A002 Embryo 1 (EM1) Sor... 78 1e-012
gb|CD205432.1|CD205432 HS1_14_E04.b1_A012 Heat-shocked seed... 78 1e-012
gb|CD219825.1|CD219825 CCC1_59_D11.b1_A007 Callus culture/c... 78 1e-012
gb|CD228802.1|CD228802 CCC1_10_H08.b1_A007 Callus culture/c... 78 1e-012
gb|CD461878.1|CD461878 SA1_31_G11.b1_A002 Salicylic acid-tr... 78 1e-012
gb|CF070892.1|CF070892 FE1_14_B04.b1_A002 Iron-deficient se... 78 1e-012
gb|CF770416.1|CF770416 DSBF1_7_D06.g1_A010 Drought-stressed... 78 1e-012
gb|BE599289.1|BE599289 PI1_87_F09.g1_A002 Pathogen induced ... 70 3e-010
gb|CN138173.1|CN138173 OX1_62_E02.b1_A002 Oxidatively-stres... 70 3e-010
gb|CN133757.1|CN133757 OX1_18_D09.b1_A002 Oxidatively-stres... 54 2e-005
gb|CW345960.1|CW345960 104_849_11488774_148_36215_091 Sorgh... 52 6e-005
gb|CF770333.1|CF770333 DSBF1_7_D06.b1_A010 Drought-stressed... 52 6e-005
gb|CN130862.1|CN130862 RHOH1_44_G05.b1_A002 Acid- and alkal... 52 6e-005
gb|AW678519.1|AW678519 WS1_16_A09.b1_A002 Water-stressed 1 ... 50 2e-004
gb|AW745330.1|AW745330 WS1_33_F10.b1_A002 Water-stressed 1 ... 50 2e-004
gb|AW922066.1|AW922066 LG1_224_B09.b1_A002 Light Grown 1 (L... 50 2e-004
gb|BE367552.1|BE367552 PI1_9_C11.b1_A002 Pathogen induced 1... 50 2e-004
gb|BE592089.1|BE592089 LG1_224_B09.b2_A002 Light Grown 1 (L... 50 2e-004
gb|BE592989.1|BE592989 WS1_93_A01.b1_A002 Water-stressed 1 ... 50 2e-004
gb|BE593477.1|BE593477 WS1_98_C11.b1_A002 Water-stressed 1 ... 50 2e-004
gb|BE594074.1|BE594074 WS1_101_H05.b1_A002 Water-stressed 1... 50 2e-004
gb|BE597470.1|BE597470 PI1_69_H07.b1_A002 Pathogen induced ... 50 2e-004
gb|BG462809.1|BG462809 EM1_45_H01.b1_A002 Embryo 1 (EM1) So... 50 2e-004
gb|BG556794.1|BG556794 EM1_38_F11.b1_A002 Embryo 1 (EM1) So... 50 2e-004
gb|BM324999.1|BM324999 PIC1_38_E05.b1_A002 Pathogen-infecte... 50 2e-004
gb|CD211330.1|CD211330 HS1_59_D10.g1_A012 Heat-shocked seed... 50 2e-004
gb|CD212646.1|CD212646 HS1_6_D03.g1_A012 Heat-shocked seedl... 50 2e-004
gb|CD222882.1|CD222882 CCC1_24_G10.g1_A007 Callus culture/c... 50 2e-004
gb|CD223169.1|CD223169 CCC1_26_H01.g1_A007 Callus culture/c... 50 2e-004
gb|CD229448.1|CD229448 CCC1_15_C04.g1_A007 Callus culture/c... 50 2e-004
gb|CN134496.1|CN134496 OX1_26_E07.g1_A002 Oxidatively-stres... 50 2e-004
gb|CN148626.1|CN148626 WOUND1_57_F11.g1_A002 Wounded leaves... 50 2e-004
gb|CX610090.1|CX610090 ANR1_16_C06.g1_A002 Anaerobic roots ... 50 2e-004
gb|CL167683.1|CL167683 104_364_10810249_114_31802_313 Sorgh... 48 0.001
gb|CD211692.1|CD211692 HS1_63_G09.g1_A012 Heat-shocked seed... 48 0.001
gb|CW110903.1|CW110903 104_484_11103992_148_34526_032 Sorgh... 46 0.004
gb|CW285474.1|CW285474 104_762_11410352_116_35504_020 Sorgh... 44 0.015
gb|CW320467.1|CW320467 104_813_11475028_116_35899_008 Sorgh... 44 0.015
gb|BF177265.1|BF177265 EM1_1_C01.b1_A002 Embryo 1 (EM1) Sor... 44 0.015
gb|BG649153.1|BG649153 EM1_56_H02.b1_A002 Embryo 1 (EM1) So... 42 0.058
>gb|CF430329.1|CF430329 PH1_27_A10.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_27_A10_A002 5', mRNA sequence
Length = 770
Score = 690 bits (348), Expect = 0.0
Identities = 450/478 (94%), Gaps = 6/478 (1%)
Strand = Plus / Plus
Query: 131 caagagctctctgttgtctgatggaaactacaatacagacaagatcaatggttcaaaccc 190
|||| ||||| || ||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 109 caagggctctttgctgtctgatggaaactacaatacagagaagatcaatggttcaaatcc 168
Query: 191 tgatgactatgagaaatttgagaaagggataatgcactatgggtgtccacattatagaag 250
|||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 169 tgatgagtatgagaaatttcagaaagggataatgcagtatgggtgtccacattatagaag 228
Query: 251 gagatgccgcataagagctccttgctgcaatgaaatttttgattgccgacactgccacaa 310
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 229 gagatgccgcataagagctccttgctgcaatgaagtttttgattgccgacactgccacaa 288
Query: 311 tgaaactaagaattccattaaaattgataaaatgaagaggcatgaacttccacgccatga 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tgaaactaagaattccattaaaattgataaaatgaagaggcatgaacttccacgccatga 348
Query: 371 agtgcagcaggttgtatgctcattgtgtggcactgaacaggaggtgcgacaagtatgtat 430
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||
Sbjct: 349 agtgcagcaggttgtatgctcattgtgtggcactgaacaggaggtacaacaagtatgcat 408
Query: 431 ca-attgcggt-gtttgcatggggaagt-acttctgtggtttgtgcaaactcttcgacga 487
|| |||| ||| |||||||||||||||| |||||||||| |||||||||||||| |||||
Sbjct: 409 canattgtggtggtttgcatggggaagtnacttctgtggattgtgcaaactctttgacga 468
Query: 488 tgatgtctctaaacagcagtatcactgcaacggatgtggaatatgtagaatcgga--ggc 545
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||
Sbjct: 469 tgatgtctctaaacagcagtatcactgcaacggatgtggaatatgcagaattggagggga 528
Query: 546 agggagaattccttccactgttcaaaa-gtggatgttgctattcaattgcgctgaaga 602
|||||||||| ||||||||||||| || | |||||||||||||||||||| |||||||
Sbjct: 529 agggagaatttcttccactgttcanaatgcggatgttgctattcaattgctctgaaga 586
>gb|AW924784.1|AW924784 WS1_72_D10.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 574
Score = 686 bits (346), Expect = 0.0
Identities = 397/414 (95%)
Strand = Plus / Plus
Query: 131 caagagctctctgttgtctgatggaaactacaatacagacaagatcaatggttcaaaccc 190
|||| ||||| || ||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 157 caagggctctttgctgtctgatggaaactacaatacagagaagatcaatggttcaaatcc 216
Query: 191 tgatgactatgagaaatttgagaaagggataatgcactatgggtgtccacattatagaag 250
|||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 217 tgatgagtatgagaaatttcagaaagggataatgcagtatgggtgtccacattatagaag 276
Query: 251 gagatgccgcataagagctccttgctgcaatgaaatttttgattgccgacactgccacaa 310
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 277 gagatgccgcataagagctccttgctgcaatgaagtttttgattgccgacactgccacaa 336
Query: 311 tgaaactaagaattccattaaaattgataaaatgaagaggcatgaacttccacgccatga 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tgaaactaagaattccattaaaattgataaaatgaagaggcatgaacttccacgccatga 396
Query: 371 agtgcagcaggttgtatgctcattgtgtggcactgaacaggaggtgcgacaagtatgtat 430
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||
Sbjct: 397 agtgcagcaggttgtatgctcattgtgtggcactgaacaggaggtacaacaagtatgcat 456
Query: 431 caattgcggtgtttgcatggggaagtacttctgtggtttgtgcaaactcttcgacgatga 490
|||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 457 caattgtggtgtttgcatggggaagtacttctgtggattgtgcaaactctttgacgatga 516
Query: 491 tgtctctaaacagcagtatcactgcaacggatgtggaatatgtagaatcggagg 544
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 517 tgtctctaaacagcagtatcactgcaacggatgtggaatatgcagaattggagg 570
>gb|AW745625.1|AW745625 WS1_36_B11.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 591
Score = 678 bits (342), Expect = 0.0
Identities = 387/402 (96%)
Strand = Plus / Plus
Query: 131 caagagctctctgttgtctgatggaaactacaatacagacaagatcaatggttcaaaccc 190
|||| ||||| || ||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 186 caagggctctttgctgtctgatggaaactacaatacagagaagatcaatggttcaaatcc 245
Query: 191 tgatgactatgagaaatttgagaaagggataatgcactatgggtgtccacattatagaag 250
|||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 246 tgatgagtatgagaaatttcagaaagggataatgcagtatgggtgtccacattatagaag 305
Query: 251 gagatgccgcataagagctccttgctgcaatgaaatttttgattgccgacactgccacaa 310
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 306 gagatgccgcataagagctccttgctgcaatgaagtttttgattgccgacactgccacaa 365
Query: 311 tgaaactaagaattccattaaaattgataaaatgaagaggcatgaacttccacgccatga 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tgaaactaagaattccattaaaattgataaaatgaagaggcatgaacttccacgccatga 425
Query: 371 agtgcagcaggttgtatgctcattgtgtggcactgaacaggaggtgcgacaagtatgtat 430
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||
Sbjct: 426 agtgcagcaggttgtatgctcattgtgtggcactgaacaggaggtacaacaagtatgcat 485
Query: 431 caattgcggtgtttgcatggggaagtacttctgtggtttgtgcaaactcttcgacgatga 490
|||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 486 caattgtggtgtttgcatggggaagtacttctgtggattgtgcaaactctttgacgatga 545
Query: 491 tgtctctaaacagcagtatcactgcaacggatgtggaatatg 532
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tgtctctaaacagcagtatcactgcaacggatgtggaatatg 587
>gb|AW746572.1|AW746572 WS1_54_H03.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 528
Score = 569 bits (287), Expect = e-160
Identities = 329/343 (95%)
Strand = Plus / Plus
Query: 131 caagagctctctgttgtctgatggaaactacaatacagacaagatcaatggttcaaaccc 190
|||| ||||| || ||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 186 caagggctctttgctgtctgatggaaactacaatacagagaagatcaatggttcaaatcc 245
Query: 191 tgatgactatgagaaatttgagaaagggataatgcactatgggtgtccacattatagaag 250
|||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 246 tgatgagtatgagaaatttcagaaagggataatgcagtatgggtgtccacattatagaag 305
Query: 251 gagatgccgcataagagctccttgctgcaatgaaatttttgattgccgacactgccacaa 310
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 306 gagatgccgcataagagctccttgctgcaatgaagtttttgattgccgacactgccacaa 365
Query: 311 tgaaactaagaattccattaaaattgataaaatgaagaggcatgaacttccacgccatga 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tgaaactaagaattccattaaaattgataaaatgaagaggcatgaacttccacgccatga 425
Query: 371 agtgcagcaggttgtatgctcattgtgtggcactgaacaggaggtgcgacaagtatgtat 430
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||
Sbjct: 426 agtgcagcaggttgtatgctcattgtgtggcactgaacaggaggtacaacaagtatgcat 485
Query: 431 caattgcggtgtttgcatggggaagtacttctgtggtttgtgc 473
|||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 486 caattgtggtgtttgcatggggaagtacttctgtggattgtgc 528
>gb|CD213137.1|CD213137 HS1_28_E12.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_28_E12_A012 5', mRNA sequence
Length = 641
Score = 422 bits (213), Expect = e-116
Identities = 276/297 (92%)
Strand = Plus / Plus
Query: 131 caagagctctctgttgtctgatggaaactacaatacagacaagatcaatggttcaaaccc 190
|||| ||||| || |||||||||| |||||||||||||| |||| |||||||||||| ||
Sbjct: 342 caagggctctttgctgtctgatgggaactacaatacagagaagaccaatggttcaaatcc 401
Query: 191 tgatgactatgagaaatttgagaaagggataatgcactatgggtgtccacattatagaag 250
|||||| |||||||||||| |||||||||||||||| |||||||||||||||||| ||||
Sbjct: 402 tgatgagtatgagaaatttcagaaagggataatgcagtatgggtgtccacattatcgaag 461
Query: 251 gagatgccgcataagagctccttgctgcaatgaaatttttgattgccgacactgccacaa 310
|| ||| || || ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 462 gaaatgacggatgagagctccttgctgcaatgaagtttttgattgccgacactgccacaa 521
Query: 311 tgaaactaagaattccattaaaattgataaaatgaagaggcatgaacttccacgccatga 370
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaaactaagaattccattaaaattaataaaatgaagaggcatgaacttccacgccatga 581
Query: 371 agtgcagcaggttgtatgctcattgtgtggcactgaacaggaggtgcgacaagtatg 427
||||||||||| |||||||||||||||||||||||| |||||||| | |||||||||
Sbjct: 582 agtgcagcagggtgtatgctcattgtgtggcactgagcaggaggtacaacaagtatg 638
>gb|CN130931.1|CN130931 RHOH1_44_G05.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_44_G05_A002 5', mRNA sequence
Length = 815
Score = 398 bits (201), Expect = e-109
Identities = 228/237 (96%)
Strand = Plus / Plus
Query: 319 agaattccattaaaattgataaaatgaagaggcatgaacttccacgccatgaagtgcagc 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 agaattccattaaaattgataaaatgaagaggcatgaacttccacgccatgaagtgcagc 637
Query: 379 aggttgtatgctcattgtgtggcactgaacaggaggtgcgacaagtatgtatcaattgcg 438
||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||| |
Sbjct: 638 aggttgtatgctcattgtgtggcactgaacaggaggtacaacaagtatgcatcaattgtg 697
Query: 439 gtgtttgcatggggaagtacttctgtggtttgtgcaaactcttcgacgatgatgtctcta 498
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 698 gtgtttgcatggggaagtacttctgtggattgtgcaaactctttgacgatgatgtctcta 757
Query: 499 aacagcagtatcactgcaacggatgtggaatatgtagaatcggaggcagggagaatt 555
|||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct: 758 aacagcagtatcactgcaacggatgtggaatatgcagaattggagggagggagaatt 814
>gb|CD211102.1|CD211102 HS1_61_B11.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_61_B11_A012 3', mRNA sequence
Length = 754
Score = 317 bits (160), Expect = 7e-085
Identities = 187/196 (95%)
Strand = Plus / Plus
Query: 131 caagagctctctgttgtctgatggaaactacaatacagacaagatcaatggttcaaaccc 190
|||| ||||| || ||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 559 caagggctctttgctgtctgatggaaactacaatacagagaagatcaatggttcaaatcc 618
Query: 191 tgatgactatgagaaatttgagaaagggataatgcactatgggtgtccacattatagaag 250
|||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 619 tgatgagtatgagaaatttcagaaagggataatgcagtatgggtgtccacattatagaag 678
Query: 251 gagatgccgcataagagctccttgctgcaatgaaatttttgattgccgacactgccacaa 310
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 679 gagatgccgcataagagctccttgctgcaatgaagtttttgattgccgacactgccacaa 738
Query: 311 tgaaactaagaattcc 326
||||||||||||||||
Sbjct: 739 tgaaactaagaattcc 754
>gb|CD205518.1|CD205518 HS1_14_F07.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_14_F07_A012 5', mRNA sequence
Length = 609
Score = 307 bits (155), Expect = 6e-082
Identities = 182/191 (95%)
Strand = Plus / Plus
Query: 131 caagagctctctgttgtctgatggaaactacaatacagacaagatcaatggttcaaaccc 190
|||| ||||| || ||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 316 caagggctctttgctgtctgatggaaactacaatacagagaagatcaatggttcaaatcc 375
Query: 191 tgatgactatgagaaatttgagaaagggataatgcactatgggtgtccacattatagaag 250
|||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 376 tgatgagtatgagaaatttcagaaagggataatgcagtatgggtgtccacattatagaag 435
Query: 251 gagatgccgcataagagctccttgctgcaatgaaatttttgattgccgacactgccacaa 310
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 436 gagatgccgcataagagctccttgctgcaatgaagtttttgattgccgacactgccacaa 495
Query: 311 tgaaactaaga 321
|||||||||||
Sbjct: 496 tgaaactaaga 506
Score = 180 bits (91), Expect = 1e-043
Identities = 103/107 (96%)
Strand = Plus / Plus
Query: 345 aagaggcatgaacttccacgccatgaagtgcagcaggttgtatgctcattgtgtggcact 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aagaggcatgaacttccacgccatgaagtgcagcaggttgtatgctcattgtgtggcact 562
Query: 405 gaacaggaggtgcgacaagtatgtatcaattgcggtgtttgcatggg 451
||||||||||| | ||||||||| |||||||| ||||||||||||||
Sbjct: 563 gaacaggaggtacaacaagtatgcatcaattgtggtgtttgcatggg 609
>gb|CD229180.1|CD229180 CCC1_13_B11.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_13_B11_A007 5', mRNA sequence
Length = 654
Score = 268 bits (135), Expect = 5e-070
Identities = 172/183 (93%), Gaps = 1/183 (0%)
Strand = Plus / Plus
Query: 421 aagtatgtatcaattgcggtgtttgcatggggaagtacttctgtggtttgtgcaaactct 480
||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 7 aagtatgcatcaattgtggtgtttgcatggggaagtacttctgtggattgtgcaaactct 66
Query: 481 tcgacgatgatgtctctaaacagcagtatcactgcaacggatgtggaatatgtagaatcg 540
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 67 ttgacgatgatgtctctaaacagcagtatcactgcaacggatgtggaatatgcagaattg 126
Query: 541 gaggcagggagaattccttccactgttcaaaa-gtggatgttgctattcaattgcgctga 599
|||| |||||||||| |||||||||||||||| | |||||||||||||||||||| ||||
Sbjct: 127 gagggagggagaatttcttccactgttcaaaatgcggatgttgctattcaattgctctga 186
Query: 600 aga 602
|||
Sbjct: 187 aga 189
>gb|CD462309.1|CD462309 SA1_40_H09.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_40_H09_A002 5', mRNA sequence
Length = 762
Score = 254 bits (128), Expect = 8e-066
Identities = 155/164 (94%)
Strand = Plus / Plus
Query: 131 caagagctctctgttgtctgatggaaactacaatacagacaagatcaatggttcaaaccc 190
|||| ||||| || ||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 599 caagggctctttgctgtctgatggaaactacaatacagagaagatcaatggttcaaatcc 658
Query: 191 tgatgactatgagaaatttgagaaagggataatgcactatgggtgtccacattatagaag 250
|||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 659 tgatgagtatgagaaatttcagaaagggataatgcagtatgggtgtccacattatagaag 718
Query: 251 gagatgccgcataagagctccttgctgcaatgaaatttttgatt 294
|||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 719 gagatgccgcataagagctccttgctgcaatgaagtttttgatt 762
>gb|AW677678.1|AW677678 WS1_10_F06.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 595
Score = 176 bits (89), Expect = 2e-042
Identities = 114/121 (94%), Gaps = 1/121 (0%)
Strand = Plus / Plus
Query: 483 gacgatgatgtctctaaacagcagtatcactgcaacggatgtggaatatgtagaatcgga 542
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 13 gacgatgatgtctctaaacagcagtatcactgcaacggatgtggaatatgcagaattgga 72
Query: 543 ggcagggagaattccttccactgttcaaaa-gtggatgttgctattcaattgcgctgaag 601
|| |||||||||| |||||||||||||||| | |||||||||||||||||||| ||||||
Sbjct: 73 gggagggagaatttcttccactgttcaaaatgcggatgttgctattcaattgctctgaag 132
Query: 602 a 602
|
Sbjct: 133 a 133
>gb|CN129758.1|CN129758 RHOH1_37_F03.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_37_F03_A002 3', mRNA sequence
Length = 832
Score = 147 bits (74), Expect = 1e-033
Identities = 99/106 (93%), Gaps = 1/106 (0%)
Strand = Plus / Plus
Query: 498 aaacagcagtatcactgcaacggatgtggaatatgtagaatcggaggcagggagaattcc 557
||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| |
Sbjct: 1 aaacagcagtatcactgcaacggatgtggaatatgcagaattggagggagggagaatttc 60
Query: 558 ttccactgttcaaaa-gtggatgttgctattcaattgcgctgaaga 602
||||||||||||||| | |||||||||||||||||||| |||||||
Sbjct: 61 ttccactgttcaaaatgcggatgttgctattcaattgctctgaaga 106
>gb|CW368754.1|CW368754 fsbb001f042n19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f042n19, DNA
sequence
Length = 630
Score = 127 bits (64), Expect = 1e-027
Identities = 85/92 (92%)
Strand = Plus / Minus
Query: 131 caagagctctctgttgtctgatggaaactacaatacagacaagatcaatggttcaaaccc 190
|||| ||||| || ||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 190 caagggctctttgctgtctgatggaaactacaatacagagaagatcaatggttcaaatcc 131
Query: 191 tgatgactatgagaaatttgagaaagggataa 222
|||||| |||||||||||| ||||||||||||
Sbjct: 130 tgatgagtatgagaaatttcagaaagggataa 99
>gb|CD209780.1|CD209780 HS1_54_F10.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_54_F10_A012 5', mRNA sequence
Length = 670
Score = 95.6 bits (48), Expect = 4e-018
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 131 caagagctctctgttgtctgatggaaactacaatacagacaagatcaatggttcaaaccc 190
|||| ||||| || ||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 599 caagggctctttgctgtctgatggaaactacaatacagagaagatcaatggttcaaatcc 658
Query: 191 tgatgactatga 202
|||||| |||||
Sbjct: 659 tgatgagtatga 670
>gb|CL173031.1|CL173031 104_376_10890597_148_31794_117 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10890597, DNA
sequence
Length = 725
Score = 81.8 bits (41), Expect = 7e-014
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 492 gtctctaaacagcagtatcactgcaacggatgtggaatatg 532
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 gtctctaaacagcagtatcactgcaacggatgtggaatatg 109
Score = 54.0 bits (27), Expect = 2e-005
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 534 agaatcggaggcagggagaattccttccactgttcaaaa 572
||||| ||||| |||||||||| ||||||||||||||||
Sbjct: 195 agaattggagggagggagaatttcttccactgttcaaaa 233
>gb|CW305810.1|CW305810 104_791_11466505_148_36273_011 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11466505, DNA
sequence
Length = 722
Score = 77.8 bits (39), Expect = 1e-012
Identities = 60/66 (90%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 65 tgtaatttacatttgatctctctctgctctaccgctacagcagcaggcacaagacgcaga 124
||||||||||||||||||| ||| || |||| |||||| ||||||||||||||||||||
Sbjct: 198 tgtaatttacatttgatctttct--gccctacagctacaacagcaggcacaagacgcaga 255
Query: 125 ctgctt 130
||||||
Sbjct: 256 ctgctt 261
>gb|CW345959.1|CW345959 104_849_11488774_116_36216_091 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11488774, DNA
sequence
Length = 537
Score = 77.8 bits (39), Expect = 1e-012
Identities = 60/66 (90%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 65 tgtaatttacatttgatctctctctgctctaccgctacagcagcaggcacaagacgcaga 124
||||||||||||||||||| ||| || |||| |||||| ||||||||||||||||||||
Sbjct: 126 tgtaatttacatttgatctttct--gccctacagctacaacagcaggcacaagacgcaga 183
Query: 125 ctgctt 130
||||||
Sbjct: 184 ctgctt 189
>gb|CW479679.1|CW479679 fsbb001f238f05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f238f05, DNA
sequence
Length = 724
Score = 77.8 bits (39), Expect = 1e-012
Identities = 60/66 (90%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 65 tgtaatttacatttgatctctctctgctctaccgctacagcagcaggcacaagacgcaga 124
||||||||||||||||||| ||| || |||| |||||| ||||||||||||||||||||
Sbjct: 458 tgtaatttacatttgatctttct--gccctacagctacaacagcaggcacaagacgcaga 515
Query: 125 ctgctt 130
||||||
Sbjct: 516 ctgctt 521
>gb|BF176663.1|BF176663 EM1_1_E12.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 625
Score = 77.8 bits (39), Expect = 1e-012
Identities = 60/66 (90%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 65 tgtaatttacatttgatctctctctgctctaccgctacagcagcaggcacaagacgcaga 124
||||||||||||||||||| ||| || |||| |||||| ||||||||||||||||||||
Sbjct: 621 tgtaatttacatttgatctttct--gccctacagctacaacagcaggcacaagacgcaga 564
Query: 125 ctgctt 130
||||||
Sbjct: 563 ctgctt 558
>gb|CD205432.1|CD205432 HS1_14_E04.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_14_E04_A012 3', mRNA sequence
Length = 624
Score = 77.8 bits (39), Expect = 1e-012
Identities = 60/66 (90%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 65 tgtaatttacatttgatctctctctgctctaccgctacagcagcaggcacaagacgcaga 124
||||||||||||||||||| ||| || |||| |||||| ||||||||||||||||||||
Sbjct: 611 tgtaatttacatttgatctttct--gccctacagctacaacagcaggcacaagacgcaga 554
Query: 125 ctgctt 130
||||||
Sbjct: 553 ctgctt 548
>gb|CD219825.1|CD219825 CCC1_59_D11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_59_D11_A007 3', mRNA sequence
Length = 643
Score = 77.8 bits (39), Expect = 1e-012
Identities = 60/66 (90%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 65 tgtaatttacatttgatctctctctgctctaccgctacagcagcaggcacaagacgcaga 124
||||||||||||||||||| ||| || |||| |||||| ||||||||||||||||||||
Sbjct: 607 tgtaatttacatttgatctttct--gccctacagctacaacagcaggcacaagacgcaga 550
Query: 125 ctgctt 130
||||||
Sbjct: 549 ctgctt 544
>gb|CD228802.1|CD228802 CCC1_10_H08.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_10_H08_A007 3', mRNA sequence
Length = 667
Score = 77.8 bits (39), Expect = 1e-012
Identities = 60/66 (90%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 65 tgtaatttacatttgatctctctctgctctaccgctacagcagcaggcacaagacgcaga 124
||||||||||||||||||| ||| || |||| |||||| ||||||||||||||||||||
Sbjct: 637 tgtaatttacatttgatctttct--gccctacagctacaacagcaggcacaagacgcaga 580
Query: 125 ctgctt 130
||||||
Sbjct: 579 ctgctt 574
>gb|CD461878.1|CD461878 SA1_31_G11.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_31_G11_A002 3', mRNA sequence
Length = 650
Score = 77.8 bits (39), Expect = 1e-012
Identities = 60/66 (90%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 65 tgtaatttacatttgatctctctctgctctaccgctacagcagcaggcacaagacgcaga 124
||||||||||||||||||| ||| || |||| |||||| ||||||||||||||||||||
Sbjct: 620 tgtaatttacatttgatctttct--gccctacagctacaacagcaggcacaagacgcaga 563
Query: 125 ctgctt 130
||||||
Sbjct: 562 ctgctt 557
>gb|CF070892.1|CF070892 FE1_14_B04.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_14_B04_A002 3', mRNA sequence
Length = 513
Score = 77.8 bits (39), Expect = 1e-012
Identities = 60/66 (90%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 65 tgtaatttacatttgatctctctctgctctaccgctacagcagcaggcacaagacgcaga 124
||||||||||||||||||| ||| || |||| |||||| ||||||||||||||||||||
Sbjct: 484 tgtaatttacatttgatctttct--gccctacagctacaacagcaggcacaagacgcaga 427
Query: 125 ctgctt 130
||||||
Sbjct: 426 ctgctt 421
>gb|CF770416.1|CF770416 DSBF1_7_D06.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_7_D06_A010 3', mRNA sequence
Length = 464
Score = 77.8 bits (39), Expect = 1e-012
Identities = 60/66 (90%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 65 tgtaatttacatttgatctctctctgctctaccgctacagcagcaggcacaagacgcaga 124
||||||||||||||||||| ||| || |||| |||||| ||||||||||||||||||||
Sbjct: 428 tgtaatttacatttgatctttct--gccctacagctacaacagcaggcacaagacgcaga 371
Query: 125 ctgctt 130
||||||
Sbjct: 370 ctgctt 365
>gb|BE599289.1|BE599289 PI1_87_F09.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 486
Score = 69.9 bits (35), Expect = 3e-010
Identities = 59/66 (89%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 65 tgtaatttacatttgatctctctctgctctaccgctacagcagcaggcacaagacgcaga 124
||||||||||||||||||| ||| || |||| |||||| |||||||||||||||||| |
Sbjct: 485 tgtaatttacatttgatctttct--gccctacagctacaacagcaggcacaagacgcaaa 428
Query: 125 ctgctt 130
||||||
Sbjct: 427 ctgctt 422
>gb|CN138173.1|CN138173 OX1_62_E02.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_62_E02_A002 3', mRNA sequence
Length = 877
Score = 69.9 bits (35), Expect = 3e-010
Identities = 56/62 (90%), Gaps = 2/62 (3%)
Strand = Plus / Minus
Query: 69 atttacatttgatctctctctgctctaccgctacagcagcaggcacaagacgcagactgc 128
||||||||||||||| ||| || |||| |||||| ||||||||||||||||||||||||
Sbjct: 830 atttacatttgatctttct--gccctacagctacaacagcaggcacaagacgcagactgc 773
Query: 129 tt 130
||
Sbjct: 772 tt 771
>gb|CN133757.1|CN133757 OX1_18_D09.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_18_D09_A002 3', mRNA sequence
Length = 362
Score = 54.0 bits (27), Expect = 2e-005
Identities = 57/66 (86%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 65 tgtaatttacatttgatctctctctgctctaccgctacagcagcaggcacaagacgcaga 124
|||||||||||||||| || ||||| |||| |||||| ||||||| |||||||||| |
Sbjct: 326 tgtaatttacatttga--cctttctgccctacagctacaacagcagggacaagacgcaaa 269
Query: 125 ctgctt 130
||||||
Sbjct: 268 ctgctt 263
>gb|CW345960.1|CW345960 104_849_11488774_148_36215_091 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11488774, DNA
sequence
Length = 730
Score = 52.0 bits (26), Expect = 6e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 105 cagcaggcacaagacgcagactgctt 130
||||||||||||||||||||||||||
Sbjct: 728 cagcaggcacaagacgcagactgctt 703
>gb|CF770333.1|CF770333 DSBF1_7_D06.b1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_7_D06_A010 5', mRNA sequence
Length = 534
Score = 52.0 bits (26), Expect = 6e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 105 cagcaggcacaagacgcagactgctt 130
||||||||||||||||||||||||||
Sbjct: 530 cagcaggcacaagacgcagactgctt 505
>gb|CN130862.1|CN130862 RHOH1_44_G05.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_44_G05_A002 3', mRNA sequence
Length = 764
Score = 52.0 bits (26), Expect = 6e-005
Identities = 39/42 (92%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 562 actgttcaaaa-gtggatgttgctattcaattgcgctgaaga 602
||||||||||| | |||||||||||||||||||| |||||||
Sbjct: 1 actgttcaaaatgcggatgttgctattcaattgctctgaaga 42
>gb|AW678519.1|AW678519 WS1_16_A09.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 565
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 444 tgcatggggaagtacttctgtggtttgtgcaaactcttcgacgatgatgtctc 496
||||||||||| |||||||||| | |||||| |||| ||||||||||||||
Sbjct: 438 tgcatggggaaatacttctgtgaaatatgcaaattctttgacgatgatgtctc 490
>gb|AW745330.1|AW745330 WS1_33_F10.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 580
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 444 tgcatggggaagtacttctgtggtttgtgcaaactcttcgacgatgatgtctc 496
||||||||||| |||||||||| | |||||| |||| ||||||||||||||
Sbjct: 65 tgcatggggaaatacttctgtgaaatatgcaaattctttgacgatgatgtctc 117
>gb|AW922066.1|AW922066 LG1_224_B09.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 195
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 444 tgcatggggaagtacttctgtggtttgtgcaaactcttcgacgatgatgtctc 496
||||||||||| |||||||||| | |||||| |||| ||||||||||||||
Sbjct: 19 tgcatggggaaatacttctgtgaaatatgcaaattctttgacgatgatgtctc 71
>gb|BE367552.1|BE367552 PI1_9_C11.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 471
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 444 tgcatggggaagtacttctgtggtttgtgcaaactcttcgacgatgatgtctc 496
||||||||||| |||||||||| | |||||| |||| ||||||||||||||
Sbjct: 90 tgcatggggaaatacttctgtgaaatatgcaaattctttgacgatgatgtctc 142
>gb|BE592089.1|BE592089 LG1_224_B09.b2_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 476
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 444 tgcatggggaagtacttctgtggtttgtgcaaactcttcgacgatgatgtctc 496
||||||||||| |||||||||| | |||||| |||| ||||||||||||||
Sbjct: 23 tgcatggggaaatacttctgtgaaatatgcaaattctttgacgatgatgtctc 75
>gb|BE592989.1|BE592989 WS1_93_A01.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 535
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 444 tgcatggggaagtacttctgtggtttgtgcaaactcttcgacgatgatgtctc 496
||||||||||| |||||||||| | |||||| |||| ||||||||||||||
Sbjct: 119 tgcatggggaaatacttctgtgaaatatgcaaattctttgacgatgatgtctc 171
>gb|BE593477.1|BE593477 WS1_98_C11.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 581
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 444 tgcatggggaagtacttctgtggtttgtgcaaactcttcgacgatgatgtctc 496
||||||||||| |||||||||| | |||||| |||| ||||||||||||||
Sbjct: 65 tgcatggggaaatacttctgtgaaatatgcaaattctttgacgatgatgtctc 117
>gb|BE594074.1|BE594074 WS1_101_H05.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 566
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 444 tgcatggggaagtacttctgtggtttgtgcaaactcttcgacgatgatgtctc 496
||||||||||| |||||||||| | |||||| |||| ||||||||||||||
Sbjct: 279 tgcatggggaaatacttctgtgaaatatgcaaattctttgacgatgatgtctc 331
>gb|BE597470.1|BE597470 PI1_69_H07.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 485
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 444 tgcatggggaagtacttctgtggtttgtgcaaactcttcgacgatgatgtctc 496
||||||||||| |||||||||| | |||||| |||| ||||||||||||||
Sbjct: 32 tgcatggggaaatacttctgtgaaatatgcaaattctttgacgatgatgtctc 84
>gb|BG462809.1|BG462809 EM1_45_H01.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 383
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 444 tgcatggggaagtacttctgtggtttgtgcaaactcttcgacgatgatgtctc 496
||||||||||| |||||||||| | |||||| |||| ||||||||||||||
Sbjct: 241 tgcatggggaaatacttctgtgaaatatgcaaattctttgacgatgatgtctc 293
>gb|BG556794.1|BG556794 EM1_38_F11.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 562
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 444 tgcatggggaagtacttctgtggtttgtgcaaactcttcgacgatgatgtctc 496
||||||||||| |||||||||| | |||||| |||| ||||||||||||||
Sbjct: 241 tgcatggggaaatacttctgtgaaatatgcaaattctttgacgatgatgtctc 293
>gb|BM324999.1|BM324999 PIC1_38_E05.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 567
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 444 tgcatggggaagtacttctgtggtttgtgcaaactcttcgacgatgatgtctc 496
||||||||||| |||||||||| | |||||| |||| ||||||||||||||
Sbjct: 335 tgcatggggaaatacttctgtgaaatatgcaaattctttgacgatgatgtctc 387
>gb|CD211330.1|CD211330 HS1_59_D10.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_59_D10_A012 5', mRNA sequence
Length = 663
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 444 tgcatggggaagtacttctgtggtttgtgcaaactcttcgacgatgatgtctc 496
||||||||||| |||||||||| | |||||| |||| ||||||||||||||
Sbjct: 436 tgcatggggaaatacttctgtgaaatatgcaaattctttgacgatgatgtctc 488
>gb|CD212646.1|CD212646 HS1_6_D03.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_6_D03_A012 5', mRNA sequence
Length = 622
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 444 tgcatggggaagtacttctgtggtttgtgcaaactcttcgacgatgatgtctc 496
||||||||||| |||||||||| | |||||| |||| ||||||||||||||
Sbjct: 546 tgcatggggaaatacttctgtgaaatatgcaaattctttgacgatgatgtctc 598
>gb|CD222882.1|CD222882 CCC1_24_G10.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_24_G10_A007 5', mRNA sequence
Length = 659
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 444 tgcatggggaagtacttctgtggtttgtgcaaactcttcgacgatgatgtctc 496
||||||||||| |||||||||| | |||||| |||| ||||||||||||||
Sbjct: 439 tgcatggggaaatacttctgtgaaatatgcaaattctttgacgatgatgtctc 491
>gb|CD223169.1|CD223169 CCC1_26_H01.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_26_H01_A007 5', mRNA sequence
Length = 628
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 444 tgcatggggaagtacttctgtggtttgtgcaaactcttcgacgatgatgtctc 496
||||||||||| |||||||||| | |||||| |||| ||||||||||||||
Sbjct: 447 tgcatggggaaatacttctgtgaaatatgcaaattctttgacgatgatgtctc 499
>gb|CD229448.1|CD229448 CCC1_15_C04.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_15_C04_A007 5', mRNA sequence
Length = 623
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 444 tgcatggggaagtacttctgtggtttgtgcaaactcttcgacgatgatgtctc 496
||||||||||| |||||||||| | |||||| |||| ||||||||||||||
Sbjct: 296 tgcatggggaaatacttctgtgaaatatgcaaattctttgacgatgatgtctc 348
>gb|CN134496.1|CN134496 OX1_26_E07.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_26_E07_A002 5', mRNA sequence
Length = 746
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 444 tgcatggggaagtacttctgtggtttgtgcaaactcttcgacgatgatgtctc 496
||||||||||| |||||||||| | |||||| |||| ||||||||||||||
Sbjct: 421 tgcatggggaaatacttctgtgaaatatgcaaattctttgacgatgatgtctc 473
>gb|CN148626.1|CN148626 WOUND1_57_F11.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_57_F11_A002 5', mRNA sequence
Length = 895
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 444 tgcatggggaagtacttctgtggtttgtgcaaactcttcgacgatgatgtctc 496
||||||||||| |||||||||| | |||||| |||| ||||||||||||||
Sbjct: 432 tgcatggggaaatacttctgtgaaatatgcaaattctttgacgatgatgtctc 484
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 150,603
Number of Sequences: 832831
Number of extensions: 150603
Number of successful extensions: 39829
Number of sequences better than 0.5: 58
Number of HSP's better than 0.5 without gapping: 57
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 39741
Number of HSP's gapped (non-prelim): 69
length of query: 602
length of database: 491,359,669
effective HSP length: 19
effective length of query: 583
effective length of database: 475,535,880
effective search space: 277237418040
effective search space used: 277237418040
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)