BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3198766.2.1
(1273 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW401009.1|CW401009 fsbb001f091j18f0 Sorghum methylation... 712 0.0
gb|CW022866.1|CW022866 104_162_10432101_5_30000 Sorghum met... 490 e-136
gb|BZ350471.1|BZ350471 ht56g09.g1 WGS-SbicolorF (JM107 adap... 410 e-112
gb|CF484182.1|CF484182 POL1_3_D12.g1_A002 Pollen Sorghum bi... 392 e-107
gb|CW461444.1|CW461444 fsbb001f209b20f0 Sorghum methylation... 176 3e-042
gb|CW116893.1|CW116893 104_492_11107365_148_34602_083 Sorgh... 174 1e-041
gb|CW333050.1|CW333050 104_830_11481737_116_36040_065 Sorgh... 159 8e-037
gb|CF484105.1|CF484105 POL1_3_D12.b1_A002 Pollen Sorghum bi... 143 5e-032
gb|BF656908.1|BF656908 OV2_22_E07.g1_A002 Ovary 2 (OV2) Sor... 141 2e-031
gb|BE918829.1|BE918829 FM1_2_E02.g1_A003 Floral-Induced Mer... 129 7e-028
gb|BG049286.1|BG049286 OV1_18_A06.g1_A002 Ovary 1 (OV1) Sor... 127 3e-027
gb|BG240110.1|BG240110 OV1_18_A06.b1_A002 Ovary 1 (OV1) Sor... 127 3e-027
gb|CW160113.1|CW160113 104_566_11149711_116_36428_024 Sorgh... 119 7e-025
gb|CW160114.1|CW160114 104_566_11149711_148_36427_024 Sorgh... 119 7e-025
gb|CW230316.1|CW230316 104_679_11210473_148_37335_015 Sorgh... 119 7e-025
gb|CW048652.1|CW048652 104_287_10513538_114_30211 Sorghum m... 103 4e-020
gb|CW408330.1|CW408330 fsbb001f102c22f0 Sorghum methylation... 103 4e-020
gb|CW266971.1|CW266971 104_737_11400437_148_35293_031 Sorgh... 92 1e-016
gb|BE918972.1|BE918972 FM1_2_E02.b1_A003 Floral-Induced Mer... 86 9e-015
gb|CF484998.1|CF484998 POL1_28_G06.g1_A002 Pollen Sorghum b... 62 1e-007
gb|CW328835.1|CW328835 104_825_11479519_116_35999_030 Sorgh... 58 2e-006
gb|CW328836.1|CW328836 104_825_11479519_148_36000_030 Sorgh... 58 2e-006
gb|BG560336.1|BG560336 RHIZ2_73_B09.b1_A003 Rhizome2 (RHIZ2... 58 2e-006
gb|CL189041.1|CL189041 104_406_10902014_114_32468_063 Sorgh... 54 3e-005
gb|CW198850.1|CW198850 104_623_11183195_116_36840_036 Sorgh... 54 3e-005
gb|CF484914.1|CF484914 POL1_28_G06.b1_A002 Pollen Sorghum b... 54 3e-005
gb|CW333051.1|CW333051 104_830_11481737_148_36039_065 Sorgh... 52 1e-004
gb|CW100366.1|CW100366 104_467_11004060_116_34389_036 Sorgh... 50 5e-004
gb|CW253678.1|CW253678 104_717_11225229_148_35108_089 Sorgh... 50 5e-004
gb|AC169370.3| Sorghum bicolor clone SB_BBc0011I20, WORKING... 50 5e-004
gb|CW214306.1|CW214306 104_646_11193944_148_37053_028 Sorgh... 48 0.002
gb|CW368387.1|CW368387 fsbb001f042f08k0 Sorghum methylation... 48 0.002
gb|CW059843.1|CW059843 104_303_10519542_1_30042 Sorghum met... 44 0.031
gb|CW380541.1|CW380541 fsbb001f061g11k0 Sorghum methylation... 44 0.031
gb|BF655654.1|BF655654 FM1_47_B10.b1_A003 Floral-Induced Me... 44 0.031
gb|CD428553.1|CD428553 ETH1_27_D03.g1_A002 Ethylene-treated... 42 0.12
gb|CF488924.1|CF488924 POL1_53_C05.b1_A002 Pollen Sorghum b... 42 0.12
gb|CN129274.1|CN129274 RHOH1_34_B04.g1_A002 Acid- and alkal... 42 0.12
gb|CW060595.1|CW060595 104_304_10519937_115_30144 Sorghum m... 40 0.49
gb|CW397027.1|CW397027 fsbb001f085l20k0 Sorghum methylation... 40 0.49
>gb|CW401009.1|CW401009 fsbb001f091j18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f091j18, DNA
sequence
Length = 684
Score = 712 bits (359), Expect = 0.0
Identities = 463/497 (93%), Gaps = 3/497 (0%)
Strand = Plus / Minus
Query: 597 ccaactgccacctcaccaaccacaacgacgtcatgctcttcagctccagcgacaagcatc 656
||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 684 ccaactgccacatgaccaaccacaacgacgtcatgcttttcagctccagcgacaagcacc 625
Query: 657 ccgaggaccagatcatgcagatcaccgtcgccttcaaccacttcggcagaggcctcgtgc 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ccgaggaccagatcatgcagatcaccgtcgccttcaaccacttcggcagaggcctcgtgc 565
Query: 717 agaggatgccaaggtgccgctggggcttcttccacgtggtcaacaacgactacacgcact 776
|||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 564 agaggatgccgaggtgccgctgggggttcttccacgtcgtcaacaacgactacacgcact 505
Query: 777 ggctcatgtacgccatcggcggcagcaaggcccccaccatcatcagccagggcaaccgct 836
||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||
Sbjct: 504 ggctcatgtacgccatcggcggcagcaaggcgccgaccatcatcagccaggggaaccgct 445
Query: 837 acatcgcgccgcccaaccttgccgcgaagcaggtcaccaagcagcatgacacgccggagt 896
||||||||||||||||||| || ||||||| |||||| ||||| |||||| |||||||||
Sbjct: 444 acatcgcgccgcccaacctggcggcgaagctggtcacaaagcaccatgacgcgccggagt 385
Query: 897 ccgtgtggaagaactgggtgtggcactccgagaacgacctcttcatggagggcgcctact 956
| | |||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||
Sbjct: 384 cggagtggaagaactgggtgtggcactcggagaacgacctcttcatggagggagccaact 325
Query: 957 tcaccgtcaccggcggcc---agatcaacagacagttcaacaagaaggacctcatcaagc 1013
||||||||| |||||||| |||||||||| | ||| |||||||||||||||||||||
Sbjct: 324 tcaccgtcagcggcggccagaagatcaacaggaatttccacaagaaggacctcatcaagc 265
Query: 1014 ccaggaacgggtcctacgtcaccaggctcacgcgctacgccggctccctcgcctgcacgc 1073
||| |||||||||||||||||||||||||||||| ||||||||| | |||||||||| ||
Sbjct: 264 ccaagaacgggtcctacgtcaccaggctcacgcgatacgccggcgcgctcgcctgcaggc 205
Query: 1074 ccggcaagccctgctag 1090
|||||||||||||||||
Sbjct: 204 ccggcaagccctgctag 188
>gb|CW022866.1|CW022866 104_162_10432101_5_30000 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10432101, DNA
sequence
Length = 617
Score = 490 bits (247), Expect = e-136
Identities = 304/323 (94%)
Strand = Plus / Minus
Query: 28 ggcgacgaacccgatcgaccggtgctggcggtgccggcaggactgggcgacggaccggaa 87
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggcgacgaacccgatcgaccgttgctggcggtgccggcaggactgggcgacggaccggaa 264
Query: 88 gcgcctggcgcggtgcgccaaggggttcgggcgcaacaccaccggcgggctggccggcaa 147
||| ||||| ||||||||| |||| ||||| ||||||||||||||||| |||||||||||
Sbjct: 263 gcggctggctcggtgcgcccagggcttcggtcgcaacaccaccggcggtctggccggcaa 204
Query: 148 gttctacgtggtgacggacggcaccgacgacgacgtggtgaacccgcgccccggcacgct 207
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 203 gttctacgtggtgacggacggcaccgacgacgacgtggtgaaccctcgccccggcacgct 144
Query: 208 ccggtggggcgtcatccagatcgagccgctgtggatcaccttcgccaagaccatgatcat 267
|||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 143 ccggtgggccgtcatccagatcgagccgctgtggatcaccttcgccaggacgatgatcat 84
Query: 268 cacgcttaaggaggagctcatcatccgcggcgacaagaccattgacggccgcggcgtgca 327
|||||| ||||||||||||||||||| |||||||||||||| |||||||| |||| |||
Sbjct: 83 cacgctcaaggaggagctcatcatccagggcgacaagaccatcgacggccggggcgcgca 24
Query: 328 ggtgcgcatcaccaacggcgcgc 350
|||||| ||| ||||||||||||
Sbjct: 23 ggtgcggatcgccaacggcgcgc 1
>gb|BZ350471.1|BZ350471 ht56g09.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ht56g09 5', DNA sequence
Length = 596
Score = 410 bits (207), Expect = e-112
Identities = 297/325 (91%), Gaps = 4/325 (1%)
Strand = Plus / Minus
Query: 770 acgcactggctcatgtacgccatcggcggcagcaaggcccccaccatcatcagccagggc 829
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 596 acgcactggctcatgtacgccatcggcggcagcaaggcgccgaccatcatcagccagggg 537
Query: 830 aaccgctacatcgcgccgcccaaccttgccgcgaagcaggtcaccaagcagcatgacacg 889
|||||||||||||||||||||||||| || ||||||| |||||| ||||| |||||| ||
Sbjct: 536 aaccgctacatcgcgccgcccaacctggcggcgaagctggtcacaaagcaccatgacgcg 477
Query: 890 ccggagtccgtgtggaagaactgggtgtggcactccgagaacgacctcttcatggagggc 949
|||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 476 ccggagtcggagtggaagaactgggtgtggcactcggagaacgacctcttcatggaggga 417
Query: 950 gcctacttcaccgtcaccggcggcc---agatcaacagacagttcaacaagaaggacctc 1006
||| |||||||||||| |||||||| |||||||||| | ||| ||||||||||||||
Sbjct: 416 gccaacttcaccgtcagcggcggccagaagatcaacaggaatttccacaagaaggacctc 357
Query: 1007 atcaagcccaggaacgggtcctacgtcaccaggctcacgcgctacgccggctccctcg-c 1065
|||||||||| |||||||||||||||||||||||||||||| ||||||||| | |||| |
Sbjct: 356 atcaagcccaagaacgggtcctacgtcaccaggctcacgcgatacgccggcgcgctcgcc 297
Query: 1066 ctgcacgcccggcaagccctgctag 1090
||||| |||||||||||||||||||
Sbjct: 296 ctgcaggcccggcaagccctgctag 272
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 1172 gttgaaagtgcgacacaccagagaacgtgtctgtgt 1207
|||||||| |||||| ||||||||||| ||||||||
Sbjct: 63 gttgaaagcgcgacagaccagagaacgcgtctgtgt 28
Score = 44.1 bits (22), Expect = 0.031
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1149 ctcgccatgtaagaaacagggg 1170
||||||||||||||||||||||
Sbjct: 103 ctcgccatgtaagaaacagggg 82
>gb|CF484182.1|CF484182 POL1_3_D12.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_3_D12_A002 5', mRNA sequence
Length = 557
Score = 392 bits (198), Expect = e-107
Identities = 231/242 (95%)
Strand = Plus / Plus
Query: 28 ggcgacgaacccgatcgaccggtgctggcggtgccggcaggactgggcgacggaccggaa 87
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ggcgacgaacccgatcgaccgttgctggcggtgccggcaggactgggcgacggaccggaa 375
Query: 88 gcgcctggcgcggtgcgccaaggggttcgggcgcaacaccaccggcgggctggccggcaa 147
||| ||||| ||||||||| |||| ||||| ||||||||||||||||| |||||||||||
Sbjct: 376 gcggctggctcggtgcgcccagggcttcggtcgcaacaccaccggcggtctggccggcaa 435
Query: 148 gttctacgtggtgacggacggcaccgacgacgacgtggtgaacccgcgccccggcacgct 207
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 436 gttctacgtggtgacggacggcaccgacgacgacgtggtgaaccctcgccccggcacgct 495
Query: 208 ccggtggggcgtcatccagatcgagccgctgtggatcaccttcgccaagaccatgatcat 267
|||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 496 ccggtgggccgtcatccagatcgagccgctgtggatcaccttcgccaggacgatgatcat 555
Query: 268 ca 269
||
Sbjct: 556 ca 557
>gb|CW461444.1|CW461444 fsbb001f209b20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f209b20, DNA
sequence
Length = 495
Score = 176 bits (89), Expect = 3e-042
Identities = 152/173 (87%)
Strand = Plus / Minus
Query: 671 atgcagatcaccgtcgccttcaaccacttcggcagaggcctcgtgcagaggatgccaagg 730
||||||||||| || || |||||||||||||||||||| || |||||| ||||||| ||
Sbjct: 309 atgcagatcacggtggcgttcaaccacttcggcagagggctggtgcagcggatgccgcgg 250
Query: 731 tgccgctggggcttcttccacgtggtcaacaacgactacacgcactggctcatgtacgcc 790
||||| | || |||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 249 tgccggtccgggttcttccacgtggtgaacaacgactacacgcactggatcatgtacgcc 190
Query: 791 atcggcggcagcaaggcccccaccatcatcagccagggcaaccgctacatcgc 843
|||||||| | |||| ||||||||||||||||||||| ||||| | ||||||
Sbjct: 189 atcggcgggaacaagaaccccaccatcatcagccaggggaaccggttcatcgc 137
>gb|CW116893.1|CW116893 104_492_11107365_148_34602_083 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11107365, DNA
sequence
Length = 136
Score = 174 bits (88), Expect = 1e-041
Identities = 124/136 (91%)
Strand = Plus / Minus
Query: 397 catcaacgacatcgtctcctccaacaaggacggcggctacgtccgcgactcgccggacca 456
|||||| |||||| | |||||||||||| |||||||| || |||| ||||||||||||||
Sbjct: 136 catcaaggacatcatgtcctccaacaagaacggcggcaacatccgggactcgccggacca 77
Query: 457 cttcggctggcgcaccgtctccgacggcgacggcatcaccgtcttcggctccaccaacgt 516
|||||||||||||||||||||||| || |||||||||||| |||| ||||||||||| ||
Sbjct: 76 cttcggctggcgcaccgtctccgagggggacggcatcaccctcttaggctccaccaaggt 17
Query: 517 gtggctggaccacctc 532
||||||||||||||||
Sbjct: 16 gtggctggaccacctc 1
>gb|CW333050.1|CW333050 104_830_11481737_116_36040_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481737, DNA
sequence
Length = 653
Score = 159 bits (80), Expect = 8e-037
Identities = 143/164 (87%)
Strand = Plus / Minus
Query: 671 atgcagatcaccgtcgccttcaaccacttcggcagaggcctcgtgcagaggatgccaagg 730
|||||| ||||||| || |||||||||||||| | || || |||||| ||||||| |
Sbjct: 534 atgcaggtcaccgtggcgttcaaccacttcggaaaggggctggtgcagcggatgccgcgc 475
Query: 731 tgccgctggggcttcttccacgtggtcaacaacgactacacgcactggctcatgtacgcc 790
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 474 tgccgccatggcttcttccacgtggtgaacaacgactacacgcactggctcatgtacgcc 415
Query: 791 atcggcggcagcaaggcccccaccatcatcagccagggcaaccg 834
|||||||||||| || ||| ||||||||||||||||| |||||
Sbjct: 414 atcggcggcagccagaaccctaccatcatcagccaggggaaccg 371
>gb|CF484105.1|CF484105 POL1_3_D12.b1_A002 Pollen Sorghum bicolor cDNA clone POL1_3_D12_A002
3', mRNA sequence
Length = 479
Score = 143 bits (72), Expect = 5e-032
Identities = 102/112 (91%)
Strand = Plus / Plus
Query: 975 agatcaacagacagttcaacaagaaggacctcatcaagcccaggaacgggtcctacgtca 1034
|||||||||| | ||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 10 agatcaacaggaatttccacaagaaggacctcatcaagcccaagaacgggtcctacgtca 69
Query: 1035 ccaggctcacgcgctacgccggctccctcgcctgcacgcccggcaagccctg 1086
||||||||||||| ||||||||| | ||||||||| |||||||||||||||
Sbjct: 70 ccaggctcacgcgatacgccggcgcgttcgcctgcaggcccggcaagccctg 121
Score = 50.1 bits (25), Expect = 5e-004
Identities = 58/68 (85%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 1172 gttgaaagtgcgacacaccagagaacgtgtctgt--gtatactgtgtaaaggtcctaaag 1229
|||||||| |||||| ||||||||||| |||||| || |||||||| |||||||| ||
Sbjct: 334 gttgaaagcgcgacagaccagagaacgcgtctgtgcgtgtactgtgttgaggtcctagag 393
Query: 1230 gaaagaga 1237
|| |||||
Sbjct: 394 gagagaga 401
Score = 44.1 bits (22), Expect = 0.031
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1149 ctcgccatgtaagaaacagggg 1170
||||||||||||||||||||||
Sbjct: 294 ctcgccatgtaagaaacagggg 315
>gb|BF656908.1|BF656908 OV2_22_E07.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 539
Score = 141 bits (71), Expect = 2e-031
Identities = 125/143 (87%)
Strand = Plus / Plus
Query: 692 aaccacttcggcagaggcctcgtgcagaggatgccaaggtgccgctggggcttcttccac 751
||||||||||| | || || |||||| ||||||| | |||||| ||||||||||||
Sbjct: 1 aaccacttcggaaaggggctggtgcagcggatgccgcgctgccgccatggcttcttccac 60
Query: 752 gtggtcaacaacgactacacgcactggctcatgtacgccatcggcggcagcaaggccccc 811
||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 61 gtggtgaacaacgactacacgcactggctcatgtacgccatcggcggcagccagaaccct 120
Query: 812 accatcatcagccagggcaaccg 834
||||||||||||||||| |||||
Sbjct: 121 accatcatcagccaggggaaccg 143
>gb|BE918829.1|BE918829 FM1_2_E02.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 539
Score = 129 bits (65), Expect = 7e-028
Identities = 92/101 (91%)
Strand = Plus / Plus
Query: 743 ttcttccacgtggtcaacaacgactacacgcactggctcatgtacgccatcggcggcagc 802
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| | |
Sbjct: 11 ttcttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcggcgggaac 70
Query: 803 aaggcccccaccatcatcagccagggcaaccgctacatcgc 843
||| ||||||||||||||||||||| ||||| | ||||||
Sbjct: 71 aagaaccccaccatcatcagccaggggaaccggttcatcgc 111
>gb|BG049286.1|BG049286 OV1_18_A06.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 440
Score = 127 bits (64), Expect = 3e-027
Identities = 79/84 (94%)
Strand = Plus / Plus
Query: 1007 atcaagcccaggaacgggtcctacgtcaccaggctcacgcgctacgccggctccctcgcc 1066
|||||||||| |||||||||||||||||||||||||||||| ||||||||| | ||||||
Sbjct: 9 atcaagcccaagaacgggtcctacgtcaccaggctcacgcgatacgccggcgcgctcgcc 68
Query: 1067 tgcacgcccggcaagccctgctag 1090
|||| |||||||||||||||||||
Sbjct: 69 tgcaggcccggcaagccctgctag 92
Score = 50.1 bits (25), Expect = 5e-004
Identities = 58/68 (85%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 1172 gttgaaagtgcgacacaccagagaacgtgtc--tgtgtatactgtgtaaaggtcctaaag 1229
|||||||| |||||| ||||||||||| ||| ||||| |||||||| |||||||| ||
Sbjct: 301 gttgaaagcgcgacagaccagagaacgcgtctgtgtgtgtactgtgttgaggtcctagag 360
Query: 1230 gaaagaga 1237
|| |||||
Sbjct: 361 gagagaga 368
Score = 44.1 bits (22), Expect = 0.031
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1149 ctcgccatgtaagaaacagggg 1170
||||||||||||||||||||||
Sbjct: 261 ctcgccatgtaagaaacagggg 282
>gb|BG240110.1|BG240110 OV1_18_A06.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 483
Score = 127 bits (64), Expect = 3e-027
Identities = 79/84 (94%)
Strand = Plus / Plus
Query: 1007 atcaagcccaggaacgggtcctacgtcaccaggctcacgcgctacgccggctccctcgcc 1066
|||||||||| |||||||||||||||||||||||||||||| ||||||||| | ||||||
Sbjct: 9 atcaagcccaagaacgggtcctacgtcaccaggctcacgcgatacgccggcgcgctcgcc 68
Query: 1067 tgcacgcccggcaagccctgctag 1090
|||| |||||||||||||||||||
Sbjct: 69 tgcaggcccggcaagccctgctag 92
Score = 50.1 bits (25), Expect = 5e-004
Identities = 58/68 (85%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 1172 gttgaaagtgcgacacaccagagaacgtgtc--tgtgtatactgtgtaaaggtcctaaag 1229
|||||||| |||||| ||||||||||| ||| ||||| |||||||| |||||||| ||
Sbjct: 301 gttgaaagcgcgacagaccagagaacgcgtctgtgtgtgtactgtgttgaggtcctagag 360
Query: 1230 gaaagaga 1237
|| |||||
Sbjct: 361 gagagaga 368
Score = 44.1 bits (22), Expect = 0.031
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1149 ctcgccatgtaagaaacagggg 1170
||||||||||||||||||||||
Sbjct: 261 ctcgccatgtaagaaacagggg 282
>gb|CW160113.1|CW160113 104_566_11149711_116_36428_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149711, DNA
sequence
Length = 709
Score = 119 bits (60), Expect = 7e-025
Identities = 255/320 (79%)
Strand = Plus / Plus
Query: 29 gcgacgaacccgatcgaccggtgctggcggtgccggcaggactgggcgacggaccggaag 88
|||||||||||||||||| ||||||||| ||| | | |||||||||||||||||
Sbjct: 133 gcgacgaacccgatcgacaagtgctggcgctgcaagaacgactgggcgacggaccgtttc 192
Query: 89 cgcctggcgcggtgcgccaaggggttcgggcgcaacaccaccggcgggctggccggcaag 148
|| ||||| |||||||||| ||| ||||||| ||||||||||| || | ||| |
Sbjct: 193 cgtctggcccggtgcgccaggggtttcgggcaggcgaccaccggcggcctcggcggtccg 252
Query: 149 ttctacgtggtgacggacggcaccgacgacgacgtggtgaacccgcgccccggcacgctc 208
||||| | |||||||| || ||||| ||||||||||||||| || || || ||||||
Sbjct: 253 atctacatcgtgacggatcccagcgacggcgacgtggtgaaccctcggccggggacgctc 312
Query: 209 cggtggggcgtcatccagatcgagccgctgtggatcaccttcgccaagaccatgatcatc 268
||||||||||| |||||| | ||||||||||||| |||||||||| | |||||||||
Sbjct: 313 cggtggggcgtgatccagccaggcccgctgtggatcatcttcgccaagtcgatgatcatc 372
Query: 269 acgcttaaggaggagctcatcatccgcggcgacaagaccattgacggccgcggcgtgcag 328
||| | ||||||| | | || ||||||||||||| ||||| ||||||| ||||
Sbjct: 373 cagctctcgcaggagctgctggtgagcagcgacaagaccatcgacgggcgcggcgcgcag 432
Query: 329 gtgcgcatcaccaacggcgc 348
|||| |||| ||||||||||
Sbjct: 433 gtgcacatcgccaacggcgc 452
Score = 65.9 bits (33), Expect = 9e-009
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 507 ccaccaacgtgtggctggaccacctctccctctccaactgccaggacggcctcatcgacg 566
|||||||||||||| | |||||| ||||| | ||||||||| ||||||| ||||||||||
Sbjct: 605 ccaccaacgtgtggatcgaccacatctccatgtccaactgcgaggacgggctcatcgacg 664
Query: 567 t 567
|
Sbjct: 665 t 665
>gb|CW160114.1|CW160114 104_566_11149711_148_36427_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149711, DNA
sequence
Length = 706
Score = 119 bits (60), Expect = 7e-025
Identities = 255/320 (79%)
Strand = Plus / Minus
Query: 29 gcgacgaacccgatcgaccggtgctggcggtgccggcaggactgggcgacggaccggaag 88
|||||||||||||||||| ||||||||| ||| | | |||||||||||||||||
Sbjct: 638 gcgacgaacccgatcgacaagtgctggcgctgcaagaacgactgggcgacggaccgtttc 579
Query: 89 cgcctggcgcggtgcgccaaggggttcgggcgcaacaccaccggcgggctggccggcaag 148
|| ||||| |||||||||| ||| ||||||| ||||||||||| || | ||| |
Sbjct: 578 cgtctggcccggtgcgccaggggtttcgggcaggcgaccaccggcggcctcggcggtccg 519
Query: 149 ttctacgtggtgacggacggcaccgacgacgacgtggtgaacccgcgccccggcacgctc 208
||||| | |||||||| || ||||| ||||||||||||||| || || || ||||||
Sbjct: 518 atctacatcgtgacggatcccagcgacggcgacgtggtgaaccctcggccggggacgctc 459
Query: 209 cggtggggcgtcatccagatcgagccgctgtggatcaccttcgccaagaccatgatcatc 268
||||||||||| |||||| | ||||||||||||| |||||||||| | |||||||||
Sbjct: 458 cggtggggcgtgatccagccaggcccgctgtggatcatcttcgccaagtcgatgatcatc 399
Query: 269 acgcttaaggaggagctcatcatccgcggcgacaagaccattgacggccgcggcgtgcag 328
||| | ||||||| | | || ||||||||||||| ||||| ||||||| ||||
Sbjct: 398 cagctctcgcaggagctgctggtgagcagcgacaagaccatcgacgggcgcggcgcgcag 339
Query: 329 gtgcgcatcaccaacggcgc 348
|||| |||| ||||||||||
Sbjct: 338 gtgcacatcgccaacggcgc 319
Score = 103 bits (52), Expect = 4e-020
Identities = 123/144 (85%), Gaps = 2/144 (1%)
Strand = Plus / Minus
Query: 507 ccaccaacgtgtggctggaccacctctccctctccaactgccaggacggcctcatcgacg 566
|||||||||||||| | |||||| ||||| | ||||||||| ||||||| ||||||||||
Sbjct: 166 ccaccaacgtgtggatcgaccacatctccatgtccaactgcgaggacgggctcatcgacg 107
Query: 567 tcatcgccaag-tccactggcgtcaccatctccaactgccacctcaccaaccacaacgac 625
| | || || ||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct: 106 tggt-gcagagctccacggggatcaccatctccaactgccacttcaccaaccacaacgac 48
Query: 626 gtcatgctcttcagctccagcgac 649
|| ||||| ||| || ||||||||
Sbjct: 47 gtgatgctgttcggcgccagcgac 24
>gb|CW230316.1|CW230316 104_679_11210473_148_37335_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11210473, DNA
sequence
Length = 670
Score = 119 bits (60), Expect = 7e-025
Identities = 255/320 (79%)
Strand = Plus / Minus
Query: 29 gcgacgaacccgatcgaccggtgctggcggtgccggcaggactgggcgacggaccggaag 88
|||||||||||||||||| ||||||||| ||| | | |||||||||||||||||
Sbjct: 454 gcgacgaacccgatcgacaagtgctggcgctgcaagaacgactgggcgacggaccgtttc 395
Query: 89 cgcctggcgcggtgcgccaaggggttcgggcgcaacaccaccggcgggctggccggcaag 148
|| ||||| |||||||||| ||| ||||||| ||||||||||| || | ||| |
Sbjct: 394 cgtctggcccggtgcgccaggggtttcgggcaggcgaccaccggcggcctcggcggtccg 335
Query: 149 ttctacgtggtgacggacggcaccgacgacgacgtggtgaacccgcgccccggcacgctc 208
||||| | |||||||| || ||||| ||||||||||||||| || || || ||||||
Sbjct: 334 atctacatcgtgacggatcccagcgacggcgacgtggtgaaccctcggccggggacgctc 275
Query: 209 cggtggggcgtcatccagatcgagccgctgtggatcaccttcgccaagaccatgatcatc 268
||||||||||| |||||| | ||||||||||||| |||||||||| | |||||||||
Sbjct: 274 cggtggggcgtgatccagccaggcccgctgtggatcatcttcgccaagtcgatgatcatc 215
Query: 269 acgcttaaggaggagctcatcatccgcggcgacaagaccattgacggccgcggcgtgcag 328
||| | ||||||| | | || ||||||||||||| ||||| ||||||| ||||
Sbjct: 214 cagctctcgcaggagctgctggtgagcagcgacaagaccatcgacgggcgcggcgcgcag 155
Query: 329 gtgcgcatcaccaacggcgc 348
|||| |||| ||||||||||
Sbjct: 154 gtgcacatcgccaacggcgc 135
>gb|CW048652.1|CW048652 104_287_10513538_114_30211 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10513538, DNA
sequence
Length = 453
Score = 103 bits (52), Expect = 4e-020
Identities = 193/240 (80%)
Strand = Plus / Minus
Query: 29 gcgacgaacccgatcgaccggtgctggcggtgccggcaggactgggcgacggaccggaag 88
|||||||||||||||||| ||||||||| ||| | | |||||||||||||||||
Sbjct: 251 gcgacgaacccgatcgacaagtgctggcgctgcaagaacgactgggcgacggaccgtttc 192
Query: 89 cgcctggcgcggtgcgccaaggggttcgggcgcaacaccaccggcgggctggccggcaag 148
|| ||||| |||||||||| ||| ||||||| ||||||||||| || | ||| |
Sbjct: 191 cgtctggcccggtgcgccaggggtttcgggcaggcgaccaccggcggcctcggcggtccg 132
Query: 149 ttctacgtggtgacggacggcaccgacgacgacgtggtgaacccgcgccccggcacgctc 208
||||| | |||||||| || ||||| ||||||||||||||| || || || ||||||
Sbjct: 131 atctacatcgtgacggatcccagcgacggcgacgtggtgaaccctcggccggggacgctc 72
Query: 209 cggtggggcgtcatccagatcgagccgctgtggatcaccttcgccaagaccatgatcatc 268
||||||||||| |||||| | ||||||||||||| |||||||||| | |||||||||
Sbjct: 71 cggtggggcgtgatccagccaggcccgctgtggatcatcttcgccaagtcgatgatcatc 12
>gb|CW408330.1|CW408330 fsbb001f102c22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f102c22, DNA
sequence
Length = 620
Score = 103 bits (52), Expect = 4e-020
Identities = 193/240 (80%)
Strand = Plus / Minus
Query: 29 gcgacgaacccgatcgaccggtgctggcggtgccggcaggactgggcgacggaccggaag 88
|||||||||||||||||| ||||||||| ||| | | |||||||||||||||||
Sbjct: 275 gcgacgaacccgatcgacaagtgctggcgctgcaagaacgactgggcgacggaccgtttc 216
Query: 89 cgcctggcgcggtgcgccaaggggttcgggcgcaacaccaccggcgggctggccggcaag 148
|| ||||| |||||||||| ||| ||||||| ||||||||||| || | ||| |
Sbjct: 215 cgtctggcccggtgcgccaggggtttcgggcaggcgaccaccggcggcctcggcggtccg 156
Query: 149 ttctacgtggtgacggacggcaccgacgacgacgtggtgaacccgcgccccggcacgctc 208
||||| | |||||||| || ||||| ||||||||||||||| || || || ||||||
Sbjct: 155 atctacatcgtgacggatcccagcgacggcgacgtggtgaaccctcggccggggacgctc 96
Query: 209 cggtggggcgtcatccagatcgagccgctgtggatcaccttcgccaagaccatgatcatc 268
||||||||||| |||||| | ||||||||||||| |||||||||| | |||||||||
Sbjct: 95 cggtggggcgtgatccagccaggcccgctgtggatcatcttcgccaagtcgatgatcatc 36
>gb|CW266971.1|CW266971 104_737_11400437_148_35293_031 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11400437, DNA
sequence
Length = 670
Score = 91.7 bits (46), Expect = 1e-016
Identities = 88/102 (86%)
Strand = Plus / Minus
Query: 745 cttccacgtggtcaacaacgactacacgcactggctcatgtacgccatcggcggcagcaa 804
||||||| | |||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 124 cttccacatcgtcaacaacgactacacgtcgtgggagatgtacgccatcggcggcagcgc 65
Query: 805 ggcccccaccatcatcagccagggcaaccgctacatcgcgcc 846
||||||||||| |||||||||||||||||||||||||||
Sbjct: 64 aaaccccaccatcaacagccagggcaaccgctacatcgcgcc 23
>gb|BE918972.1|BE918972 FM1_2_E02.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 527
Score = 85.7 bits (43), Expect = 9e-015
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 23 tgcagggcgacgaacccgatcgaccggtgctggcggtgccggcaggactgggcgacggac 82
|||| |||||| ||||| ||||||||||||||||| ||||| ||||||||| |||||
Sbjct: 429 tgcatggcgaccaaccccatcgaccggtgctggcgctgccgctccgactgggcggcggac 488
Query: 83 cggaagcgcctggcgcggtgcgc 105
||||||||||| |||||||||||
Sbjct: 489 cggaagcgccttgcgcggtgcgc 511
>gb|CF484998.1|CF484998 POL1_28_G06.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_28_G06_A002 5', mRNA sequence
Length = 602
Score = 61.9 bits (31), Expect = 1e-007
Identities = 76/91 (83%)
Strand = Plus / Plus
Query: 29 gcgacgaacccgatcgaccggtgctggcggtgccggcaggactgggcgacggaccggaag 88
|||||||||||||||||| ||||||||| ||| | | |||||||||||||||||
Sbjct: 421 gcgacgaacccgatcgacaagtgctggcgctgcaagaacgactgggcgacggaccgtttc 480
Query: 89 cgcctggcgcggtgcgccaaggggttcgggc 119
|| ||||| |||||||||| ||| |||||||
Sbjct: 481 cgtctggcccggtgcgccaggggtttcgggc 511
>gb|CW328835.1|CW328835 104_825_11479519_116_35999_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479519, DNA
sequence
Length = 614
Score = 58.0 bits (29), Expect = 2e-006
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 259 catgatcatcacgcttaaggaggagctcatcatccgcggcgacaagaccattgacggccg 318
|||| |||||||||| ||||||||||||||||| | || ||||||||| ||||||||
Sbjct: 376 catggtcatcacgctcaaggaggagctcatcatgaacagcttcaagaccatcgacggccg 435
Query: 319 cggcg 323
|||||
Sbjct: 436 cggcg 440
>gb|CW328836.1|CW328836 104_825_11479519_148_36000_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479519, DNA
sequence
Length = 712
Score = 58.0 bits (29), Expect = 2e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 259 catgatcatcacgcttaaggaggagctcatcatccgcggcgacaagaccattgacggccg 318
|||| |||||||||| ||||||||||||||||| | || ||||||||| ||||||||
Sbjct: 483 catggtcatcacgctcaaggaggagctcatcatgaacagcttcaagaccatcgacggccg 424
Query: 319 cggcg 323
|||||
Sbjct: 423 cggcg 419
Score = 46.1 bits (23), Expect = 0.008
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 498 tcttcggctccaccaacgtgtggctggaccacctctccctctccaactgccaggacggcc 557
|||||||||||| | |||| ||| |||||||| ||| |||||||||||| |||||||
Sbjct: 250 tcttcggctccagccacgtctgggtggaccactgctcactctccaactgcgccgacggcc 191
Query: 558 tcatcga 564
| |||||
Sbjct: 190 tgatcga 184
>gb|BG560336.1|BG560336 RHIZ2_73_B09.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 557
Score = 58.0 bits (29), Expect = 2e-006
Identities = 95/117 (81%)
Strand = Plus / Plus
Query: 722 atgccaaggtgccgctggggcttcttccacgtggtcaacaacgactacacgcactggctc 781
|||||||||||||| |||| |||||| || || ||||| |||||||| ||||||
Sbjct: 91 atgccaaggtgccggcatggctacttccatgttgtgaacaatgactacacccactgggaa 150
Query: 782 atgtacgccatcggcggcagcaaggcccccaccatcatcagccagggcaaccgctac 838
||||||||||| ||||| ||| | || ||||||| |||||||||||||||||||
Sbjct: 151 atgtacgccattggcgggagcgctgagcctaccatcaacagccagggcaaccgctac 207
>gb|CL189041.1|CL189041 104_406_10902014_114_32468_063 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10902014, DNA
sequence
Length = 660
Score = 54.0 bits (27), Expect = 3e-005
Identities = 81/99 (81%)
Strand = Plus / Minus
Query: 740 ggcttcttccacgtggtcaacaacgactacacgcactggctcatgtacgccatcggcggc 799
|||| |||||| || || ||||| |||||||| |||||| ||||||||||| |||||
Sbjct: 411 ggctacttccatgttgtgaacaatgactacacccactgggaaatgtacgccattggcggg 352
Query: 800 agcaaggcccccaccatcatcagccagggcaaccgctac 838
||| | || ||||||| |||||||||||||||||||
Sbjct: 351 agcgctgagcctaccatcaacagccagggcaaccgctac 313
>gb|CW198850.1|CW198850 104_623_11183195_116_36840_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11183195, DNA
sequence
Length = 729
Score = 54.0 bits (27), Expect = 3e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 901 gtggaagaactgggtgtggcactccgagaacgacctcttcatg 943
|||||||||||||||||||||| | ||| ||||||| ||||||
Sbjct: 37 gtggaagaactgggtgtggcacacggaggacgacctgttcatg 79
>gb|CF484914.1|CF484914 POL1_28_G06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_28_G06_A002 3', mRNA sequence
Length = 601
Score = 54.0 bits (27), Expect = 3e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 901 gtggaagaactgggtgtggcactccgagaacgacctcttcatg 943
|||||||||||||||||||||| | ||| ||||||| ||||||
Sbjct: 39 gtggaagaactgggtgtggcacacggaggacgacctgttcatg 81
>gb|CW333051.1|CW333051 104_830_11481737_148_36039_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481737, DNA
sequence
Length = 629
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 125 accaccggcgggctggccggcaagttctacgtggtgac 162
|||||||||||||| ||||||| | |||||||||||||
Sbjct: 83 accaccggcgggctcgccggcaggatctacgtggtgac 120
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 297 gcgacaagaccattgacggccgcggcgtgcaggtgc 332
||||||||||||| ||||| ||||||| ||||||||
Sbjct: 261 gcgacaagaccatcgacgggcgcggcgcgcaggtgc 296
>gb|CW100366.1|CW100366 104_467_11004060_116_34389_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11004060, DNA
sequence
Length = 530
Score = 50.1 bits (25), Expect = 5e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 200 ggcacgctccggtggggcgtcatccagatcgagccgctgtggatcaccttcgc 252
||||||||||| | |||||||||||| ||||||||||||||||| |||||
Sbjct: 497 ggcacgctccgctacggcgtcatccagcaggagccgctgtggatcacgttcgc 445
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 485 gacggcatcaccgtcttcggctccaccaacgtgtgg 520
|||||||||||||| ||| |||||||| ||||||||
Sbjct: 242 gacggcatcaccgtgttcagctccaccgacgtgtgg 207
>gb|CW253678.1|CW253678 104_717_11225229_148_35108_089 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11225229, DNA
sequence
Length = 617
Score = 50.1 bits (25), Expect = 5e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 200 ggcacgctccggtggggcgtcatccagatcgagccgctgtggatcaccttcgc 252
||||||||||| | |||||||||||| ||||||||||||||||| |||||
Sbjct: 251 ggcacgctccgctacggcgtcatccagcaggagccgctgtggatcacgttcgc 303
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 485 gacggcatcaccgtcttcggctccaccaacgtgtgg 520
|||||||||||||| ||| |||||||| ||||||||
Sbjct: 506 gacggcatcaccgtgttcagctccaccgacgtgtgg 541
>gb|AC169370.3| Sorghum bicolor clone SB_BBc0011I20, WORKING DRAFT SEQUENCE, 9
unordered pieces
Length = 143922
Score = 50.1 bits (25), Expect = 5e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 200 ggcacgctccggtggggcgtcatccagatcgagccgctgtggatcaccttcgc 252
||||||||||| | |||||||||||| ||||||||||||||||| |||||
Sbjct: 48378 ggcacgctccgctacggcgtcatccagcaggagccgctgtggatcacgttcgc 48326
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 485 gacggcatcaccgtcttcggctccaccaacgtgtgg 520
|||||||||||||| ||| |||||||| ||||||||
Sbjct: 48123 gacggcatcaccgtgttcagctccaccgacgtgtgg 48088
>gb|CW214306.1|CW214306 104_646_11193944_148_37053_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11193944, DNA
sequence
Length = 703
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 485 gacggcatcaccgtcttcggctccaccaacgtgtgg 520
|||||||||||||| ||| |||||||| ||||||||
Sbjct: 74 gacggcatcaccgtgttcagctccaccgacgtgtgg 109
>gb|CW368387.1|CW368387 fsbb001f042f08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f042f08, DNA
sequence
Length = 536
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 485 gacggcatcaccgtcttcggctccaccaacgtgtgg 520
|||||||||||||| ||| |||||||| ||||||||
Sbjct: 354 gacggcatcaccgtgttcagctccaccgacgtgtgg 319
>gb|CW059843.1|CW059843 104_303_10519542_1_30042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10519542,
DNA sequence
Length = 591
Score = 44.1 bits (22), Expect = 0.031
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 28 ggcgacgaacccgatcgaccggtgct 53
||||||||||||||||||||| ||||
Sbjct: 26 ggcgacgaacccgatcgaccgttgct 1
>gb|CW380541.1|CW380541 fsbb001f061g11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f061g11, DNA
sequence
Length = 507
Score = 44.1 bits (22), Expect = 0.031
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 498 tcttcggctccaccaacgtgtggctggaccacctctccctctccaactgc 547
|||||||||||| | |||| ||| |||||||| ||| ||||||||||||
Sbjct: 323 tcttcggctccagccacgtctgggtggaccactgctcactctccaactgc 274
>gb|BF655654.1|BF655654 FM1_47_B10.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 365
Score = 44.1 bits (22), Expect = 0.031
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 266 atcacgcttaaggaggagctcatcat 291
|||||||| |||||||||||||||||
Sbjct: 329 atcacgctcaaggaggagctcatcat 354
>gb|CD428553.1|CD428553 ETH1_27_D03.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_27_D03_A002 5', mRNA sequence
Length = 562
Score = 42.1 bits (21), Expect = 0.12
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 736 ctggggcttcttccacgtggtcaac 760
||||||||||||||| |||||||||
Sbjct: 431 ctggggcttcttccaggtggtcaac 455
>gb|CF488924.1|CF488924 POL1_53_C05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_53_C05_A002 3', mRNA sequence
Length = 662
Score = 42.1 bits (21), Expect = 0.12
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 736 ctggggcttcttccacgtggtcaac 760
||||||||||||||| |||||||||
Sbjct: 98 ctggggcttcttccaggtggtcaac 74
>gb|CN129274.1|CN129274 RHOH1_34_B04.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_34_B04_A002 5', mRNA sequence
Length = 782
Score = 42.1 bits (21), Expect = 0.12
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 736 ctggggcttcttccacgtggtcaac 760
||||||||||||||| |||||||||
Sbjct: 426 ctggggcttcttccaggtggtcaac 450
>gb|CW060595.1|CW060595 104_304_10519937_115_30144 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10519937, DNA
sequence
Length = 550
Score = 40.1 bits (20), Expect = 0.49
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 745 cttccacgtggtcaacaacgactacacg 772
||||||| | ||||||||||||||||||
Sbjct: 41 cttccacatcgtcaacaacgactacacg 14
>gb|CW397027.1|CW397027 fsbb001f085l20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f085l20, DNA
sequence
Length = 258
Score = 40.1 bits (20), Expect = 0.49
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 537 tctccaactgccaggacggc 556
||||||||||||||||||||
Sbjct: 236 tctccaactgccaggacggc 217
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 422,554
Number of Sequences: 832831
Number of extensions: 422554
Number of successful extensions: 120591
Number of sequences better than 0.5: 40
Number of HSP's better than 0.5 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 120411
Number of HSP's gapped (non-prelim): 164
length of query: 1273
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1253
effective length of database: 474,703,049
effective search space: 594802920397
effective search space used: 594802920397
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)