BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3191640.2.1
(923 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CL187602.1|CL187602 104_403_10901000_116_32464_026 Sorgh... 803 0.0
gb|CL149387.1|CL149387 104_330_10777794_114_31353_114 Sorgh... 733 0.0
gb|CW333143.1|CW333143 104_831_11481784_148_36046_064 Sorgh... 710 0.0
gb|CW258561.1|CW258561 104_724_11227944_148_35167_088 Sorgh... 694 0.0
gb|CL187601.1|CL187601 104_403_10901000_114_32460_026 Sorgh... 672 0.0
gb|CW406843.1|CW406843 fsbb001f100a22k0 Sorghum methylation... 630 e-179
gb|BG739374.1|BG739374 EM1_82_B09.g1_A002 Embryo 1 (EM1) So... 519 e-145
gb|CW043621.1|CW043621 104_279_10508479_114_30273 Sorghum m... 474 e-132
gb|CW333142.1|CW333142 104_831_11481784_116_36045_064 Sorgh... 460 e-127
gb|CW494638.1|CW494638 fsbb001f286a15k0 Sorghum methylation... 369 e-100
gb|BG357591.1|BG357591 OV2_31_G11.g1_A002 Ovary 2 (OV2) Sor... 198 6e-049
gb|CF483069.1|CF483069 POL1_11_C05.b1_A002 Pollen Sorghum b... 182 4e-044
gb|BG239969.1|BG239969 OV1_31_D01.g1_A002 Ovary 1 (OV1) Sor... 180 2e-043
gb|CW270778.1|CW270778 104_742_11402626_148_35337_037 Sorgh... 68 2e-009
gb|BH246023.1|BH246023 pSB1633.1 S. bicolor BTx623 PstI-dig... 66 6e-009
gb|BZ422208.1|BZ422208 id51a01.b1 WGS-SbicolorF (DH5a methy... 66 6e-009
gb|CL196999.1|CL196999 104_423_10943444_114_32326_070 Sorgh... 66 6e-009
gb|CL197000.1|CL197000 104_423_10943444_116_32330_070 Sorgh... 66 6e-009
gb|BG322873.1|BG322873 EM1_15_B11.b1_A002 Embryo 1 (EM1) So... 66 6e-009
gb|BG323126.1|BG323126 EM1_15_B11.g1_A002 Embryo 1 (EM1) So... 66 6e-009
gb|BG355410.1|BG355410 EM1_16_B04.b1_A002 Embryo 1 (EM1) So... 66 6e-009
gb|CW182308.1|CW182308 104_597_11164002_116_36658_067 Sorgh... 64 2e-008
gb|CW330183.1|CW330183 104_827_11480239_116_36007_032 Sorgh... 64 2e-008
gb|CW330184.1|CW330184 104_827_11480239_148_36008_032 Sorgh... 64 2e-008
gb|CW032166.1|CW032166 104_261_10501225_114_30363 Sorghum m... 56 6e-006
gb|CW086368.1|CW086368 104_430_10946932_116_33018_012 Sorgh... 56 6e-006
gb|CW133225.1|CW133225 104_516_11116645_116_34806_049 Sorgh... 56 6e-006
gb|CW264408.1|CW264408 104_733_11231276_116_35256_078 Sorgh... 56 6e-006
gb|CW320260.1|CW320260 104_813_11474922_116_35901_077 Sorgh... 56 6e-006
gb|CW320261.1|CW320261 104_813_11474922_148_35897_077 Sorgh... 56 6e-006
gb|CW369157.1|CW369157 fsbb001f043h04f0 Sorghum methylation... 56 6e-006
gb|CW394746.1|CW394746 fsbb001f082h21k0 Sorghum methylation... 56 6e-006
gb|CW412966.1|CW412966 fsbb001f108o03f0 Sorghum methylation... 56 6e-006
gb|BF587798.1|BF587798 FM1_40_F09.g1_A003 Floral-Induced Me... 56 6e-006
gb|BZ422085.1|BZ422085 id49d07.b1 WGS-SbicolorF (DH5a methy... 52 9e-005
gb|CW067644.1|CW067644 104_315_10524410_115_30125 Sorghum m... 52 9e-005
gb|CW097817.1|CW097817 104_464_11002670_148_34365_061 Sorgh... 52 9e-005
gb|CW179407.1|CW179407 104_593_11160083_148_36629_040 Sorgh... 52 9e-005
gb|CW233308.1|CW233308 104_686_11213332_116_37372_008 Sorgh... 52 9e-005
gb|CW245686.1|CW245686 104_706_11221077_148_35074_085 Sorgh... 52 9e-005
gb|CW245687.1|CW245687 104_706_11221077_148_37594_085 Sorgh... 52 9e-005
gb|CW345745.1|CW345745 104_849_11488663_116_36213_032 Sorgh... 52 9e-005
gb|CW345746.1|CW345746 104_849_11488663_148_36214_032 Sorgh... 52 9e-005
gb|CW405409.1|CW405409 fsbb001f097p05f0 Sorghum methylation... 52 9e-005
gb|BZ423602.1|BZ423602 id51c01.g1 WGS-SbicolorF (DH5a methy... 50 4e-004
gb|CL165002.1|CL165002 104_359_10808294_114_31816_278 Sorgh... 50 4e-004
gb|CW197885.1|CW197885 104_622_11181920_148_36831_026 Sorgh... 50 4e-004
gb|CW241738.1|CW241738 104_701_11218937_148_37556_079 Sorgh... 50 4e-004
gb|CW323366.1|CW323366 104_817_11476592_148_35963_024 Sorgh... 50 4e-004
gb|CW463314.1|CW463314 fsbb001f211n16f0 Sorghum methylation... 50 4e-004
gb|BG239833.1|BG239833 OV1_29_F03.g1_A002 Ovary 1 (OV1) Sor... 50 4e-004
gb|BG240402.1|BG240402 OV1_29_F03.b1_A002 Ovary 1 (OV1) Sor... 50 4e-004
gb|BG411749.1|BG411749 OV2_37_E12.g1_A002 Ovary 2 (OV2) Sor... 50 4e-004
gb|CF480173.1|CF480173 POL1_64_D11.b1_A002 Pollen Sorghum b... 50 4e-004
gb|CF480188.1|CF480188 POL1_64_G01.b1_A002 Pollen Sorghum b... 50 4e-004
gb|CF480656.1|CF480656 POL1_67_D01.b1_A002 Pollen Sorghum b... 50 4e-004
gb|CF480663.1|CF480663 POL1_67_D09.b1_A002 Pollen Sorghum b... 50 4e-004
gb|CF481307.1|CF481307 POL1_71_E06.b1_A002 Pollen Sorghum b... 50 4e-004
gb|CF481619.1|CF481619 POL1_73_B09.b1_A002 Pollen Sorghum b... 50 4e-004
gb|CF481916.1|CF481916 POL1_75_D02.b1_A002 Pollen Sorghum b... 50 4e-004
gb|CF481930.1|CF481930 POL1_75_E11.b1_A002 Pollen Sorghum b... 50 4e-004
gb|CF482926.1|CF482926 POL1_10_C07.b1_A002 Pollen Sorghum b... 50 4e-004
gb|CF483278.1|CF483278 POL1_21_D07.b1_A002 Pollen Sorghum b... 50 4e-004
gb|CF485402.1|CF485402 POL1_31_G04.b1_A002 Pollen Sorghum b... 50 4e-004
gb|CF485728.1|CF485728 POL1_33_F06.b1_A002 Pollen Sorghum b... 50 4e-004
gb|CF486155.1|CF486155 POL1_36_C04.b1_A002 Pollen Sorghum b... 50 4e-004
gb|CF486365.1|CF486365 POL1_37_F12.b1_A002 Pollen Sorghum b... 50 4e-004
gb|CF487334.1|CF487334 POL1_43_D12.b1_A002 Pollen Sorghum b... 50 4e-004
gb|CF487982.1|CF487982 POL1_47_C02.b1_A002 Pollen Sorghum b... 50 4e-004
gb|CF488593.1|CF488593 POL1_51_A10.b1_A002 Pollen Sorghum b... 50 4e-004
gb|CF489185.1|CF489185 POL1_55_F02.b1_A002 Pollen Sorghum b... 50 4e-004
gb|CF489342.1|CF489342 POL1_57_B05.b1_A002 Pollen Sorghum b... 50 4e-004
gb|CF489359.1|CF489359 POL1_57_D04.b1_A002 Pollen Sorghum b... 50 4e-004
gb|CL155266.1|CL155266 104_341_10782005_116_31472_101 Sorgh... 48 0.001
gb|CW050592.1|CW050592 104_290_10514748_115_30205 Sorghum m... 48 0.001
gb|CW160106.1|CW160106 104_566_11149707_148_36427_008 Sorgh... 48 0.001
gb|CW208653.1|CW208653 104_638_11188789_148_36982_059 Sorgh... 48 0.001
gb|CW233309.1|CW233309 104_686_11213332_148_37371_008 Sorgh... 48 0.001
gb|CW271205.1|CW271205 104_743_11402872_116_35341_060 Sorgh... 48 0.001
gb|CW309832.1|CW309832 104_798_11469399_116_35733_052 Sorgh... 48 0.001
gb|CW309833.1|CW309833 104_798_11469399_148_35741_052 Sorgh... 48 0.001
gb|CW312481.1|CW312481 104_802_11470780_116_35783_010 Sorgh... 48 0.001
gb|CW323759.1|CW323759 104_818_11476800_148_35909_096 Sorgh... 48 0.001
gb|CW421378.1|CW421378 fsbb001f130c19k0 Sorghum methylation... 48 0.001
gb|CW446664.1|CW446664 fsbb001f179g22f0 Sorghum methylation... 48 0.001
gb|CW470062.1|CW470062 fsbb001f223b09f0 Sorghum methylation... 48 0.001
gb|BG412065.1|BG412065 OV2_37_E12.b1_A002 Ovary 2 (OV2) Sor... 48 0.001
gb|CF480256.1|CF480256 POL1_64_D11.g1_A002 Pollen Sorghum b... 48 0.001
gb|CF480740.1|CF480740 POL1_67_D01.g1_A002 Pollen Sorghum b... 48 0.001
gb|CF481389.1|CF481389 POL1_71_E06.g1_A002 Pollen Sorghum b... 48 0.001
gb|CF482996.1|CF482996 POL1_10_C07.g1_A002 Pollen Sorghum b... 48 0.001
gb|CF485801.1|CF485801 POL1_33_F06.g1_A002 Pollen Sorghum b... 48 0.001
gb|CF489422.1|CF489422 POL1_57_B05.g1_A002 Pollen Sorghum b... 48 0.001
gb|CF490015.1|CF490015 POL1_62_A05.b1_A002 Pollen Sorghum b... 48 0.001
gb|CL196650.1|CL196650 104_423_10943198_114_32326_063 Sorgh... 46 0.006
gb|CL196651.1|CL196651 104_423_10943198_116_32330_063 Sorgh... 46 0.006
gb|CW036659.1|CW036659 104_268_10503899_114_30381 Sorghum m... 46 0.006
gb|CW039367.1|CW039367 104_272_10505460_115_30390 Sorghum m... 46 0.006
gb|CW260257.1|CW260257 104_726_11228865_148_35188_033 Sorgh... 46 0.006
gb|CF480747.1|CF480747 POL1_67_D09.g1_A002 Pollen Sorghum b... 46 0.006
gb|CF481907.1|CF481907 POL1_75_C02.b1_A002 Pollen Sorghum b... 46 0.006
gb|CF487417.1|CF487417 POL1_43_D12.g1_A002 Pollen Sorghum b... 46 0.006
gb|CF489932.1|CF489932 POL1_61_B02.g1_A002 Pollen Sorghum b... 46 0.006
gb|CW097816.1|CW097816 104_464_11002670_116_34361_061 Sorgh... 44 0.023
gb|CW145709.1|CW145709 104_538_11138608_148_34981_058 Sorgh... 44 0.023
gb|CW194907.1|CW194907 104_618_11180352_116_36796_092 Sorgh... 44 0.023
gb|CW194908.1|CW194908 104_618_11180352_148_36800_092 Sorgh... 44 0.023
gb|CW202778.1|CW202778 104_629_11185276_116_36913_014 Sorgh... 44 0.023
gb|CW220245.1|CW220245 104_654_11197249_148_37146_001 Sorgh... 44 0.023
gb|CW231978.1|CW231978 104_681_11211414_116_37346_023 Sorgh... 44 0.023
gb|CW231979.1|CW231979 104_681_11211414_148_37350_023 Sorgh... 44 0.023
gb|CW232350.1|CW232350 104_685_11212772_116_37364_080 Sorgh... 44 0.023
gb|CW245685.1|CW245685 104_706_11221077_116_35078_085 Sorgh... 44 0.023
gb|CW469590.1|CW469590 fsbb001f222g06k0 Sorghum methylation... 44 0.023
gb|AW679439.1|AW679439 WS1_24_E12.g1_A002 Water-stressed 1 ... 44 0.023
gb|BE597262.1|BE597262 PI1_70_B02.g1_A002 Pathogen induced ... 44 0.023
gb|BI098131.1|BI098131 IP1_32_D12.g1_A002 Immature pannicle... 44 0.023
gb|BI098442.1|BI098442 IP1_32_D12.b1_A002 Immature pannicle... 44 0.023
gb|CD212571.1|CD212571 HS1_6_F12.b1_A012 Heat-shocked seedl... 44 0.023
gb|CD213604.1|CD213604 HS1_52_B12.b1_A012 Heat-shocked seed... 44 0.023
gb|CD462003.1|CD462003 SA1_36_H06.b1_A002 Salicylic acid-tr... 44 0.023
gb|CW039366.1|CW039366 104_272_10505460_114_30389 Sorghum m... 42 0.090
gb|CF482303.1|CF482303 POL1_6_D06.b1_A002 Pollen Sorghum bi... 42 0.090
gb|CF486033.1|CF486033 POL1_35_F09.b1_A002 Pollen Sorghum b... 42 0.090
gb|CL191437.1|CL191437 104_410_10906802_116_32537_007 Sorgh... 40 0.35
gb|CL196866.1|CL196866 104_423_10943350_114_32326_089 Sorgh... 40 0.35
gb|CW181409.1|CW181409 104_596_11163492_116_36654_042 Sorgh... 40 0.35
gb|CW197884.1|CW197884 104_622_11181920_116_36832_026 Sorgh... 40 0.35
gb|CW237483.1|CW237483 104_693_11216193_148_37517_033 Sorgh... 40 0.35
gb|CW369343.1|CW369343 fsbb001f043l11k0 Sorghum methylation... 40 0.35
gb|CW390139.1|CW390139 fsbb001f075k21k0 Sorghum methylation... 40 0.35
gb|BG048519.1|BG048519 OV1_14_E10.g2_A002 Ovary 1 (OV1) Sor... 40 0.35
gb|BG048591.1|BG048591 OV1_14_E10.b1_A002 Ovary 1 (OV1) Sor... 40 0.35
gb|CF481266.1|CF481266 POL1_71_A04.b1_A002 Pollen Sorghum b... 40 0.35
gb|CF481314.1|CF481314 POL1_71_F02.b1_A002 Pollen Sorghum b... 40 0.35
gb|CF481922.1|CF481922 POL1_75_D09.b1_A002 Pollen Sorghum b... 40 0.35
gb|CF484442.1|CF484442 POL1_25_H01.b1_A002 Pollen Sorghum b... 40 0.35
gb|CF488327.1|CF488327 POL1_49_E07.b1_A002 Pollen Sorghum b... 40 0.35
gb|CF488802.1|CF488802 POL1_52_G02.b1_A002 Pollen Sorghum b... 40 0.35
gb|CF489718.1|CF489718 POL1_59_F04.b1_A002 Pollen Sorghum b... 40 0.35
>gb|CL187602.1|CL187602 104_403_10901000_116_32464_026 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10901000, DNA
sequence
Length = 712
Score = 803 bits (405), Expect = 0.0
Identities = 630/705 (89%)
Strand = Plus / Minus
Query: 6 gaccaacggcactatttccggaattaaactactcaactccaaattcttccacatcaacat 65
||||||||||||| | || ||||| ||||||||||||||||| |||||||||||||| ||
Sbjct: 708 gaccaacggcactgtctctggaatcaaactactcaactccaagttcttccacatcaatat 649
Query: 66 cgacacttctaaggacatcaccgtgaaggatgtgaacatcacggcgcccgcggacgtcga 125
|||| |||| ||| ||||||| |||||||| ||||||||||| ||||| | |||||| ||
Sbjct: 648 cgacgcttcaaagaacatcacggtgaaggacgtgaacatcaccgcgcctggggacgttga 589
Query: 126 gaacacggacggcgtccatgtcggcgggtcctccaatgtacgcatcaccaactcgaccat 185
||||||||||||||||||||| || |||| |||| || ||||||||||||| |||||
Sbjct: 588 gaacacggacggcgtccatgttggaatgtccaccaaggtgagcatcaccaactcaaccat 529
Query: 186 tggcaccggcgacgactgcgtctccatcggccctgggagcgacggtgtcatggtgaacaa 245
||||| |||||||||||| |||| | ||||| ||||||||||| ||||||||||||||
Sbjct: 528 cggcactggcgacgactgcatctctgttggccccgggagcgacggcgtcatggtgaacaa 469
Query: 246 catcacctgtggccccgggcagggcatcagtgtgggctgcctaggccgctacaaggatga 305
||||| ||| |||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 468 catcatctgcggccccgggcagggcatcagcatcggctgcctaggccgctacaaggatga 409
Query: 306 gaaggacgtgagcgacgtgacggtgcgggattgcgtgcttaggaacaccaccaacggcgt 365
||||||||||| |||||||||||||||||| |||||||| | ||| ||||| ||||||||
Sbjct: 408 gaaggacgtgaccgacgtgacggtgcgggactgcgtgctcaagaagaccactaacggcgt 349
Query: 366 gcgcatcaagtcgtacgaggatgccgagtctgtgctcacggcgtcccatctcaccttcga 425
||||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||||||
Sbjct: 348 gcgcatcaagtcgtacgaggacgccgagtctgtgctgacggcgtcgcatctgaccttcga 289
Query: 426 gaacatcaggatggaggaggtggccaaccccatcatcatcgaccagtacttctgccccca 485
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 288 gaacatcaggatggaggaggtggcgaaccccatcatcatcgaccagtacttctgccccga 229
Query: 486 gaaggtctgccccggcaagcgaagcaactcctcgcatgtctccatcaaggacgtcacctt 545
|||||| |||||||||||| ||| ||||||| |||||| | ||||||||||||| ||
Sbjct: 228 gaaggtgtgccccggcaagaagagcgactcctctcatgtcatcgtcaaggacgtcacgtt 169
Query: 546 ccgcaacatctccggcacgtcgtccacgcccgaagccgtcagcctgctctgctccgagac 605
|||||||||| | ||||||||||||||||| | ||| |||||||||||||||| || |
Sbjct: 168 ccgcaacatcacgggcacgtcgtccacgccacaggccatcagcctgctctgctcgcagtc 109
Query: 606 gcagccgtgcagcggcgtctcgctcatcgatgtcaacgtcgagtacgccggcaagaacaa 665
||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 108 acagccatgcagcggcgtgtcgctcatcgatgtaaacgtggagtacgccggcaagaacaa 49
Query: 666 caagaccatggctgtgtgcagcaacgccaagggaaccgccaaggg 710
|||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 48 caagaccatggccgtgtgcagcaacgccaagggcaccgccaaggg 4
>gb|CL149387.1|CL149387 104_330_10777794_114_31353_114 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10777794, DNA
sequence
Length = 711
Score = 733 bits (370), Expect = 0.0
Identities = 595/670 (88%)
Strand = Plus / Minus
Query: 97 gtgaacatcacggcgcccgcggacgtcgagaacacggacggcgtccatgtcggcgggtcc 156
||||||||||| ||||| | |||||| ||||||||||||||||||||||| || ||||
Sbjct: 707 gtgaacatcaccgcgcctggggacgttgagaacacggacggcgtccatgttggaatgtcc 648
Query: 157 tccaatgtacgcatcaccaactcgaccattggcaccggcgacgactgcgtctccatcggc 216
|||| || ||||||||||||| ||||| ||||| |||||||||||| |||| | |||
Sbjct: 647 accaaggtgagcatcaccaactcaaccatcggcactggcgacgactgcatctctgttggc 588
Query: 217 cctgggagcgacggtgtcatggtgaacaacatcacctgtggccccgggcagggcatcagt 276
|| ||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 587 cccgggagcgacggcgtcatggtgaacaacatcatctgcggccccgggcagggcatcagc 528
Query: 277 gtgggctgcctaggccgctacaaggatgagaaggacgtgagcgacgtgacggtgcgggat 336
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 527 atcggctgcctaggccgctacaaggatgagaaggacgtgaccgacgtgacggtgcgggac 468
Query: 337 tgcgtgcttaggaacaccaccaacggcgtgcgcatcaagtcgtacgaggatgccgagtct 396
|||||||| | ||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 467 tgcgtgctcaagaagaccactaacggcgtgcgcatcaagtcgtacgaggacgccgagtct 408
Query: 397 gtgctcacggcgtcccatctcaccttcgagaacatcaggatggaggaggtggccaacccc 456
||||| |||||||| ||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 407 gtgctgacggcgtcgcatctgaccttcgagaacatcaggatggaggaggtggcgaacccc 348
Query: 457 atcatcatcgaccagtacttctgcccccagaaggtctgccccggcaagcgaagcaactcc 516
||||||||||||||||||||||||||| ||||||| |||||||||||| ||| |||||
Sbjct: 347 atcatcatcgaccagtacttctgccccgagaaggtgtgccccggcaagaagagcgactcc 288
Query: 517 tcgcatgtctccatcaaggacgtcaccttccgcaacatctccggcacgtcgtccacgccc 576
|| |||||| | ||||||||||||| |||||||||||| | |||||||||||||||||
Sbjct: 287 tctcatgtcatcgtcaaggacgtcacgttccgcaacatcacgggcacgtcgtccacgcca 228
Query: 577 gaagccgtcagcctgctctgctccgagacgcagccgtgcagcggcgtctcgctcatcgat 636
| ||| |||||||||||||||| || | ||||| ||||||||||| ||||||||||||
Sbjct: 227 caggccatcagcctgctctgctcgcagtcacagccatgcagcggcgtgtcgctcatcgat 168
Query: 637 gtcaacgtcgagtacgccggcaagaacaacaagaccatggctgtgtgcagcaacgccaag 696
|| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 167 gtaaacgtggagtacgccggcaagaacaacaagaccatggccgtgtgcagcaacgccaag 108
Query: 697 ggaaccgccaagggaagcctccaggccctggattgcctcgtctgatcgatgaccttgcat 756
|| ||||||||||| ||| || ||||||||| ||||| | |||| |||||| | |||||
Sbjct: 107 ggcaccgccaagggcagcgtcgaggccctggcatgcctggcctgagcgatgagcatgcat 48
Query: 757 ttgcatgcat 766
|||||||||
Sbjct: 47 ctgcatgcat 38
>gb|CW333143.1|CW333143 104_831_11481784_148_36046_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481784, DNA
sequence
Length = 660
Score = 710 bits (358), Expect = 0.0
Identities = 568/638 (89%)
Strand = Plus / Plus
Query: 25 ggaattaaactactcaactccaaattcttccacatcaacatcgacacttctaaggacatc 84
||||| ||||||||||||||||| |||||||||||||| |||||| |||| ||| |||||
Sbjct: 10 ggaatcaaactactcaactccaagttcttccacatcaatatcgacgcttcaaagaacatc 69
Query: 85 accgtgaaggatgtgaacatcacggcgcccgcggacgtcgagaacacggacggcgtccat 144
|| |||||||| ||||||||||| ||||| | |||||| |||||||||||||||||||||
Sbjct: 70 acggtgaaggacgtgaacatcaccgcgcctggggacgttgagaacacggacggcgtccat 129
Query: 145 gtcggcgggtcctccaatgtacgcatcaccaactcgaccattggcaccggcgacgactgc 204
|| || |||| |||| || ||||||||||||| ||||| ||||| ||||||||||||
Sbjct: 130 gttggaatgtccaccaaggtgagcatcaccaactcaaccatcggcactggcgacgactgc 189
Query: 205 gtctccatcggccctgggagcgacggtgtcatggtgaacaacatcacctgtggccccggg 264
|||| | ||||| ||||||||||| ||||||||||||||||||| ||| |||||||||
Sbjct: 190 atctctgttggccccgggagcgacggcgtcatggtgaacaacatcatctgcggccccggg 249
Query: 265 cagggcatcagtgtgggctgcctaggccgctacaaggatgagaaggacgtgagcgacgtg 324
||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 250 cagggcatcagcatcggctgcctaggccgctacaaggatgagaaggacgtgaccgacgtg 309
Query: 325 acggtgcgggattgcgtgcttaggaacaccaccaacggcgtgcgcatcaagtcgtacgag 384
||||||||||| |||||||| | ||| ||||| |||||||||||||||||||||||||||
Sbjct: 310 acggtgcgggactgcgtgctcaagaagaccactaacggcgtgcgcatcaagtcgtacgag 369
Query: 385 gatgccgagtctgtgctcacggcgtcccatctcaccttcgagaacatcaggatggaggag 444
|| |||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 370 gacgccgagtctgtgctgacggcgtcgcatctgaccttcgagaacatcaggatggaggag 429
Query: 445 gtggccaaccccatcatcatcgaccagtacttctgcccccagaaggtctgccccggcaag 504
||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 430 gtggcgaaccccatcatcatcgaccagtacttctgccccgagaaggtgtgccccggcaag 489
Query: 505 cgaagcaactcctcgcatgtctccatcaaggacgtcaccttccgcaacatctccggcacg 564
||| ||||||| |||||| | ||||||||||||| |||||||||||| | ||||||
Sbjct: 490 aagagcgactcctctcatgtcatcgtcaaggacgtcacgttccgcaacatcacgggcacg 549
Query: 565 tcgtccacgcccgaagccgtcagcctgctctgctccgagacgcagccgtgcagcggcgtc 624
||||||||||| | ||| |||||||||||||||| || | ||||| |||||||||||
Sbjct: 550 tcgtccacgccacaggccatcagcctgctctgctcgcagtcacagccatgcagcggcgtg 609
Query: 625 tcgctcatcgatgtcaacgtcgagtacgccggcaagaa 662
|||||||||||||| ||||| |||||||||||||||||
Sbjct: 610 tcgctcatcgatgtaaacgtggagtacgccggcaagaa 647
>gb|CW258561.1|CW258561 104_724_11227944_148_35167_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11227944, DNA
sequence
Length = 663
Score = 694 bits (350), Expect = 0.0
Identities = 566/638 (88%)
Strand = Plus / Plus
Query: 6 gaccaacggcactatttccggaattaaactactcaactccaaattcttccacatcaacat 65
||||||||||||| | || ||||| ||||||||||||||||| |||||||||||||| ||
Sbjct: 26 gaccaacggcactgtctctggaatcaaactactcaactccaagttcttccacatcaatat 85
Query: 66 cgacacttctaaggacatcaccgtgaaggatgtgaacatcacggcgcccgcggacgtcga 125
|||| |||| ||| ||||||| |||||||| ||||||||||| ||||| | |||||| ||
Sbjct: 86 cgacgcttcaaagaacatcacggtgaaggacgtgaacatcaccgcgcctggggacgttga 145
Query: 126 gaacacggacggcgtccatgtcggcgggtcctccaatgtacgcatcaccaactcgaccat 185
||||||||||||||||||||| || |||| |||| || ||||||||||||| |||||
Sbjct: 146 gaacacggacggcgtccatgttggaatgtccaccaaggtgagcatcaccaactcaaccat 205
Query: 186 tggcaccggcgacgactgcgtctccatcggccctgggagcgacggtgtcatggtgaacaa 245
||||| |||||||||||| |||| | ||||| ||||||||||| ||||||||||||||
Sbjct: 206 cggcactggcgacgactgcatctctgttggccccgggagcgacggcgtcatggtgaacaa 265
Query: 246 catcacctgtggccccgggcagggcatcagtgtgggctgcctaggccgctacaaggatga 305
||||| ||| |||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 266 catcatctgcggccccgggcagggcatcagcatcggctgcctaggccgctacaaggatga 325
Query: 306 gaaggacgtgagcgacgtgacggtgcgggattgcgtgcttaggaacaccaccaacggcgt 365
||||||||||| |||||||||||||||||| |||||||| | ||| ||||| ||||||||
Sbjct: 326 gaaggacgtgaccgacgtgacggtgcgggactgcgtgctcaagaagaccactaacggcgt 385
Query: 366 gcgcatcaagtcgtacgaggatgccgagtctgtgctcacggcgtcccatctcaccttcga 425
||||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||||||
Sbjct: 386 gcgcatcaagtcgtacgaggacgccgagtctgtgctgacggcgtcgcatctgaccttcga 445
Query: 426 gaacatcaggatggaggaggtggccaaccccatcatcatcgaccagtacttctgccccca 485
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 446 gaacatcaggatggaggaggtggcgaaccccatcatcatcgaccagtacttctgccccga 505
Query: 486 gaaggtctgccccggcaagcgaagcaactcctcgcatgtctccatcaaggacgtcacctt 545
|||||| |||||||||||| ||| ||||||| |||||| | ||||||||||||| ||
Sbjct: 506 gaaggtgtgccccggcaagaagagcgactcctctcatgtcatcgtcaaggacgtcacgtt 565
Query: 546 ccgcaacatctccggcacgtcgtccacgcccgaagccgtcagcctgctctgctccgagac 605
|||||||||| | ||||||||||||||||| | ||| |||||||||||||||| || |
Sbjct: 566 ccgcaacatcacgggcacgtcgtccacgccacaggccatcagcctgctctgctcgcagtc 625
Query: 606 gcagccgtgcagcggcgtctcgctcatcgatgtcaacg 643
||||| ||||||||||| |||||||||||||| ||||
Sbjct: 626 acagccatgcagcggcgtgtcgctcatcgatgtaaacg 663
>gb|CL187601.1|CL187601 104_403_10901000_114_32460_026 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10901000, DNA
sequence
Length = 752
Score = 672 bits (339), Expect = 0.0
Identities = 556/627 (88%), Gaps = 1/627 (0%)
Strand = Plus / Plus
Query: 6 gaccaacggcactatttccggaattaaactactcaactccaaattcttccacatcaacat 65
||||||||||||| | || ||||| ||||||||||||||||| |||||||||||||| ||
Sbjct: 127 gaccaacggcactgtctctggaatcaaactactcaactccaagttcttccacatcaatat 186
Query: 66 cgacacttctaaggacatcaccgtgaaggatgtgaacatcacggcgcccgcggacgtcga 125
|||| |||| ||| ||||||| |||||||| ||||||||||| ||||| | |||||| ||
Sbjct: 187 cgacgcttcaaagaacatcacggtgaaggacgtgaacatcaccgcgcctggggacgttga 246
Query: 126 gaacacggacggcgtccatgtcggcgggtcctccaatgtacgcatcaccaactcgaccat 185
||||||||||||||||||||| || |||| |||| || ||||||||||||| |||||
Sbjct: 247 gaacacggacggcgtccatgttggaatgtccaccaaggtgagcatcaccaactcaaccat 306
Query: 186 tggcaccggcgacgactgcgtctccatcggccctgggagcgacggtgtcatggtgaacaa 245
||||| |||||||||||| |||| | ||||| ||||||||||| ||||||||||||||
Sbjct: 307 cggcactggcgacgactgcatctctgttggccccgggagcgacggcgtcatggtgaacaa 366
Query: 246 catcacctgtggccccgggcagggcatcagtgtgggctgcctaggccgctacaaggatga 305
||||| ||| |||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 367 catcatctgcggccccgggcagggcatcagcatcggctgcctaggccgctacaaggatga 426
Query: 306 gaaggacgtgagcgacgtgacggtgcgggattgcgtgcttaggaacaccaccaacggcgt 365
||||||||||| |||||||||||||||||| |||||||| | ||| ||||| ||||||||
Sbjct: 427 gaaggacgtgaccgacgtgacggtgcgggactgcgtgctcaagaagaccactaacggcgt 486
Query: 366 gcgcatcaagtcgtacgaggatgccgagtctgtgctcacggcgtcccatctcaccttcga 425
||||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||||||
Sbjct: 487 gcgcatcaagtcgtacgaggacgccgagtctgtgctgacggcgtcgcatctgaccttcga 546
Query: 426 gaacatcaggatggaggaggtggccaaccccatcatcatcgaccagtacttctgccccca 485
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 547 gaacatcaggatggaggaggtggcgaaccccatcatcatcgaccagtacttctgccccga 606
Query: 486 gaaggtctgccccggcaagcgaagcaactcctcgcatgtctccatcaaggacgtcacctt 545
|||||| |||||||||||| ||| ||||||| |||||| | ||||||||||||| ||
Sbjct: 607 gaaggtgtgccccggcaagaagagcgactcctctcatgtcatcgtcaaggacgtcacgtt 666
Query: 546 ccgcaacatctccggcacgtcgtccacgcccgaagccgtcagcctgctctgctccgagac 605
|||||||||| | |||||||||||||||| | | ||| |||||||||||||||| || |
Sbjct: 667 ccgcaacatcacgggcacgtcgtccacgcac-aggccatcagcctgctctgctcgcagtc 725
Query: 606 gcagccgtgcagcggcgtctcgctcat 632
||||| ||||||||||| ||||||||
Sbjct: 726 acagccatgcagcggcgtgtcgctcat 752
>gb|CW406843.1|CW406843 fsbb001f100a22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f100a22, DNA
sequence
Length = 532
Score = 630 bits (318), Expect = e-179
Identities = 465/514 (90%)
Strand = Plus / Minus
Query: 214 ggccctgggagcgacggtgtcatggtgaacaacatcacctgtggccccgggcagggcatc 273
||||| ||||||||||| |||||||||| |||||||| ||| ||||||||||||||||||
Sbjct: 522 ggccccgggagcgacggcgtcatggtgaccaacatcatctgcggccccgggcagggcatc 463
Query: 274 agtgtgggctgcctaggccgctacaaggatgagaaggacgtgagcgacgtgacggtgcgg 333
|| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 462 agcatcggctgcctaggccgctacaaggatgagaaggacgtgaccgacgtgacggtgcgg 403
Query: 334 gattgcgtgcttaggaacaccaccaacggcgtgcgcatcaagtcgtacgaggatgccgag 393
|| |||||||| | ||| ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 402 gactgcgtgctcaagaagaccactaacggcgtgcgcatcaagtcgtacgaggacgccgag 343
Query: 394 tctgtgctcacggcgtcccatctcaccttcgagaacatcaggatggaggaggtggccaac 453
|||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 342 tctgtgctgacggcgtcgcatctgaccttcgagaacatcaggatggaggaggtggcgaac 283
Query: 454 cccatcatcatcgaccagtacttctgcccccagaaggtctgccccggcaagcgaagcaac 513
|||||||||||||||||||||||||||||| ||||||| |||||||||||| ||| ||
Sbjct: 282 cccatcatcatcgaccagtacttctgccccgagaaggtgtgccccggcaagaagagcgac 223
Query: 514 tcctcgcatgtctccatcaaggacgtcaccttccgcaacatctccggcacgtcgtccacg 573
||||| |||||| | ||||||||||||| |||||||||||| | |||||||||||||||
Sbjct: 222 tcctctcatgtcatcgtcaaggacgtcacgttccgcaacatcacgggcacgtcgtccacg 163
Query: 574 cccgaagccgtcagcctgctctgctccgagacgcagccgtgcagcggcgtctcgctcatc 633
|| | ||| |||||||||||||||| || | ||||| ||||||||||| |||||||||
Sbjct: 162 ccacaggccatcagcctgctctgctcgcagtcacagccatgcagcggcgtgtcgctcatc 103
Query: 634 gatgtcaacgtcgagtacgccggcaagaacaacaagaccatggctgtgtgcagcaacgcc 693
||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 102 gatgtaaacgtggagtacgccggcaagaacaacaagaccatggccgtgtgcagcaacgcc 43
Query: 694 aagggaaccgccaagggaagcctccaggccctgg 727
||||| ||||||||||| ||| || |||||||||
Sbjct: 42 aagggcaccgccaagggcagcgtcgaggccctgg 9
>gb|BG739374.1|BG739374 EM1_82_B09.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 643
Score = 519 bits (262), Expect = e-145
Identities = 409/458 (89%)
Strand = Plus / Plus
Query: 309 ggacgtgagcgacgtgacggtgcgggattgcgtgcttaggaacaccaccaacggcgtgcg 368
|||||||| |||||||||||||||||| |||||||| | ||| ||||| |||||||||||
Sbjct: 1 ggacgtgaccgacgtgacggtgcgggactgcgtgctcaagaagaccactaacggcgtgcg 60
Query: 369 catcaagtcgtacgaggatgccgagtctgtgctcacggcgtcccatctcaccttcgagaa 428
|||||||||||||||||| |||||||||||||| |||||||| ||||| |||||||||||
Sbjct: 61 catcaagtcgtacgaggacgccgagtctgtgctgacggcgtcgcatctgaccttcgagaa 120
Query: 429 catcaggatggaggaggtggccaaccccatcatcatcgaccagtacttctgcccccagaa 488
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 121 catcaggatggaggaggtggcgaaccccatcatcatcgaccagtacttctgccccgagaa 180
Query: 489 ggtctgccccggcaagcgaagcaactcctcgcatgtctccatcaaggacgtcaccttccg 548
||| |||||||||||| ||| ||||||| |||||| | ||||||||||||| |||||
Sbjct: 181 ggtgtgccccggcaagaagagcgactcctctcatgtcatcgtcaaggacgtcacgttccg 240
Query: 549 caacatctccggcacgtcgtccacgcccgaagccgtcagcctgctctgctccgagacgca 608
||||||| | ||||||||||||||||| | ||| |||||||||||||||| || | ||
Sbjct: 241 caacatcacgggcacgtcgtccacgccacaggccatcagcctgctctgctcgcagtcaca 300
Query: 609 gccgtgcagcggcgtctcgctcatcgatgtcaacgtcgagtacgccggcaagaacaacaa 668
||| ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 301 gccatgcagcggcgtgtcgctcatcgatgtaaacgtggagtacgccggcaagaacaacaa 360
Query: 669 gaccatggctgtgtgcagcaacgccaagggaaccgccaagggaagcctccaggccctgga 728
||||||||| |||||||||||||||||||| ||||||||||| ||| || |||||||||
Sbjct: 361 gaccatggccgtgtgcagcaacgccaagggcaccgccaagggcagcgtcgaggccctggc 420
Query: 729 ttgcctcgtctgatcgatgaccttgcatttgcatgcat 766
||||| | |||| |||||| | ||||| |||||||||
Sbjct: 421 atgcctggcctgagcgatgagcatgcatctgcatgcat 458
>gb|CW043621.1|CW043621 104_279_10508479_114_30273 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10508479, DNA
sequence
Length = 525
Score = 474 bits (239), Expect = e-132
Identities = 380/427 (88%)
Strand = Plus / Plus
Query: 6 gaccaacggcactatttccggaattaaactactcaactccaaattcttccacatcaacat 65
||||||||||||| | || ||||| ||||||||||||||||| |||||||||||||| ||
Sbjct: 99 gaccaacggcactgtctctggaatcaaactactcaactccaagttcttccacatcaatat 158
Query: 66 cgacacttctaaggacatcaccgtgaaggatgtgaacatcacggcgcccgcggacgtcga 125
|||| |||| ||| ||||||| |||||||| ||||||||||| ||||| | |||||| ||
Sbjct: 159 cgacgcttcaaagaacatcacggtgaaggacgtgaacatcaccgcgcctggggacgttga 218
Query: 126 gaacacggacggcgtccatgtcggcgggtcctccaatgtacgcatcaccaactcgaccat 185
||||||||||||||||||||| || |||| |||| || ||||||||||||| |||||
Sbjct: 219 gaacacggacggcgtccatgttggaatgtccaccaaggtgagcatcaccaactcaaccat 278
Query: 186 tggcaccggcgacgactgcgtctccatcggccctgggagcgacggtgtcatggtgaacaa 245
||||| |||||||||||| |||| | ||||| ||||||||||| ||||||||||||||
Sbjct: 279 cggcactggcgacgactgcatctctgttggccccgggagcgacggcgtcatggtgaacaa 338
Query: 246 catcacctgtggccccgggcagggcatcagtgtgggctgcctaggccgctacaaggatga 305
||||| ||| |||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 339 catcatctgcggccccgggcagggcatcagcatcggctgcctaggccgctacaaggatga 398
Query: 306 gaaggacgtgagcgacgtgacggtgcgggattgcgtgcttaggaacaccaccaacggcgt 365
||||||||||| |||||||||||||||||| |||||||| | ||| ||||| ||||||||
Sbjct: 399 gaaggacgtgaccgacgtgacggtgcgggactgcgtgctcaagaagaccactaacggcgt 458
Query: 366 gcgcatcaagtcgtacgaggatgccgagtctgtgctcacggcgtcccatctcaccttcga 425
||||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||||||
Sbjct: 459 gcgcatcaagtcgtacgaggacgccgagtctgtgctgacggcgtcgcatctgaccttcga 518
Query: 426 gaacatc 432
|||||||
Sbjct: 519 gaacatc 525
>gb|CW333142.1|CW333142 104_831_11481784_116_36045_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481784, DNA
sequence
Length = 647
Score = 460 bits (232), Expect = e-127
Identities = 363/407 (89%)
Strand = Plus / Minus
Query: 360 cggcgtgcgcatcaagtcgtacgaggatgccgagtctgtgctcacggcgtcccatctcac 419
||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| ||
Sbjct: 647 cggcgtgcgcatcaagtcgtacgaggacgccgagtctgtgctgacggcgtcgcatctgac 588
Query: 420 cttcgagaacatcaggatggaggaggtggccaaccccatcatcatcgaccagtacttctg 479
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 587 nttcgagaacatcaggatggaggaggtggcgaaccccatcatcatcgaccagtacttctg 528
Query: 480 cccccagaaggtctgccccggcaagcgaagcaactcctcgcatgtctccatcaaggacgt 539
|||| ||||||| |||||||||||| ||| ||||||| |||||| | ||||||||||
Sbjct: 527 ccccgagaaggtgtgccccggcaagaagagcgactcctctcatgtcatcgtcaaggacgt 468
Query: 540 caccttccgcaacatctccggcacgtcgtccacgcccgaagccgtcagcctgctctgctc 599
||| |||||||||||| | ||||||||||||||||| | ||| ||||||||||||||||
Sbjct: 467 cacgttccgcaacatcacgggcacgtcgtccacgccacaggccatcagcctgctctgctc 408
Query: 600 cgagacgcagccgtgcagcggcgtctcgctcatcgatgtcaacgtcgagtacgccggcaa 659
|| | ||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 407 gcagtcacagccatgcagcggcgtgtcgctcatcgatgtaaacgtggagtacgccggcaa 348
Query: 660 gaacaacaagaccatggctgtgtgcagcaacgccaagggaaccgccaagggaagcctcca 719
|||||||||||||||||| |||||||||||||||||||| ||||||||||| ||| || |
Sbjct: 347 gaacaacaagaccatggccgtgtgcagcaacgccaagggcaccgccaagggcagcgtcga 288
Query: 720 ggccctggattgcctcgtctgatcgatgaccttgcatttgcatgcat 766
|||||||| ||||| | |||| |||||| | ||||| |||||||||
Sbjct: 287 ggccctggcatgcctggcctgagcgatgagcatgcatctgcatgcat 241
>gb|CW494638.1|CW494638 fsbb001f286a15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f286a15, DNA
sequence
Length = 688
Score = 369 bits (186), Expect = e-100
Identities = 315/358 (87%)
Strand = Plus / Minus
Query: 6 gaccaacggcactatttccggaattaaactactcaactccaaattcttccacatcaacat 65
||||||||||||| | || ||||| ||||||||||||||||| |||||||||||||| ||
Sbjct: 358 gaccaacggcactgtctctggaatcaaactactcaactccaagttcttccacatcaatat 299
Query: 66 cgacacttctaaggacatcaccgtgaaggatgtgaacatcacggcgcccgcggacgtcga 125
|||| |||| ||| ||||||| |||||||| ||||||||||| ||||| | |||||| ||
Sbjct: 298 cgacgcttcaaagaacatcacggtgaaggacgtgaacatcaccgcgcctggggacgttga 239
Query: 126 gaacacggacggcgtccatgtcggcgggtcctccaatgtacgcatcaccaactcgaccat 185
||||||||||||||||||||| || |||| |||| || ||||||||||||| |||||
Sbjct: 238 gaacacggacggcgtccatgttggaatgtccaccaaggtgagcatcaccaactcaaccat 179
Query: 186 tggcaccggcgacgactgcgtctccatcggccctgggagcgacggtgtcatggtgaacaa 245
||||| |||||||||||| |||| | ||||| ||||||||||| ||||||||||||||
Sbjct: 178 cggcactggcgacgactgcatctctgttggccccgggagcgacggcgtcatggtgaacaa 119
Query: 246 catcacctgtggccccgggcagggcatcagtgtgggctgcctaggccgctacaaggatga 305
||||| ||| |||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 118 catcatctgcggccccgggcagggcatcagcatcggctgcctaggccgctacaaggatga 59
Query: 306 gaaggacgtgagcgacgtgacggtgcgggattgcgtgcttaggaacaccaccaacggc 363
||||||||||| |||||||||||||||||| |||||||| | ||| ||||| ||||||
Sbjct: 58 gaaggacgtgaccgacgtgacggtgcgggactgcgtgctcaagaagaccactaacggc 1
>gb|BG357591.1|BG357591 OV2_31_G11.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 308
Score = 198 bits (100), Expect = 6e-049
Identities = 175/200 (87%)
Strand = Plus / Plus
Query: 567 gtccacgcccgaagccgtcagcctgctctgctccgagacgcagccgtgcagcggcgtctc 626
||||||||| | ||| ||||| |||||||||| || | ||||| ||||||||||| ||
Sbjct: 1 gtccacgccacaggccatcagcatgctctgctcgcagtcacagccatgcagcggcgtgtc 60
Query: 627 gctcatcgatgtcaacgtcgagtacgccggcaagaacaacaagaccatggctgtgtgcag 686
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctcatcgatgtaaacgtggagtacgccggcaagaacaacaagaccatggctgtgtgcag 120
Query: 687 caacgccaagggaaccgccaagggaagcctccaggccctggattgcctcgtctgatcgat 746
|||||||||||| ||||||||||| ||| || ||||||||| ||||| | |||| ||||
Sbjct: 121 caacgccaagggcaccgccaagggcagcgtcgaggccctggcatgcctggcctgagcgat 180
Query: 747 gaccttgcatttgcatgcat 766
|| | ||||| |||||||||
Sbjct: 181 gagcatgcatctgcatgcat 200
>gb|CF483069.1|CF483069 POL1_11_C05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_11_C05_A002 3', mRNA sequence
Length = 525
Score = 182 bits (92), Expect = 4e-044
Identities = 143/160 (89%)
Strand = Plus / Plus
Query: 607 cagccgtgcagcggcgtctcgctcatcgatgtcaacgtcgagtacgccggcaagaacaac 666
||||| ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 7 cagccatgcagcggcgtgtcgctcatcgatgtaaacgtggagtacgccggcaagaacaac 66
Query: 667 aagaccatggctgtgtgcagcaacgccaagggaaccgccaagggaagcctccaggccctg 726
||||||||||| |||||||||||||||||||| ||||||||||| ||| || ||||||||
Sbjct: 67 aagaccatggccgtgtgcagcaacgccaagggcaccgccaagggcagcgtcgaggccctg 126
Query: 727 gattgcctcgtctgatcgatgaccttgcatttgcatgcat 766
| ||||| | |||| |||||| | ||||| |||||||||
Sbjct: 127 gcatgcctggcctgagcgatgagcatgcatctgcatgcat 166
>gb|BG239969.1|BG239969 OV1_31_D01.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 473
Score = 180 bits (91), Expect = 2e-043
Identities = 142/159 (89%)
Strand = Plus / Plus
Query: 608 agccgtgcagcggcgtctcgctcatcgatgtcaacgtcgagtacgccggcaagaacaaca 667
|||| ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 1 agccatgcagcggcgtgtcgctcatcgatgtaaacgtggagtacgccggcaagaacaaca 60
Query: 668 agaccatggctgtgtgcagcaacgccaagggaaccgccaagggaagcctccaggccctgg 727
|||||||||| |||||||||||||||||||| ||||||||||| ||| || |||||||||
Sbjct: 61 agaccatggccgtgtgcagcaacgccaagggcaccgccaagggcagcgtcgaggccctgg 120
Query: 728 attgcctcgtctgatcgatgaccttgcatttgcatgcat 766
||||| | |||| |||||| | ||||| |||||||||
Sbjct: 121 catgcctggcctgagcgatgagcatgcatctgcatgcat 159
>gb|CW270778.1|CW270778 104_742_11402626_148_35337_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11402626, DNA
sequence
Length = 671
Score = 67.9 bits (34), Expect = 2e-009
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 530 tcaaggacgtcaccttccgcaacatctccggcacgtcgtccacgcccgaagccgtcagcc 589
||||||||||||| ||| |||||| ||||||| || ||||| || |||||||||||||
Sbjct: 602 tcaaggacgtcacgttcaagaacatcaccggcacctcatccaccccggaagccgtcagcc 661
Query: 590 tgctctgctc 599
||||||||||
Sbjct: 662 tgctctgctc 671
Score = 50.1 bits (25), Expect = 4e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 436 atggaggaggtggccaaccccatcatcatcgac 468
||||| || ||||||||||||||||||||||||
Sbjct: 514 atggacgacgtggccaaccccatcatcatcgac 546
Score = 50.1 bits (25), Expect = 4e-004
Identities = 97/121 (80%)
Strand = Plus / Plus
Query: 196 gacgactgcgtctccatcggccctgggagcgacggtgtcatggtgaacaacatcacctgt 255
||||||||| |||||||||||||||| ||| ||| ||| || | | | |||||||
Sbjct: 274 gacgactgcatctccatcggccctggcagcaccgggatcaacgtcaccggcgtcacctgc 333
Query: 256 ggccccgggcagggcatcagtgtgggctgcctaggccgctacaaggatgagaaggacgtg 315
|| ||||| || |||||||| || ||| |||| ||| | ||||||||||||||||| |||
Sbjct: 334 gggcccggccacggcatcagcgtcggcagcctgggcaggtacaaggatgagaaggatgtg 393
Query: 316 a 316
|
Sbjct: 394 a 394
>gb|BH246023.1|BH246023 pSB1633.1 S. bicolor BTx623 PstI-digested total genomic DNA library
Sorghum bicolor genomic clone pSB1633 similar to PG gene
for polygalacturonase (X66422), DNA sequence
Length = 479
Score = 65.9 bits (33), Expect = 6e-009
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 530 tcaaggacgtcaccttccgcaacatctccggcacgtcgtccacgcccgaagccgtcagcc 589
||||||||||||| ||| |||||| ||||||| || ||||| || || ||||||||||
Sbjct: 88 tcaaggacgtcacgttcaagaacatcaccggcacctcatccaccccggaggccgtcagcc 29
Query: 590 tgctctgctccga 602
|||||||||||||
Sbjct: 28 tgctctgctccga 16
Score = 50.1 bits (25), Expect = 4e-004
Identities = 97/121 (80%)
Strand = Plus / Minus
Query: 196 gacgactgcgtctccatcggccctgggagcgacggtgtcatggtgaacaacatcacctgt 255
||||||||| |||||||||||||||| ||| ||| ||| || | | | |||||||
Sbjct: 416 gacgactgcatctccatcggccctggcagcaccgggatcaacgtcaccggcgtcacctgc 357
Query: 256 ggccccgggcagggcatcagtgtgggctgcctaggccgctacaaggatgagaaggacgtg 315
|| ||||| || |||||||| || ||| |||| ||| | ||||||||||||||||| |||
Sbjct: 356 gggcccggccacggcatcagcgtcggcagcctgggcaggtacaaggatgagaaggatgtg 297
Query: 316 a 316
|
Sbjct: 296 a 296
Score = 50.1 bits (25), Expect = 4e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 436 atggaggaggtggccaaccccatcatcatcgac 468
||||| || ||||||||||||||||||||||||
Sbjct: 176 atggacgacgtggccaaccccatcatcatcgac 144
>gb|BZ422208.1|BZ422208 id51a01.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone id51a01 5', DNA sequence
Length = 554
Score = 65.9 bits (33), Expect = 6e-009
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 530 tcaaggacgtcaccttccgcaacatctccggcacgtcgtccacgcccgaagccgtcagcc 589
||||||||||||| ||| |||||| ||||||| || ||||| || || ||||||||||
Sbjct: 482 tcaaggacgtcacgttcaagaacatcaccggcacctcatccaccccggaggccgtcagcc 423
Query: 590 tgctctgctccga 602
|||||||||||||
Sbjct: 422 tgctctgctccga 410
>gb|CL196999.1|CL196999 104_423_10943444_114_32326_070 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943444, DNA
sequence
Length = 699
Score = 65.9 bits (33), Expect = 6e-009
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 530 tcaaggacgtcaccttccgcaacatctccggcacgtcgtccacgcccgaagccgtcagcc 589
||||||||||||| ||| |||||| ||||||| || ||||| || || ||||||||||
Sbjct: 599 tcaaggacgtcacgttcaagaacatcaccggcacctcatccaccccggaggccgtcagcc 658
Query: 590 tgctctgctccga 602
|||||||||||||
Sbjct: 659 tgctctgctccga 671
Score = 50.1 bits (25), Expect = 4e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 436 atggaggaggtggccaaccccatcatcatcgac 468
||||| || ||||||||||||||||||||||||
Sbjct: 511 atggacgacgtggccaaccccatcatcatcgac 543
Score = 50.1 bits (25), Expect = 4e-004
Identities = 97/121 (80%)
Strand = Plus / Plus
Query: 196 gacgactgcgtctccatcggccctgggagcgacggtgtcatggtgaacaacatcacctgt 255
||||||||| |||||||||||||||| ||| ||| ||| || | | | |||||||
Sbjct: 271 gacgactgcatctccatcggccctggcagcaccgggatcaacgtcaccggcgtcacctgc 330
Query: 256 ggccccgggcagggcatcagtgtgggctgcctaggccgctacaaggatgagaaggacgtg 315
|| ||||| || |||||||| || ||| |||| ||| | ||||||||||||||||| |||
Sbjct: 331 gggcccggccacggcatcagcgtcggcagcctgggcaggtacaaggatgagaaggatgtg 390
Query: 316 a 316
|
Sbjct: 391 a 391
>gb|CL197000.1|CL197000 104_423_10943444_116_32330_070 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943444, DNA
sequence
Length = 704
Score = 65.9 bits (33), Expect = 6e-009
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 530 tcaaggacgtcaccttccgcaacatctccggcacgtcgtccacgcccgaagccgtcagcc 589
||||||||||||| ||| |||||| ||||||| || ||||| || || ||||||||||
Sbjct: 510 tcaaggacgtcacgttcaagaacatcaccggcacctcatccaccccggaggccgtcagcc 451
Query: 590 tgctctgctccga 602
|||||||||||||
Sbjct: 450 tgctctgctccga 438
Score = 50.1 bits (25), Expect = 4e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 436 atggaggaggtggccaaccccatcatcatcgac 468
||||| || ||||||||||||||||||||||||
Sbjct: 598 atggacgacgtggccaaccccatcatcatcgac 566
>gb|BG322873.1|BG322873 EM1_15_B11.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 580
Score = 65.9 bits (33), Expect = 6e-009
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 530 tcaaggacgtcaccttccgcaacatctccggcacgtcgtccacgcccgaagccgtcagcc 589
||||||||||||| ||| |||||| ||||||| || ||||| || || ||||||||||
Sbjct: 443 tcaaggacgtcacgttcaagaacatcaccggcacctcatccaccccggaggccgtcagcc 502
Query: 590 tgctctgctccga 602
|||||||||||||
Sbjct: 503 tgctctgctccga 515
Score = 50.1 bits (25), Expect = 4e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 436 atggaggaggtggccaaccccatcatcatcgac 468
||||| || ||||||||||||||||||||||||
Sbjct: 355 atggacgacgtggccaaccccatcatcatcgac 387
Score = 50.1 bits (25), Expect = 4e-004
Identities = 97/121 (80%)
Strand = Plus / Plus
Query: 196 gacgactgcgtctccatcggccctgggagcgacggtgtcatggtgaacaacatcacctgt 255
||||||||| |||||||||||||||| ||| ||| ||| || | | | |||||||
Sbjct: 115 gacgactgcatctccatcggccctggcagcaccgggatcaacgtcaccggcgtcacctgc 174
Query: 256 ggccccgggcagggcatcagtgtgggctgcctaggccgctacaaggatgagaaggacgtg 315
|| ||||| || |||||||| || ||| |||| ||| | ||||||||||||||||| |||
Sbjct: 175 gggcccggccacggcatcagcgtcggcagcctgggcaggtacaaggatgagaaggatgtg 234
Query: 316 a 316
|
Sbjct: 235 a 235
>gb|BG323126.1|BG323126 EM1_15_B11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 622
Score = 65.9 bits (33), Expect = 6e-009
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 530 tcaaggacgtcaccttccgcaacatctccggcacgtcgtccacgcccgaagccgtcagcc 589
||||||||||||| ||| |||||| ||||||| || ||||| || || ||||||||||
Sbjct: 76 tcaaggacgtcacgttcaagaacatcaccggcacctcatccaccccggaggccgtcagcc 135
Query: 590 tgctctgctccga 602
|||||||||||||
Sbjct: 136 tgctctgctccga 148
Score = 40.1 bits (20), Expect = 0.35
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 449 ccaaccccatcatcatcgac 468
||||||||||||||||||||
Sbjct: 1 ccaaccccatcatcatcgac 20
>gb|BG355410.1|BG355410 EM1_16_B04.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 522
Score = 65.9 bits (33), Expect = 6e-009
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 530 tcaaggacgtcaccttccgcaacatctccggcacgtcgtccacgcccgaagccgtcagcc 589
||||||||||||| ||| |||||| ||||||| || ||||| || | |||||||||||
Sbjct: 443 tcaaggacgtcacgttcaagaacatcaccggcacctcatccaccccgggagccgtcagcc 502
Query: 590 tgctctgctccga 602
|||||||||||||
Sbjct: 503 tgctctgctccga 515
Score = 50.1 bits (25), Expect = 4e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 436 atggaggaggtggccaaccccatcatcatcgac 468
||||| || ||||||||||||||||||||||||
Sbjct: 355 atggacgacgtggccaaccccatcatcatcgac 387
Score = 50.1 bits (25), Expect = 4e-004
Identities = 97/121 (80%)
Strand = Plus / Plus
Query: 196 gacgactgcgtctccatcggccctgggagcgacggtgtcatggtgaacaacatcacctgt 255
||||||||| |||||||||||||||| ||| ||| ||| || | | | |||||||
Sbjct: 115 gacgactgcatctccatcggccctggcagcaccgggatcaacgtcaccggcgtcacctgc 174
Query: 256 ggccccgggcagggcatcagtgtgggctgcctaggccgctacaaggatgagaaggacgtg 315
|| ||||| || |||||||| || ||| |||| ||| | ||||||||||||||||| |||
Sbjct: 175 gggcccggccacggcatcagcgtcggcagcctgggcaggtacaaggatgagaaggatgtg 234
Query: 316 a 316
|
Sbjct: 235 a 235
>gb|CW182308.1|CW182308 104_597_11164002_116_36658_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11164002, DNA
sequence
Length = 608
Score = 63.9 bits (32), Expect = 2e-008
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 351 caccaccaacggcgtgcgcatcaagtcgtacgagga 386
||||||||||||| ||||||||||||||||||||||
Sbjct: 304 caccaccaacggcctgcgcatcaagtcgtacgagga 339
Score = 40.1 bits (20), Expect = 0.35
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 192 cggcgacgactgcgtctccatcgg 215
||||||||||||| ||||||||||
Sbjct: 145 cggcgacgactgcatctccatcgg 168
>gb|CW330183.1|CW330183 104_827_11480239_116_36007_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480239, DNA
sequence
Length = 728
Score = 63.9 bits (32), Expect = 2e-008
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 351 caccaccaacggcgtgcgcatcaagtcgtacgagga 386
||||||||||||| ||||||||||||||||||||||
Sbjct: 473 caccaccaacggcctgcgcatcaagtcgtacgagga 438
Score = 40.1 bits (20), Expect = 0.35
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 192 cggcgacgactgcgtctccatcgg 215
||||||||||||| ||||||||||
Sbjct: 632 cggcgacgactgcatctccatcgg 609
>gb|CW330184.1|CW330184 104_827_11480239_148_36008_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480239, DNA
sequence
Length = 729
Score = 63.9 bits (32), Expect = 2e-008
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 351 caccaccaacggcgtgcgcatcaagtcgtacgagga 386
||||||||||||| ||||||||||||||||||||||
Sbjct: 304 caccaccaacggcctgcgcatcaagtcgtacgagga 339
Score = 40.1 bits (20), Expect = 0.35
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 192 cggcgacgactgcgtctccatcgg 215
||||||||||||| ||||||||||
Sbjct: 145 cggcgacgactgcatctccatcgg 168
>gb|CW032166.1|CW032166 104_261_10501225_114_30363 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10501225, DNA
sequence
Length = 510
Score = 56.0 bits (28), Expect = 6e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 187 ggcaccggcgacgactgcgtctccatcggccc 218
|||||||||||||||||||||||| |||||||
Sbjct: 373 ggcaccggcgacgactgcgtctccgtcggccc 404
Score = 40.1 bits (20), Expect = 0.35
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 127 aacacggacggcgtccatgtcggc 150
||||||||||||||||| ||||||
Sbjct: 313 aacacggacggcgtccacgtcggc 336
>gb|CW086368.1|CW086368 104_430_10946932_116_33018_012 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10946932, DNA
sequence
Length = 514
Score = 56.0 bits (28), Expect = 6e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 450 caaccccatcatcatcgaccagtacttctgcc 481
|||||||||||||||||||||||||| |||||
Sbjct: 136 caaccccatcatcatcgaccagtactactgcc 105
Score = 50.1 bits (25), Expect = 4e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 192 cggcgacgactgcgtctccatcggc 216
|||||||||||||||||||||||||
Sbjct: 391 cggcgacgactgcgtctccatcggc 367
>gb|CW133225.1|CW133225 104_516_11116645_116_34806_049 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11116645, DNA
sequence
Length = 641
Score = 56.0 bits (28), Expect = 6e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 169 atcaccaactcgaccattggcaccggcgacgactgcgtctccat 212
|||||||| || ||||| ||||| ||||||||||||||||||||
Sbjct: 209 atcaccaattctaccatcggcacgggcgacgactgcgtctccat 252
>gb|CW264408.1|CW264408 104_733_11231276_116_35256_078 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11231276, DNA
sequence
Length = 722
Score = 56.0 bits (28), Expect = 6e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 187 ggcaccggcgacgactgcgtctccatcggccc 218
|||||||||||||||||||||||| |||||||
Sbjct: 340 ggcaccggcgacgactgcgtctccgtcggccc 309
Score = 42.1 bits (21), Expect = 0.090
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 351 caccaccaacggcgtgcgcatcaag 375
|||||||||||| ||||||||||||
Sbjct: 29 caccaccaacggtgtgcgcatcaag 5
Score = 40.1 bits (20), Expect = 0.35
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 127 aacacggacggcgtccatgtcggc 150
||||||||||||||||| ||||||
Sbjct: 400 aacacggacggcgtccacgtcggc 377
>gb|CW320260.1|CW320260 104_813_11474922_116_35901_077 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11474922, DNA
sequence
Length = 653
Score = 56.0 bits (28), Expect = 6e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 450 caaccccatcatcatcgaccagtacttctgcc 481
|||||||||||||||||||||||||| |||||
Sbjct: 449 caaccccatcatcatcgaccagtactactgcc 480
Score = 50.1 bits (25), Expect = 4e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 192 cggcgacgactgcgtctccatcggc 216
|||||||||||||||||||||||||
Sbjct: 194 cggcgacgactgcgtctccatcggc 218
>gb|CW320261.1|CW320261 104_813_11474922_148_35897_077 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11474922, DNA
sequence
Length = 692
Score = 56.0 bits (28), Expect = 6e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 450 caaccccatcatcatcgaccagtacttctgcc 481
|||||||||||||||||||||||||| |||||
Sbjct: 365 caaccccatcatcatcgaccagtactactgcc 334
Score = 50.1 bits (25), Expect = 4e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 192 cggcgacgactgcgtctccatcggc 216
|||||||||||||||||||||||||
Sbjct: 620 cggcgacgactgcgtctccatcggc 596
>gb|CW369157.1|CW369157 fsbb001f043h04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f043h04, DNA
sequence
Length = 586
Score = 56.0 bits (28), Expect = 6e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 450 caaccccatcatcatcgaccagtacttctgcc 481
|||||||||||||||||||||||||| |||||
Sbjct: 576 caaccccatcatcatcgaccagtactactgcc 545
>gb|CW394746.1|CW394746 fsbb001f082h21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f082h21, DNA
sequence
Length = 516
Score = 56.0 bits (28), Expect = 6e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 187 ggcaccggcgacgactgcgtctccatcggccc 218
|||||||||||||||||||||||| |||||||
Sbjct: 225 ggcaccggcgacgactgcgtctccgtcggccc 194
Score = 40.1 bits (20), Expect = 0.35
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 127 aacacggacggcgtccatgtcggc 150
||||||||||||||||| ||||||
Sbjct: 285 aacacggacggcgtccacgtcggc 262
>gb|CW412966.1|CW412966 fsbb001f108o03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f108o03, DNA
sequence
Length = 529
Score = 56.0 bits (28), Expect = 6e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 187 ggcaccggcgacgactgcgtctccatcggccc 218
|||||||||||||||||||||||| |||||||
Sbjct: 525 ggcaccggcgacgactgcgtctccgtcggccc 494
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 448 gccaaccccatcatcatcgaccag 471
||||||||||||||||||||||||
Sbjct: 120 gccaaccccatcatcatcgaccag 97
Score = 42.1 bits (21), Expect = 0.090
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 351 caccaccaacggcgtgcgcatcaag 375
|||||||||||| ||||||||||||
Sbjct: 214 caccaccaacggtgtgcgcatcaag 190
>gb|BF587798.1|BF587798 FM1_40_F09.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 644
Score = 56.0 bits (28), Expect = 6e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 450 caaccccatcatcatcgaccagtacttctgcc 481
|||||||||||||||||||||||||| |||||
Sbjct: 184 caaccccatcatcatcgaccagtactactgcc 215
>gb|BZ422085.1|BZ422085 id49d07.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone id49d07 5', DNA sequence
Length = 624
Score = 52.0 bits (26), Expect = 9e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 189 caccggcgacgactgcgtctccatcggccc 218
|||||||||||||||||||||| |||||||
Sbjct: 195 caccggcgacgactgcgtctccgtcggccc 224
Score = 44.1 bits (22), Expect = 0.023
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 450 caaccccatcatcatcgaccag 471
||||||||||||||||||||||
Sbjct: 456 caaccccatcatcatcgaccag 477
Score = 42.1 bits (21), Expect = 0.090
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 351 caccaccaacggcgtgcgcatcaag 375
|||| ||||||||||||||||||||
Sbjct: 357 cacctccaacggcgtgcgcatcaag 381
>gb|CW067644.1|CW067644 104_315_10524410_115_30125 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10524410, DNA
sequence
Length = 364
Score = 52.0 bits (26), Expect = 9e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 450 caaccccatcatcatcgaccagtacttctgcccc 483
|||||||||||||||||||||| ||| |||||||
Sbjct: 195 caaccccatcatcatcgaccagaactactgcccc 228
>gb|CW097817.1|CW097817 104_464_11002670_148_34365_061 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11002670, DNA
sequence
Length = 668
Score = 52.0 bits (26), Expect = 9e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 189 caccggcgacgactgcgtctccatcggccc 218
|||||||||||||||||||||| |||||||
Sbjct: 224 caccggcgacgactgcgtctccgtcggccc 253
Score = 44.1 bits (22), Expect = 0.023
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 450 caaccccatcatcatcgaccag 471
||||||||||||||||||||||
Sbjct: 485 caaccccatcatcatcgaccag 506
Score = 42.1 bits (21), Expect = 0.090
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 351 caccaccaacggcgtgcgcatcaag 375
|||| ||||||||||||||||||||
Sbjct: 386 cacctccaacggcgtgcgcatcaag 410
>gb|CW179407.1|CW179407 104_593_11160083_148_36629_040 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11160083, DNA
sequence
Length = 749
Score = 52.0 bits (26), Expect = 9e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 450 caaccccatcatcatcgaccagtacttctgcccc 483
|||||||||||||||||||||| ||| |||||||
Sbjct: 177 caaccccatcatcatcgaccagaactactgcccc 210
>gb|CW233308.1|CW233308 104_686_11213332_116_37372_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11213332, DNA
sequence
Length = 666
Score = 52.0 bits (26), Expect = 9e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 450 caaccccatcatcatcgaccagtacttctgcccc 483
|||||||||||||||||||||| ||| |||||||
Sbjct: 331 caaccccatcatcatcgaccagaactactgcccc 298
>gb|CW245686.1|CW245686 104_706_11221077_148_35074_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221077, DNA
sequence
Length = 666
Score = 52.0 bits (26), Expect = 9e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 189 caccggcgacgactgcgtctccatcggccc 218
|||||||||||||||||||||| |||||||
Sbjct: 271 caccggcgacgactgcgtctccgtcggccc 300
Score = 44.1 bits (22), Expect = 0.023
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 450 caaccccatcatcatcgaccag 471
||||||||||||||||||||||
Sbjct: 532 caaccccatcatcatcgaccag 553
Score = 42.1 bits (21), Expect = 0.090
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 351 caccaccaacggcgtgcgcatcaag 375
|||| ||||||||||||||||||||
Sbjct: 433 cacctccaacggcgtgcgcatcaag 457
>gb|CW245687.1|CW245687 104_706_11221077_148_37594_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221077, DNA
sequence
Length = 582
Score = 52.0 bits (26), Expect = 9e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 189 caccggcgacgactgcgtctccatcggccc 218
|||||||||||||||||||||| |||||||
Sbjct: 271 caccggcgacgactgcgtctccgtcggccc 300
Score = 44.1 bits (22), Expect = 0.023
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 450 caaccccatcatcatcgaccag 471
||||||||||||||||||||||
Sbjct: 532 caaccccatcatcatcgaccag 553
Score = 42.1 bits (21), Expect = 0.090
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 351 caccaccaacggcgtgcgcatcaag 375
|||| ||||||||||||||||||||
Sbjct: 433 cacctccaacggcgtgcgcatcaag 457
>gb|CW345745.1|CW345745 104_849_11488663_116_36213_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11488663, DNA
sequence
Length = 712
Score = 52.0 bits (26), Expect = 9e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 450 caaccccatcatcatcgaccagtacttctgcccc 483
|||||||||||||||||||||| ||| |||||||
Sbjct: 510 caaccccatcatcatcgaccagaactactgcccc 543
>gb|CW345746.1|CW345746 104_849_11488663_148_36214_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11488663, DNA
sequence
Length = 734
Score = 52.0 bits (26), Expect = 9e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 450 caaccccatcatcatcgaccagtacttctgcccc 483
|||||||||||||||||||||| ||| |||||||
Sbjct: 540 caaccccatcatcatcgaccagaactactgcccc 507
>gb|CW405409.1|CW405409 fsbb001f097p05f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f097p05, DNA
sequence
Length = 754
Score = 52.0 bits (26), Expect = 9e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 450 caaccccatcatcatcgaccagtacttctgcccc 483
|||||||||||||||||||||| ||| |||||||
Sbjct: 57 caaccccatcatcatcgaccagaactactgcccc 90
>gb|BZ423602.1|BZ423602 id51c01.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone id51c01 5', DNA sequence
Length = 574
Score = 50.1 bits (25), Expect = 4e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 436 atggaggaggtggccaaccccatcatcatcgac 468
||||| || ||||||||||||||||||||||||
Sbjct: 439 atggacgacgtggccaaccccatcatcatcgac 471
Score = 50.1 bits (25), Expect = 4e-004
Identities = 97/121 (80%)
Strand = Plus / Plus
Query: 196 gacgactgcgtctccatcggccctgggagcgacggtgtcatggtgaacaacatcacctgt 255
||||||||| |||||||||||||||| ||| ||| ||| || | | | |||||||
Sbjct: 199 gacgactgcatctccatcggccctggcagcaccgggatcaacgtcaccggcgtcacctgc 258
Query: 256 ggccccgggcagggcatcagtgtgggctgcctaggccgctacaaggatgagaaggacgtg 315
|| ||||| || |||||||| || ||| |||| ||| | ||||||||||||||||| |||
Sbjct: 259 gggcccggccacggcatcagcgtcggcagcctgggcaggtacaaggatgagaaggatgtg 318
Query: 316 a 316
|
Sbjct: 319 a 319
>gb|CL165002.1|CL165002 104_359_10808294_114_31816_278 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10808294, DNA
sequence
Length = 787
Score = 50.1 bits (25), Expect = 4e-004
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 530 tcaaggacgtcaccttccgcaacatctccggcacgtcgtccacgcccgaagccgtcagcc 589
||||||||||| ||||| ||| || ||||||| || ||| ||||| ||||||||||
Sbjct: 536 tcaaggacgtctccttcaagaacgtcaccggcacctccgccagccccgaggccgtcagcc 477
Query: 590 tgctctgctccga 602
|||||||||||||
Sbjct: 476 tgctctgctccga 464
Score = 40.1 bits (20), Expect = 0.35
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 655 ggcaagaacaacaagaccatggctgtgtgcagcaacgccaaggg 698
||||| ||||||||||||||||| || ||| |||||||||||
Sbjct: 411 ggcaaaaacaacaagaccatggccgtatgccaaaacgccaaggg 368
>gb|CW197885.1|CW197885 104_622_11181920_148_36831_026 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11181920, DNA
sequence
Length = 668
Score = 50.1 bits (25), Expect = 4e-004
Identities = 61/73 (83%)
Strand = Plus / Plus
Query: 530 tcaaggacgtcaccttccgcaacatctccggcacgtcgtccacgcccgaagccgtcagcc 589
||||||||||| ||||| ||| || ||||||| || ||| ||||| ||||||||||
Sbjct: 90 tcaaggacgtctccttcaagaacgtcaccggcacctccgccagccccgaggccgtcagcc 149
Query: 590 tgctctgctccga 602
|||||||||||||
Sbjct: 150 tgctctgctccga 162
Score = 40.1 bits (20), Expect = 0.35
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 655 ggcaagaacaacaagaccatggctgtgtgcagcaacgccaaggg 698
||||| ||||||||||||||||| || ||| |||||||||||
Sbjct: 215 ggcaaaaacaacaagaccatggccgtatgccaaaacgccaaggg 258
>gb|CW241738.1|CW241738 104_701_11218937_148_37556_079 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11218937, DNA
sequence
Length = 656
Score = 50.1 bits (25), Expect = 4e-004
Identities = 61/73 (83%)
Strand = Plus / Plus
Query: 530 tcaaggacgtcaccttccgcaacatctccggcacgtcgtccacgcccgaagccgtcagcc 589
||||||||||| ||||| ||| || ||||||| || ||| ||||| ||||||||||
Sbjct: 479 tcaaggacgtctccttcaagaacgtcaccggcacctccgccagccccgaggccgtcagcc 538
Query: 590 tgctctgctccga 602
|||||||||||||
Sbjct: 539 tgctctgctccga 551
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 192 cggcgacgactgcgtctccatcggccctggga 223
||||||||||||| ||||||||||||| ||||
Sbjct: 147 cggcgacgactgcatctccatcggccccggga 178
Score = 40.1 bits (20), Expect = 0.35
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 655 ggcaagaacaacaagaccatggctgtgtgcagcaacgccaaggg 698
||||| ||||||||||||||||| || ||| |||||||||||
Sbjct: 604 ggcaaaaacaacaagaccatggccgtatgccaaaacgccaaggg 647
>gb|CW323366.1|CW323366 104_817_11476592_148_35963_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11476592, DNA
sequence
Length = 680
Score = 50.1 bits (25), Expect = 4e-004
Identities = 97/121 (80%)
Strand = Plus / Minus
Query: 196 gacgactgcgtctccatcggccctgggagcgacggtgtcatggtgaacaacatcacctgt 255
||||||||| |||||||||||||||| ||| ||| ||| || | | | |||||||
Sbjct: 195 gacgactgcatctccatcggccctggcagcaccgggatcaacgtcaccggcgtcacctgc 136
Query: 256 ggccccgggcagggcatcagtgtgggctgcctaggccgctacaaggatgagaaggacgtg 315
|| ||||| || |||||||| || ||| |||| ||| | ||||||||||||||||| |||
Sbjct: 135 gggcccggccacggcatcagcgtcggcagcctgggcaggtacaaggatgagaaggatgtg 76
Query: 316 a 316
|
Sbjct: 75 a 75
>gb|CW463314.1|CW463314 fsbb001f211n16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f211n16, DNA
sequence
Length = 673
Score = 50.1 bits (25), Expect = 4e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 574 cccgaagccgtcagcctgctctgctccga 602
||||| |||||||||||||||||||||||
Sbjct: 505 cccgaggccgtcagcctgctctgctccga 477
Score = 40.1 bits (20), Expect = 0.35
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 655 ggcaagaacaacaagaccatggctgtgtgcagcaacgccaaggg 698
||||| ||||||||||||||||| || ||| |||||||||||
Sbjct: 424 ggcaaaaacaacaagaccatggccgtatgccaaaacgccaaggg 381
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 234,641
Number of Sequences: 832831
Number of extensions: 234641
Number of successful extensions: 67790
Number of sequences better than 0.5: 140
Number of HSP's better than 0.5 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67375
Number of HSP's gapped (non-prelim): 404
length of query: 923
length of database: 491,359,669
effective HSP length: 20
effective length of query: 903
effective length of database: 474,703,049
effective search space: 428656853247
effective search space used: 428656853247
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)