BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3185308.2.1
(1019 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG412450.1|BG412450 OV2_34_C12.g1_A002 Ovary 2 (OV2) Sor... 862 0.0
gb|BG412749.1|BG412749 OV2_34_C12.b1_A002 Ovary 2 (OV2) Sor... 686 0.0
gb|CL195140.1|CL195140 104_420_10942159_114_32302_028 Sorgh... 194 1e-047
gb|CW136107.1|CW136107 104_521_11118204_116_34845_048 Sorgh... 186 3e-045
gb|CW482801.1|CW482801 fsbb001f244b09f0 Sorghum methylation... 58 2e-006
gb|CL177978.1|CL177978 104_385_10894229_116_31914_293 Sorgh... 54 3e-005
gb|CW038341.1|CW038341 104_270_10504868_114_30385 Sorghum m... 54 3e-005
gb|CW075930.1|CW075930 104_363_10809810_114_31800_258 Sorgh... 54 3e-005
gb|CW325048.1|CW325048 104_819_11477484_116_35915_034 Sorgh... 54 3e-005
gb|CW416233.1|CW416233 fsbb001f116l03k0 Sorghum methylation... 54 3e-005
gb|CW426483.1|CW426483 fsbb001f137o10k0 Sorghum methylation... 54 3e-005
gb|CW479320.1|CW479320 fsbb001f237l21f0 Sorghum methylation... 54 3e-005
gb|CD231880.1|CD231880 SS1_30_D11.g1_A012 Salt-stressed see... 54 3e-005
gb|CF430353.1|CF430353 PH1_27_A08.g1_A002 Phosphorous-defic... 54 3e-005
gb|CN136158.1|CN136158 OX1_41_D05.b1_A002 Oxidatively-stres... 54 3e-005
gb|CN136232.1|CN136232 OX1_41_D05.g1_A002 Oxidatively-stres... 54 3e-005
gb|CX606996.1|CX606996 ANR1_6_C12.b1_A002 Anaerobic roots S... 54 3e-005
gb|CX607081.1|CX607081 ANR1_6_C12.g1_A002 Anaerobic roots S... 54 3e-005
gb|CX610991.1|CX610991 ANR1_22_B08.b1_A002 Anaerobic roots ... 54 3e-005
gb|CX611078.1|CX611078 ANR1_22_B08.g1_A002 Anaerobic roots ... 54 3e-005
gb|CW075931.1|CW075931 104_363_10809810_116_31801_258 Sorgh... 50 4e-004
gb|CL168596.1|CL168596 104_366_10810950_148_31806_246 Sorgh... 48 0.002
gb|CW087503.1|CW087503 104_432_10947671_114_32550_094 Sorgh... 48 0.002
gb|CW087504.1|CW087504 104_432_10947671_116_32554_094 Sorgh... 48 0.002
gb|CW121055.1|CW121055 104_498_11109679_116_34651_020 Sorgh... 48 0.002
gb|CW121056.1|CW121056 104_498_11109679_148_34655_020 Sorgh... 48 0.002
gb|CW180824.1|CW180824 104_595_11163161_148_36645_071 Sorgh... 48 0.002
gb|CW305278.1|CW305278 104_790_11466231_148_37440_056 Sorgh... 48 0.002
gb|CW346018.1|CW346018 104_849_11488804_116_36216_010 Sorgh... 48 0.002
gb|CW418675.1|CW418675 fsbb001f123d11k0 Sorghum methylation... 48 0.002
gb|BG357312.1|BG357312 OV2_12_D02.b1_A002 Ovary 2 (OV2) Sor... 48 0.002
gb|CD427876.1|CD427876 ETH1_34_A07.g1_A002 Ethylene-treated... 48 0.002
gb|CW126450.1|CW126450 104_507_11112905_116_34734_077 Sorgh... 46 0.006
gb|CW297858.1|CW297858 104_780_11462265_148_35650_043 Sorgh... 46 0.006
gb|DN551840.1|DN551840 pSPR-RT-A-H2_G06_S131 pSPR Sorghum p... 46 0.006
gb|AF320027.1|AF320027 Sorghum bicolor heme oxygenase 2 (HO... 46 0.006
gb|CW155481.1|CW155481 104_558_11146163_116_36367_048 Sorgh... 44 0.025
gb|CW355226.1|CW355226 fsbb001f019m09f0 Sorghum methylation... 44 0.025
gb|CW406606.1|CW406606 fsbb001f099l05f0 Sorghum methylation... 44 0.025
gb|BG054180.1|BG054180 OV2_2_C06.b1_A002 Ovary 2 (OV2) Sorg... 44 0.025
gb|CD204043.1|CD204043 HS1_3_A10.g1_A012 Heat-shocked seedl... 44 0.025
gb|CD224870.1|CD224870 CCC1_36_B01.g1_A007 Callus culture/c... 44 0.025
gb|BZ691734.1|BZ691734 SP__Ba0011P16.r SP__Ba Sorghum propi... 42 0.099
gb|CL161307.1|CL161307 104_352_10805620_116_31827_292 Sorgh... 42 0.099
gb|CW125564.1|CW125564 104_505_11112395_148_34709_034 Sorgh... 42 0.099
gb|CW223030.1|CW223030 104_658_11202689_148_37178_067 Sorgh... 42 0.099
gb|CW235943.1|CW235943 104_691_11215315_148_37401_070 Sorgh... 42 0.099
gb|CW357396.1|CW357396 fsbb001f024a12f0 Sorghum methylation... 42 0.099
gb|CW392760.1|CW392760 fsbb001f079i10f0 Sorghum methylation... 42 0.099
gb|CW785463.1|CW785463 SP__Ba0011P16.r SP__Ba Sorghum propi... 42 0.099
gb|CB925623.1|CB925623 ABA1_22_B05.g1_A012 Abscisic acid-tr... 42 0.099
gb|CB928546.1|CB928546 ABA1_16_A03.g1_A012 Abscisic acid-tr... 42 0.099
gb|CD425110.1|CD425110 SA1_10_F07.g1_A002 Salicylic acid-tr... 42 0.099
gb|CD461935.1|CD461935 SA1_31_D06.g1_A002 Salicylic acid-tr... 42 0.099
gb|CF071280.1|CF071280 FE1_16_E12.g1_A002 Iron-deficient se... 42 0.099
gb|CF428552.1|CF428552 PH1_15_D01.g1_A002 Phosphorous-defic... 42 0.099
gb|CF430195.1|CF430195 PH1_26_A08.g1_A002 Phosphorous-defic... 42 0.099
gb|CF430208.1|CF430208 PH1_26_H04.g1_A002 Phosphorous-defic... 42 0.099
gb|CF430536.1|CF430536 PH1_28_G06.g1_A002 Phosphorous-defic... 42 0.099
gb|CN149274.1|CN149274 WOUND1_61_F04.g1_A002 Wounded leaves... 42 0.099
gb|BZ339740.1|BZ339740 ic34d08.g1 WGS-SbicolorF (JM107 adap... 40 0.39
gb|CL173551.1|CL173551 104_377_10890948_116_31793_084 Sorgh... 40 0.39
gb|CW030261.1|CW030261 104_258_10500149_114_30403 Sorghum m... 40 0.39
gb|CW034071.1|CW034071 104_264_10502333_114_30358 Sorghum m... 40 0.39
gb|CW065484.1|CW065484 104_312_10523173_114_30128 Sorghum m... 40 0.39
gb|CW071999.1|CW071999 104_325_10592018_114_30536 Sorghum m... 40 0.39
gb|CW079177.1|CW079177 104_399_10899353_114_32392_079 Sorgh... 40 0.39
gb|CW107276.1|CW107276 104_477_11096492_148_34473_074 Sorgh... 40 0.39
gb|CW169627.1|CW169627 104_579_11154771_148_36500_004 Sorgh... 40 0.39
gb|CW214760.1|CW214760 104_646_11194182_116_37049_017 Sorgh... 40 0.39
gb|CW218776.1|CW218776 104_652_11196369_116_37460_039 Sorgh... 40 0.39
gb|CW218777.1|CW218777 104_652_11196369_148_37491_039 Sorgh... 40 0.39
gb|CW232558.1|CW232558 104_685_11212882_148_37425_043 Sorgh... 40 0.39
gb|CW258347.1|CW258347 104_724_11227826_148_35167_011 Sorgh... 40 0.39
gb|CW303532.1|CW303532 104_788_11465289_148_35695_045 Sorgh... 40 0.39
gb|CW316724.1|CW316724 104_808_11473041_116_35853_043 Sorgh... 40 0.39
gb|CW326376.1|CW326376 104_821_11478184_116_36069_054 Sorgh... 40 0.39
gb|CW354837.1|CW354837 fsbb001f019d12f0 Sorghum methylation... 40 0.39
gb|CW354838.1|CW354838 fsbb001f019d12k0 Sorghum methylation... 40 0.39
gb|CW374791.1|CW374791 fsbb001f051n11f0 Sorghum methylation... 40 0.39
gb|CW410990.1|CW410990 fsbb001f105p14k0 Sorghum methylation... 40 0.39
gb|CW421116.1|CW421116 fsbb001f128m14f0 Sorghum methylation... 40 0.39
gb|CW452245.1|CW452245 fsbb001f192l01f0 Sorghum methylation... 40 0.39
gb|CW491189.1|CW491189 fsbb001f280p05f0 Sorghum methylation... 40 0.39
gb|CW495135.1|CW495135 fsbb001f286m03k0 Sorghum methylation... 40 0.39
gb|AW564458.1|AW564458 LG1_295_D06.b1_A002 Light Grown 1 (L... 40 0.39
gb|AW678072.1|AW678072 WS1_13_D12.b1_A002 Water-stressed 1 ... 40 0.39
gb|AW745509.1|AW745509 WS1_35_C08.b1_A002 Water-stressed 1 ... 40 0.39
gb|AW745722.1|AW745722 WS1_37_A05.b1_A002 Water-stressed 1 ... 40 0.39
gb|AW746909.1|AW746909 WS1_56_G05.b1_A002 Water-stressed 1 ... 40 0.39
gb|AW922996.1|AW922996 DG1_48_D12.b1_A002 Dark Grown 1 (DG1... 40 0.39
gb|BE354990.1|BE354990 DG1_10_H07.b1_A002 Dark Grown 1 (DG1... 40 0.39
gb|BE356701.1|BE356701 DG1_12_E02.b1_A002 Dark Grown 1 (DG1... 40 0.39
gb|BE357049.1|BE357049 DG1_146_F02.b1_A002 Dark Grown 1 (DG... 40 0.39
gb|BE593559.1|BE593559 WS1_100_G03.b1_A002 Water-stressed 1... 40 0.39
gb|BF421345.1|BF421345 FM1_7_E06.b1_A003 Floral-Induced Mer... 40 0.39
gb|BG047611.1|BG047611 OV1_26_A06.b1_A002 Ovary 1 (OV1) Sor... 40 0.39
gb|BG054373.1|BG054373 OV2_3_F03.b1_A002 Ovary 2 (OV2) Sorg... 40 0.39
gb|BG411337.1|BG411337 EM1_20_F03.b1_A002 Embryo 1 (EM1) So... 40 0.39
gb|BG556164.1|BG556164 EM1_68_E09.b1_A002 Embryo 1 (EM1) So... 40 0.39
gb|BG556631.1|BG556631 EM1_37_F06.b1_A002 Embryo 1 (EM1) So... 40 0.39
gb|BG557304.1|BG557304 EM1_42_C05.b1_A002 Embryo 1 (EM1) So... 40 0.39
gb|BG557469.1|BG557469 EM1_44_E12.b1_A002 Embryo 1 (EM1) So... 40 0.39
gb|BG817383.1|BG817383 EM1_75_B09.b1_A002 Embryo 1 (EM1) So... 40 0.39
gb|BI140900.1|BI140900 IP1_40_E08.b1_A002 Immature pannicle... 40 0.39
gb|BI245987.1|BI245987 IP1_66_C05.b1_A002 Immature pannicle... 40 0.39
gb|BG355581.2|BG355581 EM1_19_F04.b1_A002 Embryo 1 (EM1) So... 40 0.39
gb|BM317778.1|BM317778 WS1_63_D04.b9_A002 Water-stressed 1 ... 40 0.39
gb|CD222411.1|CD222411 CCC1_21_F08.g1_A007 Callus culture/c... 40 0.39
gb|CD222750.1|CD222750 CCC1_23_C03.g1_A007 Callus culture/c... 40 0.39
gb|CD230660.1|CD230660 SS1_47_G11.g1_A012 Salt-stressed see... 40 0.39
gb|CD428576.1|CD428576 ETH1_27_B01.g1_A002 Ethylene-treated... 40 0.39
gb|CF429993.1|CF429993 PH1_25_G07.g1_A002 Phosphorous-defic... 40 0.39
gb|CN124096.1|CN124096 RHOH1_2_D05.g1_A002 Acid- and alkali... 40 0.39
gb|CN129165.1|CN129165 RHOH1_33_H04.g1_A002 Acid- and alkal... 40 0.39
gb|CN133807.1|CN133807 OX1_18_A07.g1_A002 Oxidatively-stres... 40 0.39
gb|CN135270.1|CN135270 OX1_31_E02.g1_A002 Oxidatively-stres... 40 0.39
gb|CN139082.1|CN139082 OX1_15_H05.g1_A002 Oxidatively-stres... 40 0.39
gb|CN139177.1|CN139177 OX1_16_A12.g1_A002 Oxidatively-stres... 40 0.39
gb|CN139228.1|CN139228 OX1_16_G04.g1_A002 Oxidatively-stres... 40 0.39
gb|CN142714.1|CN142714 WOUND1_11_F01.g1_A002 Wounded leaves... 40 0.39
gb|CN147876.1|CN147876 WOUND1_52_G05.g1_A002 Wounded leaves... 40 0.39
gb|CX615804.1|CX615804 GABR1_23_A02.g1_A002 GA- or brassino... 40 0.39
gb|CX619951.1|CX619951 GABR1_48_H12.g1_A002 GA- or brassino... 40 0.39
gb|CX623191.1|CX623191 GABR1_68_F03.b1_A002 GA- or brassino... 40 0.39
>gb|BG412450.1|BG412450 OV2_34_C12.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 657
Score = 862 bits (435), Expect = 0.0
Identities = 549/587 (93%)
Strand = Plus / Plus
Query: 227 caccacggacagcggcgcgtgcggctacaagggcgagctggggaaagactacggcaccct 286
|||||||||| ||||||||||||||||||||||||||||||| || ||||||||| | ||
Sbjct: 10 caccacggacggcggcgcgtgcggctacaagggcgagctgggaaaggactacggcgcgct 69
Query: 287 gacggcggccgtgggcccgtcgctgtacaccaacggcaccgggtgcggcgcgtgctacga 346
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 70 cacggcggccgtgggcccgtcgctctacaccaacggcgccgggtgcggcgcgtgctacga 129
Query: 347 gctcaagggccccaagggcaccgtggtggtgacggccaccaacgaggccccgccgccggt 406
|||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 130 gctcaagggctccaagggcaccgtggtcgtgacggccaccaaccaggccccgccgccggt 189
Query: 407 gagcgggcagaagggcgagcactttgacctcaccataccggcgttcctcaagatcgccga 466
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||
Sbjct: 190 cagcgggcagaagggcgagcacttcgacctcaccatgccggcgttcctcaagatcgacga 249
Query: 467 ggagaaggccggcatcgtgcccatcacctaccgcaaggtggcgtgcgagaggaaaggcgg 526
||||||||||||||| |||||||||||||| |||||||||||||||| |||| |||||||
Sbjct: 250 ggagaaggccggcattgtgcccatcacctatcgcaaggtggcgtgcgcgaggcaaggcgg 309
Query: 527 catccggtacacgatcacagggaaccagcactacagcgaggtgaaggtgaccaacgtggg 586
|||||||||||| ||||| ||||||| | |||||| | ||||| |||||||||||||||
Sbjct: 310 catccggtacaccatcacggggaacccgaactacaacatggtgatggtgaccaacgtggg 369
Query: 587 cggcgccggggacgtggtggcgctgtgggtgaagggcaacaagcgcgtcaagtggacgcc 646
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 370 cggcgccggggacgtggtggcgctgtcggtgaagggcaacaagcgcgtcaagtggacgcc 429
Query: 647 gatgaagcgcagctggggccagctctggaccacggaggtcgacctcaccggcgagtcgct 706
|||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||
Sbjct: 430 gatgaagcgcagctggggacagctctggatcacggaggtcaacctcaccggcgagtcgct 489
Query: 707 gacgttccgcgtcatgaccgccgaccaccgcaaggctacctcctggcacgtcacgccccg 766
|||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||
Sbjct: 490 gacgttccgcgtcatgaccggcgaccaccgcaaggccacctcctggcacgtcgcgccccg 549
Query: 767 cgactggcagttcggcaaaacgtaccaggccaccaagaacttctagg 813
||||||| ||| || |||||| |||||||||||||||||||||||||
Sbjct: 550 cgactggaagtacgacaaaacataccaggccaccaagaacttctagg 596
>gb|BG412749.1|BG412749 OV2_34_C12.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 607
Score = 686 bits (346), Expect = 0.0
Identities = 462/500 (92%), Gaps = 3/500 (0%)
Strand = Plus / Plus
Query: 135 aagaagccccacgtcaaccacggcaagtttaaggcggagccgtggacggacgggcacgcg 194
|||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 111 aagaagccccacgttaaccacggcaagttcaaggcggacccgtggacggacgggcacgcg 170
Query: 195 acgtactacggcgggcgcgacgggttaactgacaccacggacagcggcgcgtgcggctac 254
|||| ||||||||| |||||||||| | | |||||||||| |||||||||||||||||
Sbjct: 171 acgttctacggcggccgcgacgggt---ccggcaccacggacggcggcgcgtgcggctac 227
Query: 255 aagggcgagctggggaaagactacggcaccctgacggcggccgtgggcccgtcgctgtac 314
|||||||||||||| || ||||||||| | || ||||||||||||||||||||||| |||
Sbjct: 228 aagggcgagctgggaaaggactacggcgcgctcacggcggccgtgggcccgtcgctctac 287
Query: 315 accaacggcaccgggtgcggcgcgtgctacgagctcaagggccccaagggcaccgtggtg 374
||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 288 accaacggcgccgggtgcggcgcgtgctacgagctcaagggctccaagggcaccgtggtc 347
Query: 375 gtgacggccaccaacgaggccccgccgccggtgagcgggcagaagggcgagcactttgac 434
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 348 gtgacggccaccaaccaggccccgccgccggtcagcgggcagaagggcgagcacttcgac 407
Query: 435 ctcaccataccggcgttcctcaagatcgccgaggagaaggccggcatcgtgcccatcacc 494
|||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 408 ctcaccatgccggcgttcctcaagatcgacgaggagaaggccggcattgtgcccatcacc 467
Query: 495 taccgcaaggtggcgtgcgagaggaaaggcggcatccggtacacgatcacagggaaccag 554
|| |||||||||||||||| |||| ||||||||||||||||||| ||||| ||||||| |
Sbjct: 468 tatcgcaaggtggcgtgcgcgaggcaaggcggcatccggtacaccatcacggggaacccg 527
Query: 555 cactacagcgaggtgaaggtgaccaacgtgggcggcgccggggacgtggtggcgctgtgg 614
|||||| | ||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 528 aactacaacatggtgatggtgaccaacgtgggcggcgccggggacgtggtggcgctgtcg 587
Query: 615 gtgaagggcaacaagcgcgt 634
||||||||||||||||||||
Sbjct: 588 gtgaagggcaacaagcgcgt 607
>gb|CL195140.1|CL195140 104_420_10942159_114_32302_028 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10942159, DNA
sequence
Length = 654
Score = 194 bits (98), Expect = 1e-047
Identities = 206/242 (85%)
Strand = Plus / Minus
Query: 423 gagcactttgacctcaccataccggcgttcctcaagatcgccgaggagaaggccggcatc 482
|||||||| ||||| |||| |||||||||||| ||||||| ||||||||||||||||||
Sbjct: 548 gagcacttcgacctgtccatgccggcgttcctccagatcgcggaggagaaggccggcatc 489
Query: 483 gtgcccatcacctaccgcaaggtggcgtgcgagaggaaaggcggcatccggtacacgatc 542
|||||| || ||||||| ||||||||||| |||| | ||||||||||||||| | |||
Sbjct: 488 gtgcccgtctcctaccggcgggtggcgtgcgcgaggcagggcggcatccggtacgccatc 429
Query: 543 acagggaaccagcactacagcgaggtgaaggtgaccaacgtgggcggcgccggggacgtg 602
| |||||| || ||| || | ||||| ||| |||||||||||||||||||| ||||||
Sbjct: 428 gccgggaacaagtacttcaacatggtgacggtcaccaacgtgggcggcgccggcgacgtg 369
Query: 603 gtggcgctgtgggtgaagggcaacaagcgcgtcaagtggacgccgatgaagcgcagctgg 662
| |||| ||| ||||||||| | ||||||||||||||||||| | ||||||||| ||||
Sbjct: 368 gcggcggtgtcggtgaaggggagcaagcgcgtcaagtggacggagctgaagcgcaactgg 309
Query: 663 gg 664
||
Sbjct: 308 gg 307
Score = 91.7 bits (46), Expect = 1e-016
Identities = 108/126 (85%), Gaps = 2/126 (1%)
Strand = Plus / Minus
Query: 687 gacctcaccggcgagtcgctgacgttccgcgtcatgaccgccgaccaccgcaaggctacc 746
||||||||| ||||||||||||||||| | || ||||||| ||||||||||||||| ||
Sbjct: 284 gacctcacctgcgagtcgctgacgttcagggtgatgaccggcgaccaccgcaaggccacg 225
Query: 747 tcctggcacgtcacgccccg-cgactggcagttcggcaaaacgtaccaggccaccaagaa 805
|| ||||||||| | ||||| |||||| |||||||| ||||||||||| |||||||
Sbjct: 224 tcgtggcacgtc-ctccccgaggactggaagttcggcgtcacgtaccaggcgtccaagaa 166
Query: 806 cttcta 811
||||||
Sbjct: 165 cttcta 160
>gb|CW136107.1|CW136107 104_521_11118204_116_34845_048 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11118204, DNA
sequence
Length = 597
Score = 186 bits (94), Expect = 3e-045
Identities = 205/242 (84%)
Strand = Plus / Minus
Query: 423 gagcactttgacctcaccataccggcgttcctcaagatcgccgaggagaaggccggcatc 482
|||||||| ||||| |||| ||||||||| || ||||||| ||||||||||||||||||
Sbjct: 593 gagcacttcgacctgtccatgccggcgttcttccagatcgcggaggagaaggccggcatc 534
Query: 483 gtgcccatcacctaccgcaaggtggcgtgcgagaggaaaggcggcatccggtacacgatc 542
|||||| || ||||||| ||||||||||| |||| | ||||||||||||||| | |||
Sbjct: 533 gtgcccgtctcctaccggcgggtggcgtgcgcgaggcagggcggcatccggtacgccatc 474
Query: 543 acagggaaccagcactacagcgaggtgaaggtgaccaacgtgggcggcgccggggacgtg 602
| |||||| || ||| || | ||||| ||| |||||||||||||||||||| ||||||
Sbjct: 473 gccgggaacaagtacttcaacatggtgacggtcaccaacgtgggcggcgccggcgacgtg 414
Query: 603 gtggcgctgtgggtgaagggcaacaagcgcgtcaagtggacgccgatgaagcgcagctgg 662
| |||| ||| ||||||||| | ||||||||||||||||||| | ||||||||| ||||
Sbjct: 413 gcggcggtgtcggtgaaggggagcaagcgcgtcaagtggacggagctgaagcgcaactgg 354
Query: 663 gg 664
||
Sbjct: 353 gg 352
Score = 91.7 bits (46), Expect = 1e-016
Identities = 108/126 (85%), Gaps = 2/126 (1%)
Strand = Plus / Minus
Query: 687 gacctcaccggcgagtcgctgacgttccgcgtcatgaccgccgaccaccgcaaggctacc 746
||||||||| ||||||||||||||||| | || ||||||| ||||||||||||||| ||
Sbjct: 329 gacctcacctgcgagtcgctgacgttcagggtgatgaccggcgaccaccgcaaggccacg 270
Query: 747 tcctggcacgtcacgccccg-cgactggcagttcggcaaaacgtaccaggccaccaagaa 805
|| ||||||||| | ||||| |||||| |||||||| ||||||||||| |||||||
Sbjct: 269 tcgtggcacgtc-ctccccgaggactggaagttcggcgtcacgtaccaggcgtccaagaa 211
Query: 806 cttcta 811
||||||
Sbjct: 210 cttcta 205
>gb|CW482801.1|CW482801 fsbb001f244b09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f244b09, DNA
sequence
Length = 515
Score = 58.0 bits (29), Expect = 2e-006
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 423 gagcactttgacctcaccataccggcgttcctcaagatcgccgaggagaaggc 475
|||||||| ||||| |||| |||||||||||| ||||||| |||||||||||
Sbjct: 64 gagcacttcgacctgtccatgccggcgttcctccagatcgcggaggagaaggc 12
>gb|CL177978.1|CL177978 104_385_10894229_116_31914_293 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10894229, DNA
sequence
Length = 704
Score = 54.0 bits (27), Expect = 3e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 572 ggtgaccaacgtgggcggcgccggggacgtg 602
|||||||||||||||||||||||| ||||||
Sbjct: 210 ggtgaccaacgtgggcggcgccggcgacgtg 240
>gb|CW038341.1|CW038341 104_270_10504868_114_30385 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10504868, DNA
sequence
Length = 715
Score = 54.0 bits (27), Expect = 3e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 572 ggtgaccaacgtgggcggcgccggggacgtg 602
|||||||||||||| ||||||||||||||||
Sbjct: 408 ggtgaccaacgtggccggcgccggggacgtg 378
>gb|CW075930.1|CW075930 104_363_10809810_114_31800_258 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10809810, DNA
sequence
Length = 719
Score = 54.0 bits (27), Expect = 3e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 572 ggtgaccaacgtgggcggcgccggggacgtg 602
|||||||||||||| ||||||||||||||||
Sbjct: 473 ggtgaccaacgtggccggcgccggggacgtg 503
>gb|CW325048.1|CW325048 104_819_11477484_116_35915_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11477484, DNA
sequence
Length = 612
Score = 54.0 bits (27), Expect = 3e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 572 ggtgaccaacgtgggcggcgccggggacgtg 602
|||||||||||||||||||||||| ||||||
Sbjct: 117 ggtgaccaacgtgggcggcgccggcgacgtg 147
>gb|CW416233.1|CW416233 fsbb001f116l03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f116l03, DNA
sequence
Length = 215
Score = 54.0 bits (27), Expect = 3e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 572 ggtgaccaacgtgggcggcgccggggacgtg 602
|||||||||||||||||||||||| ||||||
Sbjct: 179 ggtgaccaacgtgggcggcgccggcgacgtg 209
>gb|CW426483.1|CW426483 fsbb001f137o10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f137o10, DNA
sequence
Length = 727
Score = 54.0 bits (27), Expect = 3e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 572 ggtgaccaacgtgggcggcgccggggacgtg 602
|||||||||||||||||||||||| ||||||
Sbjct: 104 ggtgaccaacgtgggcggcgccggcgacgtg 134
>gb|CW479320.1|CW479320 fsbb001f237l21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f237l21, DNA
sequence
Length = 522
Score = 54.0 bits (27), Expect = 3e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 572 ggtgaccaacgtgggcggcgccggggacgtg 602
|||||||||||||| ||||||||||||||||
Sbjct: 343 ggtgaccaacgtggccggcgccggggacgtg 373
>gb|CD231880.1|CD231880 SS1_30_D11.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_30_D11_A012 5', mRNA sequence
Length = 691
Score = 54.0 bits (27), Expect = 3e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 572 ggtgaccaacgtgggcggcgccggggacgtg 602
|||||||||||||| ||||||||||||||||
Sbjct: 607 ggtgaccaacgtggccggcgccggggacgtg 637
Score = 44.1 bits (22), Expect = 0.025
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 474 gccggcatcgtgcccatcacctaccgcaaggtggcgtgcgagaggaaaggcggcatccgg 533
||||||||||||||| || ||||| | | |||| |||||| || ||| ||||| ||||||
Sbjct: 509 gccggcatcgtgcccgtcgcctacaggagggtgccgtgcgtgaagaagggcgggatccgg 568
Query: 534 tacacgatca 543
| ||| ||||
Sbjct: 569 ttcaccatca 578
>gb|CF430353.1|CF430353 PH1_27_A08.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_27_A08_A002 5', mRNA sequence
Length = 787
Score = 54.0 bits (27), Expect = 3e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 572 ggtgaccaacgtgggcggcgccggggacgtg 602
|||||||||||||| ||||||||||||||||
Sbjct: 607 ggtgaccaacgtggccggcgccggggacgtg 637
Score = 44.1 bits (22), Expect = 0.025
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 474 gccggcatcgtgcccatcacctaccgcaaggtggcgtgcgagaggaaaggcggcatccgg 533
||||||||||||||| || ||||| | | |||| |||||| || ||| ||||| ||||||
Sbjct: 509 gccggcatcgtgcccgtcgcctacaggagggtgccgtgcgtgaagaagggcgggatccgg 568
Query: 534 tacacgatca 543
| ||| ||||
Sbjct: 569 ttcaccatca 578
>gb|CN136158.1|CN136158 OX1_41_D05.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_41_D05_A002 3', mRNA sequence
Length = 725
Score = 54.0 bits (27), Expect = 3e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 572 ggtgaccaacgtgggcggcgccggggacgtg 602
|||||||||||||| ||||||||||||||||
Sbjct: 268 ggtgaccaacgtggccggcgccggggacgtg 298
Score = 44.1 bits (22), Expect = 0.025
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 474 gccggcatcgtgcccatcacctaccgcaaggtggcgtgcgagaggaaaggcggcatccgg 533
||||||||||||||| || ||||| | | |||| |||||| || ||| ||||| ||||||
Sbjct: 170 gccggcatcgtgcccgtcgcctacaggagggtgccgtgcgtgaagaagggcgggatccgg 229
Query: 534 tacacgatca 543
| ||| ||||
Sbjct: 230 ttcaccatca 239
>gb|CN136232.1|CN136232 OX1_41_D05.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_41_D05_A002 5', mRNA sequence
Length = 840
Score = 54.0 bits (27), Expect = 3e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 572 ggtgaccaacgtgggcggcgccggggacgtg 602
|||||||||||||| ||||||||||||||||
Sbjct: 603 ggtgaccaacgtggccggcgccggggacgtg 633
Score = 44.1 bits (22), Expect = 0.025
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 474 gccggcatcgtgcccatcacctaccgcaaggtggcgtgcgagaggaaaggcggcatccgg 533
||||||||||||||| || ||||| | | |||| |||||| || ||| ||||| ||||||
Sbjct: 505 gccggcatcgtgcccgtcgcctacaggagggtgccgtgcgtgaagaagggcgggatccgg 564
Query: 534 tacacgatca 543
| ||| ||||
Sbjct: 565 ttcaccatca 574
>gb|CX606996.1|CX606996 ANR1_6_C12.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_6_C12_A002 3', mRNA sequence
Length = 699
Score = 54.0 bits (27), Expect = 3e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 572 ggtgaccaacgtgggcggcgccggggacgtg 602
|||||||||||||| ||||||||||||||||
Sbjct: 6 ggtgaccaacgtggccggcgccggggacgtg 36
>gb|CX607081.1|CX607081 ANR1_6_C12.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_6_C12_A002 5', mRNA sequence
Length = 705
Score = 54.0 bits (27), Expect = 3e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 572 ggtgaccaacgtgggcggcgccggggacgtg 602
|||||||||||||| ||||||||||||||||
Sbjct: 590 ggtgaccaacgtggccggcgccggggacgtg 620
Score = 44.1 bits (22), Expect = 0.025
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 474 gccggcatcgtgcccatcacctaccgcaaggtggcgtgcgagaggaaaggcggcatccgg 533
||||||||||||||| || ||||| | | |||| |||||| || ||| ||||| ||||||
Sbjct: 492 gccggcatcgtgcccgtcgcctacaggagggtgccgtgcgtgaagaagggcgggatccgg 551
Query: 534 tacacgatca 543
| ||| ||||
Sbjct: 552 ttcaccatca 561
>gb|CX610991.1|CX610991 ANR1_22_B08.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_22_B08_A002 3', mRNA sequence
Length = 731
Score = 54.0 bits (27), Expect = 3e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 572 ggtgaccaacgtgggcggcgccggggacgtg 602
|||||||||||||| ||||||||||||||||
Sbjct: 50 ggtgaccaacgtggccggcgccggggacgtg 80
>gb|CX611078.1|CX611078 ANR1_22_B08.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_22_B08_A002 5', mRNA sequence
Length = 605
Score = 54.0 bits (27), Expect = 3e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 572 ggtgaccaacgtgggcggcgccggggacgtg 602
|||||||||||||| ||||||||||||||||
Sbjct: 475 ggtgaccaacgtggccggcgccggggacgtg 505
>gb|CW075931.1|CW075931 104_363_10809810_116_31801_258 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10809810, DNA
sequence
Length = 503
Score = 50.1 bits (25), Expect = 4e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 572 ggtgaccaacgtgggcggcgccggggacg 600
|||||||||||||| ||||||||||||||
Sbjct: 385 ggtgaccaacgtggccggcgccggggacg 357
>gb|CL168596.1|CL168596 104_366_10810950_148_31806_246 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810950, DNA
sequence
Length = 194
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 107 cgaggaggaggaggacggcggcgg 130
||||||||||||||||||||||||
Sbjct: 90 cgaggaggaggaggacggcggcgg 67
>gb|CW087503.1|CW087503 104_432_10947671_114_32550_094 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10947671, DNA
sequence
Length = 682
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 108 gaggaggaggaggacggcggcggc 131
||||||||||||||||||||||||
Sbjct: 233 gaggaggaggaggacggcggcggc 256
>gb|CW087504.1|CW087504 104_432_10947671_116_32554_094 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10947671, DNA
sequence
Length = 602
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 108 gaggaggaggaggacggcggcggc 131
||||||||||||||||||||||||
Sbjct: 513 gaggaggaggaggacggcggcggc 490
>gb|CW121055.1|CW121055 104_498_11109679_116_34651_020 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11109679, DNA
sequence
Length = 588
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 106 ccgaggaggaggaggacggcggcg 129
||||||||||||||||||||||||
Sbjct: 372 ccgaggaggaggaggacggcggcg 349
>gb|CW121056.1|CW121056 104_498_11109679_148_34655_020 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11109679, DNA
sequence
Length = 643
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 106 ccgaggaggaggaggacggcggcg 129
||||||||||||||||||||||||
Sbjct: 398 ccgaggaggaggaggacggcggcg 421
>gb|CW180824.1|CW180824 104_595_11163161_148_36645_071 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11163161, DNA
sequence
Length = 654
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 108 gaggaggaggaggacggcggcggc 131
||||||||||||||||||||||||
Sbjct: 138 gaggaggaggaggacggcggcggc 161
>gb|CW305278.1|CW305278 104_790_11466231_148_37440_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11466231, DNA
sequence
Length = 656
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 108 gaggaggaggaggacggcggcggc 131
||||||||||||||||||||||||
Sbjct: 318 gaggaggaggaggacggcggcggc 341
>gb|CW346018.1|CW346018 104_849_11488804_116_36216_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11488804, DNA
sequence
Length = 636
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 108 gaggaggaggaggacggcggcggc 131
||||||||||||||||||||||||
Sbjct: 385 gaggaggaggaggacggcggcggc 408
>gb|CW418675.1|CW418675 fsbb001f123d11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f123d11, DNA
sequence
Length = 618
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 108 gaggaggaggaggacggcggcggc 131
||||||||||||||||||||||||
Sbjct: 415 gaggaggaggaggacggcggcggc 438
>gb|BG357312.1|BG357312 OV2_12_D02.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 401
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 106 ccgaggaggaggaggacggcggcg 129
||||||||||||||||||||||||
Sbjct: 207 ccgaggaggaggaggacggcggcg 230
>gb|CD427876.1|CD427876 ETH1_34_A07.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_34_A07_A002 5', mRNA sequence
Length = 508
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 107 cgaggaggaggaggacggcggcgg 130
||||||||||||||||||||||||
Sbjct: 42 cgaggaggaggaggacggcggcgg 19
>gb|CW126450.1|CW126450 104_507_11112905_116_34734_077 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11112905, DNA
sequence
Length = 338
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 109 aggaggaggaggacggcggcggc 131
|||||||||||||||||||||||
Sbjct: 329 aggaggaggaggacggcggcggc 307
>gb|CW297858.1|CW297858 104_780_11462265_148_35650_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11462265, DNA
sequence
Length = 509
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 109 aggaggaggaggacggcggcggc 131
|||||||||||||||||||||||
Sbjct: 77 aggaggaggaggacggcggcggc 55
>gb|DN551840.1|DN551840 pSPR-RT-A-H2_G06_S131 pSPR Sorghum propinquum cDNA, mRNA sequence
Length = 861
Score = 46.1 bits (23), Expect = 0.006
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 578 caacgtgggcggcgccggggacgtggt 604
|||||||||||||||||| ||||||||
Sbjct: 685 caacgtgggcggcgccggcgacgtggt 711
>gb|AF320027.1|AF320027 Sorghum bicolor heme oxygenase 2 (HO2) mRNA, partial cds; nuclear
gene for chloroplast product
Length = 1444
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 109 aggaggaggaggacggcggcggc 131
|||||||||||||||||||||||
Sbjct: 386 aggaggaggaggacggcggcggc 408
>gb|CW155481.1|CW155481 104_558_11146163_116_36367_048 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11146163, DNA
sequence
Length = 672
Score = 44.1 bits (22), Expect = 0.025
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 100 cgggctccgaggaggaggagga 121
||||||||||||||||||||||
Sbjct: 325 cgggctccgaggaggaggagga 304
>gb|CW355226.1|CW355226 fsbb001f019m09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f019m09, DNA
sequence
Length = 742
Score = 44.1 bits (22), Expect = 0.025
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 100 cgggctccgaggaggaggagga 121
||||||||||||||||||||||
Sbjct: 514 cgggctccgaggaggaggagga 493
>gb|CW406606.1|CW406606 fsbb001f099l05f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f099l05, DNA
sequence
Length = 572
Score = 44.1 bits (22), Expect = 0.025
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 100 cgggctccgaggaggaggagga 121
||||||||||||||||||||||
Sbjct: 309 cgggctccgaggaggaggagga 330
>gb|BG054180.1|BG054180 OV2_2_C06.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 357
Score = 44.1 bits (22), Expect = 0.025
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 100 cgggctccgaggaggaggagga 121
||||||||||||||||||||||
Sbjct: 98 cgggctccgaggaggaggagga 119
>gb|CD204043.1|CD204043 HS1_3_A10.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_3_A10_A012 5', mRNA sequence
Length = 632
Score = 44.1 bits (22), Expect = 0.025
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 474 gccggcatcgtgcccatcacctaccgcaaggtggcgtgcgagaggaaaggcggcatccgg 533
||||||||||||||| || ||||| | | |||| |||||| || ||| ||||| ||||||
Sbjct: 514 gccggcatcgtgcccgtcgcctacaggagggtgccgtgcgtgaagaagggcgggatccgg 573
Query: 534 tacacgatca 543
| ||| ||||
Sbjct: 574 ttcaccatca 583
>gb|CD224870.1|CD224870 CCC1_36_B01.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_36_B01_A007 5', mRNA sequence
Length = 624
Score = 44.1 bits (22), Expect = 0.025
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 100 cgggctccgaggaggaggagga 121
||||||||||||||||||||||
Sbjct: 113 cgggctccgaggaggaggagga 134
>gb|BZ691734.1|BZ691734 SP__Ba0011P16.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0011P16 3', DNA sequence
Length = 925
Score = 42.1 bits (21), Expect = 0.099
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 111 gaggaggaggacggcggcggc 131
|||||||||||||||||||||
Sbjct: 399 gaggaggaggacggcggcggc 419
>gb|CL161307.1|CL161307 104_352_10805620_116_31827_292 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10805620, DNA
sequence
Length = 311
Score = 42.1 bits (21), Expect = 0.099
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 108 gaggaggaggaggacggcggc 128
|||||||||||||||||||||
Sbjct: 206 gaggaggaggaggacggcggc 186
>gb|CW125564.1|CW125564 104_505_11112395_148_34709_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11112395, DNA
sequence
Length = 636
Score = 42.1 bits (21), Expect = 0.099
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 111 gaggaggaggacggcggcggc 131
|||||||||||||||||||||
Sbjct: 204 gaggaggaggacggcggcggc 224
>gb|CW223030.1|CW223030 104_658_11202689_148_37178_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11202689, DNA
sequence
Length = 684
Score = 42.1 bits (21), Expect = 0.099
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 108 gaggaggaggaggacggcggc 128
|||||||||||||||||||||
Sbjct: 337 gaggaggaggaggacggcggc 317
>gb|CW235943.1|CW235943 104_691_11215315_148_37401_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11215315, DNA
sequence
Length = 705
Score = 42.1 bits (21), Expect = 0.099
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 117 gaggacggcggcggcaaaaagaagc 141
||||||||||||||||| |||||||
Sbjct: 252 gaggacggcggcggcaagaagaagc 276
>gb|CW357396.1|CW357396 fsbb001f024a12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f024a12, DNA
sequence
Length = 699
Score = 42.1 bits (21), Expect = 0.099
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 111 gaggaggaggacggcggcggc 131
|||||||||||||||||||||
Sbjct: 481 gaggaggaggacggcggcggc 461
>gb|CW392760.1|CW392760 fsbb001f079i10f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f079i10, DNA
sequence
Length = 564
Score = 42.1 bits (21), Expect = 0.099
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 572 ggtgaccaacgtgggcggcgc 592
|||||||||||||||||||||
Sbjct: 544 ggtgaccaacgtgggcggcgc 564
Score = 40.1 bits (20), Expect = 0.39
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 362 gggcaccgtggtggtgacggccaccaac 389
|||| |||| ||||||||||||||||||
Sbjct: 164 gggctccgtcgtggtgacggccaccaac 191
>gb|CW785463.1|CW785463 SP__Ba0011P16.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0011P16 3', DNA sequence
Length = 660
Score = 42.1 bits (21), Expect = 0.099
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 111 gaggaggaggacggcggcggc 131
|||||||||||||||||||||
Sbjct: 369 gaggaggaggacggcggcggc 389
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 396,309
Number of Sequences: 832831
Number of extensions: 396309
Number of successful extensions: 135613
Number of sequences better than 0.5: 125
Number of HSP's better than 0.5 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 135234
Number of HSP's gapped (non-prelim): 356
length of query: 1019
length of database: 491,359,669
effective HSP length: 20
effective length of query: 999
effective length of database: 474,703,049
effective search space: 474228345951
effective search space used: 474228345951
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)