BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3184970.2.1
(1043 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BZ338038.1|BZ338038 ia92e12.b1 WGS-SbicolorF (JM107 adap... 131 1e-028
gb|CW276618.1|CW276618 104_750_11405587_148_35398_074 Sorgh... 131 1e-028
gb|CW388024.1|CW388024 fsbb001f072j20f0 Sorghum methylation... 131 1e-028
gb|CW388025.1|CW388025 fsbb001f072j20k0 Sorghum methylation... 131 1e-028
gb|CW307372.1|CW307372 104_795_11468105_148_35736_073 Sorgh... 117 2e-024
gb|CW470070.1|CW470070 fsbb001f223b16f0 Sorghum methylation... 117 2e-024
gb|CW206618.1|CW206618 104_635_11187687_148_36965_058 Sorgh... 115 8e-024
gb|CW266083.1|CW266083 104_735_11232237_148_35267_085 Sorgh... 113 3e-023
gb|BE358858.1|BE358858 DG1_32_F07.g1_A002 Dark Grown 1 (DG1... 113 3e-023
gb|CD429983.1|CD429983 ETH1_16_A10.g1_A002 Ethylene-treated... 113 3e-023
gb|CW206617.1|CW206617 104_635_11187687_116_36961_058 Sorgh... 100 5e-019
gb|CW488277.1|CW488277 fsbb001f254j12f0 Sorghum methylation... 100 5e-019
gb|BE597800.1|BE597800 PI1_65_E11.g1_A002 Pathogen induced ... 100 5e-019
gb|BE598085.1|BE598085 PI1_65_E11.b1_A002 Pathogen induced ... 100 5e-019
gb|BE367523.1|BE367523 PI1_8_E06.g1_A002 Pathogen induced 1... 84 3e-014
gb|CF760116.1|CF760116 DSAF1_55_F11.b1_A011 Drought-stresse... 84 3e-014
gb|CW307371.1|CW307371 104_795_11468105_116_35728_073 Sorgh... 78 2e-012
gb|CW438619.1|CW438619 fsbb001f156f15f0 Sorghum methylation... 78 2e-012
gb|BE594394.1|BE594394 PI1_32_H10.b2_A002 Pathogen induced ... 78 2e-012
gb|BE597906.1|BE597906 PI1_66_H02.g1_A002 Pathogen induced ... 76 7e-012
gb|BE598196.1|BE598196 PI1_66_H02.b1_A002 Pathogen induced ... 76 7e-012
gb|CW402098.1|CW402098 fsbb001f093d20k0 Sorghum methylation... 74 3e-011
gb|BE366378.1|BE366378 PI1_32_H10.g1_A002 Pathogen induced ... 68 2e-009
gb|CN129927.1|CN129927 RHOH1_38_F07.b1_A002 Acid- and alkal... 60 4e-007
gb|CN130014.1|CN130014 RHOH1_38_F07.g1_A002 Acid- and alkal... 60 4e-007
gb|CL186365.1|CL186365 104_401_10900160_116_32413_030 Sorgh... 58 2e-006
gb|CL161206.1|CL161206 104_352_10805558_116_31827_230 Sorgh... 56 7e-006
gb|CW430429.1|CW430429 fsbb001f144c05k0 Sorghum methylation... 56 7e-006
gb|CF486513.1|CF486513 POL1_38_D07.b1_A002 Pollen Sorghum b... 56 7e-006
gb|CN137269.1|CN137269 OX1_56_F03.b1_A002 Oxidatively-stres... 56 7e-006
gb|CN137353.1|CN137353 OX1_56_F03.g1_A002 Oxidatively-stres... 56 7e-006
gb|CW263590.1|CW263590 104_731_11230799_148_35217_082 Sorgh... 54 3e-005
gb|CW454488.1|CW454488 fsbb001f198p08f0 Sorghum methylation... 54 3e-005
gb|CN130255.1|CN130255 RHOH1_40_F08.b1_A002 Acid- and alkal... 50 4e-004
gb|CW066077.1|CW066077 104_313_10523499_114_30148 Sorghum m... 48 0.002
gb|CW117036.1|CW117036 104_493_11107443_148_34610_016 Sorgh... 48 0.002
gb|CW275250.1|CW275250 104_748_11404861_148_35382_055 Sorgh... 48 0.002
gb|CW430428.1|CW430428 fsbb001f144c05f0 Sorghum methylation... 48 0.002
gb|CW448428.1|CW448428 fsbb001f182a11k0 Sorghum methylation... 48 0.002
gb|CW493211.1|CW493211 fsbb001f283n22k0 Sorghum methylation... 48 0.002
gb|CN130329.1|CN130329 RHOH1_40_F08.g1_A002 Acid- and alkal... 46 0.006
gb|CW362042.1|CW362042 fsbb001f030o20k0 Sorghum methylation... 44 0.026
gb|AF402939.1|AF402939 Sorghum halepense chitinase-B gene, ... 44 0.026
gb|DQ190423.1| Sorghum halepense isolate hal4 chitinase-B (... 44 0.026
gb|DQ190424.1| Sorghum halepense isolate hal6 chitinase-B (... 44 0.026
gb|CL153826.1|CL153826 104_338_10780980_116_31370_228 Sorgh... 42 0.10
gb|CL168731.1|CL168731 104_366_10811042_116_31807_338 Sorgh... 42 0.10
gb|CW034872.1|CW034872 104_265_10502819_115_30379 Sorghum m... 42 0.10
gb|CW489486.1|CW489486 fsbb001f274h04f0 Sorghum methylation... 42 0.10
gb|BE357811.1|BE357811 DG1_22_D10.g1_A002 Dark Grown 1 (DG1... 42 0.10
gb|BG049053.1|BG049053 OV1_22_F09.g1_A002 Ovary 1 (OV1) Sor... 42 0.10
gb|BG049497.1|BG049497 OV1_20_G04.g1_A002 Ovary 1 (OV1) Sor... 42 0.10
gb|BG102665.1|BG102665 RHIZ2_35_G08.g1_A003 Rhizome2 (RHIZ2... 42 0.10
gb|CF761151.1|CF761151 DSAF1_71_G09.b1_A011 Drought-stresse... 42 0.10
gb|CF771812.1|CF771812 DSBF1_24_D06.g1_A010 Drought-stresse... 42 0.10
gb|CL160722.1|CL160722 104_351_10805186_116_31825_242 Sorgh... 40 0.40
gb|CL191359.1|CL191359 104_410_10906745_114_32534_075 Sorgh... 40 0.40
gb|CW039110.1|CW039110 104_271_10505309_115_30388 Sorghum m... 40 0.40
gb|CW056944.1|CW056944 104_298_10517953_114_30151 Sorghum m... 40 0.40
gb|CW079812.1|CW079812 104_403_10901184_114_32462_084 Sorgh... 40 0.40
gb|CW088904.1|CW088904 104_434_10948392_114_32602_096 Sorgh... 40 0.40
gb|CW098317.1|CW098317 104_464_11002941_148_34366_083 Sorgh... 40 0.40
gb|CW110064.1|CW110064 104_482_11103479_116_34509_086 Sorgh... 40 0.40
gb|CW150339.1|CW150339 104_549_11142974_116_36302_051 Sorgh... 40 0.40
gb|CW150340.1|CW150340 104_549_11142974_148_36301_051 Sorgh... 40 0.40
gb|CW188365.1|CW188365 104_608_11172991_148_36734_030 Sorgh... 40 0.40
gb|CW268636.1|CW268636 104_739_11401427_116_35308_040 Sorgh... 40 0.40
gb|CW270219.1|CW270219 104_741_11402289_148_35328_035 Sorgh... 40 0.40
gb|CW302450.1|CW302450 104_786_11464725_116_35662_085 Sorgh... 40 0.40
gb|CW318996.1|CW318996 104_811_11474252_116_35881_074 Sorgh... 40 0.40
gb|CW324492.1|CW324492 104_819_11477191_148_35910_030 Sorgh... 40 0.40
gb|CW325351.1|CW325351 104_820_11477646_148_35931_027 Sorgh... 40 0.40
gb|CW357974.1|CW357974 fsbb001f024n22k0 Sorghum methylation... 40 0.40
gb|CW363965.1|CW363965 fsbb001f035m22f0 Sorghum methylation... 40 0.40
gb|CW365833.1|CW365833 fsbb001f038i18k0 Sorghum methylation... 40 0.40
gb|CW390531.1|CW390531 fsbb001f076d16f0 Sorghum methylation... 40 0.40
gb|CW400945.1|CW400945 fsbb001f091i05f0 Sorghum methylation... 40 0.40
gb|CW405242.1|CW405242 fsbb001f097l13f0 Sorghum methylation... 40 0.40
gb|CW409994.1|CW409994 fsbb001f104i22f0 Sorghum methylation... 40 0.40
gb|CW437319.1|CW437319 fsbb001f154g03k0 Sorghum methylation... 40 0.40
gb|AW680953.1|AW680953 WS1_9_A06.b1_A002 Water-stressed 1 (... 40 0.40
gb|AW745790.1|AW745790 WS1_37_H11.b1_A002 Water-stressed 1 ... 40 0.40
gb|AW745819.1|AW745819 WS1_37_H11.g1_A002 Water-stressed 1 ... 40 0.40
gb|AW746018.1|AW746018 WS1_38_H11.g1_A002 Water-stressed 1 ... 40 0.40
gb|AW746695.1|AW746695 WS1_54_E02.g1_A002 Water-stressed 1 ... 40 0.40
gb|AW922735.1|AW922735 DG1_45_B06.g1_A002 Dark Grown 1 (DG1... 40 0.40
gb|AW922776.1|AW922776 DG1_46_C01.g1_A002 Dark Grown 1 (DG1... 40 0.40
gb|AW924229.1|AW924229 WS1_51_H04.b1_A002 Water-stressed 1 ... 40 0.40
gb|AW924422.1|AW924422 WS1_69_C06.b1_A002 Water-stressed 1 ... 40 0.40
gb|BE359997.1|BE359997 DG1_60_H07.g2_A002 Dark Grown 1 (DG1... 40 0.40
gb|BE363379.1|BE363379 WS1_62_C05.g1_A002 Water-stressed 1 ... 40 0.40
gb|BE363714.1|BE363714 WS1_69_C06.g2_A002 Water-stressed 1 ... 40 0.40
gb|BE918012.1|BE918012 OV1_8_G11.g1_A002 Ovary 1 (OV1) Sorg... 40 0.40
gb|BE918591.1|BE918591 OV1_8_G11.b1_A002 Ovary 1 (OV1) Sorg... 40 0.40
gb|BG101749.1|BG101749 EM1_5_G10.b1_A002 Embryo 1 (EM1) Sor... 40 0.40
gb|BG463695.1|BG463695 EM1_50_H02.g1_A002 Embryo 1 (EM1) So... 40 0.40
gb|BG464391.1|BG464391 EM1_69_B11.g1_A002 Embryo 1 (EM1) So... 40 0.40
gb|BG556500.1|BG556500 EM1_37_H12.g1_A002 Embryo 1 (EM1) So... 40 0.40
gb|CD220272.1|CD220272 CCC1_66_G11.b1_A007 Callus culture/c... 40 0.40
gb|CD220455.1|CD220455 CCC1_67_F06.b1_A007 Callus culture/c... 40 0.40
gb|CD220480.1|CD220480 CCC1_67_F06.g1_A007 Callus culture/c... 40 0.40
gb|CD220568.1|CD220568 CCC1_68_B04.b1_A007 Callus culture/c... 40 0.40
gb|CD220708.1|CD220708 CCC1_68_C10.g1_A007 Callus culture/c... 40 0.40
gb|CD221392.1|CD221392 CCC1_54_C04.b1_A007 Callus culture/c... 40 0.40
gb|CD221556.1|CD221556 CCC1_55_F09.g1_A007 Callus culture/c... 40 0.40
gb|CD221995.1|CD221995 CCC1_1_C09.b1_A007 Callus culture/ce... 40 0.40
gb|CD222029.1|CD222029 CCC1_1_C09.g1_A007 Callus culture/ce... 40 0.40
gb|CD222353.1|CD222353 CCC1_21_F09.b1_A007 Callus culture/c... 40 0.40
gb|CD222724.1|CD222724 CCC1_23_G10.g1_A007 Callus culture/c... 40 0.40
gb|CD222883.1|CD222883 CCC1_24_C04.g1_A007 Callus culture/c... 40 0.40
gb|CD222930.1|CD222930 CCC1_25_F06.b1_A007 Callus culture/c... 40 0.40
gb|CD223041.1|CD223041 CCC1_25_F06.g1_A007 Callus culture/c... 40 0.40
gb|CD223155.1|CD223155 CCC1_26_G01.b1_A007 Callus culture/c... 40 0.40
gb|CD223183.1|CD223183 CCC1_26_G01.g1_A007 Callus culture/c... 40 0.40
gb|CD223234.1|CD223234 CCC1_26_D09.g1_A007 Callus culture/c... 40 0.40
gb|CD223269.1|CD223269 CCC1_27_E04.b1_A007 Callus culture/c... 40 0.40
gb|CD223379.1|CD223379 CCC1_27_E04.g1_A007 Callus culture/c... 40 0.40
gb|CD223848.1|CD223848 CCC1_30_F03.g1_A007 Callus culture/c... 40 0.40
gb|CD224094.1|CD224094 CCC1_32_C12.b1_A007 Callus culture/c... 40 0.40
gb|CD224145.1|CD224145 CCC1_32_A09.b1_A007 Callus culture/c... 40 0.40
gb|CD225586.1|CD225586 CCC1_40_H10.b1_A007 Callus culture/c... 40 0.40
gb|CD225895.1|CD225895 CCC1_42_B03.b1_A007 Callus culture/c... 40 0.40
gb|CD226332.1|CD226332 CCC1_45_F08.b1_A007 Callus culture/c... 40 0.40
gb|CD226424.1|CD226424 CCC1_45_F08.g1_A007 Callus culture/c... 40 0.40
gb|CD226496.1|CD226496 CCC1_46_E08.b1_A007 Callus culture/c... 40 0.40
gb|CD226602.1|CD226602 CCC1_46_E08.g1_A007 Callus culture/c... 40 0.40
gb|CD226631.1|CD226631 CCC1_47_H05.b1_A007 Callus culture/c... 40 0.40
gb|CD226725.1|CD226725 CCC1_47_H05.g1_A007 Callus culture/c... 40 0.40
gb|CD226807.1|CD226807 CCC1_48_C11.b1_A007 Callus culture/c... 40 0.40
gb|CD227445.1|CD227445 CCC1_51_E06.g1_A007 Callus culture/c... 40 0.40
gb|CD227568.1|CD227568 CCC1_52_A02.b1_A007 Callus culture/c... 40 0.40
gb|CD227591.1|CD227591 CCC1_52_A02.g1_A007 Callus culture/c... 40 0.40
gb|CD227763.1|CD227763 CCC1_53_C09.g1_A007 Callus culture/c... 40 0.40
gb|CD227859.1|CD227859 CCC1_56_F04.b1_A007 Callus culture/c... 40 0.40
gb|CD228140.1|CD228140 CCC1_6_E03.b1_A007 Callus culture/ce... 40 0.40
gb|CD228493.1|CD228493 CCC1_8_E11.b1_A007 Callus culture/ce... 40 0.40
gb|CD228603.1|CD228603 CCC1_8_E11.g1_A007 Callus culture/ce... 40 0.40
gb|CD228687.1|CD228687 CCC1_9_D03.b1_A007 Callus culture/ce... 40 0.40
gb|CD229356.1|CD229356 CCC1_14_A10.g1_A007 Callus culture/c... 40 0.40
gb|CD229358.1|CD229358 CCC1_14_E11.g1_A007 Callus culture/c... 40 0.40
gb|CD229477.1|CD229477 CCC1_16_C07.b1_A007 Callus culture/c... 40 0.40
gb|CD229697.1|CD229697 CCC1_18_D08.g1_A007 Callus culture/c... 40 0.40
gb|CD423411.1|CD423411 SA1_23_C09.b1_A002 Salicylic acid-tr... 40 0.40
gb|CD423525.1|CD423525 SA1_23_C09.g1_A002 Salicylic acid-tr... 40 0.40
gb|CD432114.1|CD432114 ETH1_26_H07.b1_A002 Ethylene-treated... 40 0.40
gb|CD432211.1|CD432211 ETH1_26_H07.g1_A002 Ethylene-treated... 40 0.40
gb|CD464022.1|CD464022 ETH1_48_G10.b1_A002 Ethylene-treated... 40 0.40
gb|CD464127.1|CD464127 ETH1_48_G10.g1_A002 Ethylene-treated... 40 0.40
gb|CF486597.1|CF486597 POL1_38_D07.g1_A002 Pollen Sorghum b... 40 0.40
gb|CN132942.1|CN132942 OX1_9_D11.b1_A002 Oxidatively-stress... 40 0.40
gb|CN133023.1|CN133023 OX1_9_D11.g1_A002 Oxidatively-stress... 40 0.40
gb|CN134927.1|CN134927 OX1_29_A09.g1_A002 Oxidatively-stres... 40 0.40
gb|CN134928.1|CN134928 OX1_29_A10.g1_A002 Oxidatively-stres... 40 0.40
gb|CN135214.1|CN135214 OX1_31_G02.b1_A002 Oxidatively-stres... 40 0.40
gb|CN135290.1|CN135290 OX1_31_G02.g1_A002 Oxidatively-stres... 40 0.40
gb|CN151360.1|CN151360 WOUND1_75_B02.b1_A002 Wounded leaves... 40 0.40
gb|CN151443.1|CN151443 WOUND1_75_B02.g1_A002 Wounded leaves... 40 0.40
gb|CX610007.1|CX610007 ANR1_16_C10.b1_A002 Anaerobic roots ... 40 0.40
gb|CX610094.1|CX610094 ANR1_16_C10.g1_A002 Anaerobic roots ... 40 0.40
gb|CX613448.1|CX613448 GABR1_8_E12.b1_A002 GA- or brassinol... 40 0.40
gb|CX613534.1|CX613534 GABR1_8_E12.g1_A002 GA- or brassinol... 40 0.40
gb|CX616381.1|CX616381 GABR1_27_C09.g1_A002 GA- or brassino... 40 0.40
gb|AF402938.1|AF402938 Sorghum arundinaceum chitinase-B gen... 40 0.40
gb|AY047607.1| Sorghum bicolor chitinase-B mRNA, partial cds 40 0.40
gb|AY047608.1| Sorghum bicolor chitinase-B1 mRNA, complete cds 40 0.40
gb|DQ190422.1| Sorghum halepense isolate hal3 chitinase-B (... 40 0.40
>gb|BZ338038.1|BZ338038 ia92e12.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ia92e12 5', DNA sequence
Length = 608
Score = 131 bits (66), Expect = 1e-028
Identities = 81/86 (94%)
Strand = Plus / Plus
Query: 593 cctccccggccggcccgtagttgtagttgtaggagagctggatgggcccgcggccgaagt 652
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 380 cctccccggcgggcccgtagttgtagttgtaggagatctggatgggcccgcggccgtagt 439
Query: 653 acttcttgccggcgacgcacggccac 678
||||||| |||||| |||||||||||
Sbjct: 440 acttcttcccggcggcgcacggccac 465
Score = 125 bits (63), Expect = 9e-027
Identities = 132/155 (85%)
Strand = Plus / Plus
Query: 378 gccgttgatgatgttggtgatgacgccgtagcccggaagcctccccgcggccttgtcggc 437
|||||||||||||||||||| |||||| || ||||| ||||| || ||||| |||||||
Sbjct: 168 gccgttgatgatgttggtgacgacgccataccccggcagcctgccggcggcggtgtcggc 227
Query: 438 ggccgagggggtccactgctcggtggccacgtcgtggcacgacggcttgggcggctgcgc 497
| ||| || | ||||||| | ||| | ||| |||||||||||||||||||||||||||
Sbjct: 228 aggcgacggcgcccactgccccgtgacgacggcgtggcacgacggcttgggcggctgcgg 287
Query: 498 cgtcatccagaaccagatggccgtcttgaaggaga 532
||||||||||||||||| ||| |||| ||| ||||
Sbjct: 288 cgtcatccagaaccagacggcggtctcgaacgaga 322
Score = 61.9 bits (31), Expect = 1e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 724 ttctcctccttgtagcagtagccccaggtgaaggcgccgtcgggcgc 770
|||||||||||||||||||||||||||| | ||| |||||||||||
Sbjct: 514 ttctcctccttgtagcagtagccccaggcgtagggcccgtcgggcgc 560
Score = 61.9 bits (31), Expect = 1e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 249 gctgttgaagggcctctggttgtagcagtccaagttgtcgccgtagctgatgccaaggat 308
||||||||| |||||||||||| |||||||| ||||| ||||||||| | ||||| |
Sbjct: 36 gctgttgaatggcctctggttggcgcagtccacgttgttgccgtagctaaccccaagcaa 95
Query: 309 gtcgcagtagc 319
|||||||||||
Sbjct: 96 gtcgcagtagc 106
>gb|CW276618.1|CW276618 104_750_11405587_148_35398_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11405587, DNA
sequence
Length = 582
Score = 131 bits (66), Expect = 1e-028
Identities = 81/86 (94%)
Strand = Plus / Plus
Query: 593 cctccccggccggcccgtagttgtagttgtaggagagctggatgggcccgcggccgaagt 652
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 32 cctccccggcgggcccgtagttgtagttgtaggagatctggatgggcccgcggccgtagt 91
Query: 653 acttcttgccggcgacgcacggccac 678
||||||| |||||| |||||||||||
Sbjct: 92 acttcttcccggcggcgcacggccac 117
Score = 93.7 bits (47), Expect = 3e-017
Identities = 155/191 (81%)
Strand = Plus / Plus
Query: 724 ttctcctccttgtagcagtagccccaggtgaaggcgccgtcgggcgcgttcggccagccg 783
|||||||||||||||||||||||||||| | ||| ||||||||||| || ||| |||
Sbjct: 166 ttctcctccttgtagcagtagccccaggcgtagggcccgtcgggcgccgacgcccacccg 225
Query: 784 cccgtggtctcatgccccgtctgccccaagaacgcggcgagctcgcgcttctggacctcc 843
||||| ||||| ||| |||||| ||| |||||| || | ||||||||| ||| | ||
Sbjct: 226 cccgtcgtctcgtgcgatgtctgcgccaggaacgccgccacctcgcgcttttgggcgtcg 285
Query: 844 gtgctgcccgtggtgccgaagccccggaacgcgtccgccgccgtgatgaaggcgtcgtac 903
| ||| |||||||||||||||||| |||||| || || |||| || |||||| |||
Sbjct: 286 gggctccccgtggtgccgaagcccgggaacgagttggctgccgcgacgaaggccgagtag 345
Query: 904 gtgtagaagcc 914
|||||||||||
Sbjct: 346 gtgtagaagcc 356
>gb|CW388024.1|CW388024 fsbb001f072j20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f072j20, DNA
sequence
Length = 694
Score = 131 bits (66), Expect = 1e-028
Identities = 81/86 (94%)
Strand = Plus / Minus
Query: 593 cctccccggccggcccgtagttgtagttgtaggagagctggatgggcccgcggccgaagt 652
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 604 cctccccggcgggcccgtagttgtagttgtaggagatctggatgggcccgcggccgtagt 545
Query: 653 acttcttgccggcgacgcacggccac 678
||||||| |||||| |||||||||||
Sbjct: 544 acttcttcccggcggcgcacggccac 519
Score = 93.7 bits (47), Expect = 3e-017
Identities = 155/191 (81%)
Strand = Plus / Minus
Query: 724 ttctcctccttgtagcagtagccccaggtgaaggcgccgtcgggcgcgttcggccagccg 783
|||||||||||||||||||||||||||| | ||| ||||||||||| || ||| |||
Sbjct: 470 ttctcctccttgtagcagtagccccaggcgtagggcccgtcgggcgccgacgcccacccg 411
Query: 784 cccgtggtctcatgccccgtctgccccaagaacgcggcgagctcgcgcttctggacctcc 843
||||| ||||| ||| |||||| ||| |||||| || | ||||||||| ||| | ||
Sbjct: 410 cccgtcgtctcgtgcgatgtctgcgccaggaacgccgccacctcgcgcttttgggcgtcg 351
Query: 844 gtgctgcccgtggtgccgaagccccggaacgcgtccgccgccgtgatgaaggcgtcgtac 903
| ||| |||||||||||||||||| |||||| || || |||| || |||||| |||
Sbjct: 350 gggctccccgtggtgccgaagcccgggaacgagttggctgccgcgacgaaggccgagtag 291
Query: 904 gtgtagaagcc 914
|||||||||||
Sbjct: 290 gtgtagaagcc 280
>gb|CW388025.1|CW388025 fsbb001f072j20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f072j20, DNA
sequence
Length = 740
Score = 131 bits (66), Expect = 1e-028
Identities = 81/86 (94%)
Strand = Plus / Plus
Query: 593 cctccccggccggcccgtagttgtagttgtaggagagctggatgggcccgcggccgaagt 652
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 389 cctccccggcgggcccgtagttgtagttgtaggagatctggatgggcccgcggccgtagt 448
Query: 653 acttcttgccggcgacgcacggccac 678
||||||| |||||| |||||||||||
Sbjct: 449 acttcttcccggcggcgcacggccac 474
Score = 125 bits (63), Expect = 9e-027
Identities = 132/155 (85%)
Strand = Plus / Plus
Query: 378 gccgttgatgatgttggtgatgacgccgtagcccggaagcctccccgcggccttgtcggc 437
|||||||||||||||||||| |||||| || ||||| ||||| || ||||| |||||||
Sbjct: 177 gccgttgatgatgttggtgacgacgccataccccggcagcctgccggcggcggtgtcggc 236
Query: 438 ggccgagggggtccactgctcggtggccacgtcgtggcacgacggcttgggcggctgcgc 497
| ||| || | ||||||| | ||| | ||| |||||||||||||||||||||||||||
Sbjct: 237 aggcgacggcgcccactgccccgtgacgacggcgtggcacgacggcttgggcggctgcgg 296
Query: 498 cgtcatccagaaccagatggccgtcttgaaggaga 532
||||||||||||||||| ||| |||| ||| ||||
Sbjct: 297 cgtcatccagaaccagacggcggtctcgaacgaga 331
Score = 93.7 bits (47), Expect = 3e-017
Identities = 155/191 (81%)
Strand = Plus / Plus
Query: 724 ttctcctccttgtagcagtagccccaggtgaaggcgccgtcgggcgcgttcggccagccg 783
|||||||||||||||||||||||||||| | ||| ||||||||||| || ||| |||
Sbjct: 523 ttctcctccttgtagcagtagccccaggcgtagggcccgtcgggcgccgacgcccacccg 582
Query: 784 cccgtggtctcatgccccgtctgccccaagaacgcggcgagctcgcgcttctggacctcc 843
||||| ||||| ||| |||||| ||| |||||| || | ||||||||| ||| | ||
Sbjct: 583 cccgtcgtctcgtgcgatgtctgcgccaggaacgccgccacctcgcgcttttgggcgtcg 642
Query: 844 gtgctgcccgtggtgccgaagccccggaacgcgtccgccgccgtgatgaaggcgtcgtac 903
| ||| |||||||||||||||||| |||||| || || |||| || |||||| |||
Sbjct: 643 gggctccccgtggtgccgaagcccgggaacgagttggctgccgcgacgaaggccgagtag 702
Query: 904 gtgtagaagcc 914
|||||||||||
Sbjct: 703 gtgtagaagcc 713
Score = 61.9 bits (31), Expect = 1e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 249 gctgttgaagggcctctggttgtagcagtccaagttgtcgccgtagctgatgccaaggat 308
||||||||| |||||||||||| |||||||| ||||| ||||||||| | ||||| |
Sbjct: 45 gctgttgaatggcctctggttggcgcagtccacgttgttgccgtagctaaccccaagcaa 104
Query: 309 gtcgcagtagc 319
|||||||||||
Sbjct: 105 gtcgcagtagc 115
>gb|CW307372.1|CW307372 104_795_11468105_148_35736_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11468105, DNA
sequence
Length = 603
Score = 117 bits (59), Expect = 2e-024
Identities = 116/135 (85%)
Strand = Plus / Minus
Query: 378 gccgttgatgatgttggtgatgacgccgtagcccggaagcctccccgcggccttgtcggc 437
|||||||||||||||||||| |||||| || ||||| | |||||||||||| |||| ||
Sbjct: 480 gccgttgatgatgttggtgacgacgccataccccggcaacctccccgcggcgatgtcagc 421
Query: 438 ggccgagggggtccactgctcggtggccacgtcgtggcacgacggcttgggcggctgcgc 497
||||| || ||||||||| | || ||||||||||||||||||||||||| |||||
Sbjct: 420 tgccgacggcgtccactgccccgtcatgacgtcgtggcacgacggcttgggcgactgcgg 361
Query: 498 cgtcatccagaacca 512
|||||||||||||||
Sbjct: 360 cgtcatccagaacca 346
Score = 111 bits (56), Expect = 1e-022
Identities = 101/116 (87%)
Strand = Plus / Minus
Query: 724 ttctcctccttgtagcagtagccccaggtgaaggcgccgtcgggcgcgttcggccagccg 783
|||||||||||| ||||||||||||||| | |||||||||||||||| ||| ||| |||
Sbjct: 143 ttctcctccttgaagcagtagccccaggcgtaggcgccgtcgggcgccgtcgcccacccg 84
Query: 784 cccgtggtctcatgccccgtctgccccaagaacgcggcgagctcgcgcttctggac 839
||||| ||||| ||| ||||||| ||| |||||| || |||||||||||||||||
Sbjct: 83 cccgtcgtctcgtgcgacgtctgcgccaggaacgccgccagctcgcgcttctggac 28
Score = 109 bits (55), Expect = 5e-022
Identities = 76/83 (91%)
Strand = Plus / Minus
Query: 598 ccggccggcccgtagttgtagttgtaggagagctggatgggcccgcggccgaagtacttc 657
||||| || |||||||||||||||||||||| ||||||||| ||||||||| ||||||||
Sbjct: 266 ccggcggggccgtagttgtagttgtaggagatctggatgggtccgcggccgtagtacttc 207
Query: 658 ttgccggcgacgcacggccactg 680
|| |||||| |||||||||||||
Sbjct: 206 ttcccggcggcgcacggccactg 184
Score = 54.0 bits (27), Expect = 3e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 273 gcagtccaagttgtcgccgtagctgatgccaaggatgtcgcagtagc 319
|||||||||||||||||| ||||||| ||||| | |||||||||||
Sbjct: 588 gcagtccaagttgtcgccatagctgaccccaagcaagtcgcagtagc 542
>gb|CW470070.1|CW470070 fsbb001f223b16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f223b16, DNA
sequence
Length = 452
Score = 117 bits (59), Expect = 2e-024
Identities = 116/135 (85%)
Strand = Plus / Plus
Query: 378 gccgttgatgatgttggtgatgacgccgtagcccggaagcctccccgcggccttgtcggc 437
|||||||||||||||||||| |||||| || ||||| | |||||||||||| |||| ||
Sbjct: 231 gccgttgatgatgttggtgacgacgccataccccggcaacctccccgcggcgatgtcagc 290
Query: 438 ggccgagggggtccactgctcggtggccacgtcgtggcacgacggcttgggcggctgcgc 497
||||| || ||||||||| | || ||||||||||||||||||||||||| |||||
Sbjct: 291 tgccgacggcgtccactgccccgtcatgacgtcgtggcacgacggcttgggcgactgcgg 350
Query: 498 cgtcatccagaacca 512
|||||||||||||||
Sbjct: 351 cgtcatccagaacca 365
Score = 77.8 bits (39), Expect = 2e-012
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 249 gctgttgaagggcctctggttgtagcagtccaagttgtcgccgtagctgatgccaaggat 308
||||||||||||| |||||||| |||||||||||||||||| ||||||| ||||| |
Sbjct: 99 gctgttgaagggcatctggttggcgcagtccaagttgtcgccatagctgaccccaagcaa 158
Query: 309 gtcgcagtagc 319
|||||||||||
Sbjct: 159 gtcgcagtagc 169
>gb|CW206618.1|CW206618 104_635_11187687_148_36965_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187687, DNA
sequence
Length = 587
Score = 115 bits (58), Expect = 8e-024
Identities = 163/198 (82%)
Strand = Plus / Minus
Query: 717 ggcgccgttctcctccttgtagcagtagccccaggtgaaggcgccgtcgggcgcgttcgg 776
|||||| | |||||||||| ||||||||||||||| | |||||||||||||||| |||
Sbjct: 532 ggcgccctgctcctccttgaagcagtagccccaggcgtaggcgccgtcgggcgccgtcgc 473
Query: 777 ccagccgcccgtggtctcatgccccgtctgccccaagaacgcggcgagctcgcgcttctg 836
||| |||||||| ||||| ||| || || | | |||||| || |||||||| |||||
Sbjct: 472 ccacccgcccgtcgtctcgtgcgaggtttgggcgaggaacgccgccagctcgcgtttctg 413
Query: 837 gacctccgtgctgcccgtggtgccgaagccccggaacgcgtccgccgccgtgatgaaggc 896
| || | || ||||||||||||||||||| ||||||||| ||||||| |||||||||
Sbjct: 412 ggtgtcggcgccgcccgtggtgccgaagcccgggaacgcgttggccgccgcgatgaaggc 353
Query: 897 gtcgtacgtgtagaagcc 914
| ||| |||||||||||
Sbjct: 352 ggagtaggtgtagaagcc 335
>gb|CW266083.1|CW266083 104_735_11232237_148_35267_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11232237, DNA
sequence
Length = 662
Score = 113 bits (57), Expect = 3e-023
Identities = 131/153 (85%), Gaps = 2/153 (1%)
Strand = Plus / Minus
Query: 378 gccgttgatgatgttggtgatgacgccgtagcccggaagcctccccgcggccttgtcggc 437
||||||||||||||||||| | ||||| || || || |||||||||||||| |||| |
Sbjct: 472 gccgttgatgatgttggtggtcacgccatacccggggagcctccccgcggcgcggtcgtc 413
Query: 438 ggccgagggggtcca-ctgctcggtggccacgtcgtggcacgacggcttgggcggctgcg 496
||| ||||| ||||| |||| |||| ||| |||||||||||||||| |||| |||||
Sbjct: 412 ggcggagggcgtccagctgc-cggtcatgacggcgtggcacgacggcttcggcgactgcg 354
Query: 497 ccgtcatccagaaccagatggccgtcttgaagg 529
||||||||||||||||||||||||||||||||
Sbjct: 353 gcgtcatccagaaccagatggccgtcttgaagg 321
>gb|BE358858.1|BE358858 DG1_32_F07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 655
Score = 113 bits (57), Expect = 3e-023
Identities = 131/153 (85%), Gaps = 2/153 (1%)
Strand = Plus / Minus
Query: 378 gccgttgatgatgttggtgatgacgccgtagcccggaagcctccccgcggccttgtcggc 437
||||||||||||||||||| | ||||| || || || |||||||||||||| |||| |
Sbjct: 308 gccgttgatgatgttggtggtcacgccatacccggggagcctccccgcggcgcggtcgtc 249
Query: 438 ggccgagggggtcca-ctgctcggtggccacgtcgtggcacgacggcttgggcggctgcg 496
||| ||||| ||||| |||| |||| ||| |||||||||||||||| |||| |||||
Sbjct: 248 ggcggagggcgtccagctgc-cggtcatgacggcgtggcacgacggcttcggcgactgcg 190
Query: 497 ccgtcatccagaaccagatggccgtcttgaagg 529
||||||||||||||||||||||||||||||||
Sbjct: 189 gcgtcatccagaaccagatggccgtcttgaagg 157
>gb|CD429983.1|CD429983 ETH1_16_A10.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_16_A10_A002 5', mRNA sequence
Length = 693
Score = 113 bits (57), Expect = 3e-023
Identities = 131/153 (85%), Gaps = 2/153 (1%)
Strand = Plus / Minus
Query: 378 gccgttgatgatgttggtgatgacgccgtagcccggaagcctccccgcggccttgtcggc 437
||||||||||||||||||| | ||||| || || || |||||||||||||| |||| |
Sbjct: 689 gccgttgatgatgttggtggtcacgccatacccggggagcctccccgcggcgcggtcgtc 630
Query: 438 ggccgagggggtcca-ctgctcggtggccacgtcgtggcacgacggcttgggcggctgcg 496
||| ||||| ||||| |||| |||| ||| |||||||||||||||| |||| |||||
Sbjct: 629 ggcggagggcgtccagctgc-cggtcatgacggcgtggcacgacggcttcggcgactgcg 571
Query: 497 ccgtcatccagaaccagatggccgtcttgaagg 529
||||||||||||||||||||||||||||||||
Sbjct: 570 gcgtcatccagaaccagatggccgtcttgaagg 538
>gb|CW206617.1|CW206617 104_635_11187687_116_36961_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187687, DNA
sequence
Length = 639
Score = 99.6 bits (50), Expect = 5e-019
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 607 ccgtagttgtagttgtaggagagctggatgggcccgcggccgaagtacttcttgccggcg 666
|||||||||||||||||||||| ||||||||| || |||||| |||||||||| ||||||
Sbjct: 407 ccgtagttgtagttgtaggagatctggatgggtccacggccgtagtacttcttcccggcg 466
Query: 667 acgcacggccactg 680
|||||||||||||
Sbjct: 467 gcgcacggccactg 480
Score = 83.8 bits (42), Expect = 3e-014
Identities = 167/208 (80%), Gaps = 3/208 (1%)
Strand = Plus / Plus
Query: 360 gcctttgccgcactcgatgccg---ttgatgatgttggtgatgacgccgtagcccggaag 416
||||||||||||||||| ||| ||||||||||| |||| || || || ||||| |
Sbjct: 163 gcctttgccgcactcgaggccaccattgatgatgttagtgacaacaccataccccggcaa 222
Query: 417 cctccccgcggccttgtcggcggccgagggggtccactgctcggtggccacgtcgtggca 476
|||||||||||| |||| || |||| || |||||||| |||| ||| |||||||
Sbjct: 223 cctccccgcggcggtgtcagctcccgacggcgtccactggccggtcatgacggcgtggca 282
Query: 477 cgacggcttgggcggctgcgccgtcatccagaaccagatggccgtcttgaaggagatgac 536
|||||||||||||| ||||| ||||||||||||||| | ||||||| ||| || | |
Sbjct: 283 cgacggcttgggcgactgcggcgtcatccagaaccacaccgccgtctcgaacgacacggt 342
Query: 537 ggcgtccgacgccaccagctccgggttg 564
| ||||||||||||||| |||||||||
Sbjct: 343 cgggtccgacgccaccaggtccgggttg 370
Score = 77.8 bits (39), Expect = 2e-012
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 249 gctgttgaagggcctctggttgtagcagtccaagttgtcgccgtagctgatgccaaggat 308
||||||||||||| |||||||| |||||||||||| ||||||||||||| ||||| |
Sbjct: 52 gctgttgaagggcttctggttggcgcagtccaagttatcgccgtagctgacaccaagcaa 111
Query: 309 gtcgcagtagc 319
|||||||||||
Sbjct: 112 gtcgcagtagc 122
Score = 75.8 bits (38), Expect = 7e-012
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 717 ggcgccgttctcctccttgtagcagtagccccaggtgaaggcgccgtcgggcgcgttcgg 776
|||||| | |||||||||| ||||||||||||||| | |||||||||||||||| |||
Sbjct: 514 ggcgccctgctcctccttgaagcagtagccccaggcgtaggcgccgtcgggcgccgtcgc 573
Query: 777 ccagccgcccgtggtctc 794
||| |||||||| |||||
Sbjct: 574 ccacccgcccgtcgtctc 591
>gb|CW488277.1|CW488277 fsbb001f254j12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f254j12, DNA
sequence
Length = 507
Score = 99.6 bits (50), Expect = 5e-019
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 607 ccgtagttgtagttgtaggagagctggatgggcccgcggccgaagtacttcttgccggcg 666
|||||||||||||||||||||| ||||||||| || |||||| |||||||||| ||||||
Sbjct: 225 ccgtagttgtagttgtaggagatctggatgggtccacggccgtagtacttcttcccggcg 284
Query: 667 acgcacggccactg 680
|||||||||||||
Sbjct: 285 gcgcacggccactg 298
Score = 95.6 bits (48), Expect = 8e-018
Identities = 144/176 (81%)
Strand = Plus / Plus
Query: 717 ggcgccgttctcctccttgtagcagtagccccaggtgaaggcgccgtcgggcgcgttcgg 776
|||||| | |||||||||| ||||||||||||||| | |||||||||||||||| |||
Sbjct: 332 ggcgccctgctcctccttgaagcagtagccccaggcgtaggcgccgtcgggcgccgtcgc 391
Query: 777 ccagccgcccgtggtctcatgccccgtctgccccaagaacgcggcgagctcgcgcttctg 836
||| |||||||| ||||| ||| || || | | |||||| || |||||||| |||||
Sbjct: 392 ccacccgcccgtcgtctcgtgcgaggtttgggcgaggaacgccgccagctcgcgtttctg 451
Query: 837 gacctccgtgctgcccgtggtgccgaagccccggaacgcgtccgccgccgtgatga 892
| || | || ||||||||||||||||||| ||||||||| ||||||| |||||
Sbjct: 452 ggtgtcggcgccgcccgtggtgccgaagcccgggaacgcgttggccgccgcgatga 507
Score = 77.8 bits (39), Expect = 2e-012
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 470 cgtggcacgacggcttgggcggctgcgccgtcatccagaaccagatggccgtcttgaagg 529
||||||||||||||||||||| ||||| ||||||||||||||| | ||||||| ||| |
Sbjct: 94 cgtggcacgacggcttgggcgactgcggcgtcatccagaaccacaccgccgtctcgaacg 153
Query: 530 agatgacggcgtccgacgccaccagctccgggttg 564
| | | | ||||||||||||||| |||||||||
Sbjct: 154 acacggtcgggtccgacgccaccaggtccgggttg 188
>gb|BE597800.1|BE597800 PI1_65_E11.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 600
Score = 99.6 bits (50), Expect = 5e-019
Identities = 68/74 (91%)
Strand = Plus / Minus
Query: 607 ccgtagttgtagttgtaggagagctggatgggcccgcggccgaagtacttcttgccggcg 666
|||||||||||||||||||||| ||||||||| || |||||| |||||||||| ||||||
Sbjct: 181 ccgtagttgtagttgtaggagatctggatgggtccacggccgtagtacttcttcccggcg 122
Query: 667 acgcacggccactg 680
|||||||||||||
Sbjct: 121 gcgcacggccactg 108
Score = 83.8 bits (42), Expect = 3e-014
Identities = 167/208 (80%), Gaps = 3/208 (1%)
Strand = Plus / Minus
Query: 360 gcctttgccgcactcgatgccg---ttgatgatgttggtgatgacgccgtagcccggaag 416
||||||||||||||||| ||| ||||||||||| |||| || || || ||||| |
Sbjct: 425 gcctttgccgcactcgaggccaccattgatgatgttagtgacaacaccataccccggcaa 366
Query: 417 cctccccgcggccttgtcggcggccgagggggtccactgctcggtggccacgtcgtggca 476
|||||||||||| |||| || |||| || |||||||| |||| ||| |||||||
Sbjct: 365 cctccccgcggcggtgtcagctcccgacggcgtccactggccggtcatgacggcgtggca 306
Query: 477 cgacggcttgggcggctgcgccgtcatccagaaccagatggccgtcttgaaggagatgac 536
|||||||||||||| ||||| ||||||||||||||| | ||||||| ||| || | |
Sbjct: 305 cgacggcttgggcgactgcggcgtcatccagaaccacaccgccgtctcgaacgacacggt 246
Query: 537 ggcgtccgacgccaccagctccgggttg 564
| ||||||||||||||| |||||||||
Sbjct: 245 cgggtccgacgccaccaggtccgggttg 218
Score = 77.8 bits (39), Expect = 2e-012
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 249 gctgttgaagggcctctggttgtagcagtccaagttgtcgccgtagctgatgccaaggat 308
||||||||||||| |||||||| |||||||||||| ||||||||||||| ||||| |
Sbjct: 536 gctgttgaagggcttctggttggcgcagtccaagttatcgccgtagctgacaccaagcaa 477
Query: 309 gtcgcagtagc 319
|||||||||||
Sbjct: 476 gtcgcagtagc 466
Score = 56.0 bits (28), Expect = 7e-006
Identities = 61/72 (84%)
Strand = Plus / Minus
Query: 717 ggcgccgttctcctccttgtagcagtagccccaggtgaaggcgccgtcgggcgcgttcgg 776
|||||| | |||||||||| |||||||||||| | | |||||||||||||||| |||
Sbjct: 74 ggcgccctgctcctccttgaagcagtagcccccagcgtaggcgccgtcgggcgccgtcgc 15
Query: 777 ccagccgcccgt 788
||| ||||||||
Sbjct: 14 ccacccgcccgt 3
>gb|BE598085.1|BE598085 PI1_65_E11.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 632
Score = 99.6 bits (50), Expect = 5e-019
Identities = 68/74 (91%)
Strand = Plus / Minus
Query: 607 ccgtagttgtagttgtaggagagctggatgggcccgcggccgaagtacttcttgccggcg 666
|||||||||||||||||||||| ||||||||| || |||||| |||||||||| ||||||
Sbjct: 219 ccgtagttgtagttgtaggagatctggatgggtccacggccgtagtacttcttcccggcg 160
Query: 667 acgcacggccactg 680
|||||||||||||
Sbjct: 159 gcgcacggccactg 146
Score = 83.8 bits (42), Expect = 3e-014
Identities = 167/208 (80%), Gaps = 3/208 (1%)
Strand = Plus / Minus
Query: 360 gcctttgccgcactcgatgccg---ttgatgatgttggtgatgacgccgtagcccggaag 416
||||||||||||||||| ||| ||||||||||| |||| || || || ||||| |
Sbjct: 463 gcctttgccgcactcgaggccaccattgatgatgttagtgacaacaccataccccggcaa 404
Query: 417 cctccccgcggccttgtcggcggccgagggggtccactgctcggtggccacgtcgtggca 476
|||||||||||| |||| || |||| || |||||||| |||| ||| |||||||
Sbjct: 403 cctccccgcggcggtgtcagctcccgacggcgtccactggccggtcatgacggcgtggca 344
Query: 477 cgacggcttgggcggctgcgccgtcatccagaaccagatggccgtcttgaaggagatgac 536
|||||||||||||| ||||| ||||||||||||||| | ||||||| ||| || | |
Sbjct: 343 cgacggcttgggcgactgcggcgtcatccagaaccacaccgccgtctcgaacgacacggt 284
Query: 537 ggcgtccgacgccaccagctccgggttg 564
| ||||||||||||||| |||||||||
Sbjct: 283 cgggtccgacgccaccaggtccgggttg 256
Score = 77.8 bits (39), Expect = 2e-012
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 249 gctgttgaagggcctctggttgtagcagtccaagttgtcgccgtagctgatgccaaggat 308
||||||||||||| |||||||| |||||||||||| ||||||||||||| ||||| |
Sbjct: 574 gctgttgaagggcttctggttggcgcagtccaagttatcgccgtagctgacaccaagcaa 515
Query: 309 gtcgcagtagc 319
|||||||||||
Sbjct: 514 gtcgcagtagc 504
Score = 75.8 bits (38), Expect = 7e-012
Identities = 68/78 (87%)
Strand = Plus / Minus
Query: 717 ggcgccgttctcctccttgtagcagtagccccaggtgaaggcgccgtcgggcgcgttcgg 776
|||||| | |||||||||| ||||||||||||||| | |||||||||||||||| |||
Sbjct: 112 ggcgccctgctcctccttgaagcagtagccccaggcgtaggcgccgtcgggcgccgtcgc 53
Query: 777 ccagccgcccgtggtctc 794
||| |||||||| |||||
Sbjct: 52 ccacccgcccgtcgtctc 35
>gb|BE367523.1|BE367523 PI1_8_E06.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 520
Score = 83.8 bits (42), Expect = 3e-014
Identities = 167/208 (80%), Gaps = 3/208 (1%)
Strand = Plus / Minus
Query: 360 gcctttgccgcactcgatgccg---ttgatgatgttggtgatgacgccgtagcccggaag 416
||||||||||||||||| ||| ||||||||||| |||| || || || ||||| |
Sbjct: 308 gcctttgccgcactcgaggccaccattgatgatgttagtgacaacaccataccccggcaa 249
Query: 417 cctccccgcggccttgtcggcggccgagggggtccactgctcggtggccacgtcgtggca 476
|||||||||||| |||| || |||| || |||||||| |||| ||| |||||||
Sbjct: 248 cctccccgcggcggtgtcagctcccgacggcgtccactggccggtcatgacggcgtggca 189
Query: 477 cgacggcttgggcggctgcgccgtcatccagaaccagatggccgtcttgaaggagatgac 536
|||||||||||||| ||||| ||||||||||||||| | ||||||| ||| || | |
Sbjct: 188 cgacggcttgggcgactgcggcgtcatccagaaccacaccgccgtctcgaacgacacggt 129
Query: 537 ggcgtccgacgccaccagctccgggttg 564
| ||||||||||||||| |||||||||
Sbjct: 128 cgggtccgacgccaccaggtccgggttg 101
Score = 79.8 bits (40), Expect = 5e-013
Identities = 55/60 (91%)
Strand = Plus / Minus
Query: 607 ccgtagttgtagttgtaggagagctggatgggcccgcggccgaagtacttcttgccggcg 666
|||||||||||||||||||||| ||||||||| || |||||| |||||||||| ||||||
Sbjct: 64 ccgtagttgtagttgtaggagatctggatgggtccacggccgtagtacttcttcccggcg 5
Score = 77.8 bits (39), Expect = 2e-012
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 249 gctgttgaagggcctctggttgtagcagtccaagttgtcgccgtagctgatgccaaggat 308
||||||||||||| |||||||| |||||||||||| ||||||||||||| ||||| |
Sbjct: 419 gctgttgaagggcttctggttggcgcagtccaagttatcgccgtagctgacaccaagcaa 360
Query: 309 gtcgcagtagc 319
|||||||||||
Sbjct: 359 gtcgcagtagc 349
>gb|CF760116.1|CF760116 DSAF1_55_F11.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_55_F11_A011 5', mRNA sequence
Length = 527
Score = 83.8 bits (42), Expect = 3e-014
Identities = 167/208 (80%), Gaps = 3/208 (1%)
Strand = Plus / Minus
Query: 360 gcctttgccgcactcgatgccg---ttgatgatgttggtgatgacgccgtagcccggaag 416
||||||||||||||||| ||| ||||||||||| |||| || || || ||||| |
Sbjct: 272 gcctttgccgcactcgaggccaccattgatgatgttagtgacaacaccataccccggcaa 213
Query: 417 cctccccgcggccttgtcggcggccgagggggtccactgctcggtggccacgtcgtggca 476
|||||||||||| |||| || |||| || |||||||| |||| ||| |||||||
Sbjct: 212 cctccccgcggcggtgtcagctcccgacggcgtccactggccggtcatgacggcgtggca 153
Query: 477 cgacggcttgggcggctgcgccgtcatccagaaccagatggccgtcttgaaggagatgac 536
|||||||||||||| ||||| ||||||||||||||| | ||||||| ||| || | |
Sbjct: 152 cgacggcttgggcgactgcggcgtcatccagaaccacaccgccgtctcgaacgacacggt 93
Query: 537 ggcgtccgacgccaccagctccgggttg 564
| ||||||||||||||| |||||||||
Sbjct: 92 cgggtccgacgccaccaggtccgggttg 65
Score = 77.8 bits (39), Expect = 2e-012
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 249 gctgttgaagggcctctggttgtagcagtccaagttgtcgccgtagctgatgccaaggat 308
||||||||||||| |||||||| |||||||||||| ||||||||||||| ||||| |
Sbjct: 383 gctgttgaagggcttctggttggcgcagtccaagttatcgccgtagctgacaccaagcaa 324
Query: 309 gtcgcagtagc 319
|||||||||||
Sbjct: 323 gtcgcagtagc 313
Score = 48.1 bits (24), Expect = 0.002
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 607 ccgtagttgtagttgtaggagagctgga 634
|||||||||||||||||||||| |||||
Sbjct: 28 ccgtagttgtagttgtaggagatctgga 1
>gb|CW307371.1|CW307371 104_795_11468105_116_35728_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11468105, DNA
sequence
Length = 642
Score = 77.8 bits (39), Expect = 2e-012
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 249 gctgttgaagggcctctggttgtagcagtccaagttgtcgccgtagctgatgccaaggat 308
||||||||||||| |||||||| |||||||||||||||||| ||||||| ||||| |
Sbjct: 405 gctgttgaagggcatctggttggcgcagtccaagttgtcgccatagctgaccccaagcaa 464
Query: 309 gtcgcagtagc 319
|||||||||||
Sbjct: 465 gtcgcagtagc 475
Score = 75.8 bits (38), Expect = 7e-012
Identities = 89/106 (83%)
Strand = Plus / Plus
Query: 378 gccgttgatgatgttggtgatgacgccgtagcccggaagcctccccgcggccttgtcggc 437
|||||||||||||||||||| |||||| || ||||| | |||||||||||| |||| ||
Sbjct: 537 gccgttgatgatgttggtgacgacgccataccccggcaacctccccgcggcgatgtcagc 596
Query: 438 ggccgagggggtccactgctcggtggccacgtcgtggcacgacggc 483
||||| || ||||||||| | || ||||||||||||||||||
Sbjct: 597 tgccgacggcgtccactgccccgtcatgacgtcgtggcacgacggc 642
>gb|CW438619.1|CW438619 fsbb001f156f15f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f156f15, DNA
sequence
Length = 430
Score = 77.8 bits (39), Expect = 2e-012
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 249 gctgttgaagggcctctggttgtagcagtccaagttgtcgccgtagctgatgccaaggat 308
||||||||||||| |||||||| |||||||||||||||||| ||||||| ||||| |
Sbjct: 306 gctgttgaagggcatctggttggcgcagtccaagttgtcgccatagctgaccccaagcaa 365
Query: 309 gtcgcagtagc 319
|||||||||||
Sbjct: 366 gtcgcagtagc 376
>gb|BE594394.1|BE594394 PI1_32_H10.b2_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 574
Score = 77.8 bits (39), Expect = 2e-012
Identities = 129/159 (81%)
Strand = Plus / Minus
Query: 756 ggcgccgtcgggcgcgttcggccagccgcccgtggtctcatgccccgtctgccccaagaa 815
||||||||||||||| ||| ||| |||||||| ||||| ||| || || | | |||
Sbjct: 574 ggcgccgtcgggcgccgtcgcccacccgcccgtcgtctcgtgcgaggtttgggcgaggaa 515
Query: 816 cgcggcgagctcgcgcttctggacctccgtgctgcccgtggtgccgaagccccggaacgc 875
||| || |||||||| |||||| || | || ||||||||||||||||||| |||||||
Sbjct: 514 cgccgccagctcgcgtttctgggtgtcggcgccgcccgtggtgccgaagcccgggaacgc 455
Query: 876 gtccgccgccgtgatgaaggcgtcgtacgtgtagaagcc 914
|| ||||||| |||||||||| ||| |||||||||||
Sbjct: 454 gttggccgccgcgatgaaggcggagtaggtgtagaagcc 416
>gb|BE597906.1|BE597906 PI1_66_H02.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 708
Score = 75.8 bits (38), Expect = 7e-012
Identities = 71/82 (86%)
Strand = Plus / Minus
Query: 495 cgccgtcatccagaaccagatggccgtcttgaaggagatgacggcgtccgacgccaccag 554
|||||||||||||||||| | |||||||||||||| | |||| ||| | |||||||||
Sbjct: 220 cgccgtcatccagaaccacagcgccgtcttgaaggataccacggggtcggtcgccaccag 161
Query: 555 ctccgggttgctcagcaggtcc 576
||||||||| |||||||||||
Sbjct: 160 gtccgggttgttcagcaggtcc 139
Score = 56.0 bits (28), Expect = 7e-006
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 378 gccgttgatgatgttggtgatgacgccgtagcccgg 413
||||||||||||||||||||| |||||||| |||||
Sbjct: 340 gccgttgatgatgttggtgatcacgccgtaccccgg 305
>gb|BE598196.1|BE598196 PI1_66_H02.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 359
Score = 75.8 bits (38), Expect = 7e-012
Identities = 71/82 (86%)
Strand = Plus / Minus
Query: 495 cgccgtcatccagaaccagatggccgtcttgaaggagatgacggcgtccgacgccaccag 554
|||||||||||||||||| | |||||||||||||| | |||| ||| | |||||||||
Sbjct: 308 cgccgtcatccagaaccacagcgccgtcttgaaggataccacggggtcggtcgccaccag 249
Query: 555 ctccgggttgctcagcaggtcc 576
||||||||| |||||||||||
Sbjct: 248 gtccgggttgttcagcaggtcc 227
Score = 67.9 bits (34), Expect = 2e-009
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 623 aggagagctggatgggcccgcggccgaagtacttcttgccgg 664
|||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 88 aggagatctggatggggccgcggccgaagtacttcttgccgg 47
>gb|CW402098.1|CW402098 fsbb001f093d20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f093d20, DNA
sequence
Length = 275
Score = 73.8 bits (37), Expect = 3e-011
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 726 ctcctccttgtagcagtagccccaggtgaaggcgccgtcgggcgcgttcggccagccgcc 785
||||| |||| ||||||||||||||| ||||| |||||||| ||| ||||||| |||||
Sbjct: 161 ctcctgcttgaagcagtagccccaggagaagggcccgtcgggggcggtcggccacccgcc 220
Query: 786 cgtggtctc 794
|||||||||
Sbjct: 221 cgtggtctc 229
Score = 67.9 bits (34), Expect = 2e-009
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 623 aggagagctggatgggcccgcggccgaagtacttcttgccgg 664
|||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 67 aggagatctggatggggccgcggccgaagtacttcttgccgg 108
>gb|BE366378.1|BE366378 PI1_32_H10.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 454
Score = 67.9 bits (34), Expect = 2e-009
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 250 ctgttgaagggcctctggttgtagcagtccaagttgtcgccgtagctgatgccaaggatg 309
|||||||||||| |||||||| |||||||||||| |||||||| |||| ||||| | |
Sbjct: 395 ctgttgaagggcttctggttggcgcagtccaagttatcgccgtatctgacaccaagcaag 336
Query: 310 tcgcagtagc 319
||||||||||
Sbjct: 335 tcgcagtagc 326
Score = 61.9 bits (31), Expect = 1e-007
Identities = 79/95 (83%)
Strand = Plus / Minus
Query: 470 cgtggcacgacggcttgggcggctgcgccgtcatccagaaccagatggccgtcttgaagg 529
||||||||||||||||||||| ||||| ||| ||||| ||||| | ||||||| ||| |
Sbjct: 172 cgtggcacgacggcttgggcgactgcggcgttatccaaaaccacaccgccgtctcgaacg 113
Query: 530 agatgacggcgtccgacgccaccagctccgggttg 564
| | | | ||||||||||||||| |||||||||
Sbjct: 112 acacggtcgggtccgacgccaccaggtccgggttg 78
Score = 42.1 bits (21), Expect = 0.10
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 607 ccgtagttgtagttgtaggagagctggatgggcccgcggcc 647
||||| ||||||||||| |||| ||||||||| || |||||
Sbjct: 41 ccgtatttgtagttgtaagagatctggatgggtccacggcc 1
>gb|CN129927.1|CN129927 RHOH1_38_F07.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_38_F07_A002 3', mRNA sequence
Length = 809
Score = 60.0 bits (30), Expect = 4e-007
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 466 acgtcgtggcacgacggcttgggcggctgcgccgtcatccagaaccagatggccgtcttg 525
||||||||||||||||||||||||| | || |||||||||||||| | |||||||||
Sbjct: 488 acgtcgtggcacgacggcttgggcgacctcggggtcatccagaaccacagcgccgtcttg 429
Query: 526 aa 527
||
Sbjct: 428 aa 427
Score = 54.0 bits (27), Expect = 3e-005
Identities = 66/79 (83%)
Strand = Plus / Minus
Query: 601 gccggcccgtagttgtagttgtaggagagctggatgggcccgcggccgaagtacttcttg 660
||||||||||||||| |||| | || ||||||||||| || ||||| |||| || |
Sbjct: 359 gccggcccgtagttgaagttccacgacagctggatgggtccccggccatggtacgactcg 300
Query: 661 ccggcgacgcacggccact 679
|||||||||||||||||||
Sbjct: 299 ccggcgacgcacggccact 281
>gb|CN130014.1|CN130014 RHOH1_38_F07.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_38_F07_A002 5', mRNA sequence
Length = 723
Score = 60.0 bits (30), Expect = 4e-007
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 466 acgtcgtggcacgacggcttgggcggctgcgccgtcatccagaaccagatggccgtcttg 525
||||||||||||||||||||||||| | || |||||||||||||| | |||||||||
Sbjct: 679 acgtcgtggcacgacggcttgggcgacctcggggtcatccagaaccacagcgccgtcttg 620
Query: 526 aa 527
||
Sbjct: 619 aa 618
Score = 54.0 bits (27), Expect = 3e-005
Identities = 66/79 (83%)
Strand = Plus / Minus
Query: 601 gccggcccgtagttgtagttgtaggagagctggatgggcccgcggccgaagtacttcttg 660
||||||||||||||| |||| | || ||||||||||| || ||||| |||| || |
Sbjct: 550 gccggcccgtagttgaagttccacgacagctggatgggtccccggccatggtacgactcg 491
Query: 661 ccggcgacgcacggccact 679
|||||||||||||||||||
Sbjct: 490 ccggcgacgcacggccact 472
>gb|CL186365.1|CL186365 104_401_10900160_116_32413_030 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10900160, DNA
sequence
Length = 695
Score = 58.0 bits (29), Expect = 2e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 850 cccgtggtgccgaagccccggaacgcgtccgccgccgtgatgaaggcgtcgtacgtgtag 909
||||| |||||||||||| |||| | || ||||||| |||||||||| |||| ||||||
Sbjct: 648 cccgtcgtgccgaagcccgggaaggagttggccgccgcgatgaaggcggcgtaggtgtag 589
Query: 910 aagcc 914
|||||
Sbjct: 588 aagcc 584
>gb|CL161206.1|CL161206 104_352_10805558_116_31827_230 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10805558, DNA
sequence
Length = 680
Score = 56.0 bits (28), Expect = 7e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 469 tcgtggcacgacggcttgggcggctgcgccgtcatccagaacca 512
||||||||||||||||||||| | ||| |||||||||||||||
Sbjct: 157 tcgtggcacgacggcttgggccggcgcggcgtcatccagaacca 114
>gb|CW430429.1|CW430429 fsbb001f144c05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f144c05, DNA
sequence
Length = 746
Score = 56.0 bits (28), Expect = 7e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 469 tcgtggcacgacggcttgggcggctgcgccgtcatccagaacca 512
||||||||||||||||||||| | ||| |||||||||||||||
Sbjct: 433 tcgtggcacgacggcttgggccggcgcggcgtcatccagaacca 476
Score = 40.1 bits (20), Expect = 0.40
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 601 gccggcccgtagttgtagttgtaggagagctggatgggcccgcggccg 648
||||||||||||||| |||| | || ||||||||||| || ||||||
Sbjct: 559 gccggcccgtagttgaagttccacgacagctggatggggccccggccg 606
>gb|CF486513.1|CF486513 POL1_38_D07.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_38_D07_A002 3', mRNA sequence
Length = 635
Score = 56.0 bits (28), Expect = 7e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 469 tcgtggcacgacggcttgggcggctgcgccgtcatccagaacca 512
||||||||||||||||||||| | ||| |||||||||||||||
Sbjct: 137 tcgtggcacgacggcttgggccggcgcggcgtcatccagaacca 94
>gb|CN137269.1|CN137269 OX1_56_F03.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_56_F03_A002 3', mRNA sequence
Length = 599
Score = 56.0 bits (28), Expect = 7e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 469 tcgtggcacgacggcttgggcggctgcgccgtcatccagaacca 512
||||||||||||||||||||| | ||| |||||||||||||||
Sbjct: 292 tcgtggcacgacggcttgggccggcgcggcgtcatccagaacca 249
Score = 40.1 bits (20), Expect = 0.40
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 601 gccggcccgtagttgtagttgtaggagagctggatgggcccgcggccg 648
||||||||||||||| |||| | || ||||||||||| || ||||||
Sbjct: 166 gccggcccgtagttgaagttccacgacagctggatggggccccggccg 119
>gb|CN137353.1|CN137353 OX1_56_F03.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_56_F03_A002 5', mRNA sequence
Length = 805
Score = 56.0 bits (28), Expect = 7e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 469 tcgtggcacgacggcttgggcggctgcgccgtcatccagaacca 512
||||||||||||||||||||| | ||| |||||||||||||||
Sbjct: 755 tcgtggcacgacggcttgggccggcgcggcgtcatccagaacca 712
Score = 40.1 bits (20), Expect = 0.40
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 601 gccggcccgtagttgtagttgtaggagagctggatgggcccgcggccg 648
||||||||||||||| |||| | || ||||||||||| || ||||||
Sbjct: 629 gccggcccgtagttgaagttccacgacagctggatggggccccggccg 582
>gb|CW263590.1|CW263590 104_731_11230799_148_35217_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11230799, DNA
sequence
Length = 583
Score = 54.0 bits (27), Expect = 3e-005
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 601 gccggcccgtagttgtagttgtaggagagctggatgggcccgcggccgaagtacttcttg 660
||||||||||||||| |||| | || ||||||||||| || ||||| |||| || |
Sbjct: 443 gccggcccgtagttgaagttccacgacagctggatgggtccccggccatggtacgactcg 502
Query: 661 ccggcgacgcacggccact 679
|||||||||||||||||||
Sbjct: 503 ccggcgacgcacggccact 521
Score = 52.0 bits (26), Expect = 1e-004
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 466 acgtcgtggcacgacggcttgggcggctgcgccgtcatccagaaccagatggccgtcttg 525
|||||||| |||||||||||||||| | || |||||||||||||| | |||||||||
Sbjct: 314 acgtcgtgacacgacggcttgggcgacctcggggtcatccagaaccacagcgccgtcttg 373
Query: 526 aa 527
||
Sbjct: 374 aa 375
>gb|CW454488.1|CW454488 fsbb001f198p08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f198p08, DNA
sequence
Length = 772
Score = 54.0 bits (27), Expect = 3e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 378 gccgttgatgatgttggtgatgacgccgtagcccggaagcctccccgcggc 428
||||||||||||||||||| | ||||| || || || ||||||||||||||
Sbjct: 53 gccgttgatgatgttggtggtcacgccatacccggggagcctccccgcggc 3
>gb|CN130255.1|CN130255 RHOH1_40_F08.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_40_F08_A002 3', mRNA sequence
Length = 632
Score = 50.1 bits (25), Expect = 4e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 469 tcgtggcacgacggcttgggcggctgcgccgtcatccagaa 509
||||||||||||||||||||| | ||| ||||||||||||
Sbjct: 289 tcgtggcacgacggcttgggccggcgcggcgtcatccagaa 249
Score = 40.1 bits (20), Expect = 0.40
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 601 gccggcccgtagttgtagttgtaggagagctggatgggcccgcggccg 648
||||||||||||||| |||| | || ||||||||||| || ||||||
Sbjct: 163 gccggcccgtagttgaagttccacgacagctggatggggccccggccg 116
>gb|CW066077.1|CW066077 104_313_10523499_114_30148 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10523499, DNA
sequence
Length = 537
Score = 48.1 bits (24), Expect = 0.002
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 500 tcatccagaaccagatggccgtcttgaaggagatgacggcgtccgacgccaccagctccg 559
||||||||||||||| ||||||||||| | ||| |||| |||| |||||||| ||||
Sbjct: 345 tcatccagaaccagagcgccgtcttgaacgcgatcacggggtcctgcgccaccatgtccg 404
Query: 560 ggtt 563
||||
Sbjct: 405 ggtt 408
>gb|CW117036.1|CW117036 104_493_11107443_148_34610_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11107443, DNA
sequence
Length = 329
Score = 48.1 bits (24), Expect = 0.002
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 500 tcatccagaaccagatggccgtcttgaaggagatgacggcgtccgacgccaccagctccg 559
||||||||||||||| ||||||||||| | ||| |||| |||| |||||||| ||||
Sbjct: 87 tcatccagaaccagagcgccgtcttgaacgcgatcacggggtcctgcgccaccatgtccg 146
Query: 560 ggtt 563
||||
Sbjct: 147 ggtt 150
>gb|CW275250.1|CW275250 104_748_11404861_148_35382_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11404861, DNA
sequence
Length = 627
Score = 48.1 bits (24), Expect = 0.002
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 500 tcatccagaaccagatggccgtcttgaaggagatgacggcgtccgacgccaccagctccg 559
||||||||||||||| ||||||||||| | ||| |||| |||| |||||||| ||||
Sbjct: 198 tcatccagaaccagagcgccgtcttgaacgcgatcacggggtcctgcgccaccatgtccg 257
Query: 560 ggtt 563
||||
Sbjct: 258 ggtt 261
>gb|CW430428.1|CW430428 fsbb001f144c05f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f144c05, DNA
sequence
Length = 718
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 469 tcgtggcacgacggcttgggcggctgcgccgtcatccagaacca 512
||||| ||||||||||||||| | ||| |||||||||||||||
Sbjct: 670 tcgtgccacgacggcttgggccggcgcggcgtcatccagaacca 627
Score = 40.1 bits (20), Expect = 0.40
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 601 gccggcccgtagttgtagttgtaggagagctggatgggcccgcggccg 648
||||||||||||||| |||| | || ||||||||||| || ||||||
Sbjct: 544 gccggcccgtagttgaagttccacgacagctggatggggccccggccg 497
>gb|CW448428.1|CW448428 fsbb001f182a11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f182a11, DNA
sequence
Length = 633
Score = 48.1 bits (24), Expect = 0.002
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 500 tcatccagaaccagatggccgtcttgaaggagatgacggcgtccgacgccaccagctccg 559
||||||||||||||| ||||||||||| | ||| |||| |||| |||||||| ||||
Sbjct: 409 tcatccagaaccagagcgccgtcttgaacgcgatcacggggtcctgcgccaccatgtccg 468
Query: 560 ggtt 563
||||
Sbjct: 469 ggtt 472
>gb|CW493211.1|CW493211 fsbb001f283n22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f283n22, DNA
sequence
Length = 617
Score = 48.1 bits (24), Expect = 0.002
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 500 tcatccagaaccagatggccgtcttgaaggagatgacggcgtccgacgccaccagctccg 559
||||||||||||||| ||||||||||| | ||| |||| |||| |||||||| ||||
Sbjct: 8 tcatccagaaccagagcgccgtcttgaacgcgatcacggggtcctgcgccaccatgtccg 67
Query: 560 ggtt 563
||||
Sbjct: 68 ggtt 71
>gb|CN130329.1|CN130329 RHOH1_40_F08.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_40_F08_A002 5', mRNA sequence
Length = 740
Score = 46.1 bits (23), Expect = 0.006
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 474 gcacgacggcttgggcggctgcgccgtcatccagaacca 512
|||||||||||||||| | ||| |||||||||||||||
Sbjct: 740 gcacgacggcttgggccggcgcggcgtcatccagaacca 702
Score = 40.1 bits (20), Expect = 0.40
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 601 gccggcccgtagttgtagttgtaggagagctggatgggcccgcggccg 648
||||||||||||||| |||| | || ||||||||||| || ||||||
Sbjct: 619 gccggcccgtagttgaagttccacgacagctggatggggccccggccg 572
>gb|CW362042.1|CW362042 fsbb001f030o20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f030o20, DNA
sequence
Length = 627
Score = 44.1 bits (22), Expect = 0.026
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 802 gtctgccccaagaacgcggcgagctcgcgcttctggacctccgtgctgcccgtggtgccg 861
||||| || ||||| |||||||||||||||||| | |||| |||||| |||||||||
Sbjct: 235 gtctggccgaagaaggcggcgagctcgcgcttcacatcgtccgcgctgcctgtggtgccg 294
Query: 862 aa 863
||
Sbjct: 295 aa 296
>gb|AF402939.1|AF402939 Sorghum halepense chitinase-B gene, partial cds
Length = 922
Score = 44.1 bits (22), Expect = 0.026
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 503 tccagaaccagatggccgtcttgaaggagatgacggcgtccgacgccacc 552
|||||||||||| ||||||||||| | ||| ||||||||| |||||||
Sbjct: 749 tccagaaccagagcgccgtcttgaacgcgatcacggcgtcctgcgccacc 700
Score = 40.1 bits (20), Expect = 0.40
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 597 cccggccggcccgtagttgtagtt 620
|||||| |||||||||||||||||
Sbjct: 661 cccggcaggcccgtagttgtagtt 638
>gb|DQ190423.1| Sorghum halepense isolate hal4 chitinase-B (chib) gene, partial cds
Length = 599
Score = 44.1 bits (22), Expect = 0.026
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 503 tccagaaccagatggccgtcttgaaggagatgacggcgtccgacgccacc 552
|||||||||||| ||||||||||| | ||| ||||||||| |||||||
Sbjct: 532 tccagaaccagagcgccgtcttgaacgcgatcacggcgtcctgcgccacc 483
Score = 40.1 bits (20), Expect = 0.40
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 597 cccggccggcccgtagttgtagtt 620
|||||| |||||||||||||||||
Sbjct: 444 cccggcaggcccgtagttgtagtt 421
>gb|DQ190424.1| Sorghum halepense isolate hal6 chitinase-B (chib) gene, partial cds
Length = 599
Score = 44.1 bits (22), Expect = 0.026
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 503 tccagaaccagatggccgtcttgaaggagatgacggcgtccgacgccacc 552
|||||||||||| ||||||||||| | ||| ||||||||| |||||||
Sbjct: 532 tccagaaccagagcgccgtcttgaacgcgatcacggcgtcctgcgccacc 483
Score = 40.1 bits (20), Expect = 0.40
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 597 cccggccggcccgtagttgtagtt 620
|||||| |||||||||||||||||
Sbjct: 444 cccggcaggcccgtagttgtagtt 421
>gb|CL153826.1|CL153826 104_338_10780980_116_31370_228 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10780980, DNA
sequence
Length = 731
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 68 tttattttgatttgatttgat 88
|||||||||||||||||||||
Sbjct: 344 tttattttgatttgatttgat 324
>gb|CL168731.1|CL168731 104_366_10811042_116_31807_338 Sorghum methylation-filtered
library (LibID: 104) Sorghum bicolor genomic clone
10811042, DNA sequence
Length = 686
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 70 tattttgatttgatttgattt 90
|||||||||||||||||||||
Sbjct: 69 tattttgatttgatttgattt 89
>gb|CW034872.1|CW034872 104_265_10502819_115_30379 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10502819, DNA
sequence
Length = 661
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 70 tattttgatttgatttgattt 90
|||||||||||||||||||||
Sbjct: 352 tattttgatttgatttgattt 332
>gb|CW489486.1|CW489486 fsbb001f274h04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f274h04, DNA
sequence
Length = 597
Score = 42.1 bits (21), Expect = 0.10
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 500 tcatccagaaccagatggccgtcttgaaggagatgacggcgtccgacgccacc 552
||||||||||||||| ||||||||||| || || |||| |||| |||||||
Sbjct: 238 tcatccagaaccagagcgccgtcttgaatgaaatcacggggtcctgcgccacc 186
>gb|BE357811.1|BE357811 DG1_22_D10.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 624
Score = 42.1 bits (21), Expect = 0.10
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 500 tcatccagaaccagatggccgtcttgaaggagatgacggcgtccgacgccacc 552
||||||||||||||| ||||||||||| || || |||| |||| |||||||
Sbjct: 218 tcatccagaaccagagcgccgtcttgaatgaaatcacggggtcctgcgccacc 166
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 315,805
Number of Sequences: 832831
Number of extensions: 315805
Number of successful extensions: 94377
Number of sequences better than 0.5: 166
Number of HSP's better than 0.5 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93810
Number of HSP's gapped (non-prelim): 532
length of query: 1043
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1023
effective length of database: 474,703,049
effective search space: 485621219127
effective search space used: 485621219127
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)