BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3184927.2.1
(1157 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI211709.1|BI211709 IP1_60_H10.g1_A002 Immature pannicle... 494 e-137
gb|BI211450.1|BI211450 IP1_60_H10.b1_A002 Immature pannicle... 450 e-124
gb|BI351580.1|BI351580 IP1_72_F10.b1_A002 Immature pannicle... 450 e-124
gb|BI141055.1|BI141055 IP1_42_E11.b1_A002 Immature pannicle... 442 e-122
emb|AX512962.1| Sequence 7 from Patent WO02063021 426 e-117
gb|BI351507.1|BI351507 IP1_72_F10.g1_A002 Immature pannicle... 301 8e-080
gb|CW044896.1|CW044896 104_281_10509231_114_30238 Sorghum m... 250 2e-064
gb|CW486985.1|CW486985 fsbb001f252j04k0 Sorghum methylation... 248 1e-063
gb|CW044897.1|CW044897 104_281_10509231_115_30234 Sorghum m... 246 4e-063
gb|CW486984.1|CW486984 fsbb001f252j04f0 Sorghum methylation... 222 6e-056
gb|BI139741.1|BI139741 IP1_48_E11.g1_A002 Immature pannicle... 119 6e-025
gb|BI099434.1|BI099434 IP1_42_A11.g1_A002 Immature pannicle... 107 2e-021
gb|BZ331520.1|BZ331520 hw10a10.g1 WGS-SbicolorF (JM107 adap... 80 5e-013
gb|CL160198.1|CL160198 104_350_10804807_114_31822_247 Sorgh... 80 5e-013
gb|CL160199.1|CL160199 104_350_10804807_116_31823_247 Sorgh... 80 5e-013
gb|CW072227.1|CW072227 104_325_10592141_114_30537 Sorghum m... 80 5e-013
gb|CW128866.1|CW128866 104_510_11114251_116_34758_070 Sorgh... 80 5e-013
gb|CW146117.1|CW146117 104_538_11138820_116_34979_034 Sorgh... 80 5e-013
gb|CW446801.1|CW446801 fsbb001f179k03f0 Sorghum methylation... 80 5e-013
gb|CW464925.1|CW464925 fsbb001f215g22f0 Sorghum methylation... 80 5e-013
gb|BZ331519.1|BZ331519 hw10a10.b1 WGS-SbicolorF (JM107 adap... 74 3e-011
gb|CW498402.1|CW498402 fsbb001f291j19k0 Sorghum methylation... 74 3e-011
gb|CW501374.1|CW501374 fsbb001f297c11k0 Sorghum methylation... 74 3e-011
gb|BG946962.1|BG946962 IP1_1_H02.b1_A002 Immature pannicle ... 74 3e-011
gb|BG947892.1|BG947892 IP1_6_F06.b1_A002 Immature pannicle ... 74 3e-011
gb|BI141675.1|BI141675 IP1_55_E06.b1_A002 Immature pannicle... 74 3e-011
gb|CL154458.1|CL154458 104_339_10781423_114_31371_287 Sorgh... 56 7e-006
gb|CW055082.1|CW055082 104_296_10516884_114_30174 Sorghum m... 50 5e-004
gb|CW146118.1|CW146118 104_538_11138820_148_34983_034 Sorgh... 50 5e-004
gb|CW446802.1|CW446802 fsbb001f179k03k0 Sorghum methylation... 50 5e-004
gb|CW464926.1|CW464926 fsbb001f215g22k0 Sorghum methylation... 50 5e-004
gb|CW117054.1|CW117054 104_493_11107455_116_34614_064 Sorgh... 44 0.029
>gb|BI211709.1|BI211709 IP1_60_H10.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 578
Score = 494 bits (249), Expect = e-137
Identities = 324/349 (92%)
Strand = Plus / Minus
Query: 159 tcacagggggcactccagcaggtgtccctggtctttgagcgactgtacgcagtcgtcgaa 218
|||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||
Sbjct: 349 tcacagggggcactccagcaggtggccctggtctttgagcgactggacacagtcgtcgaa 290
Query: 219 catctcctgcacccctctgaacttgaagcccagcccctgcagcttcgacgtgttcagctg 278
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 catctcctgcactcccctgaacttgaagcccagcccctgcagcttcgacgtgttcagctg 230
Query: 279 gtacgactgcttgccgtaggggctgttcagcctccggggtatggggaatatcgggtagcg 338
|||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| ||
Sbjct: 229 gtacgactgcttgccgtaagggctgttcagtctccggggtatggggaatactgggtatcg 170
Query: 339 tttcgcgagcgaggagaccagctcgtcgttgtccagcaccactgagctgcacaggtacct 398
||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 169 cttcgcgagcaaggagaccagctcgtcgttgtccagcaccacggagctgcacaggtatct 110
Query: 399 cccggcggcctggggggcctcgtacaccaggatgtggctgctcgcaacgtcgtcgatgtg 458
||||| ||| ||||||| ||||||||||||||| |||||||| ||||| |||||||||||
Sbjct: 109 cccggtggcatggggggtctcgtacaccaggatatggctgctggcaacatcgtcgatgtg 50
Query: 459 gacgtaccccattcttccgtacgagctgaaccttgccgtgtcgccttgg 507
||||| |||||||||||||| || ||||||||||||||||| ||||||
Sbjct: 49 aacgtatcccattcttccgtaagaactgaaccttgccgtgtcaccttgg 1
>gb|BI211450.1|BI211450 IP1_60_H10.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 524
Score = 450 bits (227), Expect = e-124
Identities = 356/399 (89%)
Strand = Plus / Minus
Query: 742 tccctgatcctcaccgcagacgacgaagacgtaaggacgacccttttcaggaacgggttc 801
||||| |||||||| ||||| || ||||||||||| || ||||||||||| || ||||||
Sbjct: 440 tccctaatcctcactgcagatgatgaagacgtaagaacaacccttttcagaaatgggttc 381
Query: 802 ttcttgcacgatctcagcacgttcagagtaccgttcaccgcagggacgagcgtgtcctcc 861
|||||||||||||| ||||| |||||||||||||| || || || || ||||| ||||||
Sbjct: 380 ttcttgcacgatcttagcacattcagagtaccgtttactgctggaacaagcgtttcctcc 321
Query: 862 ttgctagtagagtcgggtttagcgaggacgggggatgcagtgtggaatacaccctcacag 921
|||||| |||| || | ||||||||| || ||||||||||||||||| || || ||||||
Sbjct: 320 ttgctactagaatcagatttagcgagcacaggggatgcagtgtggaagacgccatcacag 261
Query: 922 gccatcacggcgctgtcgaagctcccttcttccaacagatcagctcgcacgatttgcagc 981
|||| || || |||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 260 tccatgacagcattgtcaaagctcccttcttccaacagatcagctcgcacaatttgcagc 201
Query: 982 ctctctttagcgccaggtaatttccaaaggtgggctgtcttttggtgatttcctgggtcc 1041
|||||||| || |||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 200 ctctctttggcaccaggtaatttccaaaggtgtgctgttttttggtgatttcctgggtct 141
Query: 1042 ctgacagtccctaccacatgatatccagactcgaggagccgtttgataagccaagaggca 1101
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 140 ctgacagtccctaccacatgatatccagactcgagcagccgtttgataagccaagaggca 81
Query: 1102 acaaagcctgaggccccggttacgcataccttgcccttg 1140
| ||||||||| ||||| ||||| ||||| |||||||||
Sbjct: 80 ataaagcctgaagccccagttacacatactttgcccttg 42
Score = 79.8 bits (40), Expect = 5e-013
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 652 agggcataccatagatgcatcttctcgcagagtggcacggagctccatgtcgtttcgtcc 711
|||||||||||||| |||||||| || ||||||||||| ||||||||||| ||||| |||
Sbjct: 524 agggcataccatagctgcatcttttcacagagtggcacagagctccatgttgtttcatcc 465
Query: 712 agcgagat 719
|| |||||
Sbjct: 464 agtgagat 457
>gb|BI351580.1|BI351580 IP1_72_F10.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 497
Score = 450 bits (227), Expect = e-124
Identities = 356/399 (89%)
Strand = Plus / Minus
Query: 742 tccctgatcctcaccgcagacgacgaagacgtaaggacgacccttttcaggaacgggttc 801
||||| |||||||| ||||| || ||||||||||| || ||||||||||| || ||||||
Sbjct: 413 tccctaatcctcactgcagatgatgaagacgtaagaacaacccttttcagaaatgggttc 354
Query: 802 ttcttgcacgatctcagcacgttcagagtaccgttcaccgcagggacgagcgtgtcctcc 861
|||||||||||||| ||||| |||||||||||||| || || || || ||||| ||||||
Sbjct: 353 ttcttgcacgatcttagcacattcagagtaccgtttactgctggaacaagcgtttcctcc 294
Query: 862 ttgctagtagagtcgggtttagcgaggacgggggatgcagtgtggaatacaccctcacag 921
|||||| |||| || | ||||||||| || ||||||||||||||||| || || ||||||
Sbjct: 293 ttgctactagaatcagatttagcgagcacaggggatgcagtgtggaagacgccatcacag 234
Query: 922 gccatcacggcgctgtcgaagctcccttcttccaacagatcagctcgcacgatttgcagc 981
|||| || || |||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 233 tccatgacagcattgtcaaagctcccttcttccaacagatcagctcgcacaatttgcagc 174
Query: 982 ctctctttagcgccaggtaatttccaaaggtgggctgtcttttggtgatttcctgggtcc 1041
|||||||| || |||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 173 ctctctttggcaccaggtaatttccaaaggtgtgctgttttttggtgatttcctgggtct 114
Query: 1042 ctgacagtccctaccacatgatatccagactcgaggagccgtttgataagccaagaggca 1101
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 113 ctgacagtccctaccacatgatatccagactcgagcagccgtttgataagccaagaggca 54
Query: 1102 acaaagcctgaggccccggttacgcataccttgcccttg 1140
| ||||||||| ||||| ||||| ||||| |||||||||
Sbjct: 53 ataaagcctgaagccccagttacacatactttgcccttg 15
Score = 79.8 bits (40), Expect = 5e-013
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 652 agggcataccatagatgcatcttctcgcagagtggcacggagctccatgtcgtttcgtcc 711
|||||||||||||| |||||||| || ||||||||||| ||||||||||| ||||| |||
Sbjct: 497 agggcataccatagctgcatcttttcacagagtggcacagagctccatgttgtttcatcc 438
Query: 712 agcgagat 719
|| |||||
Sbjct: 437 agtgagat 430
>gb|BI141055.1|BI141055 IP1_42_E11.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 496
Score = 442 bits (223), Expect = e-122
Identities = 355/399 (88%)
Strand = Plus / Minus
Query: 742 tccctgatcctcaccgcagacgacgaagacgtaaggacgacccttttcaggaacgggttc 801
||||| |||||||| ||||| || ||||||||||| || ||||||||||| || ||||||
Sbjct: 440 tccctaatcctcactgcagatgatgaagacgtaagaacaacccttttcagaaatgggttc 381
Query: 802 ttcttgcacgatctcagcacgttcagagtaccgttcaccgcagggacgagcgtgtcctcc 861
|||||||||||||| ||||| |||||||||||||| || || || || ||||| ||||||
Sbjct: 380 ttcttgcacgatcttagcacattcagagtaccgtttactgctggaacaagcgtttcctcc 321
Query: 862 ttgctagtagagtcgggtttagcgaggacgggggatgcagtgtggaatacaccctcacag 921
|||||| |||| || | ||||||||| || ||||||||||||||||| || || ||||||
Sbjct: 320 ttgctactagaatcagatttagcgagcacaggggatgcagtgtggaagacgccatcacag 261
Query: 922 gccatcacggcgctgtcgaagctcccttcttccaacagatcagctcgcacgatttgcagc 981
|||| || || |||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 260 tccatgacagcattgtcaaagctcccttcttccaacagatcagctcgcacaatttgcagc 201
Query: 982 ctctctttagcgccaggtaatttccaaaggtgggctgtcttttggtgatttcctgggtcc 1041
|||||||| || |||||||||||||||||||| ||||| |||||| |||||||||||||
Sbjct: 200 ctctctttggcaccaggtaatttccaaaggtgtgctgttttttggagatttcctgggtct 141
Query: 1042 ctgacagtccctaccacatgatatccagactcgaggagccgtttgataagccaagaggca 1101
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 140 ctgacagtccctaccacatgatatccagactcgagcagccgtttgataagccaagaggca 81
Query: 1102 acaaagcctgaggccccggttacgcataccttgcccttg 1140
| ||||||||| ||||| ||||| ||||| |||||||||
Sbjct: 80 ataaagcctgaagccccagttacacatactttgcccttg 42
Score = 48.1 bits (24), Expect = 0.002
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 680 agagtggcacggagctccatgtcgtttcgtccagcgagat 719
|||||||||| ||||||||||| ||||| ||||| |||||
Sbjct: 496 agagtggcacagagctccatgttgtttcatccagtgagat 457
>emb|AX512962.1| Sequence 7 from Patent WO02063021
Length = 697
Score = 426 bits (215), Expect = e-117
Identities = 341/383 (89%)
Strand = Plus / Minus
Query: 742 tccctgatcctcaccgcagacgacgaagacgtaaggacgacccttttcaggaacgggttc 801
||||| |||||||| ||||| || ||||||||||| || ||||||||||| || ||||||
Sbjct: 383 tccctaatcctcactgcagatgatgaagacgtaagaacaacccttttcagaaatgggttc 324
Query: 802 ttcttgcacgatctcagcacgttcagagtaccgttcaccgcagggacgagcgtgtcctcc 861
|||||||||||||| ||||| |||||||||||||| || || || ||||| ||||||
Sbjct: 323 ttcttgcacgatcttagcacattcagagtaccgtttactgctggacaaagcgtttcctcc 264
Query: 862 ttgctagtagagtcgggtttagcgaggacgggggatgcagtgtggaatacaccctcacag 921
|||||| |||| || | ||||||||| || ||||||||||||||||| || || ||||||
Sbjct: 263 ttgctactagaatcagatttagcgagcacaggggatgcagtgtggaagacgccatcacag 204
Query: 922 gccatcacggcgctgtcgaagctcccttcttccaacagatcagctcgcacgatttgcagc 981
|||| || || |||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 203 tccatgacagcattgtcaaagctcccttcttccaacagatcagctcgcacaatttgcagc 144
Query: 982 ctctctttagcgccaggtaatttccaaaggtgggctgtcttttggtgatttcctgggtcc 1041
|||||||| || |||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 143 ctctctttggcaccaggtaatttccaaaggtgtgctgttttttggtgatttcctgggtct 84
Query: 1042 ctgacagtccctaccacatgatatccagactcgaggagccgtttgataagccaagaggca 1101
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 83 ctgacagtccctaccacatgatatccagactcgagcagccgtttgataagccaagaggca 24
Query: 1102 acaaagcctgaggccccggttac 1124
| ||||||||| |||||||||||
Sbjct: 23 ataaagcctgaagccccggttac 1
Score = 377 bits (190), Expect = e-102
Identities = 271/298 (90%)
Strand = Plus / Minus
Query: 422 acaccaggatgtggctgctcgcaacgtcgtcgatgtggacgtaccccattcttccgtacg 481
||||||||||||||||| ||||||| ||||||||||| ||||| |||||||||||||| |
Sbjct: 697 acaccaggatgtggctggtcgcaacatcgtcgatgtgaacgtatcccattcttccgtaag 638
Query: 482 agctgaaccttgccgtgtcgccttggaataggcctaggacgtctgaagcggtaacgcata 541
| ||||||||||||||||| |||||||||| ||||||||| |||||||||||||| ||||
Sbjct: 637 aactgaaccttgccgtgtcaccttggaataagcctaggacatctgaagcggtaacacata 578
Query: 542 gttcgtgggacaaactgggcccgatcacgaacgacgggaggacagtcacaaggtcgatgc 601
|||| ||||| ||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 577 gttcatgggataaactgggcccgatcacaaatgatgggaggacagtcacaaggtcgatgt 518
Query: 602 cgttctccttggcgaactcccacgccgctttctctgcaaataccttggctagggcatacc 661
||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 517 tgttctccttggcgaattcccatgccgctttctctgcaaataccttcgctagggcatacc 458
Query: 662 atagatgcatcttctcgcagagtggcacggagctccatgtcgtttcgtccagcgagat 719
|||| |||||||| || ||||||||||| ||||||||||| ||||| ||||| |||||
Sbjct: 457 atagctgcatcttttcacagagtggcacagagctccatgttgtttcatccagtgagat 400
>gb|BI351507.1|BI351507 IP1_72_F10.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 441
Score = 301 bits (152), Expect = 8e-080
Identities = 191/204 (93%)
Strand = Plus / Minus
Query: 160 cacagggggcactccagcaggtgtccctggtctttgagcgactgtacgcagtcgtcgaac 219
||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||
Sbjct: 204 cacagggggcactccagcaggtggccctggtctttgagcgactggacacagtcgtcgaac 145
Query: 220 atctcctgcacccctctgaacttgaagcccagcccctgcagcttcgacgtgttcagctgg 279
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 atctcctgcactcccctgaacttgaagcccagcccctgcagcttcgacgtgttcagctgg 85
Query: 280 tacgactgcttgccgtaggggctgttcagcctccggggtatggggaatatcgggtagcgt 339
||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| ||
Sbjct: 84 tacgactgcttgccgtaagggctgttcagtctccggggtatggggaatactgggtatcgc 25
Query: 340 ttcgcgagcgaggagaccagctcg 363
||| ||||| ||||||||||||||
Sbjct: 24 ttcacgagcaaggagaccagctcg 1
>gb|CW044896.1|CW044896 104_281_10509231_114_30238 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10509231, DNA
sequence
Length = 614
Score = 250 bits (126), Expect = 2e-064
Identities = 144/150 (96%)
Strand = Plus / Plus
Query: 159 tcacagggggcactccagcaggtgtccctggtctttgagcgactgtacgcagtcgtcgaa 218
|||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||
Sbjct: 292 tcacagggggcactccagcaggtggccctggtctttgagcgactggacacagtcgtcgaa 351
Query: 219 catctcctgcacccctctgaacttgaagcccagcccctgcagcttcgacgtgttcagctg 278
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 catctcctgcactcccctgaacttgaagcccagcccctgcagcttcgacgtgttcagctg 411
Query: 279 gtacgactgcttgccgtaggggctgttcag 308
|||||||||||||||||| |||||||||||
Sbjct: 412 gtacgactgcttgccgtaagggctgttcag 441
Score = 111 bits (56), Expect = 1e-022
Identities = 84/92 (91%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 309 cctccggggtatggggaatatcgggtagcgtttcgcgagcgaggagaccagctcgtcgtt 368
|||||||||||||||||||| ||||| || ||||||||| ||||||| |||||||||||
Sbjct: 524 cctccggggtatggggaatactgggtatcgcttcgcgagcaaggagac-agctcgtcgtt 582
Query: 369 gtccagcaccactgagctgcacaggtacctcc 400
|||||||||||| |||||||||||||| ||||
Sbjct: 583 gtccagcaccacggagctgcacaggtatctcc 614
>gb|CW486985.1|CW486985 fsbb001f252j04k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f252j04, DNA
sequence
Length = 591
Score = 248 bits (125), Expect = 1e-063
Identities = 146/153 (95%)
Strand = Plus / Plus
Query: 159 tcacagggggcactccagcaggtgtccctggtctttgagcgactgtacgcagtcgtcgaa 218
|||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||
Sbjct: 343 tcacagggggcactccagcaggtggccctggtctttgagcgactggacacagtcgtcgaa 402
Query: 219 catctcctgcacccctctgaacttgaagcccagcccctgcagcttcgacgtgttcagctg 278
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 catctcctgcactcccctgaacttgaagcccagcccctgcagcttcgacgtgttcagctg 462
Query: 279 gtacgactgcttgccgtaggggctgttcagcct 311
|||||||||||||||||| |||||||||||||
Sbjct: 463 gtacgactgcttgccgtaaaggctgttcagcct 495
>gb|CW044897.1|CW044897 104_281_10509231_115_30234 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10509231, DNA
sequence
Length = 552
Score = 246 bits (124), Expect = 4e-063
Identities = 175/192 (91%)
Strand = Plus / Minus
Query: 309 cctccggggtatggggaatatcgggtagcgtttcgcgagcgaggagaccagctcgtcgtt 368
|||||||||||||||||||| ||||| || ||||||||| |||||||||||||||||||
Sbjct: 321 cctccggggtatggggaatactgggtatcgcttcgcgagcaaggagaccagctcgtcgtt 262
Query: 369 gtccagcaccactgagctgcacaggtacctcccggcggcctggggggcctcgtacaccag 428
|||||||||||| |||||||||||||| ||||||| ||| ||||||| ||||||||||||
Sbjct: 261 gtccagcaccacggagctgcacaggtatctcccggtggcatggggggtctcgtacaccag 202
Query: 429 gatgtggctgctcgcaacgtcgtcgatgtggacgtaccccattcttccgtacgagctgaa 488
||| |||||||| ||||| ||||||||||| ||||| |||||||||||||| || |||||
Sbjct: 201 gatatggctgctggcaacatcgtcgatgtgaacgtatcccattcttccgtaagaactgaa 142
Query: 489 ccttgccgtgtc 500
||||||||||||
Sbjct: 141 ccttgccgtgtc 130
Score = 234 bits (118), Expect = 1e-059
Identities = 143/150 (95%), Gaps = 1/150 (0%)
Strand = Plus / Minus
Query: 159 tcacagggggcactccagcaggtgtccctggtctttgagcgactgtacgcagtcgtcgaa 218
|||||||||||||||||||||||| || ||||||||||||||||| || |||||||||||
Sbjct: 552 tcacagggggcactccagcaggtggcc-tggtctttgagcgactggacacagtcgtcgaa 494
Query: 219 catctcctgcacccctctgaacttgaagcccagcccctgcagcttcgacgtgttcagctg 278
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 catctcctgcactcccctgaacttgaagcccagcccctgcagcttcgacgtgttcagctg 434
Query: 279 gtacgactgcttgccgtaggggctgttcag 308
|||||||||||||||||| |||||||||||
Sbjct: 433 gtacgactgcttgccgtaagggctgttcag 404
>gb|CW486984.1|CW486984 fsbb001f252j04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f252j04, DNA
sequence
Length = 454
Score = 222 bits (112), Expect = 6e-056
Identities = 151/164 (92%)
Strand = Plus / Minus
Query: 502 ccttggaataggcctaggacgtctgaagcggtaacgcatagttcgtgggacaaactgggc 561
|||||||||| ||||||||| |||||||||||||| |||||||| ||||| |||||||||
Sbjct: 418 ccttggaataagcctaggacatctgaagcggtaacacatagttcatgggataaactgggc 359
Query: 562 ccgatcacgaacgacgggaggacagtcacaaggtcgatgccgttctccttggcgaactcc 621
|||||||| || || |||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 358 ccgatcacaaatgatgggaggacagtcacaaggtcgatgttgttctccttggcgaattcc 299
Query: 622 cacgccgctttctctgcaaataccttggctagggcataccatag 665
|| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 298 catgccgctttctctgcaaataccttcgctagggcataccatag 255
Score = 99.6 bits (50), Expect = 6e-019
Identities = 80/90 (88%)
Strand = Plus / Minus
Query: 742 tccctgatcctcaccgcagacgacgaagacgtaaggacgacccttttcaggaacgggttc 801
||||| |||||||| ||||| || ||||||||||| || ||||||||||| || ||||||
Sbjct: 90 tccctaatcctcactgcagatgatgaagacgtaagaacaacccttttcagaaatgggttc 31
Query: 802 ttcttgcacgatctcagcacgttcagagta 831
|||||||||||||| ||||| |||||||||
Sbjct: 30 ttcttgcacgatcttagcacattcagagta 1
Score = 58.0 bits (29), Expect = 2e-006
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 667 tgcatcttctcgcagagtggcacggagctccatgtcgtttcgtccagcgagat 719
|||||||| || ||||||||||| ||||||||||| ||||| ||||| |||||
Sbjct: 159 tgcatcttttcacagagtggcacagagctccatgttgtttcatccagtgagat 107
>gb|BI139741.1|BI139741 IP1_48_E11.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 114
Score = 119 bits (60), Expect = 6e-025
Identities = 85/92 (92%), Gaps = 1/92 (1%)
Strand = Plus / Minus
Query: 159 tcacagggggcactcca-gcaggtgtccctggtctttgagcgactgtacgcagtcgtcga 217
||||||||||||||||| | ||||| |||||||||||||||||||| || ||||||||||
Sbjct: 92 tcacagggggcactccaaggaggtggccctggtctttgagcgactggacacagtcgtcga 33
Query: 218 acatctcctgcacccctctgaacttgaagccc 249
||||||||||||| || |||||||||||||||
Sbjct: 32 acatctcctgcactcccctgaacttgaagccc 1
>gb|BI099434.1|BI099434 IP1_42_A11.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 290
Score = 107 bits (54), Expect = 2e-021
Identities = 75/82 (91%)
Strand = Plus / Minus
Query: 159 tcacagggggcactccagcaggtgtccctggtctttgagcgactgtacgcagtcgtcgaa 218
|||||||||||||||||||||| | |||||||||||||||||||| || |||||||| ||
Sbjct: 82 tcacagggggcactccagcaggaggccctggtctttgagcgactggacacagtcgtctaa 23
Query: 219 catctcctgcacccctctgaac 240
|||||||||||| || ||||||
Sbjct: 22 catctcctgcactcccctgaac 1
>gb|BZ331520.1|BZ331520 hw10a10.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hw10a10 5', DNA sequence
Length = 635
Score = 79.8 bits (40), Expect = 5e-013
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 417 ctcgtacaccaggatgtggctgctcgcaacgtcgtcgatgtggacgtaccccattcttcc 476
||||||| |||||||||||| ||||| |||||||||||||||||||||||||| || ||
Sbjct: 445 ctcgtacgccaggatgtggcacctcgccacgtcgtcgatgtggacgtaccccatcctccc 504
Query: 477 gtac 480
||||
Sbjct: 505 gtac 508
>gb|CL160198.1|CL160198 104_350_10804807_114_31822_247 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10804807, DNA
sequence
Length = 588
Score = 79.8 bits (40), Expect = 5e-013
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 417 ctcgtacaccaggatgtggctgctcgcaacgtcgtcgatgtggacgtaccccattcttcc 476
||||||| |||||||||||| ||||| |||||||||||||||||||||||||| || ||
Sbjct: 282 ctcgtacgccaggatgtggcacctcgccacgtcgtcgatgtggacgtaccccatcctccc 341
Query: 477 gtac 480
||||
Sbjct: 342 gtac 345
>gb|CL160199.1|CL160199 104_350_10804807_116_31823_247 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10804807, DNA
sequence
Length = 729
Score = 79.8 bits (40), Expect = 5e-013
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 417 ctcgtacaccaggatgtggctgctcgcaacgtcgtcgatgtggacgtaccccattcttcc 476
||||||| |||||||||||| ||||| |||||||||||||||||||||||||| || ||
Sbjct: 645 ctcgtacgccaggatgtggcacctcgccacgtcgtcgatgtggacgtaccccatcctccc 586
Query: 477 gtac 480
||||
Sbjct: 585 gtac 582
Score = 50.1 bits (25), Expect = 5e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 583 acagtcacaaggtcgatgccgttctccttggcgaactcccacgccgctttctc 635
||||||||||||||||| | || ||| ||||| |||||||| ||||| |||||
Sbjct: 179 acagtcacaaggtcgatcctgtgctctttggcaaactcccaggccgccttctc 127
>gb|CW072227.1|CW072227 104_325_10592141_114_30537 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10592141, DNA
sequence
Length = 604
Score = 79.8 bits (40), Expect = 5e-013
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 417 ctcgtacaccaggatgtggctgctcgcaacgtcgtcgatgtggacgtaccccattcttcc 476
||||||| |||||||||||| ||||| |||||||||||||||||||||||||| || ||
Sbjct: 233 ctcgtacgccaggatgtggcacctcgccacgtcgtcgatgtggacgtaccccatcctccc 174
Query: 477 gtac 480
||||
Sbjct: 173 gtac 170
>gb|CW128866.1|CW128866 104_510_11114251_116_34758_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11114251, DNA
sequence
Length = 563
Score = 79.8 bits (40), Expect = 5e-013
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 417 ctcgtacaccaggatgtggctgctcgcaacgtcgtcgatgtggacgtaccccattcttcc 476
||||||| |||||||||||| ||||| |||||||||||||||||||||||||| || ||
Sbjct: 318 ctcgtacgccaggatgtggcacctcgccacgtcgtcgatgtggacgtaccccatcctccc 259
Query: 477 gtac 480
||||
Sbjct: 258 gtac 255
>gb|CW146117.1|CW146117 104_538_11138820_116_34979_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11138820, DNA
sequence
Length = 611
Score = 79.8 bits (40), Expect = 5e-013
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 417 ctcgtacaccaggatgtggctgctcgcaacgtcgtcgatgtggacgtaccccattcttcc 476
||||||| |||||||||||| ||||| |||||||||||||||||||||||||| || ||
Sbjct: 390 ctcgtacgccaggatgtggcacctcgccacgtcgtcgatgtggacgtaccccatcctccc 449
Query: 477 gtac 480
||||
Sbjct: 450 gtac 453
>gb|CW446801.1|CW446801 fsbb001f179k03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f179k03, DNA
sequence
Length = 651
Score = 79.8 bits (40), Expect = 5e-013
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 417 ctcgtacaccaggatgtggctgctcgcaacgtcgtcgatgtggacgtaccccattcttcc 476
||||||| |||||||||||| ||||| |||||||||||||||||||||||||| || ||
Sbjct: 411 ctcgtacgccaggatgtggcacctcgccacgtcgtcgatgtggacgtaccccatcctccc 470
Query: 477 gtac 480
||||
Sbjct: 471 gtac 474
>gb|CW464925.1|CW464925 fsbb001f215g22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f215g22, DNA
sequence
Length = 505
Score = 79.8 bits (40), Expect = 5e-013
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 417 ctcgtacaccaggatgtggctgctcgcaacgtcgtcgatgtggacgtaccccattcttcc 476
||||||| |||||||||||| ||||| |||||||||||||||||||||||||| || ||
Sbjct: 418 ctcgtacgccaggatgtggcacctcgccacgtcgtcgatgtggacgtaccccatcctccc 477
Query: 477 gtac 480
||||
Sbjct: 478 gtac 481
>gb|BZ331519.1|BZ331519 hw10a10.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hw10a10 5', DNA sequence
Length = 728
Score = 73.8 bits (37), Expect = 3e-011
Identities = 85/101 (84%)
Strand = Plus / Minus
Query: 895 gatgcagtgtggaatacaccctcacaggccatcacggcgctgtcgaagctcccttcttcc 954
|||||||||||||| || |||||||| |||||||| ||| ||| ||||||||||| |||
Sbjct: 387 gatgcagtgtggaagacgccctcacaagccatcacagcgtcgtcaaagctcccttcctcc 328
Query: 955 aacagatcagctcgcacgatttgcagcctctctttagcgcc 995
|| || ||||||| ||| | ||||||||||| || |||||
Sbjct: 327 aagaggtcagctctcacaagctgcagcctctcctttgcgcc 287
Score = 44.1 bits (22), Expect = 0.029
Identities = 79/98 (80%)
Strand = Plus / Minus
Query: 739 tcgtccctgatcctcaccgcagacgacgaagacgtaaggacgacccttttcaggaacggg 798
|||||| |||||||||| | | |||||||||||| ||||| ||||| | ||| | ||
Sbjct: 657 tcgtccttgatcctcacggtcgccgacgaagacgtcaggacaaccctcctgagggatgga 598
Query: 799 ttcttcttgcacgatctcagcacgttcagagtaccgtt 836
||||||||||| || | || ||||||||||| |||||
Sbjct: 597 ttcttcttgcatgaacgtagaacgttcagagtgccgtt 560
>gb|CW498402.1|CW498402 fsbb001f291j19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f291j19, DNA
sequence
Length = 649
Score = 73.8 bits (37), Expect = 3e-011
Identities = 85/101 (84%)
Strand = Plus / Plus
Query: 895 gatgcagtgtggaatacaccctcacaggccatcacggcgctgtcgaagctcccttcttcc 954
|||||||||||||| || |||||||| |||||||| ||| ||| ||||||||||| |||
Sbjct: 164 gatgcagtgtggaagacgccctcacaagccatcacagcgtcgtcaaagctcccttcctcc 223
Query: 955 aacagatcagctcgcacgatttgcagcctctctttagcgcc 995
|| || ||||||| ||| | ||||||||||| || |||||
Sbjct: 224 aagaggtcagctctcacaagctgcagcctctcctttgcgcc 264
>gb|CW501374.1|CW501374 fsbb001f297c11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f297c11, DNA
sequence
Length = 657
Score = 73.8 bits (37), Expect = 3e-011
Identities = 85/101 (84%)
Strand = Plus / Plus
Query: 895 gatgcagtgtggaatacaccctcacaggccatcacggcgctgtcgaagctcccttcttcc 954
|||||||||||||| || |||||||| |||||||| ||| ||| ||||||||||| |||
Sbjct: 369 gatgcagtgtggaagacgccctcacaagccatcacagcgtcgtcaaagctcccttcctcc 428
Query: 955 aacagatcagctcgcacgatttgcagcctctctttagcgcc 995
|| || ||||||| ||| | ||||||||||| || |||||
Sbjct: 429 aagaggtcagctctcacaagctgcagcctctcctttgcgcc 469
Score = 44.1 bits (22), Expect = 0.029
Identities = 79/98 (80%)
Strand = Plus / Plus
Query: 739 tcgtccctgatcctcaccgcagacgacgaagacgtaaggacgacccttttcaggaacggg 798
|||||| |||||||||| | | |||||||||||| ||||| ||||| | ||| | ||
Sbjct: 99 tcgtccttgatcctcacggtcgccgacgaagacgtcaggacaaccctcctgagggatgga 158
Query: 799 ttcttcttgcacgatctcagcacgttcagagtaccgtt 836
||||||||||| || | || ||||||||||| |||||
Sbjct: 159 ttcttcttgcatgaacgtagaacgttcagagtgccgtt 196
>gb|BG946962.1|BG946962 IP1_1_H02.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 485
Score = 73.8 bits (37), Expect = 3e-011
Identities = 85/101 (84%)
Strand = Plus / Minus
Query: 895 gatgcagtgtggaatacaccctcacaggccatcacggcgctgtcgaagctcccttcttcc 954
|||||||||||||| || |||||||| |||||||| ||| ||| ||||||||||| |||
Sbjct: 271 gatgcagtgtggaagacgccctcacaagccatcacagcgtcgtcaaagctcccttcctcc 212
Query: 955 aacagatcagctcgcacgatttgcagcctctctttagcgcc 995
|| || ||||||| ||| | ||||||||||| || |||||
Sbjct: 211 aagaggtcagctctcacaagctgcagcctctcctttgcgcc 171
Score = 44.1 bits (22), Expect = 0.029
Identities = 79/98 (80%)
Strand = Plus / Minus
Query: 739 tcgtccctgatcctcaccgcagacgacgaagacgtaaggacgacccttttcaggaacggg 798
|||||| |||||||||| | | |||||||||||| ||||| ||||| | ||| | ||
Sbjct: 421 tcgtccttgatcctcacggtcgccgacgaagacgtcaggacaaccctcctgagggatgga 362
Query: 799 ttcttcttgcacgatctcagcacgttcagagtaccgtt 836
||||||||||| || | || ||||||||||| |||||
Sbjct: 361 ttcttcttgcatgaacgtagaacgttcagagtgccgtt 324
>gb|BG947892.1|BG947892 IP1_6_F06.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 454
Score = 73.8 bits (37), Expect = 3e-011
Identities = 85/101 (84%)
Strand = Plus / Minus
Query: 895 gatgcagtgtggaatacaccctcacaggccatcacggcgctgtcgaagctcccttcttcc 954
|||||||||||||| || |||||||| |||||||| ||| ||| ||||||||||| |||
Sbjct: 202 gatgcagtgtggaagacgccctcacaagccatcacagcgtcgtcaaagctcccttcctcc 143
Query: 955 aacagatcagctcgcacgatttgcagcctctctttagcgcc 995
|| || ||||||| ||| | ||||||||||| || |||||
Sbjct: 142 aagaggtcagctctcacaagctgcagcctctcctttgcgcc 102
Score = 44.1 bits (22), Expect = 0.029
Identities = 79/98 (80%)
Strand = Plus / Minus
Query: 739 tcgtccctgatcctcaccgcagacgacgaagacgtaaggacgacccttttcaggaacggg 798
|||||| |||||||||| | | |||||||||||| ||||| ||||| | ||| | ||
Sbjct: 352 tcgtccttgatcctcacggtcgccgacgaagacgtcaggacaaccctcctgagggatgga 293
Query: 799 ttcttcttgcacgatctcagcacgttcagagtaccgtt 836
||||||||||| || | || ||||||||||| |||||
Sbjct: 292 ttcttcttgcatgaacgtagaacgttcagagtgccgtt 255
>gb|BI141675.1|BI141675 IP1_55_E06.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 376
Score = 73.8 bits (37), Expect = 3e-011
Identities = 85/101 (84%)
Strand = Plus / Minus
Query: 895 gatgcagtgtggaatacaccctcacaggccatcacggcgctgtcgaagctcccttcttcc 954
|||||||||||||| || |||||||| |||||||| ||| ||| ||||||||||| |||
Sbjct: 283 gatgcagtgtggaagacgccctcacaagccatcacagcgtcgtcaaagctcccttcctcc 224
Query: 955 aacagatcagctcgcacgatttgcagcctctctttagcgcc 995
|| || ||||||| ||| | ||||||||||| || |||||
Sbjct: 223 aagaggtcagctctcacaagctgcagcctctcctttgcgcc 183
>gb|CL154458.1|CL154458 104_339_10781423_114_31371_287 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10781423, DNA
sequence
Length = 727
Score = 56.0 bits (28), Expect = 7e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 895 gatgcagtgtggaatacaccctcacaggccatcacggcgctgtcgaagctcccttc 950
|||||||||||||| || |||||||| |||||||| ||| ||| |||||||||||
Sbjct: 671 gatgcagtgtggaagacgccctcacaagccatcacagcgtcgtcaaagctcccttc 726
Score = 50.1 bits (25), Expect = 5e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 583 acagtcacaaggtcgatgccgttctccttggcgaactcccacgccgctttctc 635
||||||||||||||||| | || ||| ||||| |||||||| ||||| |||||
Sbjct: 137 acagtcacaaggtcgatcctgtgctctttggcaaactcccaggccgccttctc 189
Score = 44.1 bits (22), Expect = 0.029
Identities = 79/98 (80%)
Strand = Plus / Plus
Query: 739 tcgtccctgatcctcaccgcagacgacgaagacgtaaggacgacccttttcaggaacggg 798
|||||| |||||||||| | | |||||||||||| ||||| ||||| | ||| | ||
Sbjct: 401 tcgtccttgatcctcacggtcgccgacgaagacgtcaggacaaccctcctgagggatgga 460
Query: 799 ttcttcttgcacgatctcagcacgttcagagtaccgtt 836
||||||||||| || | || ||||||||||| |||||
Sbjct: 461 ttcttcttgcatgaacgtagaacgttcagagtgccgtt 498
>gb|CW055082.1|CW055082 104_296_10516884_114_30174 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10516884, DNA
sequence
Length = 576
Score = 50.1 bits (25), Expect = 5e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 583 acagtcacaaggtcgatgccgttctccttggcgaactcccacgccgctttctc 635
||||||||||||||||| | || ||| ||||| |||||||| ||||| |||||
Sbjct: 412 acagtcacaaggtcgatcctgtgctctttggcaaactcccaggccgccttctc 360
Score = 44.1 bits (22), Expect = 0.029
Identities = 79/98 (80%)
Strand = Plus / Minus
Query: 739 tcgtccctgatcctcaccgcagacgacgaagacgtaaggacgacccttttcaggaacggg 798
|||||| |||||||||| | | |||||||||||| ||||| ||||| | ||| | ||
Sbjct: 148 tcgtccttgatcctcacggtcgccgacgaagacgtcaggacaaccctcctgagggatgga 89
Query: 799 ttcttcttgcacgatctcagcacgttcagagtaccgtt 836
||||||||||| || | || ||||||||||| |||||
Sbjct: 88 ttcttcttgcatgaacgtagaacgttcagagtgccgtt 51
>gb|CW146118.1|CW146118 104_538_11138820_148_34983_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11138820, DNA
sequence
Length = 645
Score = 50.1 bits (25), Expect = 5e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 583 acagtcacaaggtcgatgccgttctccttggcgaactcccacgccgctttctc 635
||||||||||||||||| | || ||| ||||| |||||||| ||||| |||||
Sbjct: 267 acagtcacaaggtcgatcctgtgctctttggcaaactcccaggccgccttctc 215
>gb|CW446802.1|CW446802 fsbb001f179k03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f179k03, DNA
sequence
Length = 712
Score = 50.1 bits (25), Expect = 5e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 583 acagtcacaaggtcgatgccgttctccttggcgaactcccacgccgctttctc 635
||||||||||||||||| | || ||| ||||| |||||||| ||||| |||||
Sbjct: 542 acagtcacaaggtcgatcctgtgctctttggcaaactcccaggccgccttctc 490
Score = 44.1 bits (22), Expect = 0.029
Identities = 79/98 (80%)
Strand = Plus / Minus
Query: 739 tcgtccctgatcctcaccgcagacgacgaagacgtaaggacgacccttttcaggaacggg 798
|||||| |||||||||| | | |||||||||||| ||||| ||||| | ||| | ||
Sbjct: 278 tcgtccttgatcctcacggtcgccgacgaagacgtcaggacaaccctcctgagggatgga 219
Query: 799 ttcttcttgcacgatctcagcacgttcagagtaccgtt 836
||||||||||| || | || ||||||||||| |||||
Sbjct: 218 ttcttcttgcatgaacgtagaacgttcagagtgccgtt 181
>gb|CW464926.1|CW464926 fsbb001f215g22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f215g22, DNA
sequence
Length = 613
Score = 50.1 bits (25), Expect = 5e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 583 acagtcacaaggtcgatgccgttctccttggcgaactcccacgccgctttctc 635
||||||||||||||||| | || ||| ||||| |||||||| ||||| |||||
Sbjct: 359 acagtcacaaggtcgatcctgtgctctttggcaaactcccaggccgccttctc 307
Score = 40.1 bits (20), Expect = 0.45
Identities = 74/92 (80%)
Strand = Plus / Minus
Query: 739 tcgtccctgatcctcaccgcagacgacgaagacgtaaggacgacccttttcaggaacggg 798
|||||| |||||||||| | | |||||||||||| ||||| ||||| | ||| | ||
Sbjct: 95 tcgtccttgatcctcacggtcgccgacgaagacgtcaggacaaccctcctgagggatgga 36
Query: 799 ttcttcttgcacgatctcagcacgttcagagt 830
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Sbjct: 35 ttcttcttgcatgaacgtagaacgttcagagt 4
>gb|CW117054.1|CW117054 104_493_11107455_116_34614_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11107455, DNA
sequence
Length = 229
Score = 44.1 bits (22), Expect = 0.029
Identities = 79/98 (80%)
Strand = Plus / Minus
Query: 739 tcgtccctgatcctcaccgcagacgacgaagacgtaaggacgacccttttcaggaacggg 798
|||||| |||||||||| | | |||||||||||| ||||| ||||| | ||| | ||
Sbjct: 188 tcgtccttgatcctcacggtcgccgacgaagacgtcaggacaaccctcgtgagggatgga 129
Query: 799 ttcttcttgcacgatctcagcacgttcagagtaccgtt 836
||||||||||| || | || ||||||||||| |||||
Sbjct: 128 ttcttcttgcatgaacgtagaacgttcagagtgccgtt 91
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 218,623
Number of Sequences: 832831
Number of extensions: 218623
Number of successful extensions: 61029
Number of sequences better than 0.5: 32
Number of HSP's better than 0.5 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60949
Number of HSP's gapped (non-prelim): 76
length of query: 1157
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1137
effective length of database: 474,703,049
effective search space: 539737366713
effective search space used: 539737366713
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)