BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3148257.2.1
(675 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD428205.1|CD428205 ETH1_28_F10.b1_A002 Ethylene-treated... 597 e-169
gb|CW282716.1|CW282716 104_758_11408859_148_35471_002 Sorgh... 333 1e-089
gb|CW047813.1|CW047813 104_285_10512898_115_30217 Sorghum m... 139 4e-031
gb|CW260269.1|CW260269 104_726_11228872_116_35193_050 Sorgh... 139 4e-031
gb|CW282715.1|CW282715 104_758_11408859_116_35467_002 Sorgh... 139 4e-031
gb|CW457933.1|CW457933 fsbb001f203p11k0 Sorghum methylation... 139 4e-031
gb|CL180224.1|CL180224 104_389_10895844_148_31907_372 Sorgh... 123 2e-026
gb|CW047812.1|CW047812 104_285_10512898_114_30216 Sorghum m... 115 5e-024
gb|CL180223.1|CL180223 104_389_10895844_116_31908_372 Sorgh... 109 3e-022
gb|BE367594.1|BE367594 PI1_9_E12.b1_A002 Pathogen induced 1... 40 0.26
>gb|CD428205.1|CD428205 ETH1_28_F10.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_28_F10_A002 3', mRNA sequence
Length = 673
Score = 597 bits (301), Expect = e-169
Identities = 361/381 (94%), Gaps = 5/381 (1%)
Strand = Plus / Plus
Query: 150 cttttggcatttattcctactggttggggcttgatttcgatcgctcaagtaattcggcca 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttttggcatttattcctactggttggggcttgatttcgatcgctcaagtaattcggcca 60
Query: 210 ttcatcgaatccactgtggtctgggacagtattatttctgtggctcgtttgtatgagata 269
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 61 ttcatcgaatccactgtggtgtgggacagtattatttctgtggctcgcttgtatgagata 120
Query: 270 ctgcttggagtgttcattatggcaccagttgcattgctgtcctggttgccgggatttcaa 329
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctgcttggagcattcattatggcaccagttgcattgctgtcctggttgccgggatttcaa 180
Query: 330 gaaatgcagacaagggtacttttcaatgaaggttttagcaggggcctccagatatcccgt 389
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 181 gaaatgcagacaagggtacttttcaatgaaggtttcagcaggggcctccagatatcccgt 240
Query: 390 attcttactgggaaaagaacaaatacagtttgaggttctgacccagattgtcgcg----- 444
||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 241 attcttactggaaaaaagacaaatacagtttgaggttctgacccagattgtcgaggactt 300
Query: 445 gcggtgaagcagcggtgctctatctcctatgtacagcttagcaattcagtgtggaagggc 504
| ||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 301 gtggtatagcagcggtgctctatcttctatgtacagcttagcaattcagtatggaagggc 360
Query: 505 tttgtgcttactgatatagct 525
||||||||||||||| |||||
Sbjct: 361 tttgtgcttactgatgtagct 381
Score = 139 bits (70), Expect = 4e-031
Identities = 106/117 (90%), Gaps = 2/117 (1%)
Strand = Plus / Plus
Query: 559 tagctatctagtttaggagtccagatttgtgattttggcaatttaggtattcagttcttt 618
|||||||||||||||||||||||||||| |||||||||||||| || | ||| || ||
Sbjct: 377 tagctatctagtttaggagtccagatttctgattttggcaattgagatcatcaatt--tt 434
Query: 619 tgtacattggttgagctagttgtgtgtagctgattctattgcagcaccaccggtgag 675
||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 435 tgtacattggtagcgctagttgtgtgtagctgattctattgcagcagcaccggtgag 491
>gb|CW282716.1|CW282716 104_758_11408859_148_35471_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11408859, DNA
sequence
Length = 540
Score = 333 bits (168), Expect = 1e-089
Identities = 195/204 (95%)
Strand = Plus / Plus
Query: 222 actgtggtctgggacagtattatttctgtggctcgtttgtatgagatactgcttggagtg 281
|||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 actgtggtgtggaacagtattatttctgtggctcgcttgtatgagatactgcttggagca 60
Query: 282 ttcattatggcaccagttgcattgctgtcctggttgccgggatttcaagaaatgcagaca 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttcattatggcaccagttgcattgctgtcctggttgccgggatttcaagaaatgcagaca 120
Query: 342 agggtacttttcaatgaaggttttagcaggggcctccagatatcccgtattcttactggg 401
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 121 agggtacttttcaatgaaggtttcagcaggggcctccagatatcccgtattcttactgga 180
Query: 402 aaaagaacaaatacagtttgaggt 425
|||| ||||||||||||||||||
Sbjct: 181 aaaaagacaaatacagtttgaggt 204
>gb|CW047813.1|CW047813 104_285_10512898_115_30217 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10512898, DNA
sequence
Length = 587
Score = 139 bits (70), Expect = 4e-031
Identities = 106/117 (90%), Gaps = 2/117 (1%)
Strand = Plus / Minus
Query: 559 tagctatctagtttaggagtccagatttgtgattttggcaatttaggtattcagttcttt 618
|||||||||||||||||||||||||||| |||||||||||||| || | ||| || ||
Sbjct: 278 tagctatctagtttaggagtccagatttctgattttggcaattgagatcatcaatt--tt 221
Query: 619 tgtacattggttgagctagttgtgtgtagctgattctattgcagcaccaccggtgag 675
||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 220 tgtacattggtagcgctagttgtgtgtagctgattctattgcagcagcaccggtgag 164
Score = 123 bits (62), Expect = 2e-026
Identities = 71/74 (95%)
Strand = Plus / Minus
Query: 452 agcagcggtgctctatctcctatgtacagcttagcaattcagtgtggaagggctttgtgc 511
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 347 agcagcggtgctctatcttctatgtacagcttagcaattcagtatggaagggctttgtgc 288
Query: 512 ttactgatatagct 525
|||||||| |||||
Sbjct: 287 ttactgatgtagct 274
>gb|CW260269.1|CW260269 104_726_11228872_116_35193_050 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11228872, DNA
sequence
Length = 651
Score = 139 bits (70), Expect = 4e-031
Identities = 106/117 (90%), Gaps = 2/117 (1%)
Strand = Plus / Plus
Query: 559 tagctatctagtttaggagtccagatttgtgattttggcaatttaggtattcagttcttt 618
|||||||||||||||||||||||||||| |||||||||||||| || | ||| || ||
Sbjct: 221 tagctatctagtttaggagtccagatttctgattttggcaattgagatcatcaatt--tt 278
Query: 619 tgtacattggttgagctagttgtgtgtagctgattctattgcagcaccaccggtgag 675
||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 279 tgtacattggtagcgctagttgtgtgtagctgattctattgcagcagcaccggtgag 335
Score = 123 bits (62), Expect = 2e-026
Identities = 71/74 (95%)
Strand = Plus / Plus
Query: 452 agcagcggtgctctatctcctatgtacagcttagcaattcagtgtggaagggctttgtgc 511
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 152 agcagcggtgctctatcttctatgtacagcttagcaattcagtatggaagggctttgtgc 211
Query: 512 ttactgatatagct 525
|||||||| |||||
Sbjct: 212 ttactgatgtagct 225
>gb|CW282715.1|CW282715 104_758_11408859_116_35467_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11408859, DNA
sequence
Length = 565
Score = 139 bits (70), Expect = 4e-031
Identities = 106/117 (90%), Gaps = 2/117 (1%)
Strand = Plus / Minus
Query: 559 tagctatctagtttaggagtccagatttgtgattttggcaatttaggtattcagttcttt 618
|||||||||||||||||||||||||||| |||||||||||||| || | ||| || ||
Sbjct: 293 tagctatctagtttaggagtccagatttctgattttggcaattgagatcatcaatt--tt 236
Query: 619 tgtacattggttgagctagttgtgtgtagctgattctattgcagcaccaccggtgag 675
||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 235 tgtacattggtagcgctagttgtgtgtagctgattctattgcagcagcaccggtgag 179
Score = 123 bits (62), Expect = 2e-026
Identities = 71/74 (95%)
Strand = Plus / Minus
Query: 452 agcagcggtgctctatctcctatgtacagcttagcaattcagtgtggaagggctttgtgc 511
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 362 agcagcggtgctctatcttctatgtacagcttagcaattcagtatggaagggctttgtgc 303
Query: 512 ttactgatatagct 525
|||||||| |||||
Sbjct: 302 ttactgatgtagct 289
>gb|CW457933.1|CW457933 fsbb001f203p11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f203p11, DNA
sequence
Length = 772
Score = 139 bits (70), Expect = 4e-031
Identities = 106/117 (90%), Gaps = 2/117 (1%)
Strand = Plus / Plus
Query: 559 tagctatctagtttaggagtccagatttgtgattttggcaatttaggtattcagttcttt 618
|||||||||||||||||||||||||||| |||||||||||||| || | ||| || ||
Sbjct: 55 tagctatctagtttaggagtccagatttctgattttggcaattgagatcatcaatt--tt 112
Query: 619 tgtacattggttgagctagttgtgtgtagctgattctattgcagcaccaccggtgag 675
||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 113 tgtacattggtagcgctagttgtgtgtagctgattctattgcagcagcaccggtgag 169
Score = 60.0 bits (30), Expect = 3e-007
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 488 attcagtgtggaagggctttgtgcttactgatatagct 525
||||||| |||||||||||||||||||||||| |||||
Sbjct: 22 attcagtatggaagggctttgtgcttactgatgtagct 59
>gb|CL180224.1|CL180224 104_389_10895844_148_31907_372 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10895844, DNA
sequence
Length = 692
Score = 123 bits (62), Expect = 2e-026
Identities = 71/74 (95%)
Strand = Plus / Plus
Query: 452 agcagcggtgctctatctcctatgtacagcttagcaattcagtgtggaagggctttgtgc 511
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 524 agcagcggtgctctatcttctatgtacagcttagcaattcagtatggaagggctttgtgc 583
Query: 512 ttactgatatagct 525
|||||||| |||||
Sbjct: 584 ttactgatgtagct 597
Score = 117 bits (59), Expect = 1e-024
Identities = 92/102 (90%), Gaps = 2/102 (1%)
Strand = Plus / Plus
Query: 559 tagctatctagtttaggagtccagatttgtgattttggcaatttaggtattcagttcttt 618
|||||||||||||||||||||||||||| |||||||||||||| || | ||| | |||
Sbjct: 593 tagctatctagtttaggagtccagatttctgattttggcaattgagatcatcaat--ttt 650
Query: 619 tgtacattggttgagctagttgtgtgtagctgattctattgc 660
||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 651 tgtacattggtagcgctagttgtgtgtagctgattctattgc 692
>gb|CW047812.1|CW047812 104_285_10512898_114_30216 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10512898, DNA
sequence
Length = 557
Score = 115 bits (58), Expect = 5e-024
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 452 agcagcggtgctctatctcctatgtacagcttagcaattcagtgtggaagggctttgtgc 511
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 479 agcagcggtgctctatcttctatgtacagcttagcaattcagtatggaagggctttgtgc 538
Query: 512 ttactgatatagct 525
||||||| |||||
Sbjct: 539 ctactgatgtagct 552
>gb|CL180223.1|CL180223 104_389_10895844_116_31908_372 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10895844, DNA
sequence
Length = 652
Score = 109 bits (55), Expect = 3e-022
Identities = 94/106 (88%), Gaps = 2/106 (1%)
Strand = Plus / Minus
Query: 570 tttaggagtccagatttgtgattttggcaatttaggtattcagttcttttgtacattggt 629
||||||||||||||||| || ||||||||||| || | ||| || |||||||||||||
Sbjct: 652 tttaggagtccagatttctgtttttggcaattgagatcatcaatt--tttgtacattggt 595
Query: 630 tgagctagttgtgtgtagctgattctattgcagcaccaccggtgag 675
| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 594 agcgctagttgtgtgtagctgattctattgcagcagcaccggtgag 549
>gb|BE367594.1|BE367594 PI1_9_E12.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 569
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcga 20
||||||||||||||||||||
Sbjct: 18 gaattcggcacgaggctcga 37
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 158,903
Number of Sequences: 832831
Number of extensions: 158903
Number of successful extensions: 42379
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42349
Number of HSP's gapped (non-prelim): 30
length of query: 675
length of database: 491,359,669
effective HSP length: 19
effective length of query: 656
effective length of database: 475,535,880
effective search space: 311951537280
effective search space used: 311951537280
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)