BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115474.2.1
(798 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF656016.1|BF656016 FM1_42_H07.b1_A003 Floral-Induced Me... 698 0.0
gb|CW137391.1|CW137391 104_523_11119267_116_34868_068 Sorgh... 601 e-170
gb|AW287088.2|AW287088 LG1_265_D02.b2_A002 Light Grown 1 (L... 577 e-163
gb|AW746450.1|AW746450 WS1_53_E10.b1_A002 Water-stressed 1 ... 424 e-117
gb|BE363346.1|BE363346 WS1_62_D02.b1_A002 Water-stressed 1 ... 391 e-107
gb|CW137392.1|CW137392 104_523_11119267_148_34864_068 Sorgh... 343 2e-092
gb|CW351095.1|CW351095 fsbb001f012l11f0 Sorghum methylation... 343 2e-092
gb|BE594066.1|BE594066 WS1_101_G07.b1_A002 Water-stressed 1... 283 1e-074
gb|BE363387.1|BE363387 WS1_62_D02.g1_A002 Water-stressed 1 ... 272 5e-071
gb|BE593754.1|BE593754 WS1_101_G07.g1_A002 Water-stressed 1... 268 7e-070
gb|BZ422508.1|BZ422508 id54f09.b1 WGS-SbicolorF (DH5a methy... 242 4e-062
gb|CL152970.1|CL152970 104_337_10780381_114_31367_013 Sorgh... 222 4e-056
gb|CD424714.1|CD424714 SA1_7_H11.b1_A002 Salicylic acid-tre... 190 1e-046
gb|CD423620.1|CD423620 SA1_24_A12.b1_A002 Salicylic acid-tr... 172 3e-041
gb|BM329524.1|BM329524 PIC1_39_B11.g1_A002 Pathogen-infecte... 74 2e-011
gb|CL192498.1|CL192498 104_415_10940286_114_32259_025 Sorgh... 48 0.001
gb|CW139497.1|CW139497 104_529_11135270_116_34907_053 Sorgh... 46 0.005
gb|CF756802.1|CF756802 DSAF1_9_D10.g1_A011 Drought-stressed... 40 0.30
>gb|BF656016.1|BF656016 FM1_42_H07.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 468
Score = 698 bits (352), Expect = 0.0
Identities = 434/460 (94%), Gaps = 1/460 (0%)
Strand = Plus / Minus
Query: 29 aacataaccatccatttcagatttcaagcattgttcatgtgtcgcctggataacatctgc 88
||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 468 aacataaccgtccatttcagattttaagcattgttcatgtgtcgcctgaataacatctgc 409
Query: 89 tgtcatggctaatattggagttcgccactgccgaacccctacgcat-tctggtggggctt 147
||||||||||||||||||||||||||||||||| |||||| || | || |||||||||
Sbjct: 408 tgtcatggctaatattggagttcgccactgccggacccctgcgagtctccagtggggctt 349
Query: 148 ctccacgttctatttgctcatttagatctctttccatcactctaatcctttttgtggctt 207
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 348 ctccacgttctatttgctcatttagatctctttccatcactctaatccttctcgtggctt 289
Query: 208 caaatccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaattgtgaggag 267
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 288 caaatccatccatttcgggcatctgtatgtccatgaaacaagcatcaaatctgtgaggag 229
Query: 268 gtttcagcagtgtgattgcttccttcccactgtcagcacaagttacttccgcgccatatt 327
||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||
Sbjct: 228 gtttcagcagtgtgattgctttcttcccactatcagcacaagttacttctgcgccatatt 169
Query: 328 tctttagagcgcctgcagcaaccttgagatttacaatattatcatcaaccactatgattc 387
|||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 168 tcttcagagcgcctgcagcaaccttgagatttacaatgttgtcatcaaccactatgattc 109
Query: 388 gcttcttgtgaagaaggctgcccagtgttgaattgccgactactccattcctgcaatgca 447
| |||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct: 108 gtttcttgtgaagaaggctgccaagtgttgaattgccaactaccccattcctgcaatgca 49
Query: 448 gtttatctatcccacccaatgctctttgtagcgaaacctg 487
||||||||||||||||||||||||||||||| ||||||||
Sbjct: 48 gtttatctatcccacccaatgctctttgtagggaaacctg 9
>gb|CW137391.1|CW137391 104_523_11119267_116_34868_068 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11119267, DNA
sequence
Length = 626
Score = 601 bits (303), Expect = e-170
Identities = 357/375 (95%)
Strand = Plus / Minus
Query: 213 ccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaattgtgaggaggtttc 272
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 375 ccatccatttcgggcatctgtatgtccatgaaacaagcatcaaatctgtgaggaggtttc 316
Query: 273 agcagtgtgattgcttccttcccactgtcagcacaagttacttccgcgccatatttcttt 332
|||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 315 agcagtgtgattgctttcttcccactatcagcacaagttacttctgcgccatatttcttc 256
Query: 333 agagcgcctgcagcaaccttgagatttacaatattatcatcaaccactatgattcgcttc 392
|||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||
Sbjct: 255 agagcgcctgcagcaaccttgagatttacaatgttgtcatcaaccactatgattcgtttc 196
Query: 393 ttgtgaagaaggctgcccagtgttgaattgccgactactccattcctgcaatgcagttta 452
||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 195 ttgtgaagaaggctgccaagtgttgaattgccaactaccccattcctgcaatgcagttta 136
Query: 453 tctatcccacccaatgctctttgtagcgaaacctgaagcatgcttgcacgaagtggcttc 512
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 135 tctatcccacccaatgctctttgtagggaaacctgaagcatgcttgcacgaagtggcttc 76
Query: 513 ataattacattcaagttatattccctgaatatatgtgaattgctcttgacagaactttta 572
||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||
Sbjct: 75 ataattacattcaagttatattccctgaatatatgcaaactgcttttgacagaactttta 16
Query: 573 gggttctccaaaaga 587
|||||||||||||||
Sbjct: 15 gggttctccaaaaga 1
Score = 161 bits (81), Expect = 1e-037
Identities = 102/109 (93%)
Strand = Plus / Minus
Query: 105 ggagttcgccactgccgaacccctacgcattctggtggggcttctccacgttctatttgc 164
||||||||||||||||| |||||| |||| || ||||||||||||||||||||||||||
Sbjct: 626 ggagttcgccactgccggacccctgcgcactccagtggggcttctccacgttctatttgc 567
Query: 165 tcatttagatctctttccatcactctaatcctttttgtggcttcaaatc 213
||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 566 tcatttagatctctttccatcactctaatccttctcgtggcttcaaatc 518
>gb|AW287088.2|AW287088 LG1_265_D02.b2_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 447
Score = 577 bits (291), Expect = e-163
Identities = 349/367 (95%), Gaps = 1/367 (0%)
Strand = Plus / Minus
Query: 432 ccattcctgcaatgcagtttatctatcccacccaatgctctttgtagcgaaacctgaagc 491
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 446 ccattcctgcaatgcagtttatctatcccacccaatgctctttgtagggaaacctgaagc 387
Query: 492 atgcttgcacgaagtggcttcataattacattcaagttatattccctgaatatatgtgaa 551
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 386 atgcttgcacgaagtggcttcataattacattcaagttatattccctgaatatatgcaaa 327
Query: 552 ttgctcttgacagaacttttagggttctccaaaagaaataactttgtagagtctggctga 611
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ctgcttttgacagaacttttagggttctccaaaagaaataactttgtagagtctggctga 267
Query: 612 tacaatgttcctcaatttagtaaccaaaagaggcatggagtgggattctttcagccaggt 671
| | ||||||||||||||||||||||| ||||||| ||||||||||| | |||||||||
Sbjct: 266 t-ctttgttcctcaatttagtaaccaaatgaggcatagagtgggattcctccagccaggt 208
Query: 672 ttctttgtcaatgagcacaagctttgcaatctgtgatccacaattatttttagaaatata 731
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 207 ttctttgtcaatgagcacaagctttgcaatctgtgatccacaattaattttagaaatata 148
Query: 732 ctgatctaggtcagttgtcaattcagtctgaactcccagtctttgcaaatgatacttagt 791
|||||||||||||||||||||||| || ||||| |||||||| |||||||| ||||||||
Sbjct: 147 ctgatctaggtcagttgtcaattcggtgtgaacccccagtctctgcaaatggtacttagt 88
Query: 792 aaccttg 798
|||||||
Sbjct: 87 aaccttg 81
>gb|AW746450.1|AW746450 WS1_53_E10.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 545
Score = 424 bits (214), Expect = e-117
Identities = 271/289 (93%), Gaps = 1/289 (0%)
Strand = Plus / Minus
Query: 510 ttcataattacattcaagttatattccctgaatatatgtgaattgctcttgacagaactt 569
|||||||||||||||||||||||||||||||||||||| || |||| |||||||||||
Sbjct: 545 ttcataattacattcaagttatattccctgaatatatgcaaactgcttttgacagaactn 486
Query: 570 ttagggttctccaaaagaaataactttgtagagtctggctgatacaatgttcctcaattt 629
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 485 ttagggttctccaaaagaaataactttgtagagtctggctgat-ctttgttcctcaattt 427
Query: 630 agtaaccaaaagaggcatggagtgggattctttcagccaggtttctttgtcaatgagcac 689
|||||||||| ||||||| ||||||||||| | |||||||||||||||||||||||||||
Sbjct: 426 agtaaccaaatgaggcatagagtgggattcctccagccaggtttctttgtcaatgagcac 367
Query: 690 aagctttgcaatctgtgatccacaattatttttagaaatatactgatctaggtcagttgt 749
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 366 aagctttgcaatctgtgatccacaattaattttagaaatatactgatctaggtcagttgt 307
Query: 750 caattcagtctgaactcccagtctttgcaaatgatacttagtaaccttg 798
|||||| || ||||| |||||||| |||||||| |||||||||||||||
Sbjct: 306 caattcggtgtgaacccccagtctctgcaaatggtacttagtaaccttg 258
>gb|BE363346.1|BE363346 WS1_62_D02.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 248
Score = 391 bits (197), Expect = e-107
Identities = 237/249 (95%), Gaps = 1/249 (0%)
Strand = Plus / Minus
Query: 496 ttgcacgaagtggcttcataattacattcaagttatattccctgaatatatgtgaattgc 555
|||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||
Sbjct: 248 ttgcacgaagtggcttcataatcacattcaagttatattccctgaatatatgcaaactgc 189
Query: 556 tcttgacagaacttttagggttctccaaaagaaataactttgtagagtctggctgataca 615
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 188 ttttgacagaacttttagggttctccaaaagaaataactttgtagagtctggctgat-ct 130
Query: 616 atgttcctcaatttagtaaccaaaagaggcatggagtgggattctttcagccaggtttct 675
|||||||||||||||||||||||| ||||||| ||||||||||| | |||||||||||||
Sbjct: 129 atgttcctcaatttagtaaccaaatgaggcatagagtgggattcctccagccaggtttct 70
Query: 676 ttgtcaatgagcacaagctttgcaatctgtgatccacaattatttttagaaatatactga 735
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 69 ttgtcaatgagcacaagctttgcaatctgtgatccacaattaattttagaaatatactga 10
Query: 736 tctaggtca 744
|||||||||
Sbjct: 9 tctaggtca 1
>gb|CW137392.1|CW137392 104_523_11119267_148_34864_068 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11119267, DNA
sequence
Length = 581
Score = 343 bits (173), Expect = 2e-092
Identities = 203/213 (95%)
Strand = Plus / Plus
Query: 1 acaattgctcgccctcgaatggcttggaaacataaccatccatttcagatttcaagcatt 60
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 56 acaattgctcgccctcgaatggcttggaaacataaccgtccatttcagattttaagcatt 115
Query: 61 gttcatgtgtcgcctggataacatctgctgtcatggctaatattggagttcgccactgcc 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 gttcatgtgtcgcctgaataacatctgctgtcatggctaatattggagttcgccactgcc 175
Query: 121 gaacccctacgcattctggtggggcttctccacgttctatttgctcatttagatctcttt 180
| |||||| |||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 ggacccctgcgcactccagtggggcttctccacgttctatttgctcatttagatctcttt 235
Query: 181 ccatcactctaatcctttttgtggcttcaaatc 213
||||||||||||||||| | |||||||||||||
Sbjct: 236 ccatcactctaatccttctcgtggcttcaaatc 268
Score = 268 bits (135), Expect = 7e-070
Identities = 162/171 (94%)
Strand = Plus / Plus
Query: 213 ccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaattgtgaggaggtttc 272
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 411 ccatccatttcgggcatctgtatgtccatgaaacaagcatcaaatctgtgaggaggtttc 470
Query: 273 agcagtgtgattgcttccttcccactgtcagcacaagttacttccgcgccatatttcttt 332
|||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 471 agcagtgtgattgctttcttcccactatcagcacaagttacttctgcgccatatttcttc 530
Query: 333 agagcgcctgcagcaaccttgagatttacaatattatcatcaaccactatg 383
|||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 531 agagcgcctgcagcaaccttgagatttacaatgttgtcatcaaccactatg 581
>gb|CW351095.1|CW351095 fsbb001f012l11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f012l11, DNA
sequence
Length = 828
Score = 343 bits (173), Expect = 2e-092
Identities = 203/213 (95%)
Strand = Plus / Minus
Query: 1 acaattgctcgccctcgaatggcttggaaacataaccatccatttcagatttcaagcatt 60
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 381 acaattgctcgccctcgaatggcttggaaacataaccgtccatttcagattttaagcatt 322
Query: 61 gttcatgtgtcgcctggataacatctgctgtcatggctaatattggagttcgccactgcc 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttcatgtgtcgcctgaataacatctgctgtcatggctaatattggagttcgccactgcc 262
Query: 121 gaacccctacgcattctggtggggcttctccacgttctatttgctcatttagatctcttt 180
| |||||| |||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggacccctgcgcactccagtggggcttctccacgttctatttgctcatttagatctcttt 202
Query: 181 ccatcactctaatcctttttgtggcttcaaatc 213
||||||||||||||||| | |||||||||||||
Sbjct: 201 ccatcactctaatccttctcgtggcttcaaatc 169
>gb|BE594066.1|BE594066 WS1_101_G07.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 521
Score = 283 bits (143), Expect = 1e-074
Identities = 167/175 (95%)
Strand = Plus / Minus
Query: 1 acaattgctcgccctcgaatggcttggaaacataaccatccatttcagatttcaagcatt 60
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 182 acaattgctcgccctcgaatggcttggaaacataaccgtccatttcagattttaagcatt 123
Query: 61 gttcatgtgtcgcctggataacatctgctgtcatggctaatattggagttcgccactgcc 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 gttcatgtgtcgcctgaataacatctgctgtcatggctaatattggagttcgccactgcc 63
Query: 121 gaacccctacgcattctggtggggcttctccacgttctatttgctcatttagatc 175
| |||||| |||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 62 ggacccctgcgcactccagtggggcttctccacgttctatttgctcatttagatc 8
>gb|BE363387.1|BE363387 WS1_62_D02.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 653
Score = 272 bits (137), Expect = 5e-071
Identities = 161/169 (95%)
Strand = Plus / Minus
Query: 1 acaattgctcgccctcgaatggcttggaaacataaccatccatttcagatttcaagcatt 60
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 169 acaattgctcgccctcgaatggcttggaaacataaccgtccatttcagattttaagcatt 110
Query: 61 gttcatgtgtcgcctggataacatctgctgtcatggctaatattggagttcgccactgcc 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 gttcatgtgtcgcctgaataacatctgctgtcatggctaatattggagttcgccactgcc 50
Query: 121 gaacccctacgcattctggtggggcttctccacgttctatttgctcatt 169
| |||||| |||| || |||||||||||||||||||||||||||||||
Sbjct: 49 ggacccctgcgcactccagtggggcttctccacgttctatttgctcatt 1
>gb|BE593754.1|BE593754 WS1_101_G07.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 676
Score = 268 bits (135), Expect = 7e-070
Identities = 159/167 (95%)
Strand = Plus / Minus
Query: 1 acaattgctcgccctcgaatggcttggaaacataaccatccatttcagatttcaagcatt 60
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 167 acaattgctcgccctcgaatggcttggaaacataaccgtccatttcagattttaagcatt 108
Query: 61 gttcatgtgtcgcctggataacatctgctgtcatggctaatattggagttcgccactgcc 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 gttcatgtgtcgcctgaataacatctgctgtcatggctaatattggagttcgccactgcc 48
Query: 121 gaacccctacgcattctggtggggcttctccacgttctatttgctca 167
| |||||| |||| || |||||||||||||||||||||||||||||
Sbjct: 47 ggacccctgcgcactccagtggggcttctccacgttctatttgctca 1
>gb|BZ422508.1|BZ422508 id54f09.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone id54f09 5', DNA sequence
Length = 703
Score = 242 bits (122), Expect = 4e-062
Identities = 146/154 (94%)
Strand = Plus / Minus
Query: 1 acaattgctcgccctcgaatggcttggaaacataaccatccatttcagatttcaagcatt 60
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 164 acaattgctcgccctcgaatggcttggaaacataaccgtccatttcagattttaagcatt 105
Query: 61 gttcatgtgtcgcctggataacatctgctgtcatggctaatattggagttcgccactgcc 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 gttcatgtgtcgcctgaataacatctgctgtcatggctaatattggagttcgccactgcc 45
Query: 121 gaacccctacgcattctggtggggcttctccacg 154
| |||||| |||| || ||||||||||||||||
Sbjct: 44 ggacccctgcgcactccagtggggcttctccacg 11
>gb|CL152970.1|CL152970 104_337_10780381_114_31367_013 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10780381, DNA
sequence
Length = 482
Score = 222 bits (112), Expect = 4e-056
Identities = 130/136 (95%)
Strand = Plus / Plus
Query: 663 cagccaggtttctttgtcaatgagcacaagctttgcaatctgtgatccacaattattttt 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 5 cagccaggtttctttgtcaatgagcacaagctttgcaatctgtgatccacaattaatttt 64
Query: 723 agaaatatactgatctaggtcagttgtcaattcagtctgaactcccagtctttgcaaatg 782
||||||||||||||||||||||||||||||||| || ||||| |||||||| ||||||||
Sbjct: 65 agaaatatactgatctaggtcagttgtcaattcggtgtgaacccccagtctctgcaaatg 124
Query: 783 atacttagtaaccttg 798
|||||||||||||||
Sbjct: 125 gtacttagtaaccttg 140
>gb|CD424714.1|CD424714 SA1_7_H11.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_7_H11_A002 3', mRNA sequence
Length = 671
Score = 190 bits (96), Expect = 1e-046
Identities = 105/108 (97%)
Strand = Plus / Minus
Query: 1 acaattgctcgccctcgaatggcttggaaacataaccatccatttcagatttcaagcatt 60
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 108 acaattgctcgccctcgaatggcttggaaacataaccgtccatttcagattttaagcatt 49
Query: 61 gttcatgtgtcgcctggataacatctgctgtcatggctaatattggag 108
|||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 48 gttcatgtgtcgcctgaataacatctgctgtcatggctaatattggag 1
>gb|CD423620.1|CD423620 SA1_24_A12.b1_A002 Salicylic acid-treated seedlings Sorghum
bicolor cDNA clone SA1_24_A12_A002 3', mRNA sequence
Length = 726
Score = 172 bits (87), Expect = 3e-041
Identities = 96/99 (96%)
Strand = Plus / Minus
Query: 1 acaattgctcgccctcgaatggcttggaaacataaccatccatttcagatttcaagcatt 60
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 99 acaattgctcgccctcgaatggcttggaaacataaccgtccatttcagattttaagcatt 40
Query: 61 gttcatgtgtcgcctggataacatctgctgtcatggcta 99
|||||||||||||||| ||||||||||||||||||||||
Sbjct: 39 gttcatgtgtcgcctgaataacatctgctgtcatggcta 1
>gb|BM329524.1|BM329524 PIC1_39_B11.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 672
Score = 73.8 bits (37), Expect = 2e-011
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 1 acaattgctcgccctcgaatggcttggaaacataacc 37
|||||||||||||||||||||||||||||||||||||
Sbjct: 38 acaattgctcgccctcgaatggcttggaaacataacc 2
>gb|CL192498.1|CL192498 104_415_10940286_114_32259_025 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10940286, DNA
sequence
Length = 704
Score = 48.1 bits (24), Expect = 0.001
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 213 ccatccatttcaggcatctgtatgtccatgaaacaa 248
||||||||||| |||||||| |||||||||| ||||
Sbjct: 156 ccatccatttcgggcatctgaatgtccatgagacaa 121
>gb|CW139497.1|CW139497 104_529_11135270_116_34907_053 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11135270, DNA
sequence
Length = 679
Score = 46.1 bits (23), Expect = 0.005
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 213 ccatccatttcaggcatctgtatgtccatga 243
||||||||||| |||||||| ||||||||||
Sbjct: 34 ccatccatttcgggcatctgaatgtccatga 4
>gb|CF756802.1|CF756802 DSAF1_9_D10.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_9_D10_A011 3', mRNA sequence
Length = 256
Score = 40.1 bits (20), Expect = 0.30
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 40 ccatttcagatttcaagcattgtt 63
||||||||| ||||||||||||||
Sbjct: 233 ccatttcagttttcaagcattgtt 210
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 218,670
Number of Sequences: 832831
Number of extensions: 218670
Number of successful extensions: 59358
Number of sequences better than 0.5: 18
Number of HSP's better than 0.5 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59326
Number of HSP's gapped (non-prelim): 29
length of query: 798
length of database: 491,359,669
effective HSP length: 20
effective length of query: 778
effective length of database: 474,703,049
effective search space: 369318972122
effective search space used: 369318972122
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)