BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115208.2.3
(672 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG047687.1|BG047687 OV1_26_F01.b1_A002 Ovary 1 (OV1) Sor... 426 e-117
gb|CW070516.1|CW070516 104_321_10526807_1_30090 Sorghum met... 424 e-117
gb|CF484496.1|CF484496 POL1_25_E03.g1_A002 Pollen Sorghum b... 402 e-110
gb|BG048012.1|BG048012 OV1_26_F01.g1_A002 Ovary 1 (OV1) Sor... 375 e-102
gb|CF484415.1|CF484415 POL1_25_E03.b1_A002 Pollen Sorghum b... 341 5e-092
gb|CW045891.1|CW045891 104_282_10509838_114_30229 Sorghum m... 238 5e-061
gb|CW333518.1|CW333518 104_831_11481987_116_36043_006 Sorgh... 228 5e-058
gb|CW333499.1|CW333499 104_831_11481987_148_36044_006 Sorgh... 220 1e-055
gb|CF480672.1|CF480672 POL1_67_E06.b1_A002 Pollen Sorghum b... 170 1e-040
gb|CF486575.1|CF486575 POL1_38_B08.g1_A002 Pollen Sorghum b... 159 4e-037
gb|CW347590.1|CW347590 fsbb001f007i24k0 Sorghum methylation... 157 2e-036
gb|CF489723.1|CF489723 POL1_59_F09.b1_A002 Pollen Sorghum b... 139 4e-031
gb|CF484935.1|CF484935 POL1_28_A11.g1_A002 Pollen Sorghum b... 131 9e-029
gb|CW347589.1|CW347589 fsbb001f007i24f0 Sorghum methylation... 113 2e-023
gb|BG464520.1|BG464520 EM1_70_G05.g1_A002 Embryo 1 (EM1) So... 100 3e-019
gb|CF484277.1|CF484277 POL1_4_F09.b1_A002 Pollen Sorghum bi... 68 1e-009
gb|CF485848.1|CF485848 POL1_34_C02.b1_A002 Pollen Sorghum b... 52 7e-005
gb|CW478498.1|CW478498 fsbb001f236g18f0 Sorghum methylation... 44 0.016
gb|CL175536.1|CL175536 104_381_10892511_148_31764_111 Sorgh... 40 0.26
gb|CW186040.1|CW186040 104_603_11166358_116_36700_081 Sorgh... 40 0.26
gb|CW191719.1|CW191719 104_613_11178646_116_36938_081 Sorgh... 40 0.26
gb|CW232352.1|CW232352 104_685_11212773_116_37488_095 Sorgh... 40 0.26
gb|CW232353.1|CW232353 104_685_11212773_148_37487_095 Sorgh... 40 0.26
>gb|BG047687.1|BG047687 OV1_26_F01.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 437
Score = 426 bits (215), Expect = e-117
Identities = 278/299 (92%)
Strand = Plus / Plus
Query: 162 agtggtcgccggaggtgaggaagacgtacaacctgctggacacggtgagccggcacacga 221
||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 7 agtggtcgccggaggcgagggtgacgtacaacctgctggacgcggtgagccggcacacga 66
Query: 222 tccaggtgtacccgcggtcatggacggcaatcatgctgacgttcgacaacgcgggcatgt 281
|||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 67 tccaggtgtacccgaggtcatggacggcgattatgctgacgttcgacaacgcgggcatgt 126
Query: 282 ggagcgtgcattccaacatctgggagcggtactacctcggggagcagttctacatcagcg 341
||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 127 ggagcgtccggtccaacatctgggagcgctactacctcggggagcagttctacatcagcg 186
Query: 342 tcgtctcgccggcgcgatcactgcgcgacgagtacaacatgcccgacaacgccctccgct 401
|| ||||||||| || || ||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 187 tcatctcgccggagcactcgctgcgcgacgagtacaacatgccggacaacgacctccgct 246
Query: 402 gcggcaaggtcgtggggctgccgctgccgccgtcctacgcccccgcgcgctaagatgac 460
|||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||
Sbjct: 247 gcggcaaggtcgtggggctgccgctgccgccgtcctactccgccgcgcgctaaaatgac 305
>gb|CW070516.1|CW070516 104_321_10526807_1_30090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10526807, DNA
sequence
Length = 622
Score = 424 bits (214), Expect = e-117
Identities = 289/314 (92%)
Strand = Plus / Minus
Query: 147 ggatgggccccgggaagtggtcgccggaggtgaggaagacgtacaacctgctggacacgg 206
||||||| || ||| ||||||||||||||| |||| ||||||||||||||||||| |||
Sbjct: 352 ggatggggcctgggcagtggtcgccggaggcgagggtgacgtacaacctgctggacgcgg 293
Query: 207 tgagccggcacacgatccaggtgtacccgcggtcatggacggcaatcatgctgacgttcg 266
||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||
Sbjct: 292 tgagccggcacacgatccaggtgtacccgaggtcatggacggcgattatgctgacgttcg 233
Query: 267 acaacgcgggcatgtggagcgtgcattccaacatctgggagcggtactacctcggggagc 326
|||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||
Sbjct: 232 acaacgcgggcatgtggagcgtccggtccaacatctgggagcgctactacctcggggagc 173
Query: 327 agttctacatcagcgtcgtctcgccggcgcgatcactgcgcgacgagtacaacatgcccg 386
||||||||||||||||| ||||||||| || || ||||||||||||||||||||||| |
Sbjct: 172 agttctacatcagcgtcatctcgccggagcactcgctgcgcgacgagtacaacatgccgg 113
Query: 387 acaacgccctccgctgcggcaaggtcgtggggctgccgctgccgccgtcctacgcccccg 446
|||||| ||||||| |||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 112 acaacgacctccgccgcggcaaggtcgtggggctgccgctgccgccgtcctactccgccg 53
Query: 447 cgcgctaagatgac 460
|||||||| |||||
Sbjct: 52 cgcgctaaaatgac 39
Score = 214 bits (108), Expect = 8e-054
Identities = 138/148 (93%)
Strand = Plus / Minus
Query: 1 cgtgccccccgccgtgaacggtcccctccatgtcatccccaatgtcatcaccgccgagtt 60
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 594 cgtgccccccgccgtgaacggacccctccatgtcgtccccaatgtcatcaccgccgagtt 535
Query: 61 ccgcaccttcatcgagatcgtcttcgagaaccccgagaagagcatagactccctccacgt 120
| |||||||||||||||| ||||| |||||||||||||||||| | |||||| ||||| |
Sbjct: 534 cggcaccttcatcgagatggtcttggagaaccccgagaagagcttggactccatccacct 475
Query: 121 cgatggctacgccttcttcggcgtcggg 148
||| ||||||||||||||||||||||||
Sbjct: 474 cgacggctacgccttcttcggcgtcggg 447
>gb|CF484496.1|CF484496 POL1_25_E03.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_25_E03_A002 5', mRNA sequence
Length = 545
Score = 402 bits (203), Expect = e-110
Identities = 257/275 (93%)
Strand = Plus / Plus
Query: 12 ccgtgaacggtcccctccatgtcatccccaatgtcatcaccgccgagttccgcaccttca 71
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 271 ccgtgaacggacccctccatgtcgtccccaatgtcatcaccgccgagttccgcaccttca 330
Query: 72 tcgagatcgtcttcgagaaccccgagaagagcatagactccctccacgtcgatggctacg 131
|||||||||||||||||||||||||||||||| | |||||| ||||| |||| |||||||
Sbjct: 331 tcgagatcgtcttcgagaaccccgagaagagcttggactccatccacctcgacggctacg 390
Query: 132 ccttcttcggcgtcgggatgggccccgggaagtggtcgccggaggtgaggaagacgtaca 191
|||||||||||||||||||||| || ||| ||||||||||||||| |||| ||||||||
Sbjct: 391 ccttcttcggcgtcgggatggggcctgggcagtggtcgccggaggcgagggtgacgtaca 450
Query: 192 acctgctggacacggtgagccggcacacgatccaggtgtacccgcggtcatggacggcaa 251
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 451 acctgctggacgcggtgagccggcacacgatccaggtgtacccgaggtcatggacggcga 510
Query: 252 tcatgctgacgttcgacaacgcgggcatgtggagc 286
| |||||||||||| ||||||||||||||||||||
Sbjct: 511 ttatgctgacgttctacaacgcgggcatgtggagc 545
>gb|BG048012.1|BG048012 OV1_26_F01.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 551
Score = 375 bits (189), Expect = e-102
Identities = 240/257 (93%)
Strand = Plus / Plus
Query: 204 cggtgagccggcacacgatccaggtgtacccgcggtcatggacggcaatcatgctgacgt 263
|||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||
Sbjct: 1 cggtgagccggcacacgatccaggtgtacccgaggtcatggacggcgattatgctgacgt 60
Query: 264 tcgacaacgcgggcatgtggagcgtgcattccaacatctgggagcggtactacctcgggg 323
||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||
Sbjct: 61 tcgacaacgcgggcatgtggagcgtccggtccaacatctgggagcgctactacctcgggg 120
Query: 324 agcagttctacatcagcgtcgtctcgccggcgcgatcactgcgcgacgagtacaacatgc 383
|||||||||||||||||||| ||||||||| || || ||||||||||||||||||||||
Sbjct: 121 agcagttctacatcagcgtcatctcgccggagcactcgctgcgcgacgagtacaacatgc 180
Query: 384 ccgacaacgccctccgctgcggcaaggtcgtggggctgccgctgccgccgtcctacgccc 443
| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 181 cggacaacgacctccgctgcggcaaggtcgtggggctgccgctgccgccgtcctactccg 240
Query: 444 ccgcgcgctaagatgac 460
||||||||||| |||||
Sbjct: 241 ccgcgcgctaaaatgac 257
Score = 52.0 bits (26), Expect = 7e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 500 caaactcaaaagaacaaatacgaaagaagc 529
|||||||||||||||||| |||||||||||
Sbjct: 376 caaactcaaaagaacaaagacgaaagaagc 405
>gb|CF484415.1|CF484415 POL1_25_E03.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_25_E03_A002 3', mRNA sequence
Length = 564
Score = 341 bits (172), Expect = 5e-092
Identities = 223/240 (92%)
Strand = Plus / Plus
Query: 221 atccaggtgtacccgcggtcatggacggcaatcatgctgacgttcgacaacgcgggcatg 280
||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 1 atccaggtgtacccgaggtcatggacggcgattatgctgacgttcgacaacgcgggcatg 60
Query: 281 tggagcgtgcattccaacatctgggagcggtactacctcggggagcagttctacatcagc 340
|||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 61 tggagcgtccggtccaacatctgggagcgctactacctcggggagcagttctacatcagc 120
Query: 341 gtcgtctcgccggcgcgatcactgcgcgacgagtacaacatgcccgacaacgccctccgc 400
||| ||||||||| || || ||||||||||||||||||||||| ||||||| |||||||
Sbjct: 121 gtcatctcgccggagcactcgctgcgcgacgagtacaacatgccggacaacgacctccgc 180
Query: 401 tgcggcaaggtcgtggggctgccgctgccgccgtcctacgcccccgcgcgctaagatgac 460
||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||
Sbjct: 181 tgcggcaaggtcgtggggctgccgctgccgccgtcctactccgccgcgcgctaaaatgac 240
Score = 52.0 bits (26), Expect = 7e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 500 caaactcaaaagaacaaatacgaaagaagc 529
|||||||||||||||||| |||||||||||
Sbjct: 359 caaactcaaaagaacaaagacgaaagaagc 388
Score = 42.1 bits (21), Expect = 0.065
Identities = 28/29 (96%), Gaps = 1/29 (3%)
Strand = Plus / Plus
Query: 591 aaaaaatcat-gtaatgggagttatatat 618
|||||||||| ||||||||||||||||||
Sbjct: 518 aaaaaatcattgtaatgggagttatatat 546
>gb|CW045891.1|CW045891 104_282_10509838_114_30229 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10509838, DNA
sequence
Length = 625
Score = 238 bits (120), Expect = 5e-061
Identities = 141/148 (95%)
Strand = Plus / Minus
Query: 1 cgtgccccccgccgtgaacggtcccctccatgtcatccccaatgtcatcaccgccgagtt 60
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 164 cgtgccccccgccgtgaacggacccctccatgtcgtccccaatgtcatcaccgccgagtt 105
Query: 61 ccgcaccttcatcgagatcgtcttcgagaaccccgagaagagcatagactccctccacgt 120
||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||| |
Sbjct: 104 ccgcaccttcatcgagatcgtcttcgagaaccccgagaagagcttggactccatccacct 45
Query: 121 cgatggctacgccttcttcggcgtcggg 148
||| ||||||||||||||||||||||||
Sbjct: 44 cgacggctacgccttcttcggcgtcggg 17
>gb|CW333518.1|CW333518 104_831_11481987_116_36043_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481987, DNA
sequence
Length = 600
Score = 228 bits (115), Expect = 5e-058
Identities = 220/255 (86%)
Strand = Plus / Plus
Query: 185 acgtacaacctgctggacacggtgagccggcacacgatccaggtgtacccgcggtcatgg 244
||||||||||| |||||||||||||||||||||||| |||||||||||||| |||| |||
Sbjct: 250 acgtacaacctcctggacacggtgagccggcacacggtccaggtgtacccgaggtcgtgg 309
Query: 245 acggcaatcatgctgacgttcgacaacgcgggcatgtggagcgtgcattccaacatctgg 304
||||| | ||| |||||||||||||||||||||||||||| | | ||||||||||||
Sbjct: 310 acggcggtgatgatgacgttcgacaacgcgggcatgtggagtatccggtccaacatctgg 369
Query: 305 gagcggtactacctcggggagcagttctacatcagcgtcgtctcgccggcgcgatcactg 364
||| || | |||||||| |||||| | |||||||||||| |||||||| ||| || ||
Sbjct: 370 gagaggaattacctcggcgagcagctgtacatcagcgtcacctcgccggagcggtcgctc 429
Query: 365 cgcgacgagtacaacatgcccgacaacgccctccgctgcggcaaggtcgtggggctgccg 424
| ||||||||||||||||| || | | ||||||||||||||||||||| || |||||
Sbjct: 430 agggacgagtacaacatgccagagaccagcctccgctgcggcaaggtcgtcggcctgcca 489
Query: 425 ctgccgccgtcctac 439
|||||||||||||||
Sbjct: 490 ctgccgccgtcctac 504
Score = 113 bits (57), Expect = 2e-023
Identities = 87/97 (89%)
Strand = Plus / Plus
Query: 52 cgccgagttccgcaccttcatcgagatcgtcttcgagaaccccgagaagagcatagactc 111
||||||||||||||||||||||||| | || ||||||||||||||||||||||| ||| |
Sbjct: 19 cgccgagttccgcaccttcatcgaggtggtgttcgagaaccccgagaagagcatcgacac 78
Query: 112 cctccacgtcgatggctacgccttcttcggcgtcggg 148
| ||||| |||| |||||||| ||||||| |||||||
Sbjct: 79 cttccacatcgacggctacgcattcttcgccgtcggg 115
>gb|CW333499.1|CW333499 104_831_11481987_148_36044_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481987, DNA
sequence
Length = 661
Score = 220 bits (111), Expect = 1e-055
Identities = 219/255 (85%)
Strand = Plus / Minus
Query: 185 acgtacaacctgctggacacggtgagccggcacacgatccaggtgtacccgcggtcatgg 244
||||||||||| ||||||||| |||||||||||||| |||||||||||||| |||| |||
Sbjct: 614 acgtacaacctcctggacacgttgagccggcacacggtccaggtgtacccgaggtcgtgg 555
Query: 245 acggcaatcatgctgacgttcgacaacgcgggcatgtggagcgtgcattccaacatctgg 304
||||| | ||| |||||||||||||||||||||||||||| | | ||||||||||||
Sbjct: 554 acggcggtgatgatgacgttcgacaacgcgggcatgtggagtatccggtccaacatctgg 495
Query: 305 gagcggtactacctcggggagcagttctacatcagcgtcgtctcgccggcgcgatcactg 364
||| || | |||||||| |||||| | |||||||||||| |||||||| ||| || ||
Sbjct: 494 gagaggaattacctcggcgagcagctgtacatcagcgtcacctcgccggagcggtcgctc 435
Query: 365 cgcgacgagtacaacatgcccgacaacgccctccgctgcggcaaggtcgtggggctgccg 424
| ||||||||||||||||| || | | ||||||||||||||||||||| || |||||
Sbjct: 434 agggacgagtacaacatgccagagaccagcctccgctgcggcaaggtcgtcggcctgcca 375
Query: 425 ctgccgccgtcctac 439
|||||||||||||||
Sbjct: 374 ctgccgccgtcctac 360
>gb|CF480672.1|CF480672 POL1_67_E06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_67_E06_A002 3', mRNA sequence
Length = 691
Score = 170 bits (86), Expect = 1e-040
Identities = 185/218 (84%)
Strand = Plus / Plus
Query: 222 tccaggtgtacccgcggtcatggacggcaatcatgctgacgttcgacaacgcgggcatgt 281
|||||||||||||| |||| |||||||| | ||| ||||||||||||||||||||||||
Sbjct: 3 tccaggtgtacccgaggtcgtggacggcggtgatgatgacgttcgacaacgcgggcatgt 62
Query: 282 ggagcgtgcattccaacatctgggagcggtactacctcggggagcagttctacatcagcg 341
|||| | | ||||||||||||||| || | |||||||| |||||| | ||||||||||
Sbjct: 63 ggagtatccggtccaacatctgggagaggaattacctcggcgagcagctgtacatcagcg 122
Query: 342 tcgtctcgccggcgcgatcactgcgcgacgagtacaacatgcccgacaacgccctccgct 401
|| |||||||| ||| || || | ||||||||||||||||| || | | ||||||||
Sbjct: 123 tcacctcgccggagcggtcgctcagggacgagtacaacatgccagagaccagcctccgct 182
Query: 402 gcggcaaggtcgtggggctgccgctgccgccgtcctac 439
||||||||||||| || ||||| |||||||||||||||
Sbjct: 183 gcggcaaggtcgtcggcctgccactgccgccgtcctac 220
>gb|CF486575.1|CF486575 POL1_38_B08.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_38_B08_A002 5', mRNA sequence
Length = 727
Score = 159 bits (80), Expect = 4e-037
Identities = 155/180 (86%)
Strand = Plus / Plus
Query: 52 cgccgagttccgcaccttcatcgagatcgtcttcgagaaccccgagaagagcatagactc 111
||||||||||||||||||||||||| | || ||||||||||||||||||||||| ||| |
Sbjct: 548 cgccgagttccgcaccttcatcgaggtggtgttcgagaaccccgagaagagcatcgacac 607
Query: 112 cctccacgtcgatggctacgccttcttcggcgtcgggatgggccccgggaagtggtcgcc 171
| ||||| |||| |||||||| ||||||| |||||| |||||||| || || ||| ||||
Sbjct: 608 cttccacatcgacggctacgcattcttcgccgtcggcatgggcccgggcaaatggacgcc 667
Query: 172 ggaggtgaggaagacgtacaacctgctggacacggtgagccggcacacgatccaggtgta 231
| | ||| ||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 668 agcgtgccggagtacgtacaacctcctggacacggtgagccggcacacggtccaggtgta 727
>gb|CW347590.1|CW347590 fsbb001f007i24k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f007i24, DNA
sequence
Length = 558
Score = 157 bits (79), Expect = 2e-036
Identities = 193/230 (83%), Gaps = 1/230 (0%)
Strand = Plus / Minus
Query: 211 ccggcacacgatccaggtgtaccc-gcggtcatggacggcaatcatgctgacgttcgaca 269
|||||||||| ||||||||||||| | |||| |||||||| | ||| ||||||||||||
Sbjct: 524 ccggcacacggtccaggtgtaccccgaggtcgtggacggcggtgatgatgacgttcgaca 465
Query: 270 acgcgggcatgtggagcgtgcattccaacatctgggagcggtactacctcggggagcagt 329
|||||||||||||||| | | ||||||||||||||| || | | |||||| ||||||
Sbjct: 464 acgcgggcatgtggagtatccggtccaacatctgggagaggaattccctcggcgagcagc 405
Query: 330 tctacatcagcgtcgtctcgccggcgcgatcactgcgcgacgagtacaacatgcccgaca 389
| |||||||||||| |||||||| ||| || || | ||||||||||||||||| || |
Sbjct: 404 tgtacatcagcgtcacctcgccggagcggtcgctcagggacgagtacaacatgccagaga 345
Query: 390 acgccctccgctgcggcaaggtcgtggggctgccgctgccgccgtcctac 439
| ||||||||||||||||||||| || ||||| ||||||||||| |||
Sbjct: 344 ccagcctccgctgcggcaaggtcgtcggcctgccactgccgccgtcntac 295
>gb|CF489723.1|CF489723 POL1_59_F09.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_59_F09_A002 3', mRNA sequence
Length = 658
Score = 139 bits (70), Expect = 4e-031
Identities = 154/182 (84%)
Strand = Plus / Plus
Query: 258 tgacgttcgacaacgcgggcatgtggagcgtgcattccaacatctgggagcggtactacc 317
|||||||||||||||||||||||||||| | | ||||||||||||||| || | ||||
Sbjct: 19 tgacgttcgacaacgcgggcatgtggagtatccggtccaacatctgggagaggaattacc 78
Query: 318 tcggggagcagttctacatcagcgtcgtctcgccggcgcgatcactgcgcgacgagtaca 377
|||| || ||| | |||||||||||| |||||||| ||| || || | ||||||||||
Sbjct: 79 tcggcgaacagctgtacatcagcgtcacctcgccggagcggtcgctcagggacgagtaca 138
Query: 378 acatgcccgacaacgccctccgctgcggcaaggtcgtggggctgccgctgccgccgtcct 437
||||||| || | | ||||||||||||||||||||| || ||||| |||||||||||||
Sbjct: 139 acatgccagagaccagcctccgctgcggcaaggtcgtcggcctgccactgccgccgtcct 198
Query: 438 ac 439
||
Sbjct: 199 ac 200
>gb|CF484935.1|CF484935 POL1_28_A11.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_28_A11_A002 5', mRNA sequence
Length = 565
Score = 131 bits (66), Expect = 9e-029
Identities = 72/74 (97%)
Strand = Plus / Plus
Query: 1 cgtgccccccgccgtgaacggtcccctccatgtcatccccaatgtcatcaccgccgagtt 60
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 492 cgtgccccccgccgtgaacggacccctccatgtcgtccccaatgtcatcaccgccgagtt 551
Query: 61 ccgcaccttcatcg 74
||||||||||||||
Sbjct: 552 ccgcaccttcatcg 565
>gb|CW347589.1|CW347589 fsbb001f007i24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f007i24, DNA
sequence
Length = 523
Score = 113 bits (57), Expect = 2e-023
Identities = 87/97 (89%)
Strand = Plus / Plus
Query: 52 cgccgagttccgcaccttcatcgagatcgtcttcgagaaccccgagaagagcatagactc 111
||||||||||||||||||||||||| | || ||||||||||||||||||||||| ||| |
Sbjct: 291 cgccgagttccgcaccttcatcgaggtggtgttcgagaaccccgagaagagcatcgacac 350
Query: 112 cctccacgtcgatggctacgccttcttcggcgtcggg 148
| ||||| |||| |||||||| ||||||| |||||||
Sbjct: 351 cttccacatcgacggctacgcattcttcgccgtcggg 387
>gb|BG464520.1|BG464520 EM1_70_G05.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 574
Score = 99.6 bits (50), Expect = 3e-019
Identities = 107/126 (84%)
Strand = Plus / Plus
Query: 314 tacctcggggagcagttctacatcagcgtcgtctcgccggcgcgatcactgcgcgacgag 373
|||||||| |||||| | |||||||||||| |||||||| ||| || || | ||||||
Sbjct: 2 tacctcggcgagcagctgtacatcagcgtcacctcgccggagcggtcgctcagggacgag 61
Query: 374 tacaacatgcccgacaacgccctccgctgcggcaaggtcgtggggctgccgctgccgccg 433
||||||||||| || | | ||||||||||||||||||||| || ||||| |||||||||
Sbjct: 62 tacaacatgccagagaccagcctccgctgcggcaaggtcgtcggcctgccactgccgccg 121
Query: 434 tcctac 439
||||||
Sbjct: 122 tcctac 127
>gb|CF484277.1|CF484277 POL1_4_F09.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_4_F09_A002 3', mRNA sequence
Length = 572
Score = 67.9 bits (34), Expect = 1e-009
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 394 cctccgctgcggcaaggtcgtggggctgccgctgccgccgtcctac 439
||||||||||||||||||||| || ||||| |||||||||||||||
Sbjct: 82 cctccgctgcggcaaggtcgtcggcctgccactgccgccgtcctac 127
>gb|CF485848.1|CF485848 POL1_34_C02.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_34_C02_A002 3', mRNA sequence
Length = 357
Score = 52.0 bits (26), Expect = 7e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 500 caaactcaaaagaacaaatacgaaagaagc 529
|||||||||||||||||| |||||||||||
Sbjct: 159 caaactcaaaagaacaaagacgaaagaagc 188
Score = 42.1 bits (21), Expect = 0.065
Identities = 28/29 (96%), Gaps = 1/29 (3%)
Strand = Plus / Plus
Query: 591 aaaaaatcat-gtaatgggagttatatat 618
|||||||||| ||||||||||||||||||
Sbjct: 318 aaaaaatcattgtaatgggagttatatat 346
Score = 40.1 bits (20), Expect = 0.26
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 421 gccgctgccgccgtcctacgcccccgcgcgctaagatgac 460
||||||||||||||| || || ||||||||||| |||||
Sbjct: 1 gccgctgccgccgtcttattccgccgcgcgctaaaatgac 40
>gb|CW478498.1|CW478498 fsbb001f236g18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f236g18, DNA
sequence
Length = 593
Score = 44.1 bits (22), Expect = 0.016
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 cgccgagttccgcaccttcatc 73
||||||||||||||||||||||
Sbjct: 572 cgccgagttccgcaccttcatc 593
>gb|CL175536.1|CL175536 104_381_10892511_148_31764_111 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10892511, DNA
sequence
Length = 529
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 418 gctgccgctgccgccgtcct 437
||||||||||||||||||||
Sbjct: 322 gctgccgctgccgccgtcct 341
>gb|CW186040.1|CW186040 104_603_11166358_116_36700_081 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11166358, DNA
sequence
Length = 539
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 418 gctgccgctgccgccgtcct 437
||||||||||||||||||||
Sbjct: 236 gctgccgctgccgccgtcct 217
>gb|CW191719.1|CW191719 104_613_11178646_116_36938_081 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11178646, DNA
sequence
Length = 718
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 418 gctgccgctgccgccgtcct 437
||||||||||||||||||||
Sbjct: 236 gctgccgctgccgccgtcct 217
>gb|CW232352.1|CW232352 104_685_11212773_116_37488_095 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11212773, DNA
sequence
Length = 528
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 418 gctgccgctgccgccgtcct 437
||||||||||||||||||||
Sbjct: 359 gctgccgctgccgccgtcct 378
>gb|CW232353.1|CW232353 104_685_11212773_148_37487_095 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11212773, DNA
sequence
Length = 628
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 418 gctgccgctgccgccgtcct 437
||||||||||||||||||||
Sbjct: 489 gctgccgctgccgccgtcct 470
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 218,664
Number of Sequences: 832831
Number of extensions: 218664
Number of successful extensions: 62311
Number of sequences better than 0.5: 23
Number of HSP's better than 0.5 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62266
Number of HSP's gapped (non-prelim): 39
length of query: 672
length of database: 491,359,669
effective HSP length: 19
effective length of query: 653
effective length of database: 475,535,880
effective search space: 310524929640
effective search space used: 310524929640
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)