BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115147.2.2
(1310 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW457591.1|CW457591 fsbb001f203h15k0 Sorghum methylation... 325 6e-087
gb|CW388940.1|CW388940 fsbb001f073o18f0 Sorghum methylation... 246 4e-063
gb|BZ348208.1|BZ348208 ho59e10.g1 WGS-SbicolorF (JM107 adap... 214 2e-053
gb|CW459431.1|CW459431 fsbb001f206c20k0 Sorghum methylation... 167 3e-039
gb|CW388941.1|CW388941 fsbb001f073o18k0 Sorghum methylation... 135 1e-029
gb|CW261457.1|CW261457 104_728_11229521_116_35174_069 Sorgh... 127 3e-027
gb|CW266910.1|CW266910 104_736_11232691_148_35285_066 Sorgh... 127 3e-027
gb|CW395604.1|CW395604 fsbb001f083l06f0 Sorghum methylation... 74 4e-011
gb|CW314277.1|CW314277 104_804_11471744_148_35799_018 Sorgh... 64 3e-008
gb|CW450142.1|CW450142 fsbb001f188k06f0 Sorghum methylation... 48 0.002
gb|BG049099.1|BG049099 OV1_23_C08.g1_A002 Ovary 1 (OV1) Sor... 48 0.002
gb|BG273207.1|BG273207 OV2_28_B10.g1_A002 Ovary 2 (OV2) Sor... 48 0.002
gb|CW387001.1|CW387001 fsbb001f071c16f0 Sorghum methylation... 44 0.032
gb|CN124984.1|CN124984 RHOH1_8_D12.b1_A002 Acid- and alkali... 44 0.032
gb|CL152301.1|CL152301 104_335_10779870_114_31363_270 Sorgh... 42 0.13
gb|CW030007.1|CW030007 104_257_10500000_116_30402 Sorghum m... 42 0.13
gb|CW229746.1|CW229746 104_671_11207476_116_37268_012 Sorgh... 42 0.13
gb|CW263357.1|CW263357 104_731_11230643_148_35217_040 Sorgh... 42 0.13
gb|CW458188.1|CW458188 fsbb001f204f20f0 Sorghum methylation... 42 0.13
gb|CW499962.1|CW499962 fsbb001f294p23k0 Sorghum methylation... 42 0.13
gb|CD233140.1|CD233140 SS1_12_A05.b1_A012 Salt-stressed see... 42 0.13
gb|CN126747.1|CN126747 RHOH1_19_A03.b1_A002 Acid- and alkal... 42 0.13
>gb|CW457591.1|CW457591 fsbb001f203h15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f203h15, DNA
sequence
Length = 599
Score = 325 bits (164), Expect = 6e-087
Identities = 349/410 (85%), Gaps = 3/410 (0%)
Strand = Plus / Minus
Query: 49 ctcctcctcctcgccctggcgtccgcgctccttggtgcggcgccggccgccgc---gaac 105
|||||||||||| | | | |||||||||||||| ||||||||||||||||| |||
Sbjct: 538 ctcctcctcctcctcgtcgtgtccgcgctccttgcggcggcgccggccgccgccaacaac 479
Query: 106 gcgcccggcggggcgttcagcaactgggtggcgatgaaccagcagagctacgcgctgtac 165
||||| ||||||||||||||||||||| | | | |||||||||||||||||||||||||
Sbjct: 478 gcgcctggcggggcgttcagcaactggatcgtgcagaaccagcagagctacgcgctgtac 419
Query: 166 gcgcagaagtccgtcggggacgggggcaaggagcccctggacaagaagctgtcggaggcg 225
||||||||||||| ||| |||||||||||||||||| ||||||||| ||| |||||||
Sbjct: 418 gcgcagaagtccgccggcgacgggggcaaggagcccatggacaagagcctgcaggaggcg 359
Query: 226 gagaagaagaaggtcacgtacgtggtggaccccagcggcaagggcgactacaccaacatc 285
||| ||||||||| ||||||||| | |||||||||||||| ||||||||| ||||||||
Sbjct: 358 gaggcgaagaaggtgacgtacgtgatcgaccccagcggcaacggcgactaccccaacatc 299
Query: 286 accgcggcgctggaggatatcccggtgagcaacaccaagcgcgtgatcctggatctcaag 345
|| ||||||||||| | ||||||| ||||||||| ||| ||||||||||| || |||
Sbjct: 298 acggcggcgctggacgcgatcccggagagcaacactcggcgggtgatcctggacctgaag 239
Query: 346 cccggcgctcagttccgcgagaagctgttcctgaacatcagcaagccgttcatcacgttc 405
|||||||| |||||| |||||||||||| | |||||||||||||||||| | ||||||
Sbjct: 238 cccggcgcggtgttccgggagaagctgttcgtcaacatcagcaagccgttcgtgacgttc 179
Query: 406 cggtcggaccccaagaagcccgccgtcgtggtctggaacgacactgcggc 455
||||||||| ||| || ||| ||| |||||||||||||| |||||
Sbjct: 178 aagtcggacccggcgaacccggccaccgtcgtctggaacgacacggcggc 129
Score = 129 bits (65), Expect = 7e-028
Identities = 80/85 (94%)
Strand = Plus / Minus
Query: 475 aagccggtgggcacggtggggagcgccacgctggcggtggagtcggactacttcacggcg 534
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 97 aagcccgtgggcacggtggggagcgcgacgctggcggtggagtcggactacttcacggcg 38
Query: 535 tacggcgtggtgttccggaacgacg 559
|||||||||||| || ||||||||
Sbjct: 37 tacggcgtggtgctcaagaacgacg 13
>gb|CW388940.1|CW388940 fsbb001f073o18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f073o18, DNA
sequence
Length = 669
Score = 246 bits (124), Expect = 4e-063
Identities = 222/254 (87%), Gaps = 3/254 (1%)
Strand = Plus / Minus
Query: 49 ctcctcctcctcgccctggcgtccgcgctccttggtgcggcgccggccgccgc---gaac 105
|||||||||||| | | | |||||||||||||| ||||||||||||||||| |||
Sbjct: 270 ctcctcctcctcctcgtcgtgtccgcgctccttgcggcggcgccggccgccgccaacaac 211
Query: 106 gcgcccggcggggcgttcagcaactgggtggcgatgaaccagcagagctacgcgctgtac 165
||||| ||||||||||||||||||||| | | | |||||||||||||||||||||||||
Sbjct: 210 gcgcctggcggggcgttcagcaactggatcgtgcagaaccagcagagctacgcgctgtac 151
Query: 166 gcgcagaagtccgtcggggacgggggcaaggagcccctggacaagaagctgtcggaggcg 225
||||||||||||| ||| |||||||||||||||||| ||||||||| ||| |||||||
Sbjct: 150 gcgcagaagtccgccggcgacgggggcaaggagcccatggacaagagcctgcaggaggcg 91
Query: 226 gagaagaagaaggtcacgtacgtggtggaccccagcggcaagggcgactacaccaacatc 285
||| ||||||||| ||||||||| | |||||||||||||| ||||||||| ||||||||
Sbjct: 90 gaggcgaagaaggtgacgtacgtgatcgaccccagcggcaacggcgactaccccaacatc 31
Query: 286 accgcggcgctgga 299
|| |||||||||||
Sbjct: 30 acggcggcgctgga 17
>gb|BZ348208.1|BZ348208 ho59e10.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ho59e10 5', DNA sequence
Length = 149
Score = 214 bits (108), Expect = 2e-053
Identities = 135/144 (93%)
Strand = Plus / Plus
Query: 821 agtccatcgagggcgccatcgacaccggcttctcgttcaagaactgcagcatcggcggcg 880
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 5 agtccatcgagggcgccattgacaccggcttctccttcaagaactgcagcatcggcggcg 64
Query: 881 tcaagggcggacagatctacctgggccgcgcctggggggactcctcccgggtggtctact 940
||||||||||||||||||||||||| ||||| ||||||||||| || ||||||||||||
Sbjct: 65 tcaagggcggacagatctacctgggacgcgcgtggggggactcgtcgcgggtggtctacg 124
Query: 941 cgtacacgaagatgggggaggagg 964
| |||||| |||||||||||||||
Sbjct: 125 cctacacggagatgggggaggagg 148
>gb|CW459431.1|CW459431 fsbb001f206c20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f206c20, DNA
sequence
Length = 272
Score = 167 bits (84), Expect = 3e-039
Identities = 146/166 (87%), Gaps = 3/166 (1%)
Strand = Plus / Minus
Query: 49 ctcctcctcctcgccctggcgtccgcgctccttggtgcggcgccggccgccgc---gaac 105
|||||||||||| | | | |||||||||||||| ||||||||||||||||| |||
Sbjct: 177 ctcctcctcctcctcgtcgtgtccgcgctccttgcggcggcgccggccgccgccaacaac 118
Query: 106 gcgcccggcggggcgttcagcaactgggtggcgatgaaccagcagagctacgcgctgtac 165
||||| ||||||||||||||||||||| | | | |||||||||||||||||||||||||
Sbjct: 117 gcgcctggcggggcgttcagcaactggatcgtgcagaaccagcagagctacgcgctgtac 58
Query: 166 gcgcagaagtccgtcggggacgggggcaaggagcccctggacaaga 211
||||||||||||| ||| |||||||||||||||||| |||||||||
Sbjct: 57 gcgcagaagtccgccggcgacgggggcaaggagcccatggacaaga 12
>gb|CW388941.1|CW388941 fsbb001f073o18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f073o18, DNA
sequence
Length = 719
Score = 135 bits (68), Expect = 1e-029
Identities = 127/146 (86%), Gaps = 3/146 (2%)
Strand = Plus / Plus
Query: 49 ctcctcctcctcgccctggcgtccgcgctccttggtgcggcgccggccgccgc---gaac 105
|||||||||||| | | | |||||||||||||| ||||||||||||||||| |||
Sbjct: 574 ctcctcctcctcctcgtcgtgtccgcgctccttgcggcggcgccggccgccgccaacaac 633
Query: 106 gcgcccggcggggcgttcagcaactgggtggcgatgaaccagcagagctacgcgctgtac 165
||||| ||||||||||||||||||||| | | | |||||||||||||||||||||||||
Sbjct: 634 gcgcctggcggggcgttcagcaactggatcgtgcagaaccagcagagctacgcgctgtac 693
Query: 166 gcgcagaagtccgtcggggacggggg 191
||||||||||||| ||| ||||||||
Sbjct: 694 gcgcagaagtccgccggcgacggggg 719
>gb|CW261457.1|CW261457 104_728_11229521_116_35174_069 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11229521, DNA
sequence
Length = 571
Score = 127 bits (64), Expect = 3e-027
Identities = 136/160 (85%)
Strand = Plus / Minus
Query: 584 agggcggccaggcggtggcggtgcggctgttcgggaccaagacgcagatctacaactgca 643
||||||| |||||||||||||||||| ||| ||||| |||| || | ||||| ||||||
Sbjct: 223 agggcgggcaggcggtggcggtgcgggtgtacgggaacaaggcggcgttctacgactgca 164
Query: 644 ccatcgacggcggacaggacacgctgtacgaccacaagggcctgcactacttcaagggct 703
|| |||||||||| ||||||||||||||||||||| ||| | |||||||||||| |
Sbjct: 163 ccttcgacggcggtcaggacacgctgtacgaccaccgtggcttacactacttcaagtcgt 104
Query: 704 gcctcatccggggcagcgtcgacttcatcttcggcttcgg 743
||| ||||| ||||| || ||||||||||||||||||||
Sbjct: 103 gccacatccagggcacggtggacttcatcttcggcttcgg 64
Score = 65.9 bits (33), Expect = 9e-009
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 463 ggcaaggacggtaagccggtgggcacggtggggagcgccacgctggcggtggagtcggac 522
||||||||||| ||||| |||||||| || ||||| ||| |||||||||||||||||
Sbjct: 344 ggcaaggacgggaagcccgtgggcacctacggcagcgcgacggtggcggtggagtcggac 285
Query: 523 tacttcacggcgt 535
||||||| |||||
Sbjct: 284 tacttcatggcgt 272
>gb|CW266910.1|CW266910 104_736_11232691_148_35285_066 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11232691, DNA
sequence
Length = 620
Score = 127 bits (64), Expect = 3e-027
Identities = 190/232 (81%)
Strand = Plus / Minus
Query: 584 agggcggccaggcggtggcggtgcggctgttcgggaccaagacgcagatctacaactgca 643
||||||| |||||||||||||||||| ||| ||||| |||| || | ||||| ||||||
Sbjct: 569 agggcgggcaggcggtggcggtgcgggtgtacgggaacaaggcggcgttctacgactgca 510
Query: 644 ccatcgacggcggacaggacacgctgtacgaccacaagggcctgcactacttcaagggct 703
|| |||||||||| ||||||||||||||||||||| ||| | |||||||||||| |
Sbjct: 509 ccttcgacggcggtcaggacacgctgtacgaccaccgtggcttacactacttcaagtcgt 450
Query: 704 gcctcatccggggcagcgtcgacttcatcttcggcttcggccgcagcttctacgaggact 763
||| ||||| ||||| || |||||||||||||||||||| | | ||||||||||
Sbjct: 449 gccacatccagggcacggtggacttcatcttcggcttcgggaggtcgctgtacgaggact 390
Query: 764 gccgcatcgagtcggtggtcaaggaggtggcggtgctgacggcgcagcagcg 815
|| |||| ||||||| |||||| |||||| | ||||||||||||||||
Sbjct: 389 gcgccatcacgtcggtgaccaaggacgtggcgatcgtgacggcgcagcagcg 338
Score = 71.9 bits (36), Expect = 1e-010
Identities = 132/164 (80%)
Strand = Plus / Minus
Query: 892 cagatctacctgggccgcgcctggggggactcctcccgggtggtctactcgtacacgaag 951
||||||||||| ||| | || ||||||||||| || ||||||| ||| ||||||| |
Sbjct: 258 cagatctacctcggcagagcgtggggggactcgtcgagggtggtgtacgcgtacaccacc 199
Query: 952 atgggggaggaggtggtccccgtgggttgggacggctggcagatcgccaagccggagagc 1011
|||||| |||||||||| ||||| || |||||| ||| | | ||||||||| |
Sbjct: 198 atggggaaggaggtggtgcccgtcggctgggacaagtggacggtgcagaagccggagcac 139
Query: 1012 agcggcatctactacggcgagttcaagtgctttggccccggcgc 1055
|||||||||||||||||||||| | |||||| |||||||||||
Sbjct: 138 agcggcatctactacggcgagtaccagtgctccggccccggcgc 95
Score = 44.1 bits (22), Expect = 0.032
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 1096 ctcaccgaggcgcaggccaagccattcgtcggca 1129
|||| ||| |||||||||||||||||| ||||||
Sbjct: 60 ctcaacgacgcgcaggccaagccattcatcggca 27
>gb|CW395604.1|CW395604 fsbb001f083l06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f083l06, DNA
sequence
Length = 689
Score = 73.8 bits (37), Expect = 4e-011
Identities = 75/87 (86%), Gaps = 3/87 (3%)
Strand = Plus / Minus
Query: 49 ctcctcctcctcgccctggcgtccgcgctccttggtgcggcgccggccgccgc---gaac 105
|||||||||||| | | | |||||||||||||| ||||||||||||||||| |||
Sbjct: 101 ctcctcctcctcctcgtcgtgtccgcgctccttgcggcggcgccggccgccgccaacaac 42
Query: 106 gcgcccggcggggcgttcagcaactgg 132
||||| |||||||||||||||||||||
Sbjct: 41 gcgcctggcggggcgttcagcaactgg 15
>gb|CW314277.1|CW314277 104_804_11471744_148_35799_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11471744, DNA
sequence
Length = 749
Score = 63.9 bits (32), Expect = 3e-008
Identities = 74/88 (84%)
Strand = Plus / Minus
Query: 658 caggacacgctgtacgaccacaagggcctgcactacttcaagggctgcctcatccggggc 717
||||||||||||| |||| || |||| | |||||||||| ||||||| ||||||||
Sbjct: 90 caggacacgctgtgcgactaccagggacggcactacttccgcggctgccaggtccggggc 31
Query: 718 agcgtcgacttcatcttcggcttcggcc 745
|||||||||| |||||||||||||||
Sbjct: 30 gccgtcgacttcgtcttcggcttcggcc 3
>gb|CW450142.1|CW450142 fsbb001f188k06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f188k06, DNA
sequence
Length = 688
Score = 48.1 bits (24), Expect = 0.002
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 710 tccggggcagcgtcgacttcatcttcggcttcggccgcagcttctacgaggactgc 765
|||||||| |||||||||| ||||||||||||||| | ||||||||||||||
Sbjct: 665 tccggggcgccgtcgacttcgtcttcggcttcggccagtccatctacgaggactgc 610
Score = 46.1 bits (23), Expect = 0.008
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 687 gcactacttcaagggctgcctcatccggggcagcgtcgacttcatcttcggcttcggcc 745
|||||||||| ||||||| |||||||| |||||||||| |||||||||||||||
Sbjct: 688 gcactacttccgcggctgccaggtccggggcgccgtcgacttcgtcttcggcttcggcc 630
>gb|BG049099.1|BG049099 OV1_23_C08.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 500
Score = 48.1 bits (24), Expect = 0.002
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 710 tccggggcagcgtcgacttcatcttcggcttcggccgcagcttctacgaggactgc 765
|||||||| |||||||||| ||||||||||||||| | ||||||||||||||
Sbjct: 6 tccggggcgccgtcgacttcgtcttcggcttcggccagtccatctacgaggactgc 61
>gb|BG273207.1|BG273207 OV2_28_B10.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 577
Score = 48.1 bits (24), Expect = 0.002
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 710 tccggggcagcgtcgacttcatcttcggcttcggccgcagcttctacgaggactgc 765
|||||||| |||||||||| ||||||||||||||| | ||||||||||||||
Sbjct: 8 tccggggcgccgtcgacttcgtcttcggcttcggccagtccatctacgaggactgc 63
>gb|CW387001.1|CW387001 fsbb001f071c16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f071c16, DNA
sequence
Length = 689
Score = 44.1 bits (22), Expect = 0.032
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 896 tctacctgggccgcgcctgggg 917
||||||||||||||||||||||
Sbjct: 202 tctacctgggccgcgcctgggg 181
>gb|CN124984.1|CN124984 RHOH1_8_D12.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_8_D12_A002 3', mRNA sequence
Length = 779
Score = 44.1 bits (22), Expect = 0.032
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 896 tctacctgggccgcgcctgggg 917
||||||||||||||||||||||
Sbjct: 425 tctacctgggccgcgcctgggg 446
>gb|CL152301.1|CL152301 104_335_10779870_114_31363_270 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10779870, DNA
sequence
Length = 555
Score = 42.1 bits (21), Expect = 0.13
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1105 gcgcaggccaagccattcgtcggca 1129
|||||||||||||||||| ||||||
Sbjct: 555 gcgcaggccaagccattcatcggca 531
>gb|CW030007.1|CW030007 104_257_10500000_116_30402 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10500000, DNA
sequence
Length = 763
Score = 42.1 bits (21), Expect = 0.13
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 48 cctcctcctcctcgccctggcgtccgcgc 76
||||||||||||| ||||||||||||||
Sbjct: 448 cctcctcctcctcctcctggcgtccgcgc 476
>gb|CW229746.1|CW229746 104_671_11207476_116_37268_012 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11207476, DNA
sequence
Length = 628
Score = 42.1 bits (21), Expect = 0.13
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 48 cctcctcctcctcgccctggcgtccgcgc 76
||||||||||||| ||||||||||||||
Sbjct: 338 cctcctcctcctcctcctggcgtccgcgc 366
>gb|CW263357.1|CW263357 104_731_11230643_148_35217_040 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11230643, DNA
sequence
Length = 676
Score = 42.1 bits (21), Expect = 0.13
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 48 cctcctcctcctcgccctggcgtccgcgc 76
||||||||||||| ||||||||||||||
Sbjct: 502 cctcctcctcctcctcctggcgtccgcgc 530
>gb|CW458188.1|CW458188 fsbb001f204f20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f204f20, DNA
sequence
Length = 558
Score = 42.1 bits (21), Expect = 0.13
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 658 caggacacgctgtacgaccac 678
|||||||||||||||||||||
Sbjct: 488 caggacacgctgtacgaccac 468
>gb|CW499962.1|CW499962 fsbb001f294p23k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f294p23, DNA
sequence
Length = 389
Score = 42.1 bits (21), Expect = 0.13
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 658 caggacacgctgtacgaccac 678
|||||||||||||||||||||
Sbjct: 280 caggacacgctgtacgaccac 260
>gb|CD233140.1|CD233140 SS1_12_A05.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_12_A05_A012 3', mRNA sequence
Length = 643
Score = 42.1 bits (21), Expect = 0.13
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 658 caggacacgctgtacgaccac 678
|||||||||||||||||||||
Sbjct: 91 caggacacgctgtacgaccac 111
>gb|CN126747.1|CN126747 RHOH1_19_A03.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_19_A03_A002 3', mRNA sequence
Length = 786
Score = 42.1 bits (21), Expect = 0.13
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 658 caggacacgctgtacgaccac 678
|||||||||||||||||||||
Sbjct: 238 caggacacgctgtacgaccac 258
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 533,356
Number of Sequences: 832831
Number of extensions: 533356
Number of successful extensions: 180951
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 180873
Number of HSP's gapped (non-prelim): 61
length of query: 1310
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1290
effective length of database: 474,703,049
effective search space: 612366933210
effective search space used: 612366933210
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)