BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115139.2.1
(1079 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG946962.1|BG946962 IP1_1_H02.b1_A002 Immature pannicle ... 569 e-160
gb|BG947892.1|BG947892 IP1_6_F06.b1_A002 Immature pannicle ... 527 e-148
gb|BZ331520.1|BZ331520 hw10a10.g1 WGS-SbicolorF (JM107 adap... 446 e-123
gb|CL160198.1|CL160198 104_350_10804807_114_31822_247 Sorgh... 446 e-123
gb|CW072227.1|CW072227 104_325_10592141_114_30537 Sorghum m... 446 e-123
gb|CW146117.1|CW146117 104_538_11138820_116_34979_034 Sorgh... 446 e-123
gb|CW446801.1|CW446801 fsbb001f179k03f0 Sorghum methylation... 446 e-123
gb|CW464925.1|CW464925 fsbb001f215g22f0 Sorghum methylation... 438 e-121
gb|BI141675.1|BI141675 IP1_55_E06.b1_A002 Immature pannicle... 436 e-120
gb|CW128866.1|CW128866 104_510_11114251_116_34758_070 Sorgh... 422 e-116
gb|BG946880.1|BG946880 IP1_1_H02.g1_A002 Immature pannicle ... 357 1e-096
gb|CW117055.1|CW117055 104_493_11107455_148_34610_064 Sorgh... 281 7e-074
gb|CW055083.1|CW055083 104_296_10516884_115_30175 Sorghum m... 260 2e-067
gb|BI141403.1|BI141403 IP1_55_E06.g1_A002 Immature pannicle... 244 1e-062
gb|CL160199.1|CL160199 104_350_10804807_116_31823_247 Sorgh... 230 2e-058
gb|CL154458.1|CL154458 104_339_10781423_114_31371_287 Sorgh... 224 1e-056
gb|CW055082.1|CW055082 104_296_10516884_114_30174 Sorghum m... 224 1e-056
gb|CW446802.1|CW446802 fsbb001f179k03k0 Sorghum methylation... 224 1e-056
gb|CW501374.1|CW501374 fsbb001f297c11k0 Sorghum methylation... 224 1e-056
gb|BZ331519.1|BZ331519 hw10a10.b1 WGS-SbicolorF (JM107 adap... 214 1e-053
gb|CL154459.1|CL154459 104_339_10781423_116_31372_287 Sorgh... 190 2e-046
gb|CW146118.1|CW146118 104_538_11138820_148_34983_034 Sorgh... 186 3e-045
gb|CW464926.1|CW464926 fsbb001f215g22k0 Sorghum methylation... 186 3e-045
gb|CW498402.1|CW498402 fsbb001f291j19k0 Sorghum methylation... 186 3e-045
gb|CW117054.1|CW117054 104_493_11107455_116_34614_064 Sorgh... 178 7e-043
gb|BI141055.1|BI141055 IP1_42_E11.b1_A002 Immature pannicle... 58 2e-006
gb|BI211450.1|BI211450 IP1_60_H10.b1_A002 Immature pannicle... 58 2e-006
gb|BI351580.1|BI351580 IP1_72_F10.b1_A002 Immature pannicle... 58 2e-006
emb|AX512962.1| Sequence 7 from Patent WO02063021 58 2e-006
gb|BG947600.1|BG947600 IP1_6_F06.g1_A002 Immature pannicle ... 52 1e-004
gb|CW287590.1|CW287590 104_765_11411495_116_35521_084 Sorgh... 44 0.027
gb|CW400223.1|CW400223 fsbb001f090g22f0 Sorghum methylation... 44 0.027
gb|AW922257.1|AW922257 DG1_17_G01.b1_A002 Dark Grown 1 (DG1... 44 0.027
gb|BE125424.1|BE125424 DG1_25_G01.b1_A002 Dark Grown 1 (DG1... 44 0.027
gb|CF429087.1|CF429087 PH1_19_G12.g1_A002 Phosphorous-defic... 44 0.027
gb|CF432928.1|CF432928 NIT1_19_B11.g1_A002 Nitrogen-deficie... 44 0.027
gb|CW093956.1|CW093956 104_457_11000061_148_37478_091 Sorgh... 42 0.11
gb|CW098263.1|CW098263 104_464_11002911_148_34364_052 Sorgh... 42 0.11
gb|CW202059.1|CW202059 104_628_11184893_116_37086_029 Sorgh... 42 0.11
gb|CW202060.1|CW202060 104_628_11184893_148_37085_029 Sorgh... 42 0.11
gb|CW217859.1|CW217859 104_651_11195875_148_37457_076 Sorgh... 42 0.11
gb|CW266537.1|CW266537 104_736_11232481_116_35281_009 Sorgh... 42 0.11
gb|CW340854.1|CW340854 104_842_11486016_116_36172_096 Sorgh... 42 0.11
gb|CW340855.1|CW340855 104_842_11486016_148_36171_096 Sorgh... 42 0.11
gb|CW466289.1|CW466289 fsbb001f217h13f0 Sorghum methylation... 42 0.11
gb|CW486984.1|CW486984 fsbb001f252j04f0 Sorghum methylation... 42 0.11
gb|CW491338.1|CW491338 fsbb001f281c16k0 Sorghum methylation... 42 0.11
gb|AW671852.1|AW671852 LG1_352_C05.b1_A002 Light Grown 1 (L... 42 0.11
gb|BE360688.1|BE360688 DG1_66_C04.b2_A002 Dark Grown 1 (DG1... 42 0.11
gb|CD231600.1|CD231600 SS1_22_F09.g1_A012 Salt-stressed see... 42 0.11
gb|CD461540.1|CD461540 SA1_32_D01.g2_A002 Salicylic acid-tr... 42 0.11
gb|CN129279.1|CN129279 RHOH1_34_B10.g1_A002 Acid- and alkal... 42 0.11
gb|CN137521.1|CN137521 OX1_57_G07.g1_A002 Oxidatively-stres... 42 0.11
gb|CN137640.1|CN137640 OX1_58_D03.g1_A002 Oxidatively-stres... 42 0.11
gb|CN138545.1|CN138545 OX1_64_A03.g1_A002 Oxidatively-stres... 42 0.11
gb|CX608316.1|CX608316 ANR1_37_H09.g1_A002 Anaerobic roots ... 42 0.11
gb|CX610621.1|CX610621 ANR1_19_G06.g1_A002 Anaerobic roots ... 42 0.11
gb|BZ338010.1|BZ338010 ia92d08.b1 WGS-SbicolorF (JM107 adap... 40 0.41
gb|CW067047.1|CW067047 104_314_10524032_114_30123 Sorghum m... 40 0.41
gb|CW205329.1|CW205329 104_633_11187011_116_36929_038 Sorgh... 40 0.41
gb|CW205330.1|CW205330 104_633_11187011_148_36930_038 Sorgh... 40 0.41
gb|CW214121.1|CW214121 104_646_11193848_148_37053_032 Sorgh... 40 0.41
gb|CW307336.1|CW307336 104_795_11468086_116_36059_089 Sorgh... 40 0.41
gb|CW307337.1|CW307337 104_795_11468086_148_36060_089 Sorgh... 40 0.41
gb|CW307965.1|CW307965 104_796_11468420_116_35731_076 Sorgh... 40 0.41
gb|CW326229.1|CW326229 104_821_11478109_116_36062_055 Sorgh... 40 0.41
gb|CW326230.1|CW326230 104_821_11478109_148_36063_055 Sorgh... 40 0.41
gb|CW344753.1|CW344753 104_847_11488123_116_36201_072 Sorgh... 40 0.41
gb|CW352653.1|CW352653 fsbb001f015a15f0 Sorghum methylation... 40 0.41
gb|CW392942.1|CW392942 fsbb001f079m16f0 Sorghum methylation... 40 0.41
gb|CW394909.1|CW394909 fsbb001f082l15k0 Sorghum methylation... 40 0.41
gb|CW417798.1|CW417798 fsbb001f120p16k0 Sorghum methylation... 40 0.41
gb|CW421567.1|CW421567 fsbb001f130h05k0 Sorghum methylation... 40 0.41
gb|CW445808.1|CW445808 fsbb001f171c17f0 Sorghum methylation... 40 0.41
gb|CW453694.1|CW453694 fsbb001f197m22f0 Sorghum methylation... 40 0.41
gb|CW458492.1|CW458492 fsbb001f204m20f0 Sorghum methylation... 40 0.41
gb|CW458493.1|CW458493 fsbb001f204m20k0 Sorghum methylation... 40 0.41
gb|CW477732.1|CW477732 fsbb001f235d13k0 Sorghum methylation... 40 0.41
gb|CW492509.1|CW492509 fsbb001f282n03f0 Sorghum methylation... 40 0.41
gb|BG157972.1|BG157972 OV1_15_D02.b1_A002 Ovary 1 (OV1) Sor... 40 0.41
gb|BM317616.1|BM317616 LG1_260_C01.b9_A002 Light Grown 1 (L... 40 0.41
gb|CD206723.1|CD206723 HS1_24_D05.g1_A012 Heat-shocked seed... 40 0.41
gb|CD220075.1|CD220075 CCC1_60_G02.g1_A007 Callus culture/c... 40 0.41
gb|CF074452.1|CF074452 FE1_24_H03.g1_A002 Iron-deficient se... 40 0.41
gb|U87453.1|SBU87453 Sorghum bicolor dihydroflavonol-4-redu... 40 0.41
gb|U87454.1|SBU87454 Sorghum bicolor dihydroflavonol-4-redu... 40 0.41
gb|AF010283.1| Sorghum bicolor ADP-glucose pyrophosphorylas... 40 0.41
>gb|BG946962.1|BG946962 IP1_1_H02.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 485
Score = 569 bits (287), Expect = e-160
Identities = 425/471 (90%)
Strand = Plus / Plus
Query: 3 ggctaacactgctaagggtaaggtctgtgtcactggggcgtctggtttcatcgcctcctg 62
||||| ||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 14 ggctagcactggtaagggtaaagtctgtgtcactggggcatctggtttcatcgcctcctg 73
Query: 63 gctcgtcaagcggcttcttgagtctgggtaccatgtcctgggaacagtcagagacccagg 122
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 74 gctcatcaagcggcttcttgagtctgggtaccatgtcctcggaacagtcagagacccagg 133
Query: 123 gaatggcaagaaagtagggcacctctggggcctggaaggcgcaaaggaaaggctgcagct 182
|||| |||||||||||| |||||||||| |||||||||||||||| |||||||||||
Sbjct: 134 gaatcacaagaaagtaggacacctctgggttttggaaggcgcaaaggagaggctgcagct 193
Query: 183 cgtgagagctgatctcttggaggaagggagcttcgacgacgctgtgatggcttgcgaggg 242
||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 194 tgtgagagctgacctcttggaggaagggagctttgacgacgctgtgatggcttgtgaggg 253
Query: 243 cgtcttccacaccgcatcgcccgtcgtcaccggatctaattccaaggaggagatgcttga 302
|||||||||||| ||||| || ||| |||| |||| ||||||||||||| |||||| |
Sbjct: 254 cgtcttccacactgcatctcctgtcatcactaaatctgattccaaggaggaaatgcttaa 313
Query: 303 ttcagcaataaacggcacgatgaacgtgctacgctcgtgcaagaagaacccatcgctcaa 362
|||||||||||||||||| ||||||| ||||| || ||||||||||| ||||| ||||
Sbjct: 314 ttcagcaataaacggcactctgaacgttctacgttcatgcaagaagaatccatccctcag 373
Query: 363 gagggttgtcctgacatcctcgtcgtcgacagtgaggatcaaggacgaagccgacctgcc 422
||||||||||||||| || |||||| |||| |||||||||||||||||||||||||||||
Sbjct: 374 gagggttgtcctgacgtcttcgtcggcgaccgtgaggatcaaggacgaagccgacctgcc 433
Query: 423 ccctaacgtgctgctggacgaatcgtcgtggagctccatcgagttctgcga 473
|||||||||| ||||||| ||| | || ||||||||||| |||| ||||||
Sbjct: 434 ccctaacgtgttgctggatgaaacatcatggagctccattgagtactgcga 484
>gb|BG947892.1|BG947892 IP1_6_F06.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 454
Score = 527 bits (266), Expect = e-148
Identities = 398/442 (90%)
Strand = Plus / Plus
Query: 68 tcaagcggcttcttgagtctgggtaccatgtcctgggaacagtcagagacccagggaatg 127
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 10 tcaagcggcttcttgagtctgggtaccatgtcctcggaacagtcagagacccagggaatc 69
Query: 128 gcaagaaagtagggcacctctggggcctggaaggcgcaaaggaaaggctgcagctcgtga 187
|||||||||||| |||||||||| |||||||||||||||| ||||||||||| ||||
Sbjct: 70 acaagaaagtaggacacctctgggttttggaaggcgcaaaggagaggctgcagcttgtga 129
Query: 188 gagctgatctcttggaggaagggagcttcgacgacgctgtgatggcttgcgagggcgtct 247
||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 130 gagctgacctcttggaggaagggagctttgacgacgctgtgatggcttgtgagggcgtct 189
Query: 248 tccacaccgcatcgcccgtcgtcaccggatctaattccaaggaggagatgcttgattcag 307
||||||| ||||| || ||| |||| |||| ||||||||||||| |||||| ||||||
Sbjct: 190 tccacactgcatctcctgtcatcactaaatctgattccaaggaggaaatgcttaattcag 249
Query: 308 caataaacggcacgatgaacgtgctacgctcgtgcaagaagaacccatcgctcaagaggg 367
||||||||||||| ||||||| ||||| || ||||||||||| ||||| |||| |||||
Sbjct: 250 caataaacggcactctgaacgttctacgttcatgcaagaagaatccatccctcaggaggg 309
Query: 368 ttgtcctgacatcctcgtcgtcgacagtgaggatcaaggacgaagccgacctgcccccta 427
|||||||||| || |||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 310 ttgtcctgacgtcttcgtcggcgaccgtgaggatcaaggacgaagccgacctgcccccta 369
Query: 428 acgtgctgctggacgaatcgtcgtggagctccatcgagttctgcgaaagtctccagatat 487
||||| ||||||| ||| | || ||||||||||| |||| |||||| |||||||||||||
Sbjct: 370 acgtgttgctggatgaaacatcatggagctccattgagtactgcgagagtctccagatat 429
Query: 488 ggtacgccgtcgcaaagatcct 509
|||| ||||| |||||||||||
Sbjct: 430 ggtatgccgttgcaaagatcct 451
>gb|BZ331520.1|BZ331520 hw10a10.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hw10a10 5', DNA sequence
Length = 635
Score = 446 bits (225), Expect = e-123
Identities = 315/345 (91%)
Strand = Plus / Minus
Query: 645 aggagagacggggaagttcacgacgtacgggaggatggggtacgtccacatcgacgacgt 704
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 532 aggagagacggttaagttcacggtgtacgggaggatggggtacgtccacatcgacgacgt 473
Query: 705 ggcgaggtgccacatgctggcgtacgaggccgcgggcgcccgagggaggtacatctgcag 764
||||||||||||||| |||||||||||| |||| ||||||| ||||||||||||||||
Sbjct: 472 ggcgaggtgccacatcctggcgtacgagtccgccggcgcccacgggaggtacatctgcaa 413
Query: 765 cgcggcggtgctggactgcggcgacctcgccgccctgctcgcgcggcggttcccagcgta 824
||||||||||||| |||||| ||||||| |||||||||||||||||||||||| |||||
Sbjct: 412 cgcggcggtgctgtgctgcggtgacctcgtcgccctgctcgcgcggcggttcccggcgta 353
Query: 825 ccccgtcccgaggagcctgccccgcgcctacggcgagcagtcgtacggcttcgacacgtc 884
|| ||||||||||||||||| ||| |||||||||||| |||||||||||||||||||
Sbjct: 352 tccgatcccgaggagcctgcccagcgtgtacggcgagcagacgtacggcttcgacacgtc 293
Query: 885 caaggcccgcgcgctggggctggcggaattcaagggcgtcgaggagatgttcgacgacgc 944
|||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 292 caaggcccgcgcattggggctggtggacctcaagggcgtcgaggagatgttcgacgacgc 233
Query: 945 cgtcgcctcgttcataggccatggccatctccccgccgccgagga 989
||||| |||| ||| ||||||||||||||||||||||||||||||
Sbjct: 232 cgtcgactcgctcagaggccatggccatctccccgccgccgagga 188
>gb|CL160198.1|CL160198 104_350_10804807_114_31822_247 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10804807, DNA
sequence
Length = 588
Score = 446 bits (225), Expect = e-123
Identities = 315/345 (91%)
Strand = Plus / Minus
Query: 645 aggagagacggggaagttcacgacgtacgggaggatggggtacgtccacatcgacgacgt 704
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 369 aggagagacggttaagttcacggtgtacgggaggatggggtacgtccacatcgacgacgt 310
Query: 705 ggcgaggtgccacatgctggcgtacgaggccgcgggcgcccgagggaggtacatctgcag 764
||||||||||||||| |||||||||||| |||| ||||||| ||||||||||||||||
Sbjct: 309 ggcgaggtgccacatcctggcgtacgagtccgccggcgcccacgggaggtacatctgcaa 250
Query: 765 cgcggcggtgctggactgcggcgacctcgccgccctgctcgcgcggcggttcccagcgta 824
||||||||||||| |||||| ||||||| |||||||||||||||||||||||| |||||
Sbjct: 249 cgcggcggtgctgtgctgcggtgacctcgtcgccctgctcgcgcggcggttcccggcgta 190
Query: 825 ccccgtcccgaggagcctgccccgcgcctacggcgagcagtcgtacggcttcgacacgtc 884
|| ||||||||||||||||| ||| |||||||||||| |||||||||||||||||||
Sbjct: 189 tccgatcccgaggagcctgcccagcgtgtacggcgagcagacgtacggcttcgacacgtc 130
Query: 885 caaggcccgcgcgctggggctggcggaattcaagggcgtcgaggagatgttcgacgacgc 944
|||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 129 caaggcccgcgcattggggctggtggacctcaagggcgtcgaggagatgttcgacgacgc 70
Query: 945 cgtcgcctcgttcataggccatggccatctccccgccgccgagga 989
||||| |||| ||| ||||||||||||||||||||||||||||||
Sbjct: 69 cgtcgactcgctcagaggccatggccatctccccgccgccgagga 25
>gb|CW072227.1|CW072227 104_325_10592141_114_30537 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10592141, DNA
sequence
Length = 604
Score = 446 bits (225), Expect = e-123
Identities = 315/345 (91%)
Strand = Plus / Plus
Query: 645 aggagagacggggaagttcacgacgtacgggaggatggggtacgtccacatcgacgacgt 704
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 146 aggagagacggttaagttcacggtgtacgggaggatggggtacgtccacatcgacgacgt 205
Query: 705 ggcgaggtgccacatgctggcgtacgaggccgcgggcgcccgagggaggtacatctgcag 764
||||||||||||||| |||||||||||| |||| ||||||| ||||||||||||||||
Sbjct: 206 ggcgaggtgccacatcctggcgtacgagtccgccggcgcccacgggaggtacatctgcaa 265
Query: 765 cgcggcggtgctggactgcggcgacctcgccgccctgctcgcgcggcggttcccagcgta 824
||||||||||||| |||||| ||||||| |||||||||||||||||||||||| |||||
Sbjct: 266 cgcggcggtgctgtgctgcggtgacctcgtcgccctgctcgcgcggcggttcccggcgta 325
Query: 825 ccccgtcccgaggagcctgccccgcgcctacggcgagcagtcgtacggcttcgacacgtc 884
|| ||||||||||||||||| ||| |||||||||||| |||||||||||||||||||
Sbjct: 326 tccgatcccgaggagcctgcccagcgtgtacggcgagcagacgtacggcttcgacacgtc 385
Query: 885 caaggcccgcgcgctggggctggcggaattcaagggcgtcgaggagatgttcgacgacgc 944
|||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 386 caaggcccgcgcattggggctggtggacctcaagggcgtcgaggagatgttcgacgacgc 445
Query: 945 cgtcgcctcgttcataggccatggccatctccccgccgccgagga 989
||||| |||| ||| ||||||||||||||||||||||||||||||
Sbjct: 446 cgtcgactcgctcagaggccatggccatctccccgccgccgagga 490
>gb|CW146117.1|CW146117 104_538_11138820_116_34979_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11138820, DNA
sequence
Length = 611
Score = 446 bits (225), Expect = e-123
Identities = 315/345 (91%)
Strand = Plus / Minus
Query: 645 aggagagacggggaagttcacgacgtacgggaggatggggtacgtccacatcgacgacgt 704
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 477 aggagagacggttaagttcacggtgtacgggaggatggggtacgtccacatcgacgacgt 418
Query: 705 ggcgaggtgccacatgctggcgtacgaggccgcgggcgcccgagggaggtacatctgcag 764
||||||||||||||| |||||||||||| |||| ||||||| ||||||||||||||||
Sbjct: 417 ggcgaggtgccacatcctggcgtacgagtccgccggcgcccacgggaggtacatctgcaa 358
Query: 765 cgcggcggtgctggactgcggcgacctcgccgccctgctcgcgcggcggttcccagcgta 824
||||||||||||| |||||| ||||||| |||||||||||||||||||||||| |||||
Sbjct: 357 cgcggcggtgctgtgctgcggtgacctcgtcgccctgctcgcgcggcggttcccggcgta 298
Query: 825 ccccgtcccgaggagcctgccccgcgcctacggcgagcagtcgtacggcttcgacacgtc 884
|| ||||||||||||||||| ||| |||||||||||| |||||||||||||||||||
Sbjct: 297 tccgatcccgaggagcctgcccagcgtgtacggcgagcagacgtacggcttcgacacgtc 238
Query: 885 caaggcccgcgcgctggggctggcggaattcaagggcgtcgaggagatgttcgacgacgc 944
|||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 237 caaggcccgcgcattggggctggtggacctcaagggcgtcgaggagatgttcgacgacgc 178
Query: 945 cgtcgcctcgttcataggccatggccatctccccgccgccgagga 989
||||| |||| ||| ||||||||||||||||||||||||||||||
Sbjct: 177 cgtcgactcgctcagaggccatggccatctccccgccgccgagga 133
>gb|CW446801.1|CW446801 fsbb001f179k03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f179k03, DNA
sequence
Length = 651
Score = 446 bits (225), Expect = e-123
Identities = 315/345 (91%)
Strand = Plus / Minus
Query: 645 aggagagacggggaagttcacgacgtacgggaggatggggtacgtccacatcgacgacgt 704
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 498 aggagagacggttaagttcacggtgtacgggaggatggggtacgtccacatcgacgacgt 439
Query: 705 ggcgaggtgccacatgctggcgtacgaggccgcgggcgcccgagggaggtacatctgcag 764
||||||||||||||| |||||||||||| |||| ||||||| ||||||||||||||||
Sbjct: 438 ggcgaggtgccacatcctggcgtacgagtccgccggcgcccacgggaggtacatctgcaa 379
Query: 765 cgcggcggtgctggactgcggcgacctcgccgccctgctcgcgcggcggttcccagcgta 824
||||||||||||| |||||| ||||||| |||||||||||||||||||||||| |||||
Sbjct: 378 cgcggcggtgctgtgctgcggtgacctcgtcgccctgctcgcgcggcggttcccggcgta 319
Query: 825 ccccgtcccgaggagcctgccccgcgcctacggcgagcagtcgtacggcttcgacacgtc 884
|| ||||||||||||||||| ||| |||||||||||| |||||||||||||||||||
Sbjct: 318 tccgatcccgaggagcctgcccagcgtgtacggcgagcagacgtacggcttcgacacgtc 259
Query: 885 caaggcccgcgcgctggggctggcggaattcaagggcgtcgaggagatgttcgacgacgc 944
|||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 258 caaggcccgcgcattggggctggtggacctcaagggcgtcgaggagatgttcgacgacgc 199
Query: 945 cgtcgcctcgttcataggccatggccatctccccgccgccgagga 989
||||| |||| ||| ||||||||||||||||||||||||||||||
Sbjct: 198 cgtcgactcgctcagaggccatggccatctccccgccgccgagga 154
>gb|CW464925.1|CW464925 fsbb001f215g22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f215g22, DNA
sequence
Length = 505
Score = 438 bits (221), Expect = e-121
Identities = 314/345 (91%)
Strand = Plus / Minus
Query: 645 aggagagacggggaagttcacgacgtacgggaggatggggtacgtccacatcgacgacgt 704
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 505 aggagagacggttaagttcacggtgtacgggaggatggggtacgtccacatcgacgacgt 446
Query: 705 ggcgaggtgccacatgctggcgtacgaggccgcgggcgcccgagggaggtacatctgcag 764
||||||||||||||| |||||||||||| |||| ||||||| ||||||||||||||||
Sbjct: 445 ggcgaggtgccacatcctggcgtacgagtccgccggcgcccacgggaggtacatctgcaa 386
Query: 765 cgcggcggtgctggactgcggcgacctcgccgccctgctcgcgcggcggttcccagcgta 824
||||||||||||| |||||| ||||| | |||||||||||||||||||||||| |||||
Sbjct: 385 cgcggcggtgctgtgctgcggtgacctagtcgccctgctcgcgcggcggttcccggcgta 326
Query: 825 ccccgtcccgaggagcctgccccgcgcctacggcgagcagtcgtacggcttcgacacgtc 884
|| ||||||||||||||||| ||| |||||||||||| |||||||||||||||||||
Sbjct: 325 tccgatcccgaggagcctgcccagcgtgtacggcgagcagacgtacggcttcgacacgtc 266
Query: 885 caaggcccgcgcgctggggctggcggaattcaagggcgtcgaggagatgttcgacgacgc 944
|||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 265 caaggcccgcgcattggggctggtggacctcaagggcgtcgaggagatgttcgacgacgc 206
Query: 945 cgtcgcctcgttcataggccatggccatctccccgccgccgagga 989
||||| |||| ||| ||||||||||||||||||||||||||||||
Sbjct: 205 cgtcgactcgctcagaggccatggccatctccccgccgccgagga 161
>gb|BI141675.1|BI141675 IP1_55_E06.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 376
Score = 436 bits (220), Expect = e-120
Identities = 316/348 (90%)
Strand = Plus / Plus
Query: 3 ggctaacactgctaagggtaaggtctgtgtcactggggcgtctggtttcatcgcctcctg 62
||||| ||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 26 ggctagcactggtaagggtaaagtctgtgtcactggggcatctggtttcatcgcctcctg 85
Query: 63 gctcgtcaagcggcttcttgagtctgggtaccatgtcctgggaacagtcagagacccagg 122
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 86 gctcatcaagcggcttcttgagtctgggtaccatgtcctcggaacagtcagagacccagg 145
Query: 123 gaatggcaagaaagtagggcacctctggggcctggaaggcgcaaaggaaaggctgcagct 182
|||| |||||||||||| |||||||||| |||||||||||||||| |||||||||||
Sbjct: 146 gaatcacaagaaagtaggacacctctgggttttggaaggcgcaaaggagaggctgcagct 205
Query: 183 cgtgagagctgatctcttggaggaagggagcttcgacgacgctgtgatggcttgcgaggg 242
||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 206 tgtgagagctgacctcttggaggaagggagctttgacgacgctgtgatggcttgtgaggg 265
Query: 243 cgtcttccacaccgcatcgcccgtcgtcaccggatctaattccaaggaggagatgcttga 302
|||||||||||| ||||| || ||| |||| |||| ||||||||||||| |||||| |
Sbjct: 266 cgtcttccacactgcatctcctgtcatcactaaatctgattccaaggaggaaatgcttaa 325
Query: 303 ttcagcaataaacggcacgatgaacgtgctacgctcgtgcaagaagaa 350
|||||||||||||||||| ||||||| ||||| || |||||||||||
Sbjct: 326 ttcagcaataaacggcactctgaacgttctacgttcatgcaagaagaa 373
>gb|CW128866.1|CW128866 104_510_11114251_116_34758_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11114251, DNA
sequence
Length = 563
Score = 422 bits (213), Expect = e-116
Identities = 303/333 (90%)
Strand = Plus / Plus
Query: 645 aggagagacggggaagttcacgacgtacgggaggatggggtacgtccacatcgacgacgt 704
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 231 aggagagacggttaagttcacggtgtacgggaggatggggtacgtccacatcgacgacgt 290
Query: 705 ggcgaggtgccacatgctggcgtacgaggccgcgggcgcccgagggaggtacatctgcag 764
||||||||||||||| |||||||||||| |||| ||||||| ||||||||||||||||
Sbjct: 291 ggcgaggtgccacatcctggcgtacgagtccgccggcgcccacgggaggtacatctgcaa 350
Query: 765 cgcggcggtgctggactgcggcgacctcgccgccctgctcgcgcggcggttcccagcgta 824
||||||||||||| |||||| ||||||| |||||||||||||||||||||||| |||||
Sbjct: 351 cgcggcggtgctgtgctgcggtgacctcgtcgccctgctcgcgcggcggttcccggcgta 410
Query: 825 ccccgtcccgaggagcctgccccgcgcctacggcgagcagtcgtacggcttcgacacgtc 884
|| ||||||||||||||||| ||| |||||||||||| |||||||||||||||||||
Sbjct: 411 tccgatcccgaggagcctgcccagcgtgtacggcgagcagacgtacggcttcgacacgtc 470
Query: 885 caaggcccgcgcgctggggctggcggaattcaagggcgtcgaggagatgttcgacgacgc 944
|||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 471 caaggcccgcgcattggggctggtggacctcaagggcgtcgaggagatgttcgacgacgc 530
Query: 945 cgtcgcctcgttcataggccatggccatctccc 977
||||| |||| ||| ||||||||||||||||||
Sbjct: 531 cgtcgactcgctcagaggccatggccatctccc 563
>gb|BG946880.1|BG946880 IP1_1_H02.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 459
Score = 357 bits (180), Expect = 1e-096
Identities = 258/284 (90%)
Strand = Plus / Plus
Query: 706 gcgaggtgccacatgctggcgtacgaggccgcgggcgcccgagggaggtacatctgcagc 765
|||||||||||||| |||||||||||| |||| ||||||| |||||||||||||||| |
Sbjct: 1 gcgaggtgccacatcctggcgtacgagtccgccggcgcccacgggaggtacatctgcaac 60
Query: 766 gcggcggtgctggactgcggcgacctcgccgccctgctcgcgcggcggttcccagcgtac 825
|||||||||||| |||||| ||||||| |||||||||||||||||||||||| |||||
Sbjct: 61 gcggcggtgctgtgctgcggtgacctcgtcgccctgctcgcgcggcggttcccggcgtat 120
Query: 826 cccgtcccgaggagcctgccccgcgcctacggcgagcagtcgtacggcttcgacacgtcc 885
|| ||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||
Sbjct: 121 ccgatcccgaggagcctgcccagcgtgtacggcgagcagacgtacggcttcgacacgtcc 180
Query: 886 aaggcccgcgcgctggggctggcggaattcaagggcgtcgaggagatgttcgacgacgcc 945
||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 181 aaggcccgcgcattggggctggtggacctcaagggcgtcgaggagatgttcgacgacgcc 240
Query: 946 gtcgcctcgttcataggccatggccatctccccgccgccgagga 989
|||| |||| ||| ||||||||||||||||||||||||||||||
Sbjct: 241 gtcgactcgctcagaggccatggccatctccccgccgccgagga 284
>gb|CW117055.1|CW117055 104_493_11107455_148_34610_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11107455, DNA
sequence
Length = 257
Score = 281 bits (142), Expect = 7e-074
Identities = 202/222 (90%)
Strand = Plus / Minus
Query: 768 ggcggtgctggactgcggcgacctcgccgccctgctcgcgcggcggttcccagcgtaccc 827
|||||||||| |||||| ||||||| |||||||||||||||||||||||| ||||| ||
Sbjct: 257 ggcggtgctgtgctgcggtgacctcgtcgccctgctcgcgcggcggttcccggcgtatcc 198
Query: 828 cgtcccgaggagcctgccccgcgcctacggcgagcagtcgtacggcttcgacacgtccaa 887
||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||
Sbjct: 197 gatcccgaggagcctgcccagcgtgtacggcgagcagacgtacggcttcgacacgtccaa 138
Query: 888 ggcccgcgcgctggggctggcggaattcaagggcgtcgaggagatgttcgacgacgccgt 947
||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 137 ggcccgcgcattggggctggtggacctcaagggcgtcgaggagatgttcgacgacgccgt 78
Query: 948 cgcctcgttcataggccatggccatctccccgccgccgagga 989
|| |||| ||| ||||||||||||||||||||||||||||||
Sbjct: 77 cgactcgctcagaggccatggccatctccccgccgccgagga 36
>gb|CW055083.1|CW055083 104_296_10516884_115_30175 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10516884, DNA
sequence
Length = 344
Score = 260 bits (131), Expect = 2e-067
Identities = 201/223 (90%), Gaps = 1/223 (0%)
Strand = Plus / Minus
Query: 768 ggcggtgctggactgcggcgacctcgccgccc-tgctcgcgcggcggttcccagcgtacc 826
|||||||||| |||||| ||||||| ||||| ||||||||| ||||||||| ||||| |
Sbjct: 341 ggcggtgctgtgctgcggtgacctcgtcgcccctgctcgcgccgcggttcccggcgtatc 282
Query: 827 ccgtcccgaggagcctgccccgcgcctacggcgagcagtcgtacggcttcgacacgtcca 886
| ||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||
Sbjct: 281 cgatcccgaggagcctgcccagcgtgtacggcgagcagacgtacggcttcgacacgtcca 222
Query: 887 aggcccgcgcgctggggctggcggaattcaagggcgtcgaggagatgttcgacgacgccg 946
|||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 221 aggcccgcgcattggggctggtggacctcaagggcgtcgaggagatgttcgacgacgccg 162
Query: 947 tcgcctcgttcataggccatggccatctccccgccgccgagga 989
||| |||| ||| ||||||||||||||||||||||||||||||
Sbjct: 161 tcgactcgctcagaggccatggccatctccccgccgccgagga 119
>gb|BI141403.1|BI141403 IP1_55_E06.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 327
Score = 244 bits (123), Expect = 1e-062
Identities = 171/187 (91%)
Strand = Plus / Plus
Query: 803 tcgcgcggcggttcccagcgtaccccgtcccgaggagcctgccccgcgcctacggcgagc 862
|||||||||||||||| ||||| || ||||||||||||||||| ||| ||||||||||
Sbjct: 1 tcgcgcggcggttcccggcgtatccgatcccgaggagcctgcccagcgtgtacggcgagc 60
Query: 863 agtcgtacggcttcgacacgtccaaggcccgcgcgctggggctggcggaattcaagggcg 922
|| ||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||
Sbjct: 61 agacgtacggcttcgacacgtccaaggcccgcgcattggggctggtggacctcaagggcg 120
Query: 923 tcgaggagatgttcgacgacgccgtcgcctcgttcataggccatggccatctccccgccg 982
||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||
Sbjct: 121 tcgaggagatgttcgacgacgccgtcgactcgctcagaggccatggccatctccccgccg 180
Query: 983 ccgagga 989
|||||||
Sbjct: 181 ccgagga 187
>gb|CL160199.1|CL160199 104_350_10804807_116_31823_247 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10804807, DNA
sequence
Length = 729
Score = 230 bits (116), Expect = 2e-058
Identities = 158/172 (91%)
Strand = Plus / Plus
Query: 645 aggagagacggggaagttcacgacgtacgggaggatggggtacgtccacatcgacgacgt 704
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 558 aggagagacggttaagttcacggtgtacgggaggatggggtacgtccacatcgacgacgt 617
Query: 705 ggcgaggtgccacatgctggcgtacgaggccgcgggcgcccgagggaggtacatctgcag 764
||||||||||||||| |||||||||||| |||| ||||||| ||||||||||||||||
Sbjct: 618 ggcgaggtgccacatcctggcgtacgagtccgccggcgcccacgggaggtacatctgcaa 677
Query: 765 cgcggcggtgctggactgcggcgacctcgccgccctgctcgcgcggcggttc 816
||||||||||||| |||||| ||||||| ||||||||||||||||||||||
Sbjct: 678 cgcggcggtgctgtgctgcggtgacctcgtcgccctgctcgcgcggcggttc 729
Score = 186 bits (94), Expect = 3e-045
Identities = 148/166 (89%)
Strand = Plus / Plus
Query: 482 agatatggtacgccgtcgcaaagatcctcgccgagaaggcagcctgggagttcgccggag 541
|||||||||| ||||| ||||||||||| ||||||||||| ||||||||||| ||| ||
Sbjct: 95 agatatggtatgccgttgcaaagatcctagccgagaaggcggcctgggagtttgccaaag 154
Query: 542 agcacaggatcgacctcgtcaccgttcttccgaccttcgttgtcggacctactctgtctc 601
|||||||||||||||| || || |||||||||||||| ||| ||||||||| |||||||
Sbjct: 155 agcacaggatcgaccttgtgactgttcttccgacctttgttatcggacctaacctgtctc 214
Query: 602 ctgagctcggccccaccgcttctgatgtcctcggcctgttccaagg 647
|||||||| ||||||| |||||||||||||||||| | ||||||||
Sbjct: 215 ctgagctcagccccactgcttctgatgtcctcggcttattccaagg 260
>gb|CL154458.1|CL154458 104_339_10781423_114_31371_287 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10781423, DNA
sequence
Length = 727
Score = 224 bits (113), Expect = 1e-056
Identities = 176/197 (89%)
Strand = Plus / Minus
Query: 287 aggaggagatgcttgattcagcaataaacggcacgatgaacgtgctacgctcgtgcaaga 346
||||||| |||||| ||||||||||||||||||| ||||||| ||||| || |||||||
Sbjct: 524 aggaggaaatgcttaattcagcaataaacggcactctgaacgttctacgttcatgcaaga 465
Query: 347 agaacccatcgctcaagagggttgtcctgacatcctcgtcgtcgacagtgaggatcaagg 406
|||| ||||| |||| ||||||||||||||| || |||||| |||| |||||||||||||
Sbjct: 464 agaatccatccctcaggagggttgtcctgacgtcttcgtcggcgaccgtgaggatcaagg 405
Query: 407 acgaagccgacctgccccctaacgtgctgctggacgaatcgtcgtggagctccatcgagt 466
|||||||||||||||||||||||||| ||||||| ||| | || ||||||||||| ||||
Sbjct: 404 acgaagccgacctgccccctaacgtgttgctggatgaaacatcatggagctccattgagt 345
Query: 467 tctgcgaaagtctccag 483
||||||||||||||||
Sbjct: 344 actgcgaaagtctccag 328
Score = 186 bits (94), Expect = 3e-045
Identities = 148/166 (89%)
Strand = Plus / Minus
Query: 482 agatatggtacgccgtcgcaaagatcctcgccgagaaggcagcctgggagttcgccggag 541
|||||||||| ||||| ||||||||||| ||||||||||| ||||||||||| ||| ||
Sbjct: 221 agatatggtatgccgttgcaaagatcctagccgagaaggcggcctgggagtttgccaaag 162
Query: 542 agcacaggatcgacctcgtcaccgttcttccgaccttcgttgtcggacctactctgtctc 601
|||||||||||||||| || || |||||||||||||| ||| ||||||||| |||||||
Sbjct: 161 agcacaggatcgaccttgtgactgttcttccgacctttgttatcggacctaacctgtctc 102
Query: 602 ctgagctcggccccaccgcttctgatgtcctcggcctgttccaagg 647
|||||||| ||||||| |||||||||||||||||| | ||||||||
Sbjct: 101 ctgagctcagccccactgcttctgatgtcctcggcttattccaagg 56
Score = 91.7 bits (46), Expect = 1e-016
Identities = 76/86 (88%)
Strand = Plus / Minus
Query: 204 ggaagggagcttcgacgacgctgtgatggcttgcgagggcgtcttccacaccgcatcgcc 263
|||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct: 727 ggaagggagctttgacgacgctgtgatggcttgtgagggcgtcttccacactgcatctcc 668
Query: 264 cgtcgtcaccggatctaattccaagg 289
||| |||| |||| |||||||||
Sbjct: 667 tgtcatcactaaatctgattccaagg 642
>gb|CW055082.1|CW055082 104_296_10516884_114_30174 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10516884, DNA
sequence
Length = 576
Score = 224 bits (113), Expect = 1e-056
Identities = 176/197 (89%)
Strand = Plus / Plus
Query: 287 aggaggagatgcttgattcagcaataaacggcacgatgaacgtgctacgctcgtgcaaga 346
||||||| |||||| ||||||||||||||||||| ||||||| ||||| || |||||||
Sbjct: 25 aggaggaaatgcttaattcagcaataaacggcactctgaacgttctacgttcatgcaaga 84
Query: 347 agaacccatcgctcaagagggttgtcctgacatcctcgtcgtcgacagtgaggatcaagg 406
|||| ||||| |||| ||||||||||||||| || |||||| |||| |||||||||||||
Sbjct: 85 agaatccatccctcaggagggttgtcctgacgtcttcgtcggcgaccgtgaggatcaagg 144
Query: 407 acgaagccgacctgccccctaacgtgctgctggacgaatcgtcgtggagctccatcgagt 466
|||||||||||||||||||||||||| ||||||| ||| | || ||||||||||| ||||
Sbjct: 145 acgaagccgacctgccccctaacgtgttgctggatgaaacatcatggagctccattgagt 204
Query: 467 tctgcgaaagtctccag 483
||||||||||||||||
Sbjct: 205 actgcgaaagtctccag 221
Score = 186 bits (94), Expect = 3e-045
Identities = 148/166 (89%)
Strand = Plus / Plus
Query: 482 agatatggtacgccgtcgcaaagatcctcgccgagaaggcagcctgggagttcgccggag 541
|||||||||| ||||| ||||||||||| ||||||||||| ||||||||||| ||| ||
Sbjct: 328 agatatggtatgccgttgcaaagatcctagccgagaaggcggcctgggagtttgccaaag 387
Query: 542 agcacaggatcgacctcgtcaccgttcttccgaccttcgttgtcggacctactctgtctc 601
|||||||||||||||| || || |||||||||||||| ||| ||||||||| |||||||
Sbjct: 388 agcacaggatcgaccttgtgactgttcttccgacctttgttatcggacctaacctgtctc 447
Query: 602 ctgagctcggccccaccgcttctgatgtcctcggcctgttccaagg 647
|||||||| ||||||| |||||||||||||||||| | ||||||||
Sbjct: 448 ctgagctcagccccactgcttctgatgtcctcggcttattccaagg 493
>gb|CW446802.1|CW446802 fsbb001f179k03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f179k03, DNA
sequence
Length = 712
Score = 224 bits (113), Expect = 1e-056
Identities = 176/197 (89%)
Strand = Plus / Plus
Query: 287 aggaggagatgcttgattcagcaataaacggcacgatgaacgtgctacgctcgtgcaaga 346
||||||| |||||| ||||||||||||||||||| ||||||| ||||| || |||||||
Sbjct: 155 aggaggaaatgcttaattcagcaataaacggcactctgaacgttctacgttcatgcaaga 214
Query: 347 agaacccatcgctcaagagggttgtcctgacatcctcgtcgtcgacagtgaggatcaagg 406
|||| ||||| |||| ||||||||||||||| || |||||| |||| |||||||||||||
Sbjct: 215 agaatccatccctcaggagggttgtcctgacgtcttcgtcggcgaccgtgaggatcaagg 274
Query: 407 acgaagccgacctgccccctaacgtgctgctggacgaatcgtcgtggagctccatcgagt 466
|||||||||||||||||||||||||| ||||||| ||| | || ||||||||||| ||||
Sbjct: 275 acgaagccgacctgccccctaacgtgttgctggatgaaacatcatggagctccattgagt 334
Query: 467 tctgcgaaagtctccag 483
||||||||||||||||
Sbjct: 335 actgcgaaagtctccag 351
Score = 186 bits (94), Expect = 3e-045
Identities = 148/166 (89%)
Strand = Plus / Plus
Query: 482 agatatggtacgccgtcgcaaagatcctcgccgagaaggcagcctgggagttcgccggag 541
|||||||||| ||||| ||||||||||| ||||||||||| ||||||||||| ||| ||
Sbjct: 458 agatatggtatgccgttgcaaagatcctagccgagaaggcggcctgggagtttgccaaag 517
Query: 542 agcacaggatcgacctcgtcaccgttcttccgaccttcgttgtcggacctactctgtctc 601
|||||||||||||||| || || |||||||||||||| ||| ||||||||| |||||||
Sbjct: 518 agcacaggatcgaccttgtgactgttcttccgacctttgttatcggacctaacctgtctc 577
Query: 602 ctgagctcggccccaccgcttctgatgtcctcggcctgttccaagg 647
|||||||| ||||||| |||||||||||||||||| | ||||||||
Sbjct: 578 ctgagctcagccccactgcttctgatgtcctcggcttattccaagg 623
>gb|CW501374.1|CW501374 fsbb001f297c11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f297c11, DNA
sequence
Length = 657
Score = 224 bits (113), Expect = 1e-056
Identities = 176/197 (89%)
Strand = Plus / Minus
Query: 287 aggaggagatgcttgattcagcaataaacggcacgatgaacgtgctacgctcgtgcaaga 346
||||||| |||||| ||||||||||||||||||| ||||||| ||||| || |||||||
Sbjct: 222 aggaggaaatgcttaattcagcaataaacggcactctgaacgttctacgttcatgcaaga 163
Query: 347 agaacccatcgctcaagagggttgtcctgacatcctcgtcgtcgacagtgaggatcaagg 406
|||| ||||| |||| ||||||||||||||| || |||||| |||| |||||||||||||
Sbjct: 162 agaatccatccctcaggagggttgtcctgacgtcttcgtcggcgaccgtgaggatcaagg 103
Query: 407 acgaagccgacctgccccctaacgtgctgctggacgaatcgtcgtggagctccatcgagt 466
|||||||||||||||||||||||||| ||||||| ||| | || ||||||||||| ||||
Sbjct: 102 acgaagccgacctgccccctaacgtgttgctggatgaaacatcatggagctccattgagt 43
Query: 467 tctgcgaaagtctccag 483
||||||||||||||||
Sbjct: 42 actgcgaaagtctccag 26
Score = 186 bits (94), Expect = 3e-045
Identities = 151/170 (88%)
Strand = Plus / Minus
Query: 120 agggaatggcaagaaagtagggcacctctggggcctggaaggcgcaaaggaaaggctgca 179
||||||| |||||||||||| |||||||||| |||||||||||||||| ||||||||
Sbjct: 509 agggaatcacaagaaagtaggacacctctgggttttggaaggcgcaaaggagaggctgca 450
Query: 180 gctcgtgagagctgatctcttggaggaagggagcttcgacgacgctgtgatggcttgcga 239
||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 449 gcttgtgagagctgacctcttggaggaagggagctttgacgacgctgtgatggcttgtga 390
Query: 240 gggcgtcttccacaccgcatcgcccgtcgtcaccggatctaattccaagg 289
||||||||||||||| ||||| || ||| |||| |||| |||||||||
Sbjct: 389 gggcgtcttccacactgcatctcctgtcatcactaaatctgattccaagg 340
>gb|BZ331519.1|BZ331519 hw10a10.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hw10a10 5', DNA sequence
Length = 728
Score = 214 bits (108), Expect = 1e-053
Identities = 175/196 (89%), Gaps = 1/196 (0%)
Strand = Plus / Plus
Query: 287 aggaggagatgcttgattcagcaataaacggcacgatgaacgtgctacgctcgtgcaaga 346
||||||| |||||| ||||||||||||||||||| ||||||| ||||| || |||||||
Sbjct: 534 aggaggaaatgcttaattcagcaataaacggcactctgaacgttctacgttcatgcaaga 593
Query: 347 agaacccatcgctcaagagggttgtcctgacatcctcgtcgtcgacagtgaggatcaagg 406
|||| ||||| |||| ||||||||||||||| || |||||| |||| |||||||||||||
Sbjct: 594 agaatccatccctcaggagggttgtcctgacgtcttcgtcggcgaccgtgaggatcaagg 653
Query: 407 acgaagccgacctgccccctaacgtgctgctggacgaatcgtcgtggagctccatcgagt 466
|||||||||||||||||||||||||| ||||||| ||| | || ||||||||||| ||||
Sbjct: 654 acgaagccgacctgccccctaacgtgttgctggatgaa-catcatggagctccattgagt 712
Query: 467 tctgcgaaagtctcca 482
|||||||||||||||
Sbjct: 713 actgcgaaagtctcca 728
Score = 186 bits (94), Expect = 3e-045
Identities = 151/170 (88%)
Strand = Plus / Plus
Query: 120 agggaatggcaagaaagtagggcacctctggggcctggaaggcgcaaaggaaaggctgca 179
||||||| |||||||||||| |||||||||| |||||||||||||||| ||||||||
Sbjct: 247 agggaatcacaagaaagtaggacacctctgggttttggaaggcgcaaaggagaggctgca 306
Query: 180 gctcgtgagagctgatctcttggaggaagggagcttcgacgacgctgtgatggcttgcga 239
||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 307 gcttgtgagagctgacctcttggaggaagggagctttgacgacgctgtgatggcttgtga 366
Query: 240 gggcgtcttccacaccgcatcgcccgtcgtcaccggatctaattccaagg 289
||||||||||||||| ||||| || ||| |||| |||| |||||||||
Sbjct: 367 gggcgtcttccacactgcatctcctgtcatcactaaatctgattccaagg 416
Score = 178 bits (90), Expect = 7e-043
Identities = 102/106 (96%)
Strand = Plus / Plus
Query: 17 agggtaaggtctgtgtcactggggcgtctggtttcatcgcctcctggctcgtcaagcggc 76
||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 11 agggtaaagtctgtgtcactggggcatctggtttcatcgcctcctggctcatcaagcggc 70
Query: 77 ttcttgagtctgggtaccatgtcctgggaacagtcagagacccagg 122
||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 71 ttcttgagtctgggtaccatgtcctcggaacagtcagagacccagg 116
>gb|CL154459.1|CL154459 104_339_10781423_116_31372_287 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10781423, DNA
sequence
Length = 707
Score = 190 bits (96), Expect = 2e-046
Identities = 114/120 (95%)
Strand = Plus / Plus
Query: 3 ggctaacactgctaagggtaaggtctgtgtcactggggcgtctggtttcatcgcctcctg 62
||||| ||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 516 ggctagcactggtaagggtaaagtctgtgtcactggggcatctggtttcatcgcctcctg 575
Query: 63 gctcgtcaagcggcttcttgagtctgggtaccatgtcctgggaacagtcagagacccagg 122
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 576 gctcatcaagcggcttcttgagtctgggtaccatgtcctcggaacagtcagagacccagg 635
>gb|CW146118.1|CW146118 104_538_11138820_148_34983_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11138820, DNA
sequence
Length = 645
Score = 186 bits (94), Expect = 3e-045
Identities = 148/166 (89%)
Strand = Plus / Plus
Query: 482 agatatggtacgccgtcgcaaagatcctcgccgagaaggcagcctgggagttcgccggag 541
|||||||||| ||||| ||||||||||| ||||||||||| ||||||||||| ||| ||
Sbjct: 183 agatatggtatgccgttgcaaagatcctagccgagaaggcggcctgggagtttgccaaag 242
Query: 542 agcacaggatcgacctcgtcaccgttcttccgaccttcgttgtcggacctactctgtctc 601
|||||||||||||||| || || |||||||||||||| ||| ||||||||| |||||||
Sbjct: 243 agcacaggatcgaccttgtgactgttcttccgacctttgttatcggacctaacctgtctc 302
Query: 602 ctgagctcggccccaccgcttctgatgtcctcggcctgttccaagg 647
|||||||| ||||||| |||||||||||||||||| | ||||||||
Sbjct: 303 ctgagctcagccccactgcttctgatgtcctcggcttattccaagg 348
Score = 95.6 bits (48), Expect = 8e-018
Identities = 69/76 (90%)
Strand = Plus / Plus
Query: 408 cgaagccgacctgccccctaacgtgctgctggacgaatcgtcgtggagctccatcgagtt 467
||||||||||||||||||||||||| ||||||| ||| | || ||||||||||| ||||
Sbjct: 1 cgaagccgacctgccccctaacgtgttgctggatgaaacatcatggagctccattgagta 60
Query: 468 ctgcgaaagtctccag 483
||||||||||||||||
Sbjct: 61 ctgcgaaagtctccag 76
>gb|CW464926.1|CW464926 fsbb001f215g22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f215g22, DNA
sequence
Length = 613
Score = 186 bits (94), Expect = 3e-045
Identities = 148/166 (89%)
Strand = Plus / Plus
Query: 482 agatatggtacgccgtcgcaaagatcctcgccgagaaggcagcctgggagttcgccggag 541
|||||||||| ||||| ||||||||||| ||||||||||| ||||||||||| ||| ||
Sbjct: 275 agatatggtatgccgttgcaaagatcctagccgagaaggcggcctgggagtttgccaaag 334
Query: 542 agcacaggatcgacctcgtcaccgttcttccgaccttcgttgtcggacctactctgtctc 601
|||||||||||||||| || || |||||||||||||| ||| ||||||||| |||||||
Sbjct: 335 agcacaggatcgaccttgtgactgttcttccgacctttgttatcggacctaacctgtctc 394
Query: 602 ctgagctcggccccaccgcttctgatgtcctcggcctgttccaagg 647
|||||||| ||||||| |||||||||||||||||| | ||||||||
Sbjct: 395 ctgagctcagccccactgcttctgatgtcctcggcttattccaagg 440
Score = 184 bits (93), Expect = 1e-044
Identities = 144/161 (89%)
Strand = Plus / Plus
Query: 323 tgaacgtgctacgctcgtgcaagaagaacccatcgctcaagagggttgtcctgacatcct 382
||||||| ||||| || ||||||||||| ||||| |||| ||||||||||||||| || |
Sbjct: 8 tgaacgttctacgttcatgcaagaagaatccatccctcaggagggttgtcctgacgtctt 67
Query: 383 cgtcgtcgacagtgaggatcaaggacgaagccgacctgccccctaacgtgctgctggacg 442
||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 68 cgtcggcgaccgtgaggatcaaggacgaagccgacctgccccctaacgtgttgctggatg 127
Query: 443 aatcgtcgtggagctccatcgagttctgcgaaagtctccag 483
|| | || ||||||||||| |||| ||||||||||||||||
Sbjct: 128 aaacatcatggagctccattgagtactgcgaaagtctccag 168
>gb|CW498402.1|CW498402 fsbb001f291j19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f291j19, DNA
sequence
Length = 649
Score = 186 bits (94), Expect = 3e-045
Identities = 151/170 (88%)
Strand = Plus / Minus
Query: 120 agggaatggcaagaaagtagggcacctctggggcctggaaggcgcaaaggaaaggctgca 179
||||||| |||||||||||| |||||||||| |||||||||||||||| ||||||||
Sbjct: 304 agggaatcacaagaaagtaggacacctctgggttttggaaggcgcaaaggagaggctgca 245
Query: 180 gctcgtgagagctgatctcttggaggaagggagcttcgacgacgctgtgatggcttgcga 239
||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 244 gcttgtgagagctgacctcttggaggaagggagctttgacgacgctgtgatggcttgtga 185
Query: 240 gggcgtcttccacaccgcatcgcccgtcgtcaccggatctaattccaagg 289
||||||||||||||| ||||| || ||| |||| |||| |||||||||
Sbjct: 184 gggcgtcttccacactgcatctcctgtcatcactaaatctgattccaagg 135
Score = 176 bits (89), Expect = 3e-042
Identities = 101/105 (96%)
Strand = Plus / Minus
Query: 18 gggtaaggtctgtgtcactggggcgtctggtttcatcgcctcctggctcgtcaagcggct 77
|||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 538 gggtaaagtctgtgtcactggggcatctggtttcatcgcctcctggctcatcaagcggct 479
Query: 78 tcttgagtctgggtaccatgtcctgggaacagtcagagacccagg 122
|||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 478 tcttgagtctgggtaccatgtcctcggaacagtcagagacccagg 434
>gb|CW117054.1|CW117054 104_493_11107455_116_34614_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11107455, DNA
sequence
Length = 229
Score = 178 bits (90), Expect = 7e-043
Identities = 138/154 (89%)
Strand = Plus / Plus
Query: 287 aggaggagatgcttgattcagcaataaacggcacgatgaacgtgctacgctcgtgcaaga 346
||||||| |||||| ||||||||||||||||||| ||||||| ||||| || |||||||
Sbjct: 65 aggaggaaatgcttaattcagcaataaacggcactctgaacgttctacgttcatgcaaga 124
Query: 347 agaacccatcgctcaagagggttgtcctgacatcctcgtcgtcgacagtgaggatcaagg 406
|||| ||||| |||| ||||||||||||||| || |||||| |||| |||||||||||||
Sbjct: 125 agaatccatccctcacgagggttgtcctgacgtcttcgtcggcgaccgtgaggatcaagg 184
Query: 407 acgaagccgacctgccccctaacgtgctgctgga 440
|||||||| ||||||||||||||||| |||||||
Sbjct: 185 acgaagcctacctgccccctaacgtgttgctgga 218
>gb|BI141055.1|BI141055 IP1_42_E11.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 496
Score = 58.0 bits (29), Expect = 2e-006
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 188 gagctgatctcttggaggaagggagcttcgacgacgctgtgatggcttgcgagggcgtct 247
|||||||||| ||||| ||||||||||| ||| | ||||| |||| || || |||||||
Sbjct: 215 gagctgatctgttggaagaagggagctttgacaatgctgtcatggactgtgatggcgtct 274
Query: 248 tccacaccgcatc 260
||||||| |||||
Sbjct: 275 tccacactgcatc 287
Score = 54.0 bits (27), Expect = 3e-005
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 285 caaggaggagatgcttgattcagcaataaacggcacgatgaacgtgctacgctcgtgcaa 344
||||||||| | ||||| | ||||| ||||||| || |||| |||||| | ||||||||
Sbjct: 318 caaggaggaaacgcttgttccagcagtaaacggtactctgaatgtgctaagatcgtgcaa 377
Query: 345 gaagaacccat 355
|||||||||||
Sbjct: 378 gaagaacccat 388
>gb|BI211450.1|BI211450 IP1_60_H10.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 524
Score = 58.0 bits (29), Expect = 2e-006
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 188 gagctgatctcttggaggaagggagcttcgacgacgctgtgatggcttgcgagggcgtct 247
|||||||||| ||||| ||||||||||| ||| | ||||| |||| || || |||||||
Sbjct: 215 gagctgatctgttggaagaagggagctttgacaatgctgtcatggactgtgatggcgtct 274
Query: 248 tccacaccgcatc 260
||||||| |||||
Sbjct: 275 tccacactgcatc 287
Score = 54.0 bits (27), Expect = 3e-005
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 285 caaggaggagatgcttgattcagcaataaacggcacgatgaacgtgctacgctcgtgcaa 344
||||||||| | ||||| | ||||| ||||||| || |||| |||||| | ||||||||
Sbjct: 318 caaggaggaaacgcttgttccagcagtaaacggtactctgaatgtgctaagatcgtgcaa 377
Query: 345 gaagaacccat 355
|||||||||||
Sbjct: 378 gaagaacccat 388
>gb|BI351580.1|BI351580 IP1_72_F10.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 497
Score = 58.0 bits (29), Expect = 2e-006
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 188 gagctgatctcttggaggaagggagcttcgacgacgctgtgatggcttgcgagggcgtct 247
|||||||||| ||||| ||||||||||| ||| | ||||| |||| || || |||||||
Sbjct: 188 gagctgatctgttggaagaagggagctttgacaatgctgtcatggactgtgatggcgtct 247
Query: 248 tccacaccgcatc 260
||||||| |||||
Sbjct: 248 tccacactgcatc 260
Score = 54.0 bits (27), Expect = 3e-005
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 285 caaggaggagatgcttgattcagcaataaacggcacgatgaacgtgctacgctcgtgcaa 344
||||||||| | ||||| | ||||| ||||||| || |||| |||||| | ||||||||
Sbjct: 291 caaggaggaaacgcttgttccagcagtaaacggtactctgaatgtgctaagatcgtgcaa 350
Query: 345 gaagaacccat 355
|||||||||||
Sbjct: 351 gaagaacccat 361
>emb|AX512962.1| Sequence 7 from Patent WO02063021
Length = 697
Score = 58.0 bits (29), Expect = 2e-006
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 188 gagctgatctcttggaggaagggagcttcgacgacgctgtgatggcttgcgagggcgtct 247
|||||||||| ||||| ||||||||||| ||| | ||||| |||| || || |||||||
Sbjct: 158 gagctgatctgttggaagaagggagctttgacaatgctgtcatggactgtgatggcgtct 217
Query: 248 tccacaccgcatc 260
||||||| |||||
Sbjct: 218 tccacactgcatc 230
Score = 46.1 bits (23), Expect = 0.007
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 305 cagcaataaacggcacgatgaacgtgctacgctcgtgcaagaagaacccat 355
||||| ||||||| || |||| |||||| | |||||||||||||||||||
Sbjct: 281 cagcagtaaacggtactctgaatgtgctaagatcgtgcaagaagaacccat 331
>gb|BG947600.1|BG947600 IP1_6_F06.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 189
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 960 aggccatggccatctccccgccgccgagga 989
||||||||||||| ||||||||||||||||
Sbjct: 17 aggccatggccatttccccgccgccgagga 46
>gb|CW287590.1|CW287590 104_765_11411495_116_35521_084 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11411495, DNA
sequence
Length = 690
Score = 44.1 bits (22), Expect = 0.027
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 ttcatcgcctcctggctcgtcaagcg 74
||||||||||||||||| ||||||||
Sbjct: 93 ttcatcgcctcctggcttgtcaagcg 118
>gb|CW400223.1|CW400223 fsbb001f090g22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f090g22, DNA
sequence
Length = 488
Score = 44.1 bits (22), Expect = 0.027
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 49 ttcatcgcctcctggctcgtcaagcg 74
||||||||||||||||| ||||||||
Sbjct: 174 ttcatcgcctcctggcttgtcaagcg 149
>gb|AW922257.1|AW922257 DG1_17_G01.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 559
Score = 44.1 bits (22), Expect = 0.027
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 ttcatcgcctcctggctcgtcaagcg 74
||||||||||||||||| ||||||||
Sbjct: 29 ttcatcgcctcctggcttgtcaagcg 54
>gb|BE125424.1|BE125424 DG1_25_G01.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 487
Score = 44.1 bits (22), Expect = 0.027
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 ttcatcgcctcctggctcgtcaagcg 74
||||||||||||||||| ||||||||
Sbjct: 29 ttcatcgcctcctggcttgtcaagcg 54
>gb|CF429087.1|CF429087 PH1_19_G12.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_19_G12_A002 5', mRNA sequence
Length = 721
Score = 44.1 bits (22), Expect = 0.027
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 ttcatcgcctcctggctcgtcaagcg 74
||||||||||||||||| ||||||||
Sbjct: 287 ttcatcgcctcctggcttgtcaagcg 312
>gb|CF432928.1|CF432928 NIT1_19_B11.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_19_B11_A002 5', mRNA sequence
Length = 700
Score = 44.1 bits (22), Expect = 0.027
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 ttcatcgcctcctggctcgtcaagcg 74
||||||||||||||||| ||||||||
Sbjct: 290 ttcatcgcctcctggcttgtcaagcg 315
>gb|CW093956.1|CW093956 104_457_11000061_148_37478_091 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11000061, DNA
sequence
Length = 728
Score = 42.1 bits (21), Expect = 0.11
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 49 ttcatcgcctcctggctcgtcaagc 73
||||| |||||||||||||||||||
Sbjct: 670 ttcattgcctcctggctcgtcaagc 694
>gb|CW098263.1|CW098263 104_464_11002911_148_34364_052 Sorghum methylation filtered
library (LibID: 104) Sorghum bicolor genomic clone
11002911, DNA sequence
Length = 683
Score = 42.1 bits (21), Expect = 0.11
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 49 ttcatcgcctcctggctcgtcaagc 73
|||||||||||||||||||| ||||
Sbjct: 49 ttcatcgcctcctggctcgtgaagc 73
>gb|CW202059.1|CW202059 104_628_11184893_116_37086_029 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11184893, DNA
sequence
Length = 680
Score = 42.1 bits (21), Expect = 0.11
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 49 ttcatcgcctcctggctcgtcaagc 73
|||||||||||||||||||| ||||
Sbjct: 153 ttcatcgcctcctggctcgtgaagc 129
>gb|CW202060.1|CW202060 104_628_11184893_148_37085_029 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11184893, DNA
sequence
Length = 711
Score = 42.1 bits (21), Expect = 0.11
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 49 ttcatcgcctcctggctcgtcaagc 73
|||||||||||||||||||| ||||
Sbjct: 668 ttcatcgcctcctggctcgtgaagc 692
>gb|CW217859.1|CW217859 104_651_11195875_148_37457_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195875, DNA
sequence
Length = 698
Score = 42.1 bits (21), Expect = 0.11
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 49 ttcatcgcctcctggctcgtcaagc 73
|||||||||||||||||||| ||||
Sbjct: 630 ttcatcgcctcctggctcgtgaagc 606
>gb|CW266537.1|CW266537 104_736_11232481_116_35281_009 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11232481, DNA
sequence
Length = 589
Score = 42.1 bits (21), Expect = 0.11
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 49 ttcatcgcctcctggctcgtcaagc 73
|||||||||||||||||||| ||||
Sbjct: 281 ttcatcgcctcctggctcgtgaagc 305
>gb|CW340854.1|CW340854 104_842_11486016_116_36172_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11486016, DNA
sequence
Length = 617
Score = 42.1 bits (21), Expect = 0.11
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 49 ttcatcgcctcctggctcgtcaagc 73
||||| |||||||||||||||||||
Sbjct: 584 ttcattgcctcctggctcgtcaagc 560
>gb|CW340855.1|CW340855 104_842_11486016_148_36171_096 Sorghum methylation filtered
library (LibID: 104) Sorghum bicolor genomic clone
11486016, DNA sequence
Length = 643
Score = 42.1 bits (21), Expect = 0.11
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 49 ttcatcgcctcctggctcgtcaagc 73
||||| |||||||||||||||||||
Sbjct: 35 ttcattgcctcctggctcgtcaagc 59
>gb|CW466289.1|CW466289 fsbb001f217h13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f217h13, DNA
sequence
Length = 675
Score = 42.1 bits (21), Expect = 0.11
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 243 cgtcttccacaccgcatcgcccgtc 267
||||||||||||||| |||||||||
Sbjct: 533 cgtcttccacaccgcgtcgcccgtc 557
>gb|CW486984.1|CW486984 fsbb001f252j04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f252j04, DNA
sequence
Length = 454
Score = 42.1 bits (21), Expect = 0.11
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 323 tgaacgtgctacgctcgtgcaagaagaacccat 355
|||| |||||| | |||||||||||||||||||
Sbjct: 6 tgaatgtgctaagatcgtgcaagaagaacccat 38
>gb|CW491338.1|CW491338 fsbb001f281c16k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f281c16, DNA
sequence
Length = 726
Score = 42.1 bits (21), Expect = 0.11
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 49 ttcatcgcctcctggctcgtcaagc 73
||||| |||||||||||||||||||
Sbjct: 272 ttcattgcctcctggctcgtcaagc 248
>gb|AW671852.1|AW671852 LG1_352_C05.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 570
Score = 42.1 bits (21), Expect = 0.11
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 49 ttcatcgcctcctggctcgtcaagc 73
|||||||||||||||||||| ||||
Sbjct: 252 ttcatcgcctcctggctcgtgaagc 276
>gb|BE360688.1|BE360688 DG1_66_C04.b2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 555
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 239 agggcgtcttccacaccgcatcgcccgtc 267
||||||||||||||||||| || ||||||
Sbjct: 158 agggcgtcttccacaccgcctcccccgtc 186
>gb|CD231600.1|CD231600 SS1_22_F09.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_22_F09_A012 5', mRNA sequence
Length = 697
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 239 agggcgtcttccacaccgcatcgcccgtc 267
||||||||||||||||||| || ||||||
Sbjct: 608 agggcgtcttccacaccgcctcccccgtc 636
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 319,525
Number of Sequences: 832831
Number of extensions: 319525
Number of successful extensions: 92983
Number of sequences better than 0.5: 87
Number of HSP's better than 0.5 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92812
Number of HSP's gapped (non-prelim): 170
length of query: 1079
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1059
effective length of database: 474,703,049
effective search space: 502710528891
effective search space used: 502710528891
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)