BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115097.2.2
(1086 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CL195140.1|CL195140 104_420_10942159_114_32302_028 Sorgh... 654 0.0
gb|CW136107.1|CW136107 104_521_11118204_116_34845_048 Sorgh... 543 e-152
gb|CW136108.1|CW136108 104_521_11118204_148_34841_048 Sorgh... 363 2e-098
gb|CW482801.1|CW482801 fsbb001f244b09f0 Sorghum methylation... 341 8e-092
gb|CW464658.1|CW464658 fsbb001f215a12k0 Sorghum methylation... 307 1e-081
gb|BG412450.1|BG412450 OV2_34_C12.g1_A002 Ovary 2 (OV2) Sor... 260 2e-067
gb|BG412749.1|BG412749 OV2_34_C12.b1_A002 Ovary 2 (OV2) Sor... 190 2e-046
gb|CL195141.1|CL195141 104_420_10942159_116_32306_028 Sorgh... 82 1e-013
gb|BI075831.1|BI075831 IP1_21_G05.b1_A002 Immature pannicle... 72 1e-010
gb|CN144206.1|CN144206 WOUND1_20_G04.g1_A002 Wounded leaves... 70 5e-010
gb|CW079162.1|CW079162 104_398_10899280_114_32367_050 Sorgh... 68 2e-009
gb|CW214676.1|CW214676 104_646_11194139_148_37052_036 Sorgh... 66 7e-009
gb|CF429238.1|CF429238 PH1_20_C06.g1_A002 Phosphorous-defic... 66 7e-009
gb|CN124528.1|CN124528 RHOH1_5_H07.b1_A002 Acid- and alkali... 66 7e-009
gb|CW220361.1|CW220361 104_655_11197308_116_37156_048 Sorgh... 64 3e-008
gb|CW220362.1|CW220362 104_655_11197308_148_37155_048 Sorgh... 64 3e-008
gb|CW481549.1|CW481549 fsbb001f241d06f0 Sorghum methylation... 64 3e-008
gb|CD204043.1|CD204043 HS1_3_A10.g1_A012 Heat-shocked seedl... 62 1e-007
gb|CD231880.1|CD231880 SS1_30_D11.g1_A012 Salt-stressed see... 62 1e-007
gb|CN136232.1|CN136232 OX1_41_D05.g1_A002 Oxidatively-stres... 62 1e-007
gb|CX607081.1|CX607081 ANR1_6_C12.g1_A002 Anaerobic roots S... 62 1e-007
gb|DN551840.1|DN551840 pSPR-RT-A-H2_G06_S131 pSPR Sorghum p... 62 1e-007
gb|BI140900.1|BI140900 IP1_40_E08.b1_A002 Immature pannicle... 60 5e-007
gb|CF429993.1|CF429993 PH1_25_G07.g1_A002 Phosphorous-defic... 60 5e-007
gb|CF430353.1|CF430353 PH1_27_A08.g1_A002 Phosphorous-defic... 60 5e-007
gb|CN136158.1|CN136158 OX1_41_D05.b1_A002 Oxidatively-stres... 60 5e-007
gb|CL192764.1|CL192764 104_415_10940470_114_32264_081 Sorgh... 58 2e-006
gb|CW448128.1|CW448128 fsbb001f181j14k0 Sorghum methylation... 58 2e-006
gb|CN142714.1|CN142714 WOUND1_11_F01.g1_A002 Wounded leaves... 58 2e-006
gb|CW030261.1|CW030261 104_258_10500149_114_30403 Sorghum m... 54 3e-005
gb|CW072097.1|CW072097 104_325_10592073_114_30535 Sorghum m... 54 3e-005
gb|CW135331.1|CW135331 104_519_11117788_148_34827_002 Sorgh... 52 1e-004
gb|BI245987.1|BI245987 IP1_66_C05.b1_A002 Immature pannicle... 52 1e-004
gb|CX611078.1|CX611078 ANR1_22_B08.g1_A002 Anaerobic roots ... 52 1e-004
gb|CL177978.1|CL177978 104_385_10894229_116_31914_293 Sorgh... 50 4e-004
gb|CW166190.1|CW166190 104_574_11152918_116_36483_081 Sorgh... 50 4e-004
gb|CW318660.1|CW318660 104_811_11474070_116_35879_031 Sorgh... 50 4e-004
gb|CW325048.1|CW325048 104_819_11477484_116_35915_034 Sorgh... 50 4e-004
gb|CW416233.1|CW416233 fsbb001f116l03k0 Sorghum methylation... 50 4e-004
gb|CW426483.1|CW426483 fsbb001f137o10k0 Sorghum methylation... 50 4e-004
gb|AW564506.1|AW564506 LG1_295_D10.b1_A002 Light Grown 1 (L... 50 4e-004
gb|BE360794.1|BE360794 DG1_67_C05.b2_A002 Dark Grown 1 (DG1... 50 4e-004
gb|BE917749.1|BE917749 OV1_6_F07.b1_A002 Ovary 1 (OV1) Sorg... 50 4e-004
gb|BG463957.1|BG463957 EM1_52_H10.b1_A002 Embryo 1 (EM1) So... 50 4e-004
gb|BG556631.1|BG556631 EM1_37_F06.b1_A002 Embryo 1 (EM1) So... 50 4e-004
gb|CN151326.1|CN151326 WOUND1_74_G01.g1_A002 Wounded leaves... 50 4e-004
gb|CW179633.1|CW179633 104_593_11160203_116_36623_034 Sorgh... 48 0.002
gb|CW246309.1|CW246309 104_707_11221289_116_35084_077 Sorgh... 48 0.002
gb|CW260111.1|CW260111 104_726_11228790_116_35191_019 Sorgh... 48 0.002
gb|CW260112.1|CW260112 104_726_11228790_148_35187_019 Sorgh... 48 0.002
gb|CW345705.1|CW345705 104_848_11488642_116_36212_033 Sorgh... 48 0.002
gb|CW379038.1|CW379038 fsbb001f058b16f0 Sorghum methylation... 48 0.002
gb|CW406941.1|CW406941 fsbb001f100d03k0 Sorghum methylation... 48 0.002
gb|BF421314.1|BF421314 FM1_7_B08.b1_A003 Floral-Induced Mer... 48 0.002
gb|CN146336.1|CN146336 WOUND1_39_D07.g1_A002 Wounded leaves... 48 0.002
gb|CX607108.1|CX607108 ANR1_6_F04.g1_A002 Anaerobic roots S... 48 0.002
gb|CL172100.1|CL172100 104_374_10889911_116_31775_199 Sorgh... 46 0.007
gb|CL172101.1|CL172101 104_374_10889911_148_31774_199 Sorgh... 46 0.007
gb|CW059494.1|CW059494 104_302_10519350_114_30165 Sorghum m... 46 0.007
gb|CW143277.1|CW143277 104_535_11137329_148_34958_047 Sorgh... 46 0.007
gb|CW163410.1|CW163410 104_571_11151445_148_36458_063 Sorgh... 46 0.007
gb|CW318661.1|CW318661 104_811_11474070_148_35883_031 Sorgh... 46 0.007
gb|CW379039.1|CW379039 fsbb001f058b16k0 Sorghum methylation... 46 0.007
gb|CW386714.1|CW386714 fsbb001f070m01f0 Sorghum methylation... 46 0.007
gb|BE917670.1|BE917670 OV1_6_F07.g1_A002 Ovary 1 (OV1) Sorg... 46 0.007
gb|CL171843.1|CL171843 104_374_10889716_116_31775_004 Sorgh... 44 0.027
gb|CL174843.1|CL174843 104_379_10891942_148_31768_310 Sorgh... 44 0.027
gb|CW126910.1|CW126910 104_507_11113147_148_34730_068 Sorgh... 44 0.027
gb|CW204510.1|CW204510 104_632_11186581_116_37060_055 Sorgh... 44 0.027
gb|CW221659.1|CW221659 104_656_11198028_148_37170_034 Sorgh... 44 0.027
gb|CW471323.1|CW471323 fsbb001f225c11k0 Sorghum methylation... 44 0.027
gb|BG049384.1|BG049384 OV1_19_C06.g1_A002 Ovary 1 (OV1) Sor... 44 0.027
gb|BG240213.1|BG240213 OV1_19_C06.b1_A002 Ovary 1 (OV1) Sor... 44 0.027
gb|CL150304.1|CL150304 104_331_10778427_116_31356_363 Sorgh... 42 0.11
gb|CW029128.1|CW029128 104_256_10499499_114_30399 Sorghum m... 42 0.11
gb|CW038342.1|CW038342 104_270_10504868_115_30386 Sorghum m... 42 0.11
gb|CW230206.1|CW230206 104_671_11207725_116_37267_049 Sorgh... 42 0.11
gb|CW355038.1|CW355038 fsbb001f019i03k0 Sorghum methylation... 42 0.11
gb|CW371631.1|CW371631 fsbb001f047d01f0 Sorghum methylation... 42 0.11
gb|CW392760.1|CW392760 fsbb001f079i10f0 Sorghum methylation... 42 0.11
gb|CW408700.1|CW408700 fsbb001f102l07f0 Sorghum methylation... 42 0.11
gb|CW471322.1|CW471322 fsbb001f225c11f0 Sorghum methylation... 42 0.11
gb|BE361754.1|BE361754 DG1_82_G01.b1_A002 Dark Grown 1 (DG1... 42 0.11
gb|BG052144.1|BG052144 RHIZ2_6_F11.b1_A003 Rhizome2 (RHIZ2)... 42 0.11
gb|BG355452.1|BG355452 EM1_16_F05.b1_A002 Embryo 1 (EM1) So... 42 0.11
gb|CD230048.1|CD230048 SS1_40_H09.g1_A012 Salt-stressed see... 42 0.11
gb|CD432827.1|CD432827 ETH1_33_A06.g1_A002 Ethylene-treated... 42 0.11
gb|CN134486.1|CN134486 OX1_26_D09.g1_A002 Oxidatively-stres... 42 0.11
gb|CX620549.1|CX620549 GABR1_52_C02.g1_A002 GA- or brassino... 42 0.11
gb|CL154623.1|CL154623 104_340_10781548_114_31469_028 Sorgh... 40 0.42
gb|CL159581.1|CL159581 104_349_10804357_116_31382_181 Sorgh... 40 0.42
gb|CL181627.1|CL181627 104_392_10896876_148_31925_252 Sorgh... 40 0.42
gb|CW029129.1|CW029129 104_256_10499499_116_30400 Sorghum m... 40 0.42
gb|CW087663.1|CW087663 104_432_10947761_114_32550_073 Sorgh... 40 0.42
gb|CW087664.1|CW087664 104_432_10947761_116_32554_073 Sorgh... 40 0.42
gb|CW134835.1|CW134835 104_519_11117521_148_34824_011 Sorgh... 40 0.42
gb|CW140252.1|CW140252 104_530_11135684_148_34917_068 Sorgh... 40 0.42
gb|CW169189.1|CW169189 104_579_11154540_148_36501_046 Sorgh... 40 0.42
gb|CW214760.1|CW214760 104_646_11194182_116_37049_017 Sorgh... 40 0.42
gb|CW227643.1|CW227643 104_667_11205918_148_37245_029 Sorgh... 40 0.42
gb|CW288528.1|CW288528 104_767_11411999_148_35539_096 Sorgh... 40 0.42
gb|CW294783.1|CW294783 104_775_11415367_116_35604_018 Sorgh... 40 0.42
gb|CW294784.1|CW294784 104_775_11415367_148_35608_018 Sorgh... 40 0.42
gb|CW343807.1|CW343807 104_846_11487622_116_36192_091 Sorgh... 40 0.42
gb|CW343808.1|CW343808 104_846_11487622_148_36191_091 Sorgh... 40 0.42
gb|CW351056.1|CW351056 fsbb001f012k14k0 Sorghum methylation... 40 0.42
gb|CW417154.1|CW417154 fsbb001f120a10f0 Sorghum methylation... 40 0.42
gb|CW417155.1|CW417155 fsbb001f120a10k0 Sorghum methylation... 40 0.42
gb|CW431323.1|CW431323 fsbb001f145h12f0 Sorghum methylation... 40 0.42
gb|CW461974.1|CW461974 fsbb001f209o05f0 Sorghum methylation... 40 0.42
gb|BG102282.1|BG102282 RHIZ2_24_D04.b1_A003 Rhizome2 (RHIZ2... 40 0.42
gb|BG357684.1|BG357684 OV2_29_A05.b1_A002 Ovary 2 (OV2) Sor... 40 0.42
gb|CD235047.1|CD235047 SS1_19_A02.g1_A012 Salt-stressed see... 40 0.42
gb|CF429677.1|CF429677 PH1_23_G06.g1_A002 Phosphorous-defic... 40 0.42
gb|CF480255.1|CF480255 POL1_64_D10.g1_A002 Pollen Sorghum b... 40 0.42
gb|CF480604.1|CF480604 POL1_66_F07.g1_A002 Pollen Sorghum b... 40 0.42
gb|CF481582.1|CF481582 POL1_72_G04.g1_A002 Pollen Sorghum b... 40 0.42
gb|CF483030.1|CF483030 POL1_10_F12.g1_A002 Pollen Sorghum b... 40 0.42
gb|CF483356.1|CF483356 POL1_21_E05.g1_A002 Pollen Sorghum b... 40 0.42
gb|CF483514.1|CF483514 POL1_22_G01.g1_A002 Pollen Sorghum b... 40 0.42
gb|CF483530.1|CF483530 POL1_22_H06.g1_A002 Pollen Sorghum b... 40 0.42
gb|CF484035.1|CF484035 POL1_2_E09.g1_A002 Pollen Sorghum bi... 40 0.42
gb|CF484058.1|CF484058 POL1_2_H04.g1_A002 Pollen Sorghum bi... 40 0.42
gb|CF485111.1|CF485111 POL1_29_B06.g1_A002 Pollen Sorghum b... 40 0.42
gb|CF485607.1|CF485607 POL1_32_C02.g1_A002 Pollen Sorghum b... 40 0.42
gb|CF485620.1|CF485620 POL1_32_D03.g1_A002 Pollen Sorghum b... 40 0.42
gb|CF486727.1|CF486727 POL1_39_A01.g1_A002 Pollen Sorghum b... 40 0.42
gb|CF486942.1|CF486942 POL1_40_F11.g1_A002 Pollen Sorghum b... 40 0.42
gb|CF487238.1|CF487238 POL1_42_C11.g1_A002 Pollen Sorghum b... 40 0.42
gb|CF487422.1|CF487422 POL1_43_E07.g1_A002 Pollen Sorghum b... 40 0.42
gb|CF487539.1|CF487539 POL1_44_A01.g1_A002 Pollen Sorghum b... 40 0.42
gb|CF487752.1|CF487752 POL1_45_E10.g1_A002 Pollen Sorghum b... 40 0.42
gb|CF488822.1|CF488822 POL1_52_A07.g1_A002 Pollen Sorghum b... 40 0.42
gb|CF489450.1|CF489450 POL1_57_D11.g1_A002 Pollen Sorghum b... 40 0.42
gb|CF489624.1|CF489624 POL1_58_E04.g1_A002 Pollen Sorghum b... 40 0.42
gb|CF489922.1|CF489922 POL1_61_A04.g1_A002 Pollen Sorghum b... 40 0.42
>gb|CL195140.1|CL195140 104_420_10942159_114_32302_028 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10942159, DNA
sequence
Length = 654
Score = 654 bits (330), Expect = 0.0
Identities = 435/470 (92%)
Strand = Plus / Minus
Query: 394 tggtggtgacggcgaccgacctgtgcccgcccaacgaccagcagtccgcggacagcggcg 453
|||||||||||||||| || |||||||||||||||| ||| |||| |||||||||||||
Sbjct: 628 tggtggtgacggcgacgaacttgtgcccgcccaacgagcagtagtcggcggacagcggcg 569
Query: 454 ggtggtgcaacccgccgcgggagcacttcgacctcagcatgcccgcgttcctccagatcg 513
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 568 ggtggtgcaacccgccgcgggagcacttcgacctgtccatgccggcgttcctccagatcg 509
Query: 514 cacaggagaaggccggcatcgtgcccatctcctaccgcagggtggcgtgcacgaagcagg 573
| ||||||||||||||||||||||| |||||||||| ||||||||||| ||| |||||
Sbjct: 508 cggaggagaaggccggcatcgtgcccgtctcctaccggcgggtggcgtgcgcgaggcagg 449
Query: 574 gcggcatccggtacaccatcaccgggaacaagtacttcaacatggtgacgatcaccaacg 633
|||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 448 gcggcatccggtacgccatcgccgggaacaagtacttcaacatggtgacggtcaccaacg 389
Query: 634 taggcggcgccggcgacatcgcggcggtgtcggtgaaggggagcaagcgcgttaagtgga 693
| ||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||
Sbjct: 388 tgggcggcgccggcgacgtggcggcggtgtcggtgaaggggagcaagcgcgtcaagtgga 329
Query: 694 cggagatgaagcgcaactgggggcaagtgtggcagaccggggaggacctcacctgcgagt 753
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 328 cggagctgaagcgcaactggggggtagtgtggcagaccggggaggacctcacctgcgagt 269
Query: 754 cgctgacgttccgggtgatgactagcgaccaccgcaaggccacctcatggcacgttctcc 813
||||||||||| |||||||||| ||||||||||||||||||| || |||||||| ||||
Sbjct: 268 cgctgacgttcagggtgatgaccggcgaccaccgcaaggccacgtcgtggcacgtcctcc 209
Query: 814 ccgctgactggaagttcggcgtcacgtaccaggcgtccaagaacttctaa 863
||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ccgaggactggaagttcggcgtcacgtaccaggcgtccaagaacttctaa 159
>gb|CW136107.1|CW136107 104_521_11118204_116_34845_048 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11118204, DNA
sequence
Length = 597
Score = 543 bits (274), Expect = e-152
Identities = 364/394 (92%)
Strand = Plus / Minus
Query: 470 gcgggagcacttcgacctcagcatgcccgcgttcctccagatcgcacaggagaaggccgg 529
|||||||||||||||||| |||||| |||||| |||||||||| |||||||||||||
Sbjct: 597 gcgggagcacttcgacctgtccatgccggcgttcttccagatcgcggaggagaaggccgg 538
Query: 530 catcgtgcccatctcctaccgcagggtggcgtgcacgaagcagggcggcatccggtacac 589
|||||||||| |||||||||| ||||||||||| ||| ||||||||||||||||||| |
Sbjct: 537 catcgtgcccgtctcctaccggcgggtggcgtgcgcgaggcagggcggcatccggtacgc 478
Query: 590 catcaccgggaacaagtacttcaacatggtgacgatcaccaacgtaggcggcgccggcga 649
|||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 477 catcgccgggaacaagtacttcaacatggtgacggtcaccaacgtgggcggcgccggcga 418
Query: 650 catcgcggcggtgtcggtgaaggggagcaagcgcgttaagtggacggagatgaagcgcaa 709
| | |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 417 cgtggcggcggtgtcggtgaaggggagcaagcgcgtcaagtggacggagctgaagcgcaa 358
Query: 710 ctgggggcaagtgtggcagaccggggaggacctcacctgcgagtcgctgacgttccgggt 769
||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 357 ctggggggtagtgtggcagaccggggaggacctcacctgcgagtcgctgacgttcagggt 298
Query: 770 gatgactagcgaccaccgcaaggccacctcatggcacgttctccccgctgactggaagtt 829
|||||| ||||||||||||||||||| || |||||||| ||||||| |||||||||||
Sbjct: 297 gatgaccggcgaccaccgcaaggccacgtcgtggcacgtcctccccgaggactggaagtt 238
Query: 830 cggcgtcacgtaccaggcgtccaagaacttctaa 863
||||||||||||||||||||||||||||||||||
Sbjct: 237 cggcgtcacgtaccaggcgtccaagaacttctaa 204
Score = 40.1 bits (20), Expect = 0.42
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 994 aaatcaatatgcaaattcaaatga 1017
|||||||| |||||||||||||||
Sbjct: 56 aaatcaatgtgcaaattcaaatga 33
>gb|CW136108.1|CW136108 104_521_11118204_148_34841_048 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11118204, DNA
sequence
Length = 526
Score = 363 bits (183), Expect = 2e-098
Identities = 289/324 (89%), Gaps = 3/324 (0%)
Strand = Plus / Plus
Query: 59 gtcgctgctggtcgccgtgctagcggtggc---cgccggtgtcgccaacgccggccacgc 115
||||||||||||||||||||| |||||||| ||||| ||||||||| |||||| |||
Sbjct: 62 gtcgctgctggtcgccgtgctcgcggtggcggccgccgatgtcgccaatgccggcggcgc 121
Query: 116 caagcccctgacgcctggcgggcgcgtggtacaccacaaccacggcaagttcacggctgg 175
||||||||||||||| |||||||||||||| ||||||||||||||||||||||| || ||
Sbjct: 122 caagcccctgacgcccggcgggcgcgtggtgcaccacaaccacggcaagttcaccgccgg 181
Query: 176 gccgnggaaacccgcccacgcgaccttctacggcgggcgggatgggtccggcaccacggc 235
| |||| | |||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 182 cgagtggaagcgcgcccacgcgaccttctacggcggccgggacgggtccggcaccacggc 241
Query: 236 gggcgcgtgcgggtacaaggacacgcgcgcgcaggggtatggcgtgcagacggtggccgt 295
||||||||||||||||||||||||||| | |||| || ||||||||||||||||||||
Sbjct: 242 gggcgcgtgcgggtacaaggacacgcggtccgagggctacggcgtgcagacggtggccgt 301
Query: 296 gagcacggtgctgttcggtgacggcgcggcctgcggcgggtgctacgaggtgcgctgcgt 355
|||| ||||||||||||| | ||||||||||||||||| |||||||||||||| |||||
Sbjct: 302 gagctcggtgctgttcggcaatggcgcggcctgcggcggttgctacgaggtgcggtgcgt 361
Query: 356 ggacagccctagcgggtgcaagcc 379
||||||||| ||||||||||||
Sbjct: 362 ggacagccccgacgggtgcaagcc 385
Score = 153 bits (77), Expect = 4e-035
Identities = 104/113 (92%)
Strand = Plus / Plus
Query: 393 ctggtggtgacggcgaccgacctgtgcccgcccaacgaccagcagtccgcggacagcggc 452
||||||||||||||||| ||||||||||||||||||| ||| |||| ||||||||||||
Sbjct: 414 ctggtggtgacggcgacgaacctgtgcccgcccaacgagcagtagtctgcggacagcggc 473
Query: 453 gggtggtgcaacccgccgcgggagcacttcgacctcagcatgcccgcgttcct 505
||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 474 gggtggtgcaacccgccgcgggagcacttcgacctgtccatgccggcgttcct 526
>gb|CW482801.1|CW482801 fsbb001f244b09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f244b09, DNA
sequence
Length = 515
Score = 341 bits (172), Expect = 8e-092
Identities = 288/325 (88%), Gaps = 4/325 (1%)
Strand = Plus / Minus
Query: 59 gtcgctgctggtcgccgtgctagcggtggc---cgccggtgtcgcc-aacgccggccacg 114
||||||||||||||||||||| |||||||| ||||| ||||||| || |||||| ||
Sbjct: 498 gtcgctgctggtcgccgtgctcgcggtggcggccgccgatgtcgcccaatgccggcggcg 439
Query: 115 ccaagcccctgacgcctggcgggcgcgtggtacaccacaaccacggcaagttcacggctg 174
|||||||||||||||| |||||||||||||| ||||||| ||||||||||||||| || |
Sbjct: 438 ccaagcccctgacgcccggcgggcgcgtggtgcaccacacccacggcaagttcaccgccg 379
Query: 175 ggccgnggaaacccgcccacgcgaccttctacggcgggcgggatgggtccggcaccacgg 234
| | |||| | |||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 378 gcgagtggaagcgcgcccacgcgaccttctacggcggccgggacgggtccggcaccacgg 319
Query: 235 cgggcgcgtgcgggtacaaggacacgcgcgcgcaggggtatggcgtgcagacggtggccg 294
|||||||||||||||||||||||||||| | |||| || |||||||||||||||||||
Sbjct: 318 cgggcgcgtgcgggtacaaggacacgcggtccgagggctacggcgtgcagacggtggccg 259
Query: 295 tgagcacggtgctgttcggtgacggcgcggcctgcggcgggtgctacgaggtgcgctgcg 354
||||| ||||||||||||| | ||||||||||||||||| |||||||||||||| ||||
Sbjct: 258 tgagctcggtgctgttcggcaatggcgcggcctgcggcggttgctacgaggtgcggtgcg 199
Query: 355 tggacagccctagcgggtgcaagcc 379
|||||||||| ||||||||||||
Sbjct: 198 tggacagccccgacgggtgcaagcc 174
Score = 178 bits (90), Expect = 7e-043
Identities = 123/134 (91%)
Strand = Plus / Minus
Query: 393 ctggtggtgacggcgaccgacctgtgcccgcccaacgaccagcagtccgcggacagcggc 452
||||||||||||||||| ||||||||||||||||||| ||| |||| ||||||||||||
Sbjct: 145 ctggtggtgacggcgacgaacctgtgcccgcccaacgagcagtagtcggcggacagcggc 86
Query: 453 gggtggtgcaacccgccgcgggagcacttcgacctcagcatgcccgcgttcctccagatc 512
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 85 gggtggtgcaacccgccgcgggagcacttcgacctgtccatgccggcgttcctccagatc 26
Query: 513 gcacaggagaaggc 526
|| ||||||||||
Sbjct: 25 gcggaggagaaggc 12
>gb|CW464658.1|CW464658 fsbb001f215a12k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f215a12, DNA
sequence
Length = 278
Score = 307 bits (155), Expect = 1e-081
Identities = 238/266 (89%)
Strand = Plus / Minus
Query: 114 gccaagcccctgacgcctggcgggcgcgtggtacaccacaaccacggcaagttcacggct 173
||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 278 gccaagcccctaacgcccggcgggcgcgtggtgcaccacaaccacggcaagttcaccgcc 219
Query: 174 gggccgnggaaacccgcccacgcgaccttctacggcgggcgggatgggtccggcaccacg 233
|| | |||| | |||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 218 ggcgagtggaagcgcgcccacgcgaccttctacggcggccgggacgggtccggcaccacg 159
Query: 234 gcgggcgcgtgcgggtacaaggacacgcgcgcgcaggggtatggcgtgcagacggtggcc 293
||||||||||||||||||||||||||||| | |||| || ||||||||||||||||||
Sbjct: 158 gcgggcgcgtgcgggtacaaggacacgcggtccgagggctacggcgtgcagacggtggcc 99
Query: 294 gtgagcacggtgctgttcggtgacggcgcggcctgcggcgggtgctacgaggtgcgctgc 353
|||||| ||||||||||||| | ||||||||||||||||| |||||||||||||| |||
Sbjct: 98 gtgagctcggtgctgttcggcaatggcgcggcctgcggcggttgctacgaggtgcggtgc 39
Query: 354 gtggacagccctagcgggtgcaagcc 379
||||||||||| ||||||||||||
Sbjct: 38 gtggacagccccgacgggtgcaagcc 13
>gb|BG412450.1|BG412450 OV2_34_C12.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 657
Score = 260 bits (131), Expect = 2e-067
Identities = 284/335 (84%)
Strand = Plus / Plus
Query: 474 gagcacttcgacctcagcatgcccgcgttcctccagatcgcacaggagaaggccggcatc 533
|||||||||||||||| |||||| ||||||||| |||||| ||||||||||||||||
Sbjct: 206 gagcacttcgacctcaccatgccggcgttcctcaagatcgacgaggagaaggccggcatt 265
Query: 534 gtgcccatctcctaccgcagggtggcgtgcacgaagcagggcggcatccggtacaccatc 593
||||||||| |||| |||| |||||||||| ||| ||| |||||||||||||||||||||
Sbjct: 266 gtgcccatcacctatcgcaaggtggcgtgcgcgaggcaaggcggcatccggtacaccatc 325
Query: 594 accgggaacaagtacttcaacatggtgacgatcaccaacgtaggcggcgccggcgacatc 653
|| |||||| | ||| ||||||||||| | | |||||||| ||||||||||| ||| |
Sbjct: 326 acggggaacccgaactacaacatggtgatggtgaccaacgtgggcggcgccggggacgtg 385
Query: 654 gcggcggtgtcggtgaaggggagcaagcgcgttaagtggacggagatgaagcgcaactgg 713
| |||| ||||||||||||| | ||||||||| ||||||||| ||||||||||| ||||
Sbjct: 386 gtggcgctgtcggtgaagggcaacaagcgcgtcaagtggacgccgatgaagcgcagctgg 445
Query: 714 gggcaagtgtggcagaccggggaggacctcacctgcgagtcgctgacgttccgggtgatg 773
|| || | ||| || | || |||||||| ||||||||||||||||||| || |||
Sbjct: 446 ggacagctctggatcacggaggtcaacctcaccggcgagtcgctgacgttccgcgtcatg 505
Query: 774 actagcgaccaccgcaaggccacctcatggcacgt 808
|| |||||||||||||||||||||| ||||||||
Sbjct: 506 accggcgaccaccgcaaggccacctcctggcacgt 540
>gb|BG412749.1|BG412749 OV2_34_C12.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 607
Score = 190 bits (96), Expect = 2e-046
Identities = 183/212 (86%)
Strand = Plus / Plus
Query: 474 gagcacttcgacctcagcatgcccgcgttcctccagatcgcacaggagaaggccggcatc 533
|||||||||||||||| |||||| ||||||||| |||||| ||||||||||||||||
Sbjct: 396 gagcacttcgacctcaccatgccggcgttcctcaagatcgacgaggagaaggccggcatt 455
Query: 534 gtgcccatctcctaccgcagggtggcgtgcacgaagcagggcggcatccggtacaccatc 593
||||||||| |||| |||| |||||||||| ||| ||| |||||||||||||||||||||
Sbjct: 456 gtgcccatcacctatcgcaaggtggcgtgcgcgaggcaaggcggcatccggtacaccatc 515
Query: 594 accgggaacaagtacttcaacatggtgacgatcaccaacgtaggcggcgccggcgacatc 653
|| |||||| | ||| ||||||||||| | | |||||||| ||||||||||| ||| |
Sbjct: 516 acggggaacccgaactacaacatggtgatggtgaccaacgtgggcggcgccggggacgtg 575
Query: 654 gcggcggtgtcggtgaaggggagcaagcgcgt 685
| |||| ||||||||||||| | |||||||||
Sbjct: 576 gtggcgctgtcggtgaagggcaacaagcgcgt 607
Score = 56.0 bits (28), Expect = 7e-006
Identities = 59/67 (88%), Gaps = 3/67 (4%)
Strand = Plus / Plus
Query: 192 cacgcgaccttctacggcgggcgggatgggtccggcaccacgg-cg--ggcgcgtgcggg 248
|||||||| ||||||||||| || || |||||||||||||||| || |||||||||||
Sbjct: 165 cacgcgacgttctacggcggccgcgacgggtccggcaccacggacggcggcgcgtgcggc 224
Query: 249 tacaagg 255
|||||||
Sbjct: 225 tacaagg 231
>gb|CL195141.1|CL195141 104_420_10942159_116_32306_028 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10942159, DNA
sequence
Length = 515
Score = 81.8 bits (41), Expect = 1e-013
Identities = 67/75 (89%), Gaps = 3/75 (4%)
Strand = Plus / Plus
Query: 59 gtcgctgctggtcgccgtgctagcggtggc---cgccggtgtcgccaacgccggccacgc 115
||||||||||||||||||||| |||||||| ||||| ||||||||| |||||| |||
Sbjct: 439 gtcgctgctggtcgccgtgctcgcggtggcggccgccgatgtcgccaatgccggcggcgc 498
Query: 116 caagcccctgacgcc 130
|||||||||||||||
Sbjct: 499 caagcccctgacgcc 513
>gb|BI075831.1|BI075831 IP1_21_G05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 646
Score = 71.9 bits (36), Expect = 1e-010
Identities = 138/172 (80%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgacctcagcatgcccgcgttcctcca 508
|||||| |||||||||||||||||| |||||||||| | | |||||| ||||||||
Sbjct: 461 cggcggctggtgcaacccgccgcggccgcacttcgacatggccgagcccgccttcctcca 520
Query: 509 gatcgcacaggagaaggccggcatcgtgcccatctcctaccgcagggtggcgtgcacgaa 568
||||| ||| | ||||||||||||||| || ||| | | || ||| ||||| |||
Sbjct: 521 catcgcgcagtaccgcgccggcatcgtgcccgtcgccttcaggagagtgccgtgcgtgaa 580
Query: 569 gcagggcggcatccggtacaccatcaccgggaacaagtacttcaacatggtg 620
| ||||||||||||||| |||||||| |||| || ||||||||| |||||
Sbjct: 581 gaagggcggcatccggttcaccatcaacgggcactcctacttcaacctggtg 632
>gb|CN144206.1|CN144206 WOUND1_20_G04.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_20_G04_A002 5', mRNA sequence
Length = 607
Score = 69.9 bits (35), Expect = 5e-010
Identities = 122/151 (80%)
Strand = Plus / Plus
Query: 444 gacagcggcgggtggtgcaacccgccgcgggagcacttcgacctcagcatgcccgcgttc 503
|||| |||||| |||||||||||||||||| |||||||||| | | |||||| |||
Sbjct: 457 gacaacggcggctggtgcaacccgccgcggccgcacttcgacatggccgagcccgccttc 516
Query: 504 ctccagatcgcacaggagaaggccggcatcgtgcccatctcctaccgcagggtggcgtgc 563
||||| ||||| ||| | ||||||||||||||| || ||| | | || ||| |||||
Sbjct: 517 ctccacatcgcgcagtaccgcgccggcatcgtgcccgtcgccttcaggagagtgccgtgc 576
Query: 564 acgaagcagggcggcatccggtacaccatca 594
|||| ||||||||||||||| ||||||||
Sbjct: 577 gtgaagaagggcggcatccggttcaccatca 607
>gb|CW079162.1|CW079162 104_398_10899280_114_32367_050 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10899280, DNA
sequence
Length = 685
Score = 67.9 bits (34), Expect = 2e-009
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 448 gcggcgggtggtgcaacccgccgcgggagcacttcgac 485
|||||||||||||||||||||||||| |||||||||||
Sbjct: 38 gcggcgggtggtgcaacccgccgcggcagcacttcgac 75
>gb|CW214676.1|CW214676 104_646_11194139_148_37052_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11194139, DNA
sequence
Length = 640
Score = 65.9 bits (33), Expect = 7e-009
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgac 485
||||||||||||||||||||||||| |||||||||||
Sbjct: 252 cggcgggtggtgcaacccgccgcggcagcacttcgac 288
>gb|CF429238.1|CF429238 PH1_20_C06.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_20_C06_A002 5', mRNA sequence
Length = 744
Score = 65.9 bits (33), Expect = 7e-009
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgac 485
||||||||||||||||||||||||| |||||||||||
Sbjct: 434 cggcgggtggtgcaacccgccgcggcagcacttcgac 470
>gb|CN124528.1|CN124528 RHOH1_5_H07.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_5_H07_A002 3', mRNA sequence
Length = 754
Score = 65.9 bits (33), Expect = 7e-009
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgac 485
||||||||||||||||||||||||| |||||||||||
Sbjct: 242 cggcgggtggtgcaacccgccgcggcagcacttcgac 278
>gb|CW220361.1|CW220361 104_655_11197308_116_37156_048 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11197308, DNA
sequence
Length = 617
Score = 63.9 bits (32), Expect = 3e-008
Identities = 101/124 (81%)
Strand = Plus / Plus
Query: 550 gcagggtggcgtgcacgaagcagggcggcatccggtacaccatcaccgggaacaagtact 609
|||||||||||||| |||||||| |||||||||| |||||||| ||| || ||||
Sbjct: 91 gcagggtggcgtgcgtcaagcagggtggcatccggttcaccatcaacggccactcctact 150
Query: 610 tcaacatggtgacgatcaccaacgtaggcggcgccggcgacatcgcggcggtgtcggtga 669
|| | ||||| ||||| ||||| |||||||| |||||| | |||||||||||||||
Sbjct: 151 tcgtcctggtgctcatcacaaacgtgggcggcgctggcgacttgacggcggtgtcggtga 210
Query: 670 aggg 673
||||
Sbjct: 211 aggg 214
>gb|CW220362.1|CW220362 104_655_11197308_148_37155_048 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11197308, DNA
sequence
Length = 621
Score = 63.9 bits (32), Expect = 3e-008
Identities = 101/124 (81%)
Strand = Plus / Minus
Query: 550 gcagggtggcgtgcacgaagcagggcggcatccggtacaccatcaccgggaacaagtact 609
|||||||||||||| |||||||| |||||||||| |||||||| ||| || ||||
Sbjct: 554 gcagggtggcgtgcgtcaagcagggtggcatccggttcaccatcaacggccactcctact 495
Query: 610 tcaacatggtgacgatcaccaacgtaggcggcgccggcgacatcgcggcggtgtcggtga 669
|| | ||||| ||||| ||||| |||||||| |||||| | |||||||||||||||
Sbjct: 494 tcgtcctggtgctcatcacaaacgtgggcggcgctggcgacttgacggcggtgtcggtga 435
Query: 670 aggg 673
||||
Sbjct: 434 aggg 431
>gb|CW481549.1|CW481549 fsbb001f241d06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f241d06, DNA
sequence
Length = 386
Score = 63.9 bits (32), Expect = 3e-008
Identities = 101/124 (81%)
Strand = Plus / Plus
Query: 550 gcagggtggcgtgcacgaagcagggcggcatccggtacaccatcaccgggaacaagtact 609
|||||||||||||| |||||||| |||||||||| |||||||| ||| || ||||
Sbjct: 88 gcagggtggcgtgcgtcaagcagggtggcatccggttcaccatcaacggccactcctact 147
Query: 610 tcaacatggtgacgatcaccaacgtaggcggcgccggcgacatcgcggcggtgtcggtga 669
|| | ||||| ||||| ||||| |||||||| |||||| | |||||||||||||||
Sbjct: 148 tcgtcctggtgctcatcacaaacgtgggcggcgctggcgacttgacggcggtgtcggtga 207
Query: 670 aggg 673
||||
Sbjct: 208 aggg 211
>gb|CD204043.1|CD204043 HS1_3_A10.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_3_A10_A012 5', mRNA sequence
Length = 632
Score = 61.9 bits (31), Expect = 1e-007
Identities = 120/147 (81%), Gaps = 2/147 (1%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgacctca-gcatgcccgcgttcctcc 507
|||||| ||||||||||||||||| |||||||||| | ||| ||| || |||||||
Sbjct: 438 cggcggctggtgcaacccgccgcgcccgcacttcgacatggcgca-gccggccttcctcc 496
Query: 508 agatcgcacaggagaaggccggcatcgtgcccatctcctaccgcagggtggcgtgcacga 567
||||||| ||| | ||||||||||||||| || ||||| | |||||| ||||| ||
Sbjct: 497 agatcgcgcagtaccgcgccggcatcgtgcccgtcgcctacaggagggtgccgtgcgtga 556
Query: 568 agcagggcggcatccggtacaccatca 594
|| ||||||| ||||||| ||||||||
Sbjct: 557 agaagggcgggatccggttcaccatca 583
Score = 40.1 bits (20), Expect = 0.42
Identities = 50/60 (83%)
Strand = Plus / Plus
Query: 295 tgagcacggtgctgttcggtgacggcgcggcctgcggcgggtgctacgaggtgcgctgcg 354
||||||||| ||||||| ||||||||||| ||||| ||||||||| |||||||||
Sbjct: 290 tgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagctgcgctgcg 349
>gb|CD231880.1|CD231880 SS1_30_D11.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_30_D11_A012 5', mRNA sequence
Length = 691
Score = 61.9 bits (31), Expect = 1e-007
Identities = 120/147 (81%), Gaps = 2/147 (1%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgacctca-gcatgcccgcgttcctcc 507
|||||| ||||||||||||||||| |||||||||| | ||| ||| || |||||||
Sbjct: 433 cggcggctggtgcaacccgccgcgcccgcacttcgacatggcgca-gccggccttcctcc 491
Query: 508 agatcgcacaggagaaggccggcatcgtgcccatctcctaccgcagggtggcgtgcacga 567
||||||| ||| | ||||||||||||||| || ||||| | |||||| ||||| ||
Sbjct: 492 agatcgcgcagtaccgcgccggcatcgtgcccgtcgcctacaggagggtgccgtgcgtga 551
Query: 568 agcagggcggcatccggtacaccatca 594
|| ||||||| ||||||| ||||||||
Sbjct: 552 agaagggcgggatccggttcaccatca 578
Score = 40.1 bits (20), Expect = 0.42
Identities = 50/60 (83%)
Strand = Plus / Plus
Query: 295 tgagcacggtgctgttcggtgacggcgcggcctgcggcgggtgctacgaggtgcgctgcg 354
||||||||| ||||||| ||||||||||| ||||| ||||||||| |||||||||
Sbjct: 285 tgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagctgcgctgcg 344
>gb|CN136232.1|CN136232 OX1_41_D05.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_41_D05_A002 5', mRNA sequence
Length = 840
Score = 61.9 bits (31), Expect = 1e-007
Identities = 120/147 (81%), Gaps = 2/147 (1%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgacctca-gcatgcccgcgttcctcc 507
|||||| ||||||||||||||||| |||||||||| | ||| ||| || |||||||
Sbjct: 429 cggcggctggtgcaacccgccgcgcccgcacttcgacatggcgca-gccggccttcctcc 487
Query: 508 agatcgcacaggagaaggccggcatcgtgcccatctcctaccgcagggtggcgtgcacga 567
||||||| ||| | ||||||||||||||| || ||||| | |||||| ||||| ||
Sbjct: 488 agatcgcgcagtaccgcgccggcatcgtgcccgtcgcctacaggagggtgccgtgcgtga 547
Query: 568 agcagggcggcatccggtacaccatca 594
|| ||||||| ||||||| ||||||||
Sbjct: 548 agaagggcgggatccggttcaccatca 574
Score = 40.1 bits (20), Expect = 0.42
Identities = 50/60 (83%)
Strand = Plus / Plus
Query: 295 tgagcacggtgctgttcggtgacggcgcggcctgcggcgggtgctacgaggtgcgctgcg 354
||||||||| ||||||| ||||||||||| ||||| ||||||||| |||||||||
Sbjct: 281 tgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagctgcgctgcg 340
>gb|CX607081.1|CX607081 ANR1_6_C12.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_6_C12_A002 5', mRNA sequence
Length = 705
Score = 61.9 bits (31), Expect = 1e-007
Identities = 120/147 (81%), Gaps = 2/147 (1%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgacctca-gcatgcccgcgttcctcc 507
|||||| ||||||||||||||||| |||||||||| | ||| ||| || |||||||
Sbjct: 416 cggcggctggtgcaacccgccgcgcccgcacttcgacatggcgca-gccggccttcctcc 474
Query: 508 agatcgcacaggagaaggccggcatcgtgcccatctcctaccgcagggtggcgtgcacga 567
||||||| ||| | ||||||||||||||| || ||||| | |||||| ||||| ||
Sbjct: 475 agatcgcgcagtaccgcgccggcatcgtgcccgtcgcctacaggagggtgccgtgcgtga 534
Query: 568 agcagggcggcatccggtacaccatca 594
|| ||||||| ||||||| ||||||||
Sbjct: 535 agaagggcgggatccggttcaccatca 561
Score = 40.1 bits (20), Expect = 0.42
Identities = 50/60 (83%)
Strand = Plus / Plus
Query: 295 tgagcacggtgctgttcggtgacggcgcggcctgcggcgggtgctacgaggtgcgctgcg 354
||||||||| ||||||| ||||||||||| ||||| ||||||||| |||||||||
Sbjct: 268 tgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagctgcgctgcg 327
>gb|DN551840.1|DN551840 pSPR-RT-A-H2_G06_S131 pSPR Sorghum propinquum cDNA, mRNA sequence
Length = 861
Score = 61.9 bits (31), Expect = 1e-007
Identities = 76/91 (83%)
Strand = Plus / Plus
Query: 417 tgcccgcccaacgaccagcagtccgcggacagcggcgggtggtgcaacccgccgcgggag 476
|||||||||||| || || | || ||||| |||||||||||||||||||||||| |
Sbjct: 473 tgcccgcccaactacgcgctgccctcggacgccggcgggtggtgcaacccgccgcgccac 532
Query: 477 cacttcgacctcagcatgcccgcgttcctcc 507
|||||||||||| |||||| || |||||||
Sbjct: 533 cacttcgacctctccatgccggccttcctcc 563
Score = 42.1 bits (21), Expect = 0.11
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 606 tacttcaacatggtgacgatcaccaacgtaggcggcgccggcgac 650
||||||||| ||||| |||| |||||| |||||||||||||||
Sbjct: 662 tacttcaacctggtgctcatcagcaacgtgggcggcgccggcgac 706
>gb|BI140900.1|BI140900 IP1_40_E08.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 622
Score = 60.0 bits (30), Expect = 5e-007
Identities = 162/206 (78%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgacctcagcatgcccgcgttcctcca 508
|||||| |||||||||||||| || ||||||||||||| ||||||| |||||||||
Sbjct: 274 cggcggctggtgcaacccgccacgcccgcacttcgacctcgccatgcccatgttcctcca 333
Query: 509 gatcgcacaggagaaggccggcatcgtgcccatctcctaccgcagggtggcgtgcacgaa 568
||||| || | ||||||||||| ||| ||||||||||| ||||| | ||| |||
Sbjct: 334 catcgccgagtaccgcgccggcatcgtccccgtctcctaccgccgggtgccatgccggaa 393
Query: 569 gcagggcggcatccggtacaccatcaccgggaacaagtacttcaacatggtgacgatcac 628
| |||||| | |||| |||||||| ||| | |||||||||| ||||| ||||||
Sbjct: 394 gtcaggcggcgtgcggttcaccatcaacggcttccggtacttcaacctggtgctgatcac 453
Query: 629 caacgtaggcggcgccggcgacatcg 654
||||| | |||||| || |||||||
Sbjct: 454 gaacgtggccggcgcgggtgacatcg 479
>gb|CF429993.1|CF429993 PH1_25_G07.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_25_G07_A002 5', mRNA sequence
Length = 823
Score = 60.0 bits (30), Expect = 5e-007
Identities = 162/206 (78%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgacctcagcatgcccgcgttcctcca 508
|||||| |||||||||||||| || ||||||||||||| ||||||| |||||||||
Sbjct: 482 cggcggctggtgcaacccgccacgcccgcacttcgacctcgccatgcccatgttcctcca 541
Query: 509 gatcgcacaggagaaggccggcatcgtgcccatctcctaccgcagggtggcgtgcacgaa 568
||||| || | ||||||||||| ||| ||||||||||| ||||| | ||| |||
Sbjct: 542 catcgccgagtaccgcgccggcatcgtccccgtctcctaccgccgggtgccatgccggaa 601
Query: 569 gcagggcggcatccggtacaccatcaccgggaacaagtacttcaacatggtgacgatcac 628
| |||||| | |||| |||||||| ||| | |||||||||| ||||| ||||||
Sbjct: 602 gtcaggcggcgtgcggttcaccatcaacggcttccggtacttcaacctggtgctgatcac 661
Query: 629 caacgtaggcggcgccggcgacatcg 654
||||| | |||||| || |||||||
Sbjct: 662 gaacgtggccggcgcgggtgacatcg 687
>gb|CF430353.1|CF430353 PH1_27_A08.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_27_A08_A002 5', mRNA sequence
Length = 787
Score = 60.0 bits (30), Expect = 5e-007
Identities = 119/146 (81%), Gaps = 2/146 (1%)
Strand = Plus / Plus
Query: 450 ggcgggtggtgcaacccgccgcgggagcacttcgacct-cagcatgcccgcgttcctcca 508
||||| ||||||||||||||||| |||||||||| | ||| ||| || ||||||||
Sbjct: 434 ggcggctggtgcaacccgccgcgcccgcacttcgacatggcgca-gccggccttcctcca 492
Query: 509 gatcgcacaggagaaggccggcatcgtgcccatctcctaccgcagggtggcgtgcacgaa 568
|||||| ||| | ||||||||||||||| || ||||| | |||||| ||||| |||
Sbjct: 493 gatcgcgcagtaccgcgccggcatcgtgcccgtcgcctacaggagggtgccgtgcgtgaa 552
Query: 569 gcagggcggcatccggtacaccatca 594
| ||||||| ||||||| ||||||||
Sbjct: 553 gaagggcgggatccggttcaccatca 578
Score = 40.1 bits (20), Expect = 0.42
Identities = 50/60 (83%)
Strand = Plus / Plus
Query: 295 tgagcacggtgctgttcggtgacggcgcggcctgcggcgggtgctacgaggtgcgctgcg 354
||||||||| ||||||| ||||||||||| ||||| ||||||||| |||||||||
Sbjct: 284 tgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagctgcgctgcg 343
>gb|CN136158.1|CN136158 OX1_41_D05.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_41_D05_A002 3', mRNA sequence
Length = 725
Score = 60.0 bits (30), Expect = 5e-007
Identities = 78/94 (82%)
Strand = Plus / Plus
Query: 501 ttcctccagatcgcacaggagaaggccggcatcgtgcccatctcctaccgcagggtggcg 560
|||||||||||||| ||| | ||||||||||||||| || ||||| | |||||| ||
Sbjct: 146 ttcctccagatcgcgcagtaccgcgccggcatcgtgcccgtcgcctacaggagggtgccg 205
Query: 561 tgcacgaagcagggcggcatccggtacaccatca 594
||| |||| ||||||| ||||||| ||||||||
Sbjct: 206 tgcgtgaagaagggcgggatccggttcaccatca 239
>gb|CL192764.1|CL192764 104_415_10940470_114_32264_081 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10940470, DNA
sequence
Length = 627
Score = 58.0 bits (29), Expect = 2e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 445 acagcggcgggtggtgcaacccgccgcgggagcacttcgac 485
|||||||||| |||||||||||||||||| ||||||||||
Sbjct: 316 acagcggcggctggtgcaacccgccgcggccgcacttcgac 356
>gb|CW448128.1|CW448128 fsbb001f181j14k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f181j14, DNA
sequence
Length = 508
Score = 58.0 bits (29), Expect = 2e-006
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgac 485
|||||| ||||||||||||||||||| ||||||||||
Sbjct: 281 cggcggctggtgcaacccgccgcgggcgcacttcgac 317
>gb|CN142714.1|CN142714 WOUND1_11_F01.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_11_F01_A002 5', mRNA sequence
Length = 665
Score = 58.0 bits (29), Expect = 2e-006
Identities = 89/109 (81%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgacctcagcatgcccgcgttcctcca 508
|||||| |||||||||||||| || ||||||||||||| ||||||| |||||||||
Sbjct: 474 cggcggctggtgcaacccgccacgcccgcacttcgacctcgccatgcccatgttcctcca 533
Query: 509 gatcgcacaggagaaggccggcatcgtgcccatctcctaccgcagggtg 557
||||| || | ||||||||||| ||| ||||||||||| |||||
Sbjct: 534 catcgccgagtaccgcgccggcatcgtccccgtctcctaccgccgggtg 582
>gb|CW030261.1|CW030261 104_258_10500149_114_30403 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10500149, DNA
sequence
Length = 688
Score = 54.0 bits (27), Expect = 3e-005
Identities = 84/103 (81%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgacctcagcatgcccgcgttcctcca 508
|||||| |||||||||||||| || ||||||||||||| ||||||| |||||||||
Sbjct: 289 cggcggctggtgcaacccgccacgcccgcacttcgacctcgccatgcccatgttcctcca 348
Query: 509 gatcgcacaggagaaggccggcatcgtgcccatctcctaccgc 551
||||| || | ||||||||||| ||| |||||||||||
Sbjct: 349 catcgccgagtaccgcgccggcatcgtccccgtctcctaccgc 391
>gb|CW072097.1|CW072097 104_325_10592073_114_30535 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10592073, DNA
sequence
Length = 684
Score = 54.0 bits (27), Expect = 3e-005
Identities = 84/103 (81%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgacctcagcatgcccgcgttcctcca 508
|||||| |||||||||||||| || ||||||||||||| ||||||| |||||||||
Sbjct: 40 cggcggctggtgcaacccgccacgcccgcacttcgacctcgccatgcccatgttcctcca 99
Query: 509 gatcgcacaggagaaggccggcatcgtgcccatctcctaccgc 551
||||| || | ||||||||||| ||| |||||||||||
Sbjct: 100 catcgccgagtaccgcgccggcatcgtccccgtctcctaccgc 142
>gb|CW135331.1|CW135331 104_519_11117788_148_34827_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11117788, DNA
sequence
Length = 426
Score = 52.0 bits (26), Expect = 1e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 624 atcaccaacgtaggcggcgccggcgacatcgcggcggtgtcggtgaaggg 673
||||| ||||| |||||||| |||||| | |||||||||||||||||||
Sbjct: 34 atcacaaacgtgggcggcgctggcgacttgacggcggtgtcggtgaaggg 83
>gb|BI245987.1|BI245987 IP1_66_C05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 548
Score = 52.0 bits (26), Expect = 1e-004
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgacctcagcatgcccgcgttcctcca 508
|||||| |||||||||||||| || ||||||||||||| ||||||| |||||||||
Sbjct: 454 cggcggctggtgcaacccgccacgcccgcacttcgacctcgccatgcccatgttcctcca 513
Query: 509 gatcgc 514
|||||
Sbjct: 514 catcgc 519
>gb|CX611078.1|CX611078 ANR1_22_B08.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_22_B08_A002 5', mRNA sequence
Length = 605
Score = 52.0 bits (26), Expect = 1e-004
Identities = 77/94 (81%)
Strand = Plus / Plus
Query: 501 ttcctccagatcgcacaggagaaggccggcatcgtgcccatctcctaccgcagggtggcg 560
|||||||||||||| ||| | ||||||||||||||| || ||||| | |||||| |
Sbjct: 353 ttcctccagatcgcgcagtaccgcgccggcatcgtgcccgtcgcctacaggagggtgcca 412
Query: 561 tgcacgaagcagggcggcatccggtacaccatca 594
||| |||| ||||||| ||||||| ||||||||
Sbjct: 413 tgcgtgaagaagggcgggatccggttcaccatca 446
>gb|CL177978.1|CL177978 104_385_10894229_116_31914_293 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10894229, DNA
sequence
Length = 704
Score = 50.1 bits (25), Expect = 4e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 550 gcagggtggcgtgcacgaagcagggcggcatccggtacaccatcaccgggaacaagtact 609
||||||| ||||||| ||| ||||||||||||||| ||| |||| ||| | ||||
Sbjct: 137 gcagggtcgcgtgcaacaagaagggcggcatccggttcacaatcaacggccattcctact 196
Query: 610 tcaacatggtgacgatcaccaacgtaggcggcgccggcgac 650
||||| ||||| | | |||||||| |||||||||||||||
Sbjct: 197 tcaacctggtgctggtgaccaacgtgggcggcgccggcgac 237
>gb|CW166190.1|CW166190 104_574_11152918_116_36483_081 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11152918, DNA
sequence
Length = 690
Score = 50.1 bits (25), Expect = 4e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgac 485
|||||| |||||||||||||||||| ||||||||||
Sbjct: 3 cggcggctggtgcaacccgccgcggaggcacttcgac 39
>gb|CW318660.1|CW318660 104_811_11474070_116_35879_031 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11474070, DNA
sequence
Length = 634
Score = 50.1 bits (25), Expect = 4e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgac 485
|||||| |||||||||||||||||| ||||||||||
Sbjct: 249 cggcggctggtgcaacccgccgcggccgcacttcgac 285
>gb|CW325048.1|CW325048 104_819_11477484_116_35915_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11477484, DNA
sequence
Length = 612
Score = 50.1 bits (25), Expect = 4e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 550 gcagggtggcgtgcacgaagcagggcggcatccggtacaccatcaccgggaacaagtact 609
||||||| ||||||| ||| ||||||||||||||| ||| |||| ||| | ||||
Sbjct: 44 gcagggtcgcgtgcaacaagaagggcggcatccggttcacaatcaacggccattcctact 103
Query: 610 tcaacatggtgacgatcaccaacgtaggcggcgccggcgac 650
||||| ||||| | | |||||||| |||||||||||||||
Sbjct: 104 tcaacctggtgctggtgaccaacgtgggcggcgccggcgac 144
>gb|CW416233.1|CW416233 fsbb001f116l03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f116l03, DNA
sequence
Length = 215
Score = 50.1 bits (25), Expect = 4e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 550 gcagggtggcgtgcacgaagcagggcggcatccggtacaccatcaccgggaacaagtact 609
||||||| ||||||| ||| ||||||||||||||| ||| |||| ||| | ||||
Sbjct: 106 gcagggtcgcgtgcaacaagaagggcggcatccggttcacaatcaacggccattcctact 165
Query: 610 tcaacatggtgacgatcaccaacgtaggcggcgccggcgac 650
||||| ||||| | | |||||||| |||||||||||||||
Sbjct: 166 tcaacctggtgctggtgaccaacgtgggcggcgccggcgac 206
>gb|CW426483.1|CW426483 fsbb001f137o10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f137o10, DNA
sequence
Length = 727
Score = 50.1 bits (25), Expect = 4e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 550 gcagggtggcgtgcacgaagcagggcggcatccggtacaccatcaccgggaacaagtact 609
||||||| ||||||| ||| ||||||||||||||| ||| |||| ||| | ||||
Sbjct: 31 gcagggtcgcgtgcaacaagaagggcggcatccggttcacaatcaacggccattcctact 90
Query: 610 tcaacatggtgacgatcaccaacgtaggcggcgccggcgac 650
||||| ||||| | | |||||||| |||||||||||||||
Sbjct: 91 tcaacctggtgctggtgaccaacgtgggcggcgccggcgac 131
>gb|AW564506.1|AW564506 LG1_295_D10.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 447
Score = 50.1 bits (25), Expect = 4e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgac 485
|||||| |||||||||||||||||| ||||||||||
Sbjct: 201 cggcggctggtgcaacccgccgcggccgcacttcgac 237
>gb|BE360794.1|BE360794 DG1_67_C05.b2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 492
Score = 50.1 bits (25), Expect = 4e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgac 485
|||||| |||||||||||||| ||| |||||||||||
Sbjct: 425 cggcggctggtgcaacccgccccggcagcacttcgac 461
>gb|BE917749.1|BE917749 OV1_6_F07.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 581
Score = 50.1 bits (25), Expect = 4e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgac 485
|||||| |||||||||||||||||| ||||||||||
Sbjct: 462 cggcggctggtgcaacccgccgcggccgcacttcgac 498
>gb|BG463957.1|BG463957 EM1_52_H10.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 508
Score = 50.1 bits (25), Expect = 4e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgac 485
|||||| |||||||||||||||||| ||||||||||
Sbjct: 453 cggcggctggtgcaacccgccgcggccgcacttcgac 489
>gb|BG556631.1|BG556631 EM1_37_F06.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 448
Score = 50.1 bits (25), Expect = 4e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 524 ggccggcatcgtgcccatctcctaccgcagggtggcgtgca 564
||||||||| || ||| |||||||||||||||| |||||||
Sbjct: 397 ggccggcattgtccccgtctcctaccgcagggtcgcgtgca 437
>gb|CN151326.1|CN151326 WOUND1_74_G01.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_74_G01_A002 5', mRNA sequence
Length = 813
Score = 50.1 bits (25), Expect = 4e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgac 485
|||||| |||||||||||||||||| ||||||||||
Sbjct: 452 cggcggctggtgcaacccgccgcggccgcacttcgac 488
>gb|CW179633.1|CW179633 104_593_11160203_116_36623_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11160203, DNA
sequence
Length = 689
Score = 48.1 bits (24), Expect = 0.002
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 417 tgcccgcccaacgaccagcagtccgcggacagcggcgggtggtgcaacccgccgcg 472
|||||||||||| || || | || ||||| ||||||||||||||||||||||||
Sbjct: 626 tgcccgcccaactacgggctgccctcggacgccggcgggtggtgcaacccgccgcg 681
>gb|CW246309.1|CW246309 104_707_11221289_116_35084_077 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221289, DNA
sequence
Length = 616
Score = 48.1 bits (24), Expect = 0.002
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgacctc 488
|||||||||||||||||||||||| ||||||||||||
Sbjct: 258 cggcgggtggtgcaacccgccgcgcacccacttcgacctc 297
Score = 46.1 bits (23), Expect = 0.007
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 398 ggtgacggcgaccgacctgtgcccgcccaac 428
||||||||| ||| |||||||||||||||||
Sbjct: 207 ggtgacggccaccaacctgtgcccgcccaac 237
>gb|CW260111.1|CW260111 104_726_11228790_116_35191_019 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11228790, DNA
sequence
Length = 615
Score = 48.1 bits (24), Expect = 0.002
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 295 tgagcacggtgctgttcggtgacggcgcggcctgcggcgggtgctacgaggt 346
||||||||| |||||||| ||||||||| |||||||| |||||||||||
Sbjct: 482 tgagcacggcgctgttcgagcgcggcgcggcgtgcggcggctgctacgaggt 533
>gb|CW260112.1|CW260112 104_726_11228790_148_35187_019 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11228790, DNA
sequence
Length = 687
Score = 48.1 bits (24), Expect = 0.002
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 295 tgagcacggtgctgttcggtgacggcgcggcctgcggcgggtgctacgaggt 346
||||||||| |||||||| ||||||||| |||||||| |||||||||||
Sbjct: 439 tgagcacggcgctgttcgagcgcggcgcggcgtgcggcggctgctacgaggt 388
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 351,543
Number of Sequences: 832831
Number of extensions: 351543
Number of successful extensions: 99866
Number of sequences better than 0.5: 136
Number of HSP's better than 0.5 without gapping: 131
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 99455
Number of HSP's gapped (non-prelim): 400
length of query: 1086
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1066
effective length of database: 474,703,049
effective search space: 506033450234
effective search space used: 506033450234
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)