BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115079.2.1
(636 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG948221.1|BG948221 IP1_10_G11.g1_A002 Immature pannicle... 876 0.0
gb|CF488155.1|CF488155 POL1_48_C12.b1_A002 Pollen Sorghum b... 868 0.0
gb|BI212103.1|BI212103 IP1_61_G05.g1_A002 Immature pannicle... 850 0.0
gb|BG948159.1|BG948159 IP1_10_B04.g1_A002 Immature pannicle... 842 0.0
gb|BG948234.1|BG948234 IP1_10_H12.g1_A002 Immature pannicle... 835 0.0
gb|BI097996.1|BI097996 IP1_30_G05.g1_A002 Immature pannicle... 787 0.0
gb|BI098055.1|BI098055 IP1_31_E02.g1_A002 Immature pannicle... 753 0.0
gb|BI098054.1|BI098054 IP1_31_E01.g1_A002 Immature pannicle... 747 0.0
gb|BI212107.1|BI212107 IP1_61_H05.g1_A002 Immature pannicle... 731 0.0
gb|CW045536.1|CW045536 104_282_10509632_115_30224 Sorghum m... 696 0.0
gb|BG947717.1|BG947717 IP1_8_C05.g1_A002 Immature pannicle ... 644 0.0
gb|BG947632.1|BG947632 IP1_7_B01.g1_A002 Immature pannicle ... 617 e-175
gb|BI212108.1|BI212108 IP1_61_H06.g1_A002 Immature pannicle... 611 e-173
gb|BG947659.1|BG947659 IP1_7_E03.g1_A002 Immature pannicle ... 605 e-171
gb|BI211720.1|BI211720 IP1_27_B01.g1_A002 Immature pannicle... 446 e-123
gb|BI075556.1|BI075556 IP1_22_A08.g1_A002 Immature pannicle... 371 e-101
gb|CW142569.1|CW142569 104_534_11136932_148_34945_080 Sorgh... 42 0.061
gb|CW194396.1|CW194396 104_617_11180079_116_36785_054 Sorgh... 42 0.061
gb|CW256119.1|CW256119 104_721_11226611_116_35140_048 Sorgh... 42 0.061
gb|CW264025.1|CW264025 104_732_11231049_116_35239_037 Sorgh... 42 0.061
gb|CW408872.1|CW408872 fsbb001f102p04k0 Sorghum methylation... 42 0.061
gb|CW501434.1|CW501434 fsbb001f297d24k0 Sorghum methylation... 42 0.061
>gb|BG948221.1|BG948221 IP1_10_G11.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 734
Score = 876 bits (442), Expect = 0.0
Identities = 586/633 (92%), Gaps = 17/633 (2%)
Strand = Plus / Minus
Query: 12 catacaagcagtattaaagtattcctgcaatcattgcatagtacagtggaacaacactac 71
||||||| ||||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct: 683 catacaatcagtattgaagtaatcctgcaatcagtgcatagtacagtggaacaa------ 630
Query: 72 aacaggctgtatagtgccttatttgtacaatgtctaggaagcaaactcaagtaccttaca 131
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 629 --caggctgtatagtgccttatttctacaatgtctaggaagcaaactcaagtaccttaca 572
Query: 132 ctgtttgatagatgaagaacacaaatacagtaaaatattagcgatgtgctatgtggtgct 191
|||||||||||| ||| ||| |||||||||||||| ||||||||| |||||||||||
Sbjct: 571 ctgtttgataga-gaaacacataaatacagtaaaatgctagcgatgtactatgtggtgca 513
Query: 192 cagcttccaccgagacatctatgctctttatgtgatgtttctgt--atatataattaatc 249
||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 512 cagctgccaccaagacatctatgctctttatgcgatgtttctgtgtatatataattaatc 453
Query: 250 tttatgcttgccatgta------cccaccattatattagcttgtgaaggttttctttaca 303
|| |||||||||||||| ||| ||||||||||||||||||||||||||||| ||
Sbjct: 452 ttcatgcttgccatgtaaattttccctccattatattagcttgtgaaggttttcttaacc 393
Query: 304 cctcgaactagcagtccttcaaaggtgatgcctgggccaaaagccaagatcaatccccac 363
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 cctcggactagcagtccttcaaaggtgatgcctgggccaaaagccaagatcaatccccac 333
Query: 364 tcttcacttattgcccctttctttaactcgtccctcaagtactccagcacatagaagatt 423
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 332 tcttcgcttattgcccctttctttagctcgtccctcaagtactccagcacatagaagatt 273
Query: 424 gtattgctgctcacatttccatagttcattaaggcttttctgctaatcttgagcttctct 483
|||||||||||||| || ||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 272 gtattgctgctcacgttcccatagttcttcaaggcttttctgctaatcttgagcttctct 213
Query: 484 ggctgaagtttaaggcagaactcaagcctgttcaatattgctggtccaccaggatgcaca 543
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 212 ggctgaagttcaaggcagaactcaagcctgttcaatattgctggtcctccaggatgcaca 153
Query: 544 gcccaaaatatatcgttgaaatcctttatccctacctggttcatgagagtcctgcagaaa 603
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 gcccaaaatacatcattgaaatcctttatccctacctggttcatgagagtcctgcagaaa 93
Query: 604 ccttctatgcggctttcaatcttctcaggcaaa 636
|||||||||||||||||||||||||||||||||
Sbjct: 92 ccttctatgcggctttcaatcttctcaggcaaa 60
>gb|CF488155.1|CF488155 POL1_48_C12.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_48_C12_A002 3', mRNA sequence
Length = 699
Score = 868 bits (438), Expect = 0.0
Identities = 579/625 (92%), Gaps = 17/625 (2%)
Strand = Plus / Minus
Query: 20 cagtattaaagtattcctgcaatcattgcatagtacagtggaacaacactacaacaggct 79
||||||| ||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct: 695 cagtattgaagtaatcctgcaatcagtgcatagtacagtggaacaa--------caggct 644
Query: 80 gtatagtgccttatttgtacaatgtctaggaagcaaactcaagtaccttacactgtttga 139
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 gtatagtgccttatttctacaatgtctaggaagcaaactcaagtaccttacactgtttga 584
Query: 140 tagatgaagaacacaaatacagtaaaatattagcgatgtgctatgtggtgctcagcttcc 199
|||| ||| ||| |||||||||||||| ||||||||| ||||||||||| ||||| ||
Sbjct: 583 taga-gaaacacataaatacagtaaaatgctagcgatgtactatgtggtgcacagctgcc 525
Query: 200 accgagacatctatgctctttatgtgatgtttctgt--atatataattaatctttatgct 257
||| |||||||||||||||||||| ||||||||||| |||||||||||||||| |||||
Sbjct: 524 accaagacatctatgctctttatgcgatgtttctgtgtatatataattaatcttcatgct 465
Query: 258 tgccatgta------cccaccattatattagcttgtgaaggttttctttacacctcgaac 311
||||||||| ||| ||||||||||||||||||||||||||||| || ||||| ||
Sbjct: 464 tgccatgtaaattttccctccattatattagcttgtgaaggttttcttaacccctcggac 405
Query: 312 tagcagtccttcaaaggtgatgcctgggccaaaagccaagatcaatccccactcttcact 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 404 tagcagtccttcaaaggtgatgcctgggccaaaagccaagatcaatccccactcttcgct 345
Query: 372 tattgcccctttctttaactcgtccctcaagtactccagcacatagaagattgtattgct 431
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tattgcccctttctttagctcgtccctcaagtactccagcacatagaagattgtattgct 285
Query: 432 gctcacatttccatagttcattaaggcttttctgctaatcttgagcttctctggctgaag 491
|||||| || ||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 284 gctcacgttcccatagttcttcaaggcttttctgctaatcttgagcttctctggctgaag 225
Query: 492 tttaaggcagaactcaagcctgttcaatattgctggtccaccaggatgcacagcccaaaa 551
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 224 ttcaaggcagaactcaagcctgttcaatattgctggtcctccaggatgcacagcccaaaa 165
Query: 552 tatatcgttgaaatcctttatccctacctggttcatgagagtcctgcagaaaccttctat 611
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 tacatcattgaaatcctttatccctacctggttcatgagagtcctgcagaaaccttctat 105
Query: 612 gcggctttcaatcttctcaggcaaa 636
|||||||||||||||||||||||||
Sbjct: 104 gcggctttcaatcttctcaggcaaa 80
>gb|BI212103.1|BI212103 IP1_61_G05.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 660
Score = 850 bits (429), Expect = 0.0
Identities = 540/575 (93%), Gaps = 9/575 (1%)
Strand = Plus / Minus
Query: 70 acaacaggctgtatagtgccttatttgtacaatgtctaggaagcaaactcaagtacctta 129
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 637 acaacaggctgtatagtgccttatttctacaatgtctaggaagcaaactcaagtacctta 578
Query: 130 cactgtttgatagatgaagaacacaaatacagtaaaatattagcgatgtgctatgtggtg 189
|||||||||||||| ||| ||| |||||||||||||| ||||||||| ||||||||||
Sbjct: 577 cactgtttgataga-gaaacacataaatacagtaaaatgctagcgatgtactatgtggtg 519
Query: 190 ctcagcttccaccgagacatctatgctctttatgtgatgtttctgt--atatataattaa 247
| ||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 518 cacagctgccaccaagacatctatgctctttatgcgatgtttctgtgtatatataattaa 459
Query: 248 tctttatgcttgccatgta------cccaccattatattagcttgtgaaggttttcttta 301
|||| |||||||||||||| ||| ||||||||||||||||||||||||||||| |
Sbjct: 458 tcttcatgcttgccatgtaaattttccctccattatattagcttgtgaaggttttcttaa 399
Query: 302 cacctcgaactagcagtccttcaaaggtgatgcctgggccaaaagccaagatcaatcccc 361
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 cccctcggactagcagtccttcaaaggtgatgcctgggccaaaagccaagatcaatcccc 339
Query: 362 actcttcacttattgcccctttctttaactcgtccctcaagtactccagcacatagaaga 421
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 338 actcttcgcttattgcccctttctttagctcgtccctcaagtactccagcacatagaaga 279
Query: 422 ttgtattgctgctcacatttccatagttcattaaggcttttctgctaatcttgagcttct 481
|||||||||||||||| || ||||||||| | ||||||||||||||||||||||||||||
Sbjct: 278 ttgtattgctgctcacgttcccatagttcttcaaggcttttctgctaatcttgagcttct 219
Query: 482 ctggctgaagtttaaggcagaactcaagcctgttcaatattgctggtccaccaggatgca 541
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 218 ctggctgaagttcaaggcagaactcaagcctgttcaatattgctggtcctccaggatgca 159
Query: 542 cagcccaaaatatatcgttgaaatcctttatccctacctggttcatgagagtcctgcaga 601
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 cagcccaaaatacatcattgaaatcctttatccctacctggttcatgagagtcctgcaga 99
Query: 602 aaccttctatgcggctttcaatcttctcaggcaaa 636
|||||||||||||||||||||||||||||||||||
Sbjct: 98 aaccttctatgcggctttcaatcttctcaggcaaa 64
>gb|BG948159.1|BG948159 IP1_10_B04.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 588
Score = 842 bits (425), Expect = 0.0
Identities = 539/575 (93%), Gaps = 9/575 (1%)
Strand = Plus / Minus
Query: 70 acaacaggctgtatagtgccttatttgtacaatgtctaggaagcaaactcaagtacctta 129
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 585 acaacaggctgtatagtgccttatttctacaatgtctaggaagcaaactcaagtacctta 526
Query: 130 cactgtttgatagatgaagaacacaaatacagtaaaatattagcgatgtgctatgtggtg 189
|||||||||||||| ||| ||| |||||||||||||| ||||||||| ||||||||||
Sbjct: 525 cactgtttgataga-gaaacacataaatacagtaaaatgctagcgatgtactatgtggtg 467
Query: 190 ctcagcttccaccgagacatctatgctctttatgtgatgtttctgt--atatataattaa 247
| ||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 466 cacagctgccaccaagacatctatgctctttatgcgatgtttctgtgtatatataattaa 407
Query: 248 tctttatgcttgccatgta------cccaccattatattagcttgtgaaggttttcttta 301
|||| |||||||||||||| ||| ||||||||||||||||||||||||||||| |
Sbjct: 406 tcttcatgcttgccatgtaaattttccctccattatattagcttgtgaaggttttcttaa 347
Query: 302 cacctcgaactagcagtccttcaaaggtgatgcctgggccaaaagccaagatcaatcccc 361
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 cccctcggactagcagtccttcaaaggtgatgcctgggccaaaagccaagatcaatcccc 287
Query: 362 actcttcacttattgcccctttctttaactcgtccctcaagtactccagcacatagaaga 421
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 286 actcttcgcttattgcccctttctttagctcgtccctcaagtactccagcacatagaaga 227
Query: 422 ttgtattgctgctcacatttccatagttcattaaggcttttctgctaatcttgagcttct 481
|||||||||||||||| || ||||||||| | ||||||||||||||||||||||||||||
Sbjct: 226 ttgtattgctgctcacgttcccatagttcttcaaggcttttctgctaatcttgagcttct 167
Query: 482 ctggctgaagtttaaggcagaactcaagcctgttcaatattgctggtccaccaggatgca 541
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 166 ctggctgaagttcaaggcagaactcaagcctgttcaatattgctggtcctccaggatgca 107
Query: 542 cagcccaaaatatatcgttgaaatcctttatccctacctggttcatgagagtcctgcaga 601
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 cagcccaaaatacatcattgaaatcctttatccctacctggttcatgagagtcctgcaga 47
Query: 602 aaccttctatgcggctttcaatcttctcaggcaaa 636
||||||||||||||||||||||||||||||||||
Sbjct: 46 gaccttctatgcggctttcaatcttctcaggcaaa 12
>gb|BG948234.1|BG948234 IP1_10_H12.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 720
Score = 835 bits (421), Expect = 0.0
Identities = 539/575 (93%), Gaps = 10/575 (1%)
Strand = Plus / Minus
Query: 70 acaacaggctgtatagtgccttatttgtacaatgtctaggaagcaaactcaagtacctta 129
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 717 acaacaggctgtatagtgccttatttct-caatgtctaggaagcaaactcaagtacctta 659
Query: 130 cactgtttgatagatgaagaacacaaatacagtaaaatattagcgatgtgctatgtggtg 189
|||||||||||||| ||| ||| |||||||||||||| ||||||||| ||||||||||
Sbjct: 658 cactgtttgataga-gaaacacataaatacagtaaaatgctagcgatgtactatgtggtg 600
Query: 190 ctcagcttccaccgagacatctatgctctttatgtgatgtttctgt--atatataattaa 247
| ||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 599 cacagctgccaccaagacatctatgctctttatgcgatgtttctgtgtatatataattaa 540
Query: 248 tctttatgcttgccatgta------cccaccattatattagcttgtgaaggttttcttta 301
|||| |||||||||||||| ||| ||||||||||||||||||||||||||||| |
Sbjct: 539 tcttcatgcttgccatgtaaattttccctccattatattagcttgtgaaggttttcttaa 480
Query: 302 cacctcgaactagcagtccttcaaaggtgatgcctgggccaaaagccaagatcaatcccc 361
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 cccctcggactagcagtccttcaaaggtgatgcctgggccaaaagccaagatcaatcccc 420
Query: 362 actcttcacttattgcccctttctttaactcgtccctcaagtactccagcacatagaaga 421
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 419 actcttcgcttattgcccctttctttagctcgtccctcaagtactccagcacatagaaga 360
Query: 422 ttgtattgctgctcacatttccatagttcattaaggcttttctgctaatcttgagcttct 481
|||||||||||||||| || ||||||||| | ||||||||||||||||||||||||||||
Sbjct: 359 ttgtattgctgctcacgttcccatagttcttcaaggcttttctgctaatcttgagcttct 300
Query: 482 ctggctgaagtttaaggcagaactcaagcctgttcaatattgctggtccaccaggatgca 541
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 299 ctggctgaagttcaaggcagaactcaagcctgttcaatattgctggtcctccaggatgca 240
Query: 542 cagcccaaaatatatcgttgaaatcctttatccctacctggttcatgagagtcctgcaga 601
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 cagcccaaaatacatcattgaaatcctttatccctacctggttcatgagagtcctgcaga 180
Query: 602 aaccttctatgcggctttcaatcttctcaggcaaa 636
|||||||||||||||||||||||||||||||||||
Sbjct: 179 aaccttctatgcggctttcaatcttctcaggcaaa 145
>gb|BI097996.1|BI097996 IP1_30_G05.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 663
Score = 787 bits (397), Expect = 0.0
Identities = 541/588 (92%), Gaps = 17/588 (2%)
Strand = Plus / Minus
Query: 12 catacaagcagtattaaagtattcctgcaatcattgcatagtacagtggaacaacactac 71
||||||| ||||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct: 579 catacaatcagtattgaagtaatcctgcaatcagtgcatagtacagtggaacaa------ 526
Query: 72 aacaggctgtatagtgccttatttgtacaatgtctaggaagcaaactcaagtaccttaca 131
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 525 --caggctgtatagtgccttatttctacaatgtctaggaagcaaactcaagtaccttaca 468
Query: 132 ctgtttgatagatgaagaacacaaatacagtaaaatattagcgatgtgctatgtggtgct 191
|||||||||||| ||| ||| |||||||||||||| ||||||||| |||||||||||
Sbjct: 467 ctgtttgataga-gaaacacataaatacagtaaaatgctagcgatgtactatgtggtgca 409
Query: 192 cagcttccaccgagacatctatgctctttatgtgatgtttctgt--atatataattaatc 249
||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 408 cagctgccaccaagacatctatgctctttatgcgatgtttctgtgtatatataattaatc 349
Query: 250 tttatgcttgccatgta------cccaccattatattagcttgtgaaggttttctttaca 303
|| |||||||||||||| ||| ||||||||||||||||||||||||||||| ||
Sbjct: 348 ttcatgcttgccatgtaaattttccctccattatattagcttgtgaaggttttcttaacc 289
Query: 304 cctcgaactagcagtccttcaaaggtgatgcctgggccaaaagccaagatcaatccccac 363
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 cctcggactagcagtccttcaaaggtgatgcctgggccaaaagccaagatcaatccccac 229
Query: 364 tcttcacttattgcccctttctttaactcgtccctcaagtactccagcacatagaagatt 423
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 228 tcttcgcttattgcccctttctttagctcgtccctcaagtactccagcacatagaagatt 169
Query: 424 gtattgctgctcacatttccatagttcattaaggcttttctgctaatcttgagcttctct 483
|||||||||||||| || ||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 168 gtattgctgctcacgttcccatagttcttcaaggcttttctgctaatcttgagcttctct 109
Query: 484 ggctgaagtttaaggcagaactcaagcctgttcaatattgctggtccaccaggatgcaca 543
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 108 ggctgaagttcaaggcagaactcaagcctgttcaatattgctggtcctccaggatgcaca 49
Query: 544 gcccaaaatatatcgttgaaatcctttatccctacctggttcatgaga 591
|||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 48 gcccaaaatacatcattgaaatcctttatccctacctggttcatgaga 1
>gb|BI098055.1|BI098055 IP1_31_E02.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 555
Score = 753 bits (380), Expect = 0.0
Identities = 518/563 (92%), Gaps = 17/563 (3%)
Strand = Plus / Minus
Query: 28 aagtattcctgcaatcattgcatagtacagtggaacaacactacaacaggctgtatagtg 87
||||| ||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 554 aagtaatcctgcaatcagtgcatagtacagtggaacaa--------caggctgtatagtg 503
Query: 88 ccttatttgtacaatgtctaggaagcaaactcaagtaccttacactgtttgatagatgaa 147
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 502 ccttatttctacaatgtctaggaagcaaactcaagtaccttacactgtttgataga-gaa 444
Query: 148 gaacacaaatacagtaaaatattagcgatgtgctatgtggtgctcagcttccaccgagac 207
||| |||||||||||||| ||||||||| ||||||||||| ||||| ||||| ||||
Sbjct: 443 acacataaatacagtaaaatgctagcgatgtactatgtggtgcacagctgccaccaagac 384
Query: 208 atctatgctctttatgtgatgtttctgt--atatataattaatctttatgcttgccatgt 265
|||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 383 atctatgctctttatgcgatgtttctgtgtatatataattaatcttcatgcttgccatgt 324
Query: 266 a------cccaccattatattagcttgtgaaggttttctttacacctcgaactagcagtc 319
| ||| ||||||||||||||||||||||||||||| || ||||| ||||||||||
Sbjct: 323 aaattttccctccattatattagcttgtgaaggttttcttaacccctcggactagcagtc 264
Query: 320 cttcaaaggtgatgcctgggccaaaagccaagatcaatccccactcttcacttattgccc 379
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 263 cttcaaaggtgatgcctgggccaaaagccaagatcaatccccactcttcgcttattgccc 204
Query: 380 ctttctttaactcgtccctcaagtactccagcacatagaagattgtattgctgctcacat 439
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 203 ctttctttagctcgtccctcaagtactccagcacatagaagattgtattgctgctcacgt 144
Query: 440 ttccatagttcattaaggcttttctgctaatcttgagcttctctggctgaagtttaaggc 499
| ||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 143 tcccatagttcttcaaggcttttctgctaatcttgagcttctctggctgaagttcaaggc 84
Query: 500 agaactcaagcctgttcaatattgctggtccaccaggatgcacagcccaaaatatatcgt 559
||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
Sbjct: 83 agaactcaagcctgttcaatattgctggtcctccaggatgcacagcccaaaatacatcat 24
Query: 560 tgaaatcctttatccctacctgg 582
|||||||||||||||||||||||
Sbjct: 23 tgaaatcctttatccctacctgg 1
>gb|BI098054.1|BI098054 IP1_31_E01.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 556
Score = 747 bits (377), Expect = 0.0
Identities = 517/563 (91%), Gaps = 17/563 (3%)
Strand = Plus / Minus
Query: 28 aagtattcctgcaatcattgcatagtacagtggaacaacactacaacaggctgtatagtg 87
||||| ||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 555 aagtaatcctgcaatcagtgcatagtacagtggaacaa--------caggctgtatagtg 504
Query: 88 ccttatttgtacaatgtctaggaagcaaactcaagtaccttacactgtttgatagatgaa 147
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 503 ccttatttctacaatgtctaggaagcaaactcaagtaccttacactgtttgataga-gaa 445
Query: 148 gaacacaaatacagtaaaatattagcgatgtgctatgtggtgctcagcttccaccgagac 207
||| |||||||||||||| ||||||||| ||||||||||| ||||| ||||| ||||
Sbjct: 444 acacataaatacagtaaaatgctagcgatgtactatgtggtgcacagctgccaccaagac 385
Query: 208 atctatgctctttatgtgatgtttctgt--atatataattaatctttatgcttgccatgt 265
|||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 384 atctatgctctttatgcgatgtttctgtgtatatataattaatcttcatgcttgccatgt 325
Query: 266 a------cccaccattatattagcttgtgaaggttttctttacacctcgaactagcagtc 319
| ||| ||||||||||||||||||||||||||||| || ||||| ||||||||||
Sbjct: 324 aaattttccctccattatattagcttgtgaaggttttcttaacccctcggactagcagtc 265
Query: 320 cttcaaaggtgatgcctgggccaaaagccaagatcaatccccactcttcacttattgccc 379
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 264 cttcaaaggtgatgcctgggccaaaagccaagatcaatccccactcttcgcttattgccc 205
Query: 380 ctttctttaactcgtccctcaagtactccagcacatagaagattgtattgctgctcacat 439
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 204 ctttctttagctcgtccctcaagtactccagcacatagaagattgtattgctgctcacgt 145
Query: 440 ttccatagttcattaaggcttttctgctaatcttgagcttctctggctgaagtttaaggc 499
| ||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 144 tcccatagttcttcaaggcttttctgctaatcttgagcttctctggctgaagttcaaggc 85
Query: 500 agaactcaagcctgttcaatattgctggtccaccaggatgcacagcccaaaatatatcgt 559
||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||| |
Sbjct: 84 agaactcaagcctgttcaatattgctggtcctccaggatgcacagcccanaatacatcat 25
Query: 560 tgaaatcctttatccctacctgg 582
|||||||||||||||||||||||
Sbjct: 24 tgaaatcctttatccctacctgg 2
>gb|BI212107.1|BI212107 IP1_61_H05.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 544
Score = 731 bits (369), Expect = 0.0
Identities = 507/552 (91%), Gaps = 17/552 (3%)
Strand = Plus / Minus
Query: 28 aagtattcctgcaatcattgcatagtacagtggaacaacactacaacaggctgtatagtg 87
||||| ||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 543 aagtaatcctgcaatcagtgcatagtacagtggaacaa--------caggctgtatagtg 492
Query: 88 ccttatttgtacaatgtctaggaagcaaactcaagtaccttacactgtttgatagatgaa 147
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 491 ccttatttctacaatgtctaggaagcaaactcaagtaccttacactgtttgataga-gaa 433
Query: 148 gaacacaaatacagtaaaatattagcgatgtgctatgtggtgctcagcttccaccgagac 207
||| |||||||||||||| ||||||||| ||||||||||| ||||| ||||| ||||
Sbjct: 432 acacataaatacagtaaaatgctagcgatgtactatgtggtgcacagctgccaccaagac 373
Query: 208 atctatgctctttatgtgatgtttctgt--atatataattaatctttatgcttgccatgt 265
|||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 372 atctatgctctttatgcgatgtttctgtgtatatataattaatcttcatgcttgccatgt 313
Query: 266 a------cccaccattatattagcttgtgaaggttttctttacacctcgaactagcagtc 319
| ||| ||||||||||||||||||||||||||||| || ||||| ||||||||||
Sbjct: 312 aaattttccctccattatattagcttgtgaaggttttcttaacccctcggactagcagtc 253
Query: 320 cttcaaaggtgatgcctgggccaaaagccaagatcaatccccactcttcacttattgccc 379
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 252 cttcaaaggtgatgcctgggccaaaagccaagatcaatccccactcttcgcttattgccc 193
Query: 380 ctttctttaactcgtccctcaagtactccagcacatagaagattgtattgctgctcacat 439
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 192 ctttctttagctcgtccctcaagtactccagcacatagaagattgtattgctgctcacgt 133
Query: 440 ttccatagttcattaaggcttttctgctaatcttgagcttctctggctgaagtttaaggc 499
| ||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 132 tcccatagttcttcaaggcttttctgctaatcttgagcttctctggctgaagttcaaggc 73
Query: 500 agaactcaagcctgttcaatattgctggtccaccaggatgcacagcccaaaatatatcgt 559
||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
Sbjct: 72 agaactcaagcctgttcaatattgctggtcctccaggatgcacagcccaaaatacatcat 13
Query: 560 tgaaatccttta 571
||||||||||||
Sbjct: 12 tgaaatccttta 1
>gb|CW045536.1|CW045536 104_282_10509632_115_30224 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10509632, DNA
sequence
Length = 592
Score = 696 bits (351), Expect = 0.0
Identities = 512/562 (91%), Gaps = 19/562 (3%)
Strand = Plus / Plus
Query: 12 catacaagcagtattaaagtattcctgcaatcattgcatagtacagtggaacaacactac 71
||||||| ||||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct: 41 catacaatcagtattgaagtaatcctgcaatcagtgcatagtacagtggaacaa------ 94
Query: 72 aacaggctgtatagtgccttatttgtacaatgtctaggaagcaaactcaagtaccttaca 131
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 95 --caggctgtatagtgccttatttctacaatgtctaggaagcaaactcaagtaccttaca 152
Query: 132 ctgtttgatagatgaagaacacaaatacagtaaaatattagcgatgtgctatgtggtgct 191
|||||||||||| ||| ||| |||||||||||||| ||||||||| |||||||||||
Sbjct: 153 ctgtttgataga-gaaacacataaatacagtaaaatgctagcgatgtactatgtggtgca 211
Query: 192 cagcttccaccgagacatctatgctctttatgtgatgtttctgt--atatataattaatc 249
||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 212 cagctgccaccaagacatctatgctctttatgcgatgtttctgtgtatatataattaatc 271
Query: 250 tttatgcttgccatgta------cccaccattatattagcttgtgaaggttttctttaca 303
|| |||||||||||||| ||| ||||||||||||||||||||||||||||| ||
Sbjct: 272 ttcatgcttgccatgtaaattttccctccattatattagcttgtgaaggttttcttaacc 331
Query: 304 cctcgaactagcagtccttcaaaggtgatgcctgggccaaaagccaagatcaatccccac 363
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 cctcggactagcagtccttcaaaggtgatgcctgggccaaaagccaagatcaatccccac 391
Query: 364 tcttcacttattgcccctttctttaactcgtccctcaagtactccagcacatagaagatt 423
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 392 tcttcgcttattgcccctttctttagctcgtccctcaagtactccagcacatagaagatt 451
Query: 424 gtattgctgctcacatttccatagttcattaaggcttttctgctaatcttgagcttctct 483
|||||||||||||| || ||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 452 gtattgctgctcacgttcccatagttcttcaaggcttttctgctaatcttgagcttctct 511
Query: 484 ggctgaagtttaaggcagaactcaagcctgttcaatattgct-ggtccaccaggatgcac 542
|||||||||| || |||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 512 ggctgaagttcaaagcagaactcaagcctgttcaatattgctgggtcctccaggatgcac 571
Query: 543 agcccaaaatatatcgttgaaa 564
|| |||||||| ||| ||||||
Sbjct: 572 ag-ccaaaatacatcattgaaa 592
>gb|BG947717.1|BG947717 IP1_8_C05.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 550
Score = 644 bits (325), Expect = 0.0
Identities = 460/504 (91%), Gaps = 17/504 (3%)
Strand = Plus / Minus
Query: 12 catacaagcagtattaaagtattcctgcaatcattgcatagtacagtggaacaacactac 71
||||||| ||||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct: 495 catacaatcagtattgaagtaatcctgcaatcagtgcatagtacagtggaacaa------ 442
Query: 72 aacaggctgtatagtgccttatttgtacaatgtctaggaagcaaactcaagtaccttaca 131
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 --caggctgtatagtgccttatttctacaatgtctaggaagcaaactcaagtaccttaca 384
Query: 132 ctgtttgatagatgaagaacacaaatacagtaaaatattagcgatgtgctatgtggtgct 191
|||||||||||| ||| ||| |||||||||||||| ||||||||| |||||||||||
Sbjct: 383 ctgtttgataga-gaaacacataaatacagtaaaatgctagcgatgtactatgtggtgca 325
Query: 192 cagcttccaccgagacatctatgctctttatgtgatgtttctgt--atatataattaatc 249
||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 324 cagctgccaccaagacatctatgctctttatgcgatgtttctgtgtatatataattaatc 265
Query: 250 tttatgcttgccatgta------cccaccattatattagcttgtgaaggttttctttaca 303
|| |||||||||||||| ||| ||||||||||||||||||||||||||||| ||
Sbjct: 264 ttcatgcttgccatgtaaattttccctccattatattagcttgtgaaggttttcttaacc 205
Query: 304 cctcgaactagcagtccttcaaaggtgatgcctgggccaaaagccaagatcaatccccac 363
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 cctcggactagcagtccttcaaaggtgatgcctgggccaaaagccaagatcaatccccac 145
Query: 364 tcttcacttattgcccctttctttaactcgtccctcaagtactccagcacatagaagatt 423
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 144 tcttcgcttattgcccctttctttagctcgtccctcaagtactccagcacatagaagatt 85
Query: 424 gtattgctgctcacatttccatagttcattaaggcttttctgctaatcttgagcttctct 483
|||||||||||||| || ||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 84 gtattgctgctcacgttcccatagttcttcaaggcttttctgctaatcttgagcttctct 25
Query: 484 ggctgaagtttaaggcagaactca 507
|||||||||| |||||||||||||
Sbjct: 24 ggctgaagttcaaggcagaactca 1
>gb|BG947632.1|BG947632 IP1_7_B01.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 533
Score = 617 bits (311), Expect = e-175
Identities = 443/486 (91%), Gaps = 17/486 (3%)
Strand = Plus / Minus
Query: 12 catacaagcagtattaaagtattcctgcaatcattgcatagtacagtggaacaacactac 71
||||||| ||||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct: 477 catacaatcagtattgaagtaatcctgcaatcagtgcatagtacagtggaacaa------ 424
Query: 72 aacaggctgtatagtgccttatttgtacaatgtctaggaagcaaactcaagtaccttaca 131
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 423 --caggctgtatagtgccttatttctacaatgtctaggaagcaaactcaagtaccttaca 366
Query: 132 ctgtttgatagatgaagaacacaaatacagtaaaatattagcgatgtgctatgtggtgct 191
|||||||||||| ||| ||| |||||||||||||| ||||||||| |||||||||||
Sbjct: 365 ctgtttgataga-gaaacacataaatacagtaaaatgctagcgatgtactatgtggtgca 307
Query: 192 cagcttccaccgagacatctatgctctttatgtgatgtttctgt--atatataattaatc 249
||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 306 cagctgccaccaagacatctatgctctttatgcgatgtttctgtgtatatataattaatc 247
Query: 250 tttatgcttgccatgta------cccaccattatattagcttgtgaaggttttctttaca 303
|| |||||||||||||| ||| ||||||||||||||||||||||||||||| ||
Sbjct: 246 ttcatgcttgccatgtaaattttccctccattatattagcttgtgaaggttttcttaacc 187
Query: 304 cctcgaactagcagtccttcaaaggtgatgcctgggccaaaagccaagatcaatccccac 363
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 cctcggactagcagtccttcaaaggtgatgcctgggccaaaagccaagatcaatccccac 127
Query: 364 tcttcacttattgcccctttctttaactcgtccctcaagtactccagcacatagaagatt 423
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 126 tcttcgcttattgcccctttctttagctcgtccctcaagtactccagcacatagaagatt 67
Query: 424 gtattgctgctcacatttccatagttcattaaggcttttctgctaatcttgagcttctct 483
|||||||||||||| || ||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 66 gtattgctgctcacgttcccatagttcttcaaggcttttctgctaatcttgagcttctct 7
Query: 484 ggctga 489
||||||
Sbjct: 6 ggctga 1
>gb|BI212108.1|BI212108 IP1_61_H06.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 466
Score = 611 bits (308), Expect = e-173
Identities = 417/450 (92%), Gaps = 10/450 (2%)
Strand = Plus / Minus
Query: 70 acaacaggctgtatagtgccttatttgtacaatgtctaggaagcaaactcaagtacctta 129
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 449 acaacaggctgtatagtgccttatttctacaatgtctaggaagcaaactcaagtacctta 390
Query: 130 cactgtttgatagatgaagaacacaaatacagtaaaatattagcgatgtgctatgtggtg 189
|||||||||||||| ||| ||| |||||||||||||| ||||||||| ||||||||||
Sbjct: 389 cactgtttgataga-gaaacacataaatacagtaaaatgctagcgatgtactatgtggtg 331
Query: 190 ctcagcttccaccgagacatctatgctctttatgtgatgtttctgt--atatataattaa 247
| ||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 330 cacagctgccaccaagacatctatgctctttatgcgatgtttctgtgtatatataattaa 271
Query: 248 tctttatgcttgccatgta------cccaccattatattagcttgtgaaggttttcttta 301
|||| |||||||||||||| ||| ||||||||||||||||||||||||||||| |
Sbjct: 270 tcttcatgcttgccatgtaaattttccctccattatattagcttgtgaaggttttcttaa 211
Query: 302 cacctcgaactagcagtccttcaaaggtgatgcctgggccaaaagccaagatcaatcccc 361
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 cccctcggactagcagtccttcaaaggtgatgcctgggccaaaagccaagatcaatcccc 151
Query: 362 actcttcacttattgcccctttctttaactcgtccctcaagtactccagcacatagaaga 421
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 150 actcttcgcttattgcccctttctttagctcgtccctcaagtactccagcacatagaaga 91
Query: 422 ttgtattgctgctcacatttccatagttcattaaggcttttctgctaatcttgagcttct 481
|||||||||||||||| || ||||||||| | ||||||||||||||||||||||||||||
Sbjct: 90 ttgtattgctgctcacgttcccatagttcttcaaggcttttctgctaatcttgagcttct 31
Query: 482 ctggctgaagtt-taaggcagaactcaagc 510
|||||||||||| ||||||||||||||||
Sbjct: 30 ctggctgaagttcaaaggcagaactcaagc 1
>gb|BG947659.1|BG947659 IP1_7_E03.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 508
Score = 605 bits (305), Expect = e-171
Identities = 437/480 (91%), Gaps = 17/480 (3%)
Strand = Plus / Minus
Query: 12 catacaagcagtattaaagtattcctgcaatcattgcatagtacagtggaacaacactac 71
||||||| ||||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct: 471 catacaatcagtattgaagtaatcctgcaatcagtgcatagtacagtggaacaa------ 418
Query: 72 aacaggctgtatagtgccttatttgtacaatgtctaggaagcaaactcaagtaccttaca 131
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 417 --caggctgtatagtgccttatttctacaatgtctaggaagcaaactcaagtaccttaca 360
Query: 132 ctgtttgatagatgaagaacacaaatacagtaaaatattagcgatgtgctatgtggtgct 191
|||||||||||| ||| ||| |||||||||||||| ||||||||| |||||||||||
Sbjct: 359 ctgtttgataga-gaaacacataaatacagtaaaatgctagcgatgtactatgtggtgca 301
Query: 192 cagcttccaccgagacatctatgctctttatgtgatgtttctgt--atatataattaatc 249
||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 300 cagctgccaccaagacatctatgctctttatgcgatgtttctgtgtatatataattaatc 241
Query: 250 tttatgcttgccatgta------cccaccattatattagcttgtgaaggttttctttaca 303
|| |||||||||||||| ||| ||||||||||||||||||||||||||||| ||
Sbjct: 240 ttcatgcttgccatgtaaattttccctccattatattagcttgtgaaggttttcttaacc 181
Query: 304 cctcgaactagcagtccttcaaaggtgatgcctgggccaaaagccaagatcaatccccac 363
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 cctcggactagcagtccttcaaaggtgatgcctgggccaaaagccaagatcaatccccac 121
Query: 364 tcttcacttattgcccctttctttaactcgtccctcaagtactccagcacatagaagatt 423
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 120 tcttcgcttattgcccctttctttagctcgtccctcaagtactccagcacatagaagatt 61
Query: 424 gtattgctgctcacatttccatagttcattaaggcttttctgctaatcttgagcttctct 483
|||||||||||||| || ||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 60 gtattgctgctcacgttcccatagttcttcaaggcttttctgctaatcttgagcttctct 1
>gb|BI211720.1|BI211720 IP1_27_B01.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 425
Score = 446 bits (225), Expect = e-123
Identities = 342/380 (90%), Gaps = 17/380 (4%)
Strand = Plus / Minus
Query: 12 catacaagcagtattaaagtattcctgcaatcattgcatagtacagtggaacaacactac 71
||||||| ||||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct: 371 catacaatcagtattgaagtaatcctgcaatcagtgcatagtacagtggaacaa------ 318
Query: 72 aacaggctgtatagtgccttatttgtacaatgtctaggaagcaaactcaagtaccttaca 131
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 317 --caggctgtatagtgccttatttctacaatgtctaggaagcaaactcaagtaccttaca 260
Query: 132 ctgtttgatagatgaagaacacaaatacagtaaaatattagcgatgtgctatgtggtgct 191
|||||||||||| ||| ||| |||||||||||||| ||||||||| |||||||||||
Sbjct: 259 ctgtttgataga-gaaacacataaatacagtaaaatgctagcgatgtactatgtggtgca 201
Query: 192 cagcttccaccgagacatctatgctctttatgtgatgtttc--tgtatatataattaatc 249
||||| ||||| |||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 200 cagctgccaccaagacatctatgctctttatgcgatgtttctgtgtatatataattaatc 141
Query: 250 tttatgcttgccatgta------cccaccattatattagcttgtgaaggttttctttaca 303
|| |||||||||||||| ||| ||||||||||||||||||||||||||||| ||
Sbjct: 140 ttcatgcttgccatgtaaattttccctccattatattagcttgtgaaggttttcttaacc 81
Query: 304 cctcgaactagcagtccttcaaaggtgatgcctgggccaaaagccaagatcaatccccac 363
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 cctcggactagcagtccttcaaaggtgatgcctgggccaaaagccaagatcaatccccac 21
Query: 364 tcttcacttattgccccttt 383
||||| ||||||||||||||
Sbjct: 20 tcttcgcttattgccccttt 1
>gb|BI075556.1|BI075556 IP1_22_A08.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 402
Score = 371 bits (187), Expect = e-101
Identities = 303/341 (88%), Gaps = 17/341 (4%)
Strand = Plus / Minus
Query: 12 catacaagcagtattaaagtattcctgcaatcattgcatagtacagtggaacaacactac 71
||||||| ||||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct: 332 catacaatcagtattgaagtaatcctgcaatcagtgcatagtacagtggaacaa------ 279
Query: 72 aacaggctgtatagtgccttatttgtacaatgtctaggaagcaaactcaagtaccttaca 131
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 278 --caggctgtatagtgccttatttctacaatgtctaggaagcaaactcaagtaccttaca 221
Query: 132 ctgtttgatagatgaagaacacaaatacagtaaaatattagcgatgtgctatgtggtgct 191
|||||||||||| ||| ||| |||||||||||||| ||||||||| |||||||||||
Sbjct: 220 ctgtttgataga-gaaacacataaatacagtaaaatgctagcgatgtactatgtggtgca 162
Query: 192 cagcttccaccgagacatctatgctctttatgtgatgtttc--tgtatatataattaatc 249
||||| ||||| |||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 161 cagctgccaccaagacatctatgctctttatgcgatgtttctgtgtatatataattaatc 102
Query: 250 tttatgcttgccatgta------cccaccattatattagcttgtgaaggttttctttaca 303
|| |||||||||||||| ||| ||||||||||||||||||||||||||||| ||
Sbjct: 101 ttcatgcttgccatgtaaattttccctccattatattagcttgtgaaggttttcttaacc 42
Query: 304 cctcgaactagcagtccttcaaaggtgatgcctgggccaaa 344
||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 41 cctcggactagcagtccttcaaaggtgatgcctgngccaaa 1
>gb|CW142569.1|CW142569 104_534_11136932_148_34945_080 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11136932, DNA
sequence
Length = 691
Score = 42.1 bits (21), Expect = 0.061
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 416 agaagattgtattgctgctca 436
|||||||||||||||||||||
Sbjct: 227 agaagattgtattgctgctca 247
>gb|CW194396.1|CW194396 104_617_11180079_116_36785_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11180079, DNA
sequence
Length = 686
Score = 42.1 bits (21), Expect = 0.061
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 416 agaagattgtattgctgctca 436
|||||||||||||||||||||
Sbjct: 154 agaagattgtattgctgctca 174
>gb|CW256119.1|CW256119 104_721_11226611_116_35140_048 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11226611, DNA
sequence
Length = 670
Score = 42.1 bits (21), Expect = 0.061
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 416 agaagattgtattgctgctca 436
|||||||||||||||||||||
Sbjct: 96 agaagattgtattgctgctca 116
>gb|CW264025.1|CW264025 104_732_11231049_116_35239_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11231049, DNA
sequence
Length = 688
Score = 42.1 bits (21), Expect = 0.061
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 416 agaagattgtattgctgctca 436
|||||||||||||||||||||
Sbjct: 75 agaagattgtattgctgctca 95
>gb|CW408872.1|CW408872 fsbb001f102p04k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f102p04, DNA
sequence
Length = 741
Score = 42.1 bits (21), Expect = 0.061
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 416 agaagattgtattgctgctca 436
|||||||||||||||||||||
Sbjct: 56 agaagattgtattgctgctca 76
>gb|CW501434.1|CW501434 fsbb001f297d24k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f297d24, DNA
sequence
Length = 736
Score = 42.1 bits (21), Expect = 0.061
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 416 agaagattgtattgctgctca 436
|||||||||||||||||||||
Sbjct: 225 agaagattgtattgctgctca 245
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 163,955
Number of Sequences: 832831
Number of extensions: 163955
Number of successful extensions: 47868
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47781
Number of HSP's gapped (non-prelim): 52
length of query: 636
length of database: 491,359,669
effective HSP length: 19
effective length of query: 617
effective length of database: 475,535,880
effective search space: 293405637960
effective search space used: 293405637960
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)