BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3106097.2.2
(1005 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG103716.1|BG103716 RHIZ2_39_H10.g1_A003 Rhizome2 (RHIZ2... 722 0.0
gb|BG410864.1|BG410864 EM1_26_H05.g1_A002 Embryo 1 (EM1) So... 696 0.0
gb|BE597862.1|BE597862 PI1_66_C12.g1_A002 Pathogen induced ... 630 e-179
gb|BF422038.1|BF422038 FM1_12_B10.g1_A003 Floral-Induced Me... 611 e-173
gb|BF177098.1|BF177098 EM1_3_F08.g1_A002 Embryo 1 (EM1) Sor... 565 e-159
gb|BM318323.1|BM318323 PI1_77_C05.g9_A002 Pathogen induced ... 557 e-157
gb|BG241433.1|BG241433 RHIZ2_49_B06.g1_A003 Rhizome2 (RHIZ2... 492 e-137
gb|CD212733.1|CD212733 HS1_16_B05.b1_A012 Heat-shocked seed... 488 e-136
gb|BG241327.1|BG241327 RHIZ2_49_A07.g1_A003 Rhizome2 (RHIZ2... 456 e-126
gb|BG488129.1|BG488129 RHIZ2_63_G11.g1_A003 Rhizome2 (RHIZ2... 400 e-109
gb|BG487867.1|BG487867 RHIZ2_60_D03.g1_A003 Rhizome2 (RHIZ2... 369 e-100
gb|AW678428.1|AW678428 WS1_15_B04.g1_A002 Water-stressed 1 ... 272 6e-071
gb|BG465821.1|BG465821 RHIZ2_45_A04.g1_A003 Rhizome2 (RHIZ2... 270 2e-070
gb|AW678429.1|AW678429 WS1_15_B03.g1_A002 Water-stressed 1 ... 266 4e-069
gb|BG488446.1|BG488446 RHIZ2_63_G11.b1_A003 Rhizome2 (RHIZ2... 234 1e-059
gb|BE364125.1|BE364125 PI1_11_D07.g1_A002 Pathogen induced ... 52 1e-004
gb|CN130960.1|CN130960 RHOH1_45_B03.b1_A002 Acid- and alkal... 52 1e-004
gb|BG465909.1|BG465909 RHIZ2_46_B03.g1_A003 Rhizome2 (RHIZ2... 48 0.002
gb|BG158559.1|BG158559 RHIZ2_42_A02.g1_A003 Rhizome2 (RHIZ2... 44 0.025
>gb|BG103716.1|BG103716 RHIZ2_39_H10.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 550
Score = 722 bits (364), Expect = 0.0
Identities = 413/428 (96%), Gaps = 1/428 (0%)
Strand = Plus / Plus
Query: 303 aaggagattaggaggacaatgagaatacaagcactgcgttgccatgttttgtacagccat 362
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 1 aaggagattaggaggacaatgagaattcaagcactgcgctgccatgttttgtacagccat 60
Query: 363 gatggtagcaagttgaatgtaattcctgttttggcttctcgctcacaggctttaaggtat 422
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gatggtagcaagctgaatgtaattcctgttttggcttctcgctcacaggctttaaggtat 120
Query: 423 ttgtatatccgatggggggtagagctgtcaaacatcaccgtgattgtcggtgagtgtggt 482
||||||||| |||||||||||||||||||||||||||| ||| |||||||||| ||||||
Sbjct: 121 ttgtatatcagatggggggtagagctgtcaaacatcactgtggttgtcggtgaatgtggt 180
Query: 483 gacacagattatgaaggactacttggaggcgtgcacaaaactatcatactcaaaggctcg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gacacagattatgaaggactacttggaggcgtgcacaaaactatcatactcaaaggctcg 240
Query: 543 ttcaatactgctccaaaccaagttcatgctaacagaagctattcatcccaagatgttgta 602
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 241 ttcaatactgctccaaaccaagtccatgctaacagaagctattcattccaagatgttgta 300
Query: 603 tcctttgacaaacaaggaattgcttcaattgagggatatggtccagacaatctaaagtca 662
||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 301 tcccttgagaaacaaggaattgcttcaattgagggatatggtccagacaatctaaaatca 360
Query: 663 gctctacggcaatttggtatattgaaagactaaatctttgatctttgctggtcagcagag 722
|||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 361 gctctaaggcaatttggtatatcgaaagactaaatctttgatc-ttgctggtcagcagag 419
Query: 723 gaatcaaa 730
||||||||
Sbjct: 420 gaatcaaa 427
>gb|BG410864.1|BG410864 EM1_26_H05.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 659
Score = 696 bits (351), Expect = 0.0
Identities = 403/419 (96%), Gaps = 1/419 (0%)
Strand = Plus / Plus
Query: 312 aggaggacaatgagaatacaagcactgcgttgccatgttttgtacagccatgatggtagc 371
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 aggaggacaatgagaattcaagcactgcgctgccatgttttgtacagccatgatggtagc 60
Query: 372 aagttgaatgtaattcctgttttggcttctcgctcacaggctttaaggtatttgtatatc 431
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aagctgaacgtaattcctgttttggcttctcgctcacaggctttaaggtatttgtatatc 120
Query: 432 cgatggggggtagagctgtcaaacatcaccgtgattgtcggtgagtgtggtgacacagat 491
|||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||
Sbjct: 121 agatggggggtagagctgtcaaacatcactgtggttgtcggtgaatgtggtgacacagat 180
Query: 492 tatgaaggactacttggaggcgtgcacaaaactatcatactcaaaggctcgttcaatact 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tatgaaggactacttggaggcgtgcacaaaactatcatactcaaaggctcgttcaatact 240
Query: 552 gctccaaaccaagttcatgctaacagaagctattcatcccaagatgttgtatcctttgac 611
|||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 241 gctccaaaccaagtccatgctaacagaagctattcattccaagatgttgtatcccttgag 300
Query: 612 aaacaaggaattgcttcaattgagggatatggtccagacaatctaaagtcagctctacgg 671
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 301 aaacaaggaattgcttcaattgagggatatggtccagacaatctaaaatcagctctaagg 360
Query: 672 caatttggtatattgaaagactaaatctttgatctttgctggtcagcagaggaatcaaa 730
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 361 caatttggtatatcgaaagactaaatctttgatc-ttgctggtcagcagaggaatcaaa 418
>gb|BE597862.1|BE597862 PI1_66_C12.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 666
Score = 630 bits (318), Expect = e-179
Identities = 364/378 (96%), Gaps = 1/378 (0%)
Strand = Plus / Plus
Query: 353 gtacagccatgatggtagcaagttgaatgtaattcctgttttggcttctcgctcacaggc 412
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 1 gtacagccatgatggtagcaagctgaacgtaattcctgttttggcttctcgctcacaggc 60
Query: 413 tttaaggtatttgtatatccgatggggggtagagctgtcaaacatcaccgtgattgtcgg 472
||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||
Sbjct: 61 tttaaggtatttgtatatcagatggggggtagagctgtcaaacatcactgtggttgtcgg 120
Query: 473 tgagtgtggtgacacagattatgaaggactacttggaggcgtgcacaaaactatcatact 532
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgaatgtggtgacacagattatgaaggactacttggaggcgtgcacaaaactatcatact 180
Query: 533 caaaggctcgttcaatactgctccaaaccaagttcatgctaacagaagctattcatccca 592
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 181 caaaggctcgttcaatactgctccaaaccaagtccatgctaacagaagctattcattcca 240
Query: 593 agatgttgtatcctttgacaaacaaggaattgcttcaattgagggatatggtccagacaa 652
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agatgttgtatcccttgagaaacaaggaattgcttcaattgagggatatggtccagacaa 300
Query: 653 tctaaagtcagctctacggcaatttggtatattgaaagactaaatctttgatctttgctg 712
|||||| ||||||||| ||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 301 tctaaaatcagctctaaggcaatttggtatatcgaaagactaaatctttgatc-ttgctg 359
Query: 713 gtcagcagaggaatcaaa 730
||||||||||||||||||
Sbjct: 360 gtcagcagaggaatcaaa 377
>gb|BF422038.1|BF422038 FM1_12_B10.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 673
Score = 611 bits (308), Expect = e-173
Identities = 353/367 (96%), Gaps = 1/367 (0%)
Strand = Plus / Plus
Query: 364 atggtagcaagttgaatgtaattcctgttttggcttctcgctcacaggctttaaggtatt 423
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atggtagcaagctgaatgtaattcctgttttggcttctcgctcacaggctttaaggtatt 60
Query: 424 tgtatatccgatggggggtagagctgtcaaacatcaccgtgattgtcggtgagtgtggtg 483
|||||||| |||||| ||||||||||||||||||||| ||| |||||||||| |||||||
Sbjct: 61 tgtatatcagatgggnggtagagctgtcaaacatcactgtggttgtcggtgaatgtggtg 120
Query: 484 acacagattatgaaggactacttggaggcgtgcacaaaactatcatactcaaaggctcgt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acacagattatgaaggactacttggaggcgtgcacaaaactatcatactcaaaggctcgt 180
Query: 544 tcaatactgctccaaaccaagttcatgctaacagaagctattcatcccaagatgttgtat 603
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 181 tcaatactgctccaaaccaagtccatgctaacagaagctattcattccaagatgttgtat 240
Query: 604 cctttgacaaacaaggaattgcttcaattgagggatatggtccagacaatctaaagtcag 663
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 241 cccttgagaaacaaggaattgcttcaattgagggatatggtccagacaatctaaaatcag 300
Query: 664 ctctacggcaatttggtatattgaaagactaaatctttgatctttgctggtcagcagagg 723
||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 301 ctctaaggcaatttggtatatcgaaagactaaatctttgatc-ttgctggtcagcagagg 359
Query: 724 aatcaaa 730
|||||||
Sbjct: 360 aatcaaa 366
>gb|BF177098.1|BF177098 EM1_3_F08.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 603
Score = 565 bits (285), Expect = e-159
Identities = 337/353 (95%), Gaps = 1/353 (0%)
Strand = Plus / Plus
Query: 407 acaggctttaaggtatttgtatatccgatggggggtagagctgtcaaacatcaccgtgat 466
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
Sbjct: 1 acaggctttaaggtatttgtatatcagatggggggtagagctgtcaaacatcactgtggt 60
Query: 467 tgtcggtgagtgtggtgacacagattatgaaggactacttggaggcgtgcacaaaactat 526
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgtcggtgaatgtggtgacacagattatgaaggactacttggaggcgtgcacaaaactat 120
Query: 527 catactcaaaggctcgttcaatactgctccaaaccaagttcatgctaacagaagctattc 586
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 121 catactcaaaggctcgttcaatactgctccaaaccaagtccatgctaacagaagctattc 180
Query: 587 atcccaagatgttgtatcctttgacaaacaaggaattgcttcaattgagggatatggtcc 646
|| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 181 attccaagatgttgtatcccttgagaaacaaggaattgcttcaattgagggatatggtcc 240
Query: 647 agacaatctaaagtcagctctacggcaatttggtatattgaaagactaaatctttgatct 706
|||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 241 agacaatctaaaatcagctctaaggcaatttggtatatcgaaagactaaatctttgatc- 299
Query: 707 ttgctggtcagcagaggaatcaaagcaggtatcgtgagacagttttgctacaa 759
|||||||||||||||||||||||| ||||||| |||||||||||| ||||||
Sbjct: 300 ttgctggtcagcagaggaatcaaactaggtatcttgagacagttttactacaa 352
Score = 101 bits (51), Expect = 1e-019
Identities = 72/79 (91%)
Strand = Plus / Plus
Query: 802 cattcgaagtgcaaagttgaaattacatgtgtgcttttgaaacttaaagggcaaatacac 861
||||||||||||||||| |||||||||||||||||| ||||||||||| || | ||||||
Sbjct: 396 cattcgaagtgcaaagtcgaaattacatgtgtgcttctgaaacttaaaaggaagatacac 455
Query: 862 aaaccgacacttatctaca 880
||| |||||||| ||||||
Sbjct: 456 aaaacgacacttgtctaca 474
>gb|BM318323.1|BM318323 PI1_77_C05.g9_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 575
Score = 557 bits (281), Expect = e-157
Identities = 321/333 (96%), Gaps = 1/333 (0%)
Strand = Plus / Plus
Query: 398 ttctcgctcacaggctttaaggtatttgtatatccgatggggggtagagctgtcaaacat 457
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 ttctcgctcacaggctttaaggtatttgtatatcagatggggggtagagctgtcaaacat 60
Query: 458 caccgtgattgtcggtgagtgtggtgacacagattatgaaggactacttggaggcgtgca 517
||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cactgtggttgtcggtgaatgtggtgacacagattatgaaggactacttggaggcgtgca 120
Query: 518 caaaactatcatactcaaaggctcgttcaatactgctccaaaccaagttcatgctaacag 577
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 121 caaaactatcatactcaaaggctcgttcaatactgctccaaaccaagtccatgctaacag 180
Query: 578 aagctattcatcccaagatgttgtatcctttgacaaacaaggaattgcttcaattgaggg 637
||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 181 aagctattcattccaagatgttgtatcccttgagaaacaaggaattgcttcaattgaggg 240
Query: 638 atatggtccagacaatctaaagtcagctctacggcaatttggtatattgaaagactaaat 697
||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||
Sbjct: 241 atatggtccagacaatctaaaatcagctctaaggcaatttggtatatcgaaagactaaat 300
Query: 698 ctttgatctttgctggtcagcagaggaatcaaa 730
|||||||| ||||||||||||||||||||||||
Sbjct: 301 ctttgatc-ttgctggtcagcagaggaatcaaa 332
>gb|BG241433.1|BG241433 RHIZ2_49_B06.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 524
Score = 492 bits (248), Expect = e-137
Identities = 354/389 (91%), Gaps = 2/389 (0%)
Strand = Plus / Plus
Query: 493 atgaaggactacttggaggcgtgcacaaaactatcatactcaaaggctcgttcaatactg 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgaaggactacttggaggcgtgcacaaaactatcatactcaaaggctcgttcaatactg 60
Query: 553 ctccaaaccaagttcatgctaacagaagctattcatcccaagatgttgtatcctttgaca 612
||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||| |
Sbjct: 61 ctccaaaccaagtccatgctaacagaagctattcattccaagatgttgtatcccttgaga 120
Query: 613 aacaaggaattgcttcaattgagggatatggtccagacaatctaaagtcagctctacggc 672
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 121 aacaaggaattgcttcaattgagggatatggtccagacaatctaaaatcagctctaaggc 180
Query: 673 aatttggtatattgaaagactaaatctttgatctttgctggtcagcagaggaatcaaagc 732
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 181 aatttggtatatcgaaagactaaatctttgatc-ttgctggtcagcagaggaatcaaact 239
Query: 733 aggtatcgtgagacagttttgctacaa-annnnnnnctaatgttgagagatatttcacac 791
|||||||||||||||||||| |||||| ||||||| ||| ||||||||| |
Sbjct: 240 aggtatcgtgagacagttttactacaatttttttttctaatgtggagcgatatttcatgc 299
Query: 792 ccaagatcggcattcgaagtgcaaagttgaaattacatgtgtgcttttgaaacttaaagg 851
|| ||| | |||||||||||||||| ||||| ||||||||||||||||||||||||| |
Sbjct: 300 ccgagacccacattcgaagtgcaaagatgaaaatacatgtgtgcttttgaaacttaaaag 359
Query: 852 gcaaatacacaaaccgacacttatctaca 880
| | ||||||||| |||||||| ||||||
Sbjct: 360 gaagatacacaaaacgacacttgtctaca 388
>gb|CD212733.1|CD212733 HS1_16_B05.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_16_B05_A012 3', mRNA sequence
Length = 606
Score = 488 bits (246), Expect = e-136
Identities = 285/297 (95%), Gaps = 1/297 (0%)
Strand = Plus / Plus
Query: 434 atggggggtagagctgtcaaacatcaccgtgattgtcggtgagtgtggtgacacagatta 493
||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||
Sbjct: 1 atggggggtagagctgtcaaacatcactgtggttgtcggtgaatgtggtgacacagatta 60
Query: 494 tgaaggactacttggaggcgtgcacaaaactatcatactcaaaggctcgttcaatactgc 553
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgaaggactactnggaggcgtgcacaaaactatcatactcaaaggctcgttcaatactgc 120
Query: 554 tccaaaccaagttcatgctaacagaagctattcatcccaagatgttgtatcctttgacaa 613
|||||||||||| |||||||||||||||||||||| |||||||||||||||| |||| ||
Sbjct: 121 tccaaaccaagtccatgctaacagaagctattcattccaagatgttgtatcccttgagaa 180
Query: 614 acaaggaattgcttcaattgagggatatggtccagacaatctaaagtcagctctacggca 673
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 181 acaaggaattgcttcaattgagggatatggtccagacaatctaaaatcagctctaaggca 240
Query: 674 atttggtatattgaaagactaaatctttgatctttgctggtcagcagaggaatcaaa 730
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 241 atttggtatatcgaaagactaaatctttgatc-ttgctggtcagcagaggaatcaaa 296
>gb|BG241327.1|BG241327 RHIZ2_49_A07.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 577
Score = 456 bits (230), Expect = e-126
Identities = 267/278 (96%), Gaps = 1/278 (0%)
Strand = Plus / Plus
Query: 453 aacatcaccgtgattgtcggtgagtgtggtgacacagattatgaaggactacttggaggc 512
|||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1 aacatcactgtggttgtcggtgaatgtggtgacacagattatgaaggactacttggaggc 60
Query: 513 gtgcacaaaactatcatactcaaaggctcgttcaatactgctccaaaccaagttcatgct 572
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 61 gtgcacaaaactatcatactcaaaggctcgttcaatactgctccaaaccaagtccatgct 120
Query: 573 aacagaagctattcatcccaagatgttgtatcctttgacaaacaaggaattgcttcaatt 632
|||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 121 aacagaagctattcattccaagatgttgtatcccttgagaaacaaggaattgcttcaatt 180
Query: 633 gagggatatggtccagacaatctaaagtcagctctacggcaatttggtatattgaaagac 692
|||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||
Sbjct: 181 gagggatatggtccagacaatctaaaatcagctctaaggcaatttggtatatcgaaagac 240
Query: 693 taaatctttgatctttgctggtcagcagaggaatcaaa 730
||||||||||||| ||||||||||||||||||||||||
Sbjct: 241 taaatctttgatc-ttgctggtcagcagaggaatcaaa 277
>gb|BG488129.1|BG488129 RHIZ2_63_G11.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 525
Score = 400 bits (202), Expect = e-109
Identities = 308/343 (89%), Gaps = 2/343 (0%)
Strand = Plus / Plus
Query: 539 ctcgttcaatactgctccaaaccaagttcatgctaacagaagctattcatcccaagatgt 598
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 1 ctcgttcaatactgctccaaaccaagtccatgctaacagaagctattcattccaagatgt 60
Query: 599 tgtatcctttgacaaacaaggaattgcttcaattgagggatatggtccagacaatctaaa 658
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgtatcccttgagaaacaaggaattgcttcaattgagggatatggtccagacaatctaaa 120
Query: 659 gtcagctctacggcaatttggtatattgaaagactaaatctttgatctttgctggtcagc 718
||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 121 atcagctctaaggcaatttggtatatcgaaagactaaatctttgatc-ttgctggtcagc 179
Query: 719 agaggaatcaaagcaggtatcgtgagacagttttgctacaa-annnnnnnctaatgttga 777
|||||||||||| |||||||||||||||||||| |||||| ||||||| ||
Sbjct: 180 agaggaatcaaactaggtatcgtgagacagttttactacaatttttttttctaatgtgga 239
Query: 778 gagatatttcacacccaagatcggcattcgaagtgcaaagttgaaattacatgtgtgctt 837
| ||||||||| ||| ||| | |||||||||||||||| ||||| |||||||||||||
Sbjct: 240 gcgatatttcatgcccgagacccacattcgaagtgcaaagatgaaaatacatgtgtgctt 299
Query: 838 ttgaaacttaaagggcaaatacacaaaccgacacttatctaca 880
|||||||||||| || | ||||||||| |||||||| ||||||
Sbjct: 300 ttgaaacttaaaaggaagatacacaaaacgacacttgtctaca 342
>gb|BG487867.1|BG487867 RHIZ2_60_D03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 523
Score = 369 bits (186), Expect = e-100
Identities = 214/222 (96%), Gaps = 1/222 (0%)
Strand = Plus / Plus
Query: 509 aggcgtgcacaaaactatcatactcaaaggctcgttcaatactgctccaaaccaagttca 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4 aggcgtgcacaaaactatcatactcaaaggctcgttcaatactgctccaaaccaagtcca 63
Query: 569 tgctaacagaagctattcatcccaagatgttgtatcctttgacaaacaaggaattgcttc 628
|||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||
Sbjct: 64 tgctaacagaagctattcattccaagatgttgtatcccttgagaaacaaggaattgcttc 123
Query: 629 aattgagggatatggtccagacaatctaaagtcagctctacggcaatttggtatattgaa 688
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||
Sbjct: 124 aattgagggatatggtccagacaatctaaaatcagctctaaggcaatttggtatatcgaa 183
Query: 689 agactaaatctttgatctttgctggtcagcagaggaatcaaa 730
||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 184 agactaaatctttgatc-ttgctggtcagcagaggaatcaaa 224
>gb|AW678428.1|AW678428 WS1_15_B04.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 458
Score = 272 bits (137), Expect = 6e-071
Identities = 171/181 (94%), Gaps = 1/181 (0%)
Strand = Plus / Plus
Query: 550 ctgctccaaaccaagttcatgctaacagaagctattcatcccaagatgttgtatcctttg 609
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 1 ctgctccaaaccaagtccatgctaacagaagctattcattccaagatgttgtatcccttg 60
Query: 610 acaaacaaggaattgcttcaattgagggatatggtccagacaatctaaagtcagctctac 669
| |||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||
Sbjct: 61 agaaacaaggaattgcttcaattgagggatatggtccagacaatttaaaatcagctttaa 120
Query: 670 ggcaatttggtatattgaaagactaaatctttgatctttgctggtcagcagaggaatcaa 729
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 121 ggcaatttggtatatcgaaagactaaatctttgatc-ttgctggtcagcagaggaatcaa 179
Query: 730 a 730
|
Sbjct: 180 a 180
>gb|BG465821.1|BG465821 RHIZ2_45_A04.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 499
Score = 270 bits (136), Expect = 2e-070
Identities = 170/180 (94%), Gaps = 1/180 (0%)
Strand = Plus / Plus
Query: 551 tgctccaaaccaagttcatgctaacagaagctattcatcccaagatgttgtatcctttga 610
||||||||||||||| |||| ||||||||||||||||| |||||||||||||||| ||||
Sbjct: 1 tgctccaaaccaagtccatgttaacagaagctattcattccaagatgttgtatcccttga 60
Query: 611 caaacaaggaattgcttcaattgagggatatggtccagacaatctaaagtcagctctacg 670
||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
Sbjct: 61 gaaacaaggaattgcttcaattgagggatatggtccagacaatctaaaatcagctttaag 120
Query: 671 gcaatttggtatattgaaagactaaatctttgatctttgctggtcagcagaggaatcaaa 730
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 121 gcaatttggtatatcgaaagactaaatctttgatc-ttgctggtcagcagaggaatcaaa 179
>gb|AW678429.1|AW678429 WS1_15_B03.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 451
Score = 266 bits (134), Expect = 4e-069
Identities = 168/178 (94%), Gaps = 1/178 (0%)
Strand = Plus / Plus
Query: 553 ctccaaaccaagttcatgctaacagaagctattcatcccaagatgttgtatcctttgaca 612
||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||| |
Sbjct: 1 ctccaaaccaagtccatgctaacagaagctattcattccaagatgttgtatcccttgaga 60
Query: 613 aacaaggaattgcttcaattgagggatatggtccagacaatctaaagtcagctctacggc 672
||||||||||||||||||||||||||||||||||||||||| |||| |||||| || |||
Sbjct: 61 aacaaggaattgcttcaattgagggatatggtccagacaatttaaaatcagctttaaggc 120
Query: 673 aatttggtatattgaaagactaaatctttgatctttgctggtcagcagaggaatcaaa 730
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 121 aatttggtatatcgaaagactaaatctttgatc-ttgctggtcagcagaggaatcaaa 177
>gb|BG488446.1|BG488446 RHIZ2_63_G11.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 538
Score = 234 bits (118), Expect = 1e-059
Identities = 145/157 (92%)
Strand = Plus / Plus
Query: 3 gggatagaagctagtgnntttgntgccttcatatgcaacagnngnantgatctttgnnat 62
|||||||||||||||| |||| ||||||||||||||||| | | ||||||||| ||
Sbjct: 382 gggatagaagctagtgactttgacgccttcatatgcaacagtggcagtgatctttgttat 441
Query: 63 ccatcttcaagctctgaggacatgcttaaccctgctgagctcccattcatgattgatctt 122
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 442 ccatcttcaaactctgaggacatgcttagccctgctgagctcccattcatgattgatctt 501
Query: 123 gattatcactcccaaattgaatatcgctggggaggag 159
|||||||||||||||||||||||||||||||||||||
Sbjct: 502 gattatcactcccaaattgaatatcgctggggaggag 538
>gb|BE364125.1|BE364125 PI1_11_D07.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 653
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 144 tatcgctggggaggagaaggtttaaggaag 173
||||| ||||||||||||||||||||||||
Sbjct: 67 tatcgttggggaggagaaggtttaaggaag 96
>gb|CN130960.1|CN130960 RHOH1_45_B03.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_45_B03_A002 3', mRNA sequence
Length = 836
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 144 tatcgctggggaggagaaggtttaaggaag 173
||||| ||||||||||||||||||||||||
Sbjct: 150 tatcgttggggaggagaaggtttaaggaag 179
>gb|BG465909.1|BG465909 RHIZ2_46_B03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 279
Score = 48.1 bits (24), Expect = 0.002
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 802 cattcgaagtgcaaagttgaaattacatgtgtgcttttgaaacttaaa 849
|||| |||||||||| ||||| ||||||| ||||||||||||||||
Sbjct: 13 catttgaagtgcaaaaatgaaaaaacatgtgggcttttgaaacttaaa 60
>gb|BG158559.1|BG158559 RHIZ2_42_A02.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 152
Score = 44.1 bits (22), Expect = 0.025
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 875 tctacatggtttnnnacccatcacagtgcatcttgcttatcta 917
|||||||||||| ||||| | |||||||||||||||||||
Sbjct: 14 tctacatggttttcctcccattatagtgcatcttgcttatcta 56
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 241,713
Number of Sequences: 832831
Number of extensions: 241713
Number of successful extensions: 66281
Number of sequences better than 0.5: 19
Number of HSP's better than 0.5 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66239
Number of HSP's gapped (non-prelim): 28
length of query: 1005
length of database: 491,359,669
effective HSP length: 20
effective length of query: 985
effective length of database: 474,703,049
effective search space: 467582503265
effective search space used: 467582503265
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)