BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3071761.2.1
(638 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX613435.1|CX613435 GABR1_8_D10.b1_A002 GA- or brassinol... 573 e-162
gb|BE359084.1|BE359084 DG1_38_H02.g1_A002 Dark Grown 1 (DG1... 551 e-155
gb|CF429879.1|CF429879 PH1_25_E11.b1_A002 Phosphorous-defic... 541 e-152
gb|CD232716.1|CD232716 SS1_1_H12.b1_A012 Salt-stressed seed... 539 e-151
gb|CW194291.1|CW194291 104_617_11180020_116_36786_008 Sorgh... 212 3e-053
gb|CW353056.1|CW353056 fsbb001f015k03f0 Sorghum methylation... 212 3e-053
gb|CW034153.1|CW034153 104_264_10502381_115_30380 Sorghum m... 202 3e-050
gb|CW134050.1|CW134050 104_518_11117099_148_34816_046 Sorgh... 202 3e-050
gb|CW194292.1|CW194292 104_617_11180020_148_36790_008 Sorgh... 202 3e-050
gb|BZ629316.1|BZ629316 ih65e07.b1 WGS-SbicolorF (DH5a methy... 88 1e-015
gb|CW071495.1|CW071495 104_323_10591543_114_30471 Sorghum m... 88 1e-015
gb|CW077966.1|CW077966 104_386_10894698_116_31912_378 Sorgh... 88 1e-015
gb|CW077967.1|CW077967 104_386_10894698_148_31911_378 Sorgh... 88 1e-015
gb|CW078695.1|CW078695 104_396_10898313_114_31923_153 Sorgh... 88 1e-015
gb|CW128046.1|CW128046 104_509_11113781_116_34744_023 Sorgh... 88 1e-015
gb|BI211898.1|BI211898 IP1_62_G05.g1_A002 Immature pannicle... 88 1e-015
gb|CN129079.1|CN129079 RHOH1_33_H09.b3_A002 Acid- and alkal... 88 1e-015
gb|CD235658.1|CD235658 SS1_37_F06.b1_A012 Salt-stressed see... 82 7e-014
gb|CW073480.1|CW073480 104_335_10779929_114_31363_329 Sorgh... 76 4e-012
gb|CW345534.1|CW345534 104_848_11488543_148_36210_022 Sorgh... 76 4e-012
gb|BE597274.1|BE597274 PI1_70_C05.g1_A002 Pathogen induced ... 76 4e-012
gb|CD229384.1|CD229384 CCC1_15_E01.b1_A007 Callus culture/c... 76 4e-012
gb|CD429206.1|CD429206 ETH1_3_C09.b1_A002 Ethylene-treated ... 76 4e-012
gb|CN129749.1|CN129749 RHOH1_37_E03.b1_A002 Acid- and alkal... 76 4e-012
gb|CW208270.1|CW208270 104_637_11188585_116_37043_003 Sorgh... 70 3e-010
gb|CW362994.1|CW362994 fsbb001f034f02k0 Sorghum methylation... 70 3e-010
gb|CW222301.1|CW222301 104_657_11202303_148_37174_052 Sorgh... 68 1e-009
gb|CL190993.1|CL190993 104_409_10906471_114_32488_022 Sorgh... 64 2e-008
gb|CL190994.1|CL190994 104_409_10906471_116_32496_022 Sorgh... 64 2e-008
gb|CW331181.1|CW331181 104_828_11480770_148_36025_041 Sorgh... 64 2e-008
gb|CW426309.1|CW426309 fsbb001f137k03k0 Sorghum methylation... 64 2e-008
gb|CW493569.1|CW493569 fsbb001f284g08f0 Sorghum methylation... 64 2e-008
gb|CW380206.1|CW380206 fsbb001f059o07f0 Sorghum methylation... 62 7e-008
gb|CN145355.1|CN145355 WOUND1_28_A03.g1_A002 Wounded leaves... 62 7e-008
gb|CW471409.1|CW471409 fsbb001f225e14f0 Sorghum methylation... 60 3e-007
gb|CX606247.1|CX606247 ANR1_2_A04.b1_A002 Anaerobic roots S... 60 3e-007
gb|CW134046.1|CW134046 104_518_11117097_148_34816_045 Sorgh... 52 6e-005
gb|CW361238.1|CW361238 fsbb001f029k23k0 Sorghum methylation... 48 0.001
gb|AI724956.1|AI724956 RHIZ1_31_H10.y3_A001 Rhizome1 (RHIZ1... 48 0.001
gb|CW029877.1|CW029877 104_257_10499927_116_30402 Sorghum m... 46 0.004
gb|CW060766.1|CW060766 104_304_10520036_114_30143 Sorghum m... 46 0.004
gb|CW086531.1|CW086531 104_430_10947042_116_33018_071 Sorgh... 46 0.004
gb|CW327532.1|CW327532 104_823_11478800_116_35982_028 Sorgh... 46 0.004
gb|CW327533.1|CW327533 104_823_11478800_148_35981_028 Sorgh... 46 0.004
gb|CW327562.1|CW327562 104_823_11478815_116_35979_092 Sorgh... 46 0.004
gb|CW327563.1|CW327563 104_823_11478815_148_35980_092 Sorgh... 46 0.004
gb|CN127673.1|CN127673 RHOH1_24_H12.b1_A002 Acid- and alkal... 46 0.004
gb|CW071497.1|CW071497 104_323_10591543_116_30454 Sorghum m... 44 0.016
gb|CW146571.1|CW146571 104_539_11139064_116_34991_056 Sorgh... 44 0.016
gb|CW229009.1|CW229009 104_670_11207076_148_37261_046 Sorgh... 42 0.061
gb|CW457761.1|CW457761 fsbb001f203l13f0 Sorghum methylation... 42 0.061
gb|BE361074.1|BE361074 DG1_69_B10.b1_A002 Dark Grown 1 (DG1... 40 0.24
gb|BE361092.1|BE361092 DG1_69_G11.b1_A002 Dark Grown 1 (DG1... 40 0.24
gb|BE361158.1|BE361158 DG1_70_G10.b1_A002 Dark Grown 1 (DG1... 40 0.24
gb|BE367145.1|BE367145 PI1_43_G06.b1_A002 Pathogen induced ... 40 0.24
gb|BE597629.1|BE597629 PI1_72_B07.b1_A002 Pathogen induced ... 40 0.24
gb|BE598127.1|BE598127 PI1_66_A09.b1_A002 Pathogen induced ... 40 0.24
gb|BF176901.1|BF176901 EM1_4_B04.b1_A002 Embryo 1 (EM1) Sor... 40 0.24
gb|BF656020.1|BF656020 FM1_42_H11.b1_A003 Floral-Induced Me... 40 0.24
gb|BG050097.1|BG050097 FM1_66_F04.b1_A003 Floral-Induced Me... 40 0.24
gb|BG102435.1|BG102435 RHIZ2_23_F08.b1_A003 Rhizome2 (RHIZ2... 40 0.24
gb|BG102868.1|BG102868 RHIZ2_34_D07.b1_A003 Rhizome2 (RHIZ2... 40 0.24
gb|BG357999.1|BG357999 OV2_32_H08.b1_A002 Ovary 2 (OV2) Sor... 40 0.24
gb|BG412026.1|BG412026 OV2_37_B03.b1_A002 Ovary 2 (OV2) Sor... 40 0.24
gb|CB926605.1|CB926605 ABA1_2_G10.g1_A012 Abscisic acid-tre... 40 0.24
gb|CD231021.1|CD231021 SS1_7_H12.g1_A012 Salt-stressed seed... 40 0.24
gb|CD233545.1|CD233545 SS1_2_A11.g1_A012 Salt-stressed seed... 40 0.24
>gb|CX613435.1|CX613435 GABR1_8_D10.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_8_D10_A002 3', mRNA sequence
Length = 693
Score = 573 bits (289), Expect = e-162
Identities = 328/341 (96%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 149 cttcatcgtcgacaggctcaaggagatcatcaagtacaaggggttccaggtgccgccggc 208
Query: 61 ggagctggaggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgtatcaat 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 209 cgagctcgaggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgtgtcaat 268
Query: 121 gaacgatgaccttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggttctca 180
||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 269 gaaggatgatcttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggctctga 328
Query: 181 agtcaccgaggatgagatcaagcaattcgtcgccaaggaggtggttttctacaagaagat 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 329 agtcaccgaggatgagatcaagcaatttgtcgccaaggaggtggttttctacaagaagat 388
Query: 241 ccacaaggtcttcttcaccgaatccatccccaagaacccgtcgggcaagatcctgaggaa 300
||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 389 ccacaaggttttcttcactgaatccatccccaagaacccgtccggcaagatcctaaggaa 448
Query: 301 ggacttgagagccaggctcgccgccggtgttcactgaggcc 341
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ggacttgagagccaggctcgccgccggtgttcactgaggcc 489
Score = 79.8 bits (40), Expect = 3e-013
Identities = 98/114 (85%), Gaps = 5/114 (4%)
Strand = Plus / Plus
Query: 415 tattcatgaactggcaacagaagggacacgtattcctgtggaacacatgttgccagaaag 474
|||||||||| ||||||||||| | | |||| |||||||||| ||||||||||| ||||
Sbjct: 552 tattcatgaaagggcaacagaagaggcgcgtaatcctgtggaa-acatgttgcca-aaag 609
Query: 475 aggttttagtttgtctgtttgttggccctgtgtgtaatgttcataaacgatata 528
||||||||||| || ||||||| | | ||||||||||||||||||||||||
Sbjct: 610 aggttttagttggtttgtttgt---ctgtttgtgtaatgttcataaacgatata 660
>gb|BE359084.1|BE359084 DG1_38_H02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 384
Score = 551 bits (278), Expect = e-155
Identities = 323/338 (95%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 47 cttcatcgtcgacaggctcaaggagatcatcaagtacaaggggttacaggtgccgccggc 106
Query: 61 ggagctggaggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgtatcaat 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 107 cgagctcgaggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgtgtcaat 166
Query: 121 gaacgatgaccttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggttctca 180
||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 167 gaaggatgatcttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggctctga 226
Query: 181 agtcaccgaggatgagatcaagcaattcgtcgccaaggaggtggttttctacaagaagat 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 227 agtcaccgaggatgagatcaagcaatttgtcgccaaggaggtggttttctacaagaagat 286
Query: 241 ccacaaggtcttcttcaccgaatccatccccaagaacccgtcgggcaagatcctgaggaa 300
||||||||| |||||| | ||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 287 ccacaaggttttcttctctgaatccatccccaagaacccgtccggcaagatcctaaggaa 346
Query: 301 ggacttgagagccaggctcgccgccggtgttcactgag 338
||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ggacttgagagccaggctcgccgccggtgttcactgag 384
>gb|CF429879.1|CF429879 PH1_25_E11.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_25_E11_A002 3', mRNA sequence
Length = 591
Score = 541 bits (273), Expect = e-152
Identities = 319/333 (95%), Gaps = 1/333 (0%)
Strand = Plus / Plus
Query: 10 cgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggcggagctgga 69
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct: 1 cgacaggctcaaggagatcatcaagtacaaggggttccaggtgccgccggccgagctcga 60
Query: 70 ggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgtatcaatgaacgatga 129
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 61 ggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgtgtcaatgaaggatga 120
Query: 130 ccttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggttctcaagtcaccga 189
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 121 tcttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggctctgaagtcaccga 180
Query: 190 ggatgagatcaagcaattcgtcgccaaggaggtggttttctacaagaagatccacaaggt 249
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggatgagatcaagcaatttgtcgccaaggaggtggttttctacaagaagatccacaaggt 240
Query: 250 cttcttcaccgaatccatccccaagaacccgtcgggcaagatcctgaggaaggacttgag 309
|||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 241 tttcttcactgaatccatccccaagaacccgtccggcaagatcctaaggaaggacttgag 300
Query: 310 agccaggctcgcc-gccggtgttcactgaggcc 341
||||||||||||| |||||||||||||||||||
Sbjct: 301 agccaggctcgccngccggtgttcactgaggcc 333
Score = 95.6 bits (48), Expect = 5e-018
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 538 tctatgttgtttttgacccaaagaacaagcctgattacggcaatacagctacggagtacc 597
||||| ||||||||||||||||||||||| ||||| |||||||||||| |||||||||||
Sbjct: 521 tctatattgtttttgacccaaagaacaaggctgatgacggcaatacagttacggagtacc 580
Query: 598 gtgtttca 605
|||||||
Sbjct: 581 atgtttca 588
Score = 79.8 bits (40), Expect = 3e-013
Identities = 98/114 (85%), Gaps = 5/114 (4%)
Strand = Plus / Plus
Query: 415 tattcatgaactggcaacagaagggacacgtattcctgtggaacacatgttgccagaaag 474
|||||||||| ||||||||||| | | |||| |||||||||| ||||||||||| ||||
Sbjct: 396 tattcatgaaagggcaacagaagaggcgcgtaatcctgtggaa-acatgttgcca-aaag 453
Query: 475 aggttttagtttgtctgtttgttggccctgtgtgtaatgttcataaacgatata 528
||||||||||| || ||||||| | | ||||||||||||||||||||||||
Sbjct: 454 aggttttagttggtttgtttgt---ctgtttgtgtaatgttcataaacgatata 504
>gb|CD232716.1|CD232716 SS1_1_H12.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_1_H12_A012 3', mRNA sequence
Length = 559
Score = 539 bits (272), Expect = e-151
Identities = 317/332 (95%)
Strand = Plus / Plus
Query: 10 cgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggcggagctgga 69
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct: 1 cgacaggctcaaggagatcatcaagtacaaggggttccaggtgccgccggccgagctcga 60
Query: 70 ggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgtatcaatgaacgatga 129
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 61 ggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgtgtcaatgaaggatga 120
Query: 130 ccttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggttctcaagtcaccga 189
|||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 121 tcttgctggtgaaattccggtcgccttcatcgtgcggaccgaaggctctgaagtcaccga 180
Query: 190 ggatgagatcaagcaattcgtcgccaaggaggtggttttctacaagaagatccacaaggt 249
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gggtgagatcaagcaatttgtcgccaaggaggtggttttctacaagaagatccacaaggt 240
Query: 250 cttcttcaccgaatccatccccaagaacccgtcgggcaagatcctgaggaaggacttgag 309
|||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 241 tttcttcactgaatccatccccaagaacccgtccggcaagatcctaaggaaggacttgag 300
Query: 310 agccaggctcgccgccggtgttcactgaggcc 341
||||||||||||||||||||||||||||||||
Sbjct: 301 agccaggctcgccgccggtgttcactgaggcc 332
Score = 87.7 bits (44), Expect = 1e-015
Identities = 144/172 (83%), Gaps = 9/172 (5%)
Strand = Plus / Plus
Query: 415 tattcatgaactggcaacagaagggacacgtattcctgtggaacacatgttgccagaaag 474
|||||||||| ||||||||||| | | |||| |||||||||| ||||||||||| ||||
Sbjct: 394 tattcatgaaagggcaacagaagaggcgcgtaatcctgtggaa-acatgttgcca-aaag 451
Query: 475 aggttttagtttgtctgtttgttggccctgtgtgtaatgttcataaacgatataga---c 531
||||||||||| || ||||||| | | |||||||||||||||||||||||| |
Sbjct: 452 aggttttagttcgtttgtttgt---ctgtttgtgtaatgttcataaacgatatatatata 508
Query: 532 gtcgtctctatgttgtttttgacccaaagaacaagcctgattacggcaatac 583
| || ||||| || |||||||||||||||||||| ||||| ||||||||||
Sbjct: 509 gatgtatctatatt-tttttgacccaaagaacaaggctgatgacggcaatac 559
>gb|CW194291.1|CW194291 104_617_11180020_116_36786_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11180020, DNA
sequence
Length = 688
Score = 212 bits (107), Expect = 3e-053
Identities = 119/123 (96%)
Strand = Plus / Minus
Query: 219 aggtggttttctacaagaagatccacaaggtcttcttcaccgaatccatccccaagaacc 278
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 278 aggtggttttctacaagaagatccacaaggttttcttcactgaatccatccccaagaacc 219
Query: 279 cgtcgggcaagatcctgaggaaggacttgagagccaggctcgccgccggtgttcactgag 338
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 cgtccggcaagatcctaaggaaggacttgagagccaggctcgccgccggtgttcactgag 159
Query: 339 gcc 341
|||
Sbjct: 158 gcc 156
Score = 168 bits (85), Expect = 4e-040
Identities = 100/105 (95%)
Strand = Plus / Minus
Query: 118 aatgaacgatgaccttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggttc 177
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 553 aatgaaggatgatcttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggctc 494
Query: 178 tcaagtcaccgaggatgagatcaagcaattcgtcgccaaggaggt 222
| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 493 tgaagtcaccgaggatgagatcaagcaatttgtcgccaaggaggt 449
Score = 71.9 bits (36), Expect = 7e-011
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 79 catcacgcacccggagatcaaggacgccgccgtcgt 114
||||||||||||||||||||||||||||||||||||
Sbjct: 688 catcacgcacccggagatcaaggacgccgccgtcgt 653
Score = 67.9 bits (34), Expect = 1e-009
Identities = 72/82 (87%), Gaps = 2/82 (2%)
Strand = Plus / Minus
Query: 415 tattcatgaactggcaacagaagggacacgtattcctgtggaacacatgttgccagaaag 474
|||||||||| ||||||||||| | | |||| |||||||||| ||||||||||| ||||
Sbjct: 93 tattcatgaaagggcaacagaagaggcgcgtaatcctgtggaa-acatgttgcca-aaag 36
Query: 475 aggttttagtttgtctgtttgt 496
||||||||||| || |||||||
Sbjct: 35 aggttttagttggtttgtttgt 14
>gb|CW353056.1|CW353056 fsbb001f015k03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f015k03, DNA
sequence
Length = 665
Score = 212 bits (107), Expect = 3e-053
Identities = 119/123 (96%)
Strand = Plus / Minus
Query: 219 aggtggttttctacaagaagatccacaaggtcttcttcaccgaatccatccccaagaacc 278
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 286 aggtggttttctacaagaagatccacaaggttttcttcactgaatccatccccaagaacc 227
Query: 279 cgtcgggcaagatcctgaggaaggacttgagagccaggctcgccgccggtgttcactgag 338
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 cgtccggcaagatcctaaggaaggacttgagagccaggctcgccgccggtgttcactgag 167
Query: 339 gcc 341
|||
Sbjct: 166 gcc 164
Score = 168 bits (85), Expect = 4e-040
Identities = 100/105 (95%)
Strand = Plus / Minus
Query: 118 aatgaacgatgaccttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggttc 177
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 aatgaaggatgatcttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggctc 502
Query: 178 tcaagtcaccgaggatgagatcaagcaattcgtcgccaaggaggt 222
| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 tgaagtcaccgaggatgagatcaagcaatttgtcgccaaggaggt 457
Score = 46.1 bits (23), Expect = 0.004
Identities = 62/71 (87%), Gaps = 3/71 (4%)
Strand = Plus / Minus
Query: 415 tattcatgaactggcaacagaagggacacgtattcctgtggaacacatgttgccagaaag 474
|||||||||| ||||||||||| | | |||| |||||||||| ||||||| ||| ||||
Sbjct: 101 tattcatgaaagggcaacagaagaggcgcgtaatcctgtggaa-acatgtt-cca-aaag 45
Query: 475 aggttttagtt 485
|||||||||||
Sbjct: 44 aggttttagtt 34
>gb|CW034153.1|CW034153 104_264_10502381_115_30380 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10502381, DNA
sequence
Length = 541
Score = 202 bits (102), Expect = 3e-050
Identities = 111/114 (97%)
Strand = Plus / Minus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 508 cttcatcgtcgacaggctcaaggagatcatcaagtacaaggggttccaggtgccgccggc 449
Query: 61 ggagctggaggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgt 114
||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cgagctcgaggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgt 395
Score = 168 bits (85), Expect = 4e-040
Identities = 100/105 (95%)
Strand = Plus / Minus
Query: 118 aatgaacgatgaccttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggttc 177
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 295 aatgaaggatgatcttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggctc 236
Query: 178 tcaagtcaccgaggatgagatcaagcaattcgtcgccaaggaggt 222
| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 235 tgaagtcaccgaggatgagatcaagcaatttgtcgccaaggaggt 191
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 219 aggtggttttctacaagaag 238
||||||||||||||||||||
Sbjct: 20 aggtggttttctacaagaag 1
>gb|CW134050.1|CW134050 104_518_11117099_148_34816_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11117099, DNA
sequence
Length = 664
Score = 202 bits (102), Expect = 3e-050
Identities = 111/114 (97%)
Strand = Plus / Minus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 446 cttcatcgtcgacaggctcaaggagatcatcaagtacaaggggttccaggtgccgccggc 387
Query: 61 ggagctggaggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgt 114
||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 cgagctcgaggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgt 333
Score = 168 bits (85), Expect = 4e-040
Identities = 100/105 (95%)
Strand = Plus / Minus
Query: 118 aatgaacgatgaccttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggttc 177
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 233 aatgaaggatgatcttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggctc 174
Query: 178 tcaagtcaccgaggatgagatcaagcaattcgtcgccaaggaggt 222
| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 173 tgaagtcaccgaggatgagatcaagcaatttgtcgccaaggaggt 129
>gb|CW194292.1|CW194292 104_617_11180020_148_36790_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11180020, DNA
sequence
Length = 721
Score = 202 bits (102), Expect = 3e-050
Identities = 111/114 (97%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 97 cttcatcgtcgacaggctcaaggagatcatcaagtacaaggggttccaggtgccgccggc 156
Query: 61 ggagctggaggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgt 114
||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 cgagctcgaggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgt 210
Score = 196 bits (99), Expect = 2e-048
Identities = 117/123 (95%)
Strand = Plus / Plus
Query: 219 aggtggttttctacaagaagatccacaaggtcttcttcaccgaatccatccccaagaacc 278
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 585 aggtggttttctacaagaagatccacaaggttttcttcactgaatccatccccaagaacc 644
Query: 279 cgtcgggcaagatcctgaggaaggacttgagagccaggctcgccgccggtgttcactgag 338
|||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 645 cgtccggcaagatcctaaggaaggacttgagagccaggctcgcccgcggtgttcactgag 704
Query: 339 gcc 341
|||
Sbjct: 705 gcc 707
Score = 168 bits (85), Expect = 4e-040
Identities = 100/105 (95%)
Strand = Plus / Plus
Query: 118 aatgaacgatgaccttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggttc 177
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 310 aatgaaggatgatcttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggctc 369
Query: 178 tcaagtcaccgaggatgagatcaagcaattcgtcgccaaggaggt 222
| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 370 tgaagtcaccgaggatgagatcaagcaatttgtcgccaaggaggt 414
>gb|BZ629316.1|BZ629316 ih65e07.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih65e07 5', DNA sequence
Length = 668
Score = 87.7 bits (44), Expect = 1e-015
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
||||||||||||| || |||||||| |||||||||||||||||||||||||| | || ||
Sbjct: 190 cttcatcgtcgaccggatcaaggagctcatcaagtacaagggcttccaggtggcccctgc 249
Query: 61 ggagctggaggc 72
|||||||||||
Sbjct: 250 cgagctggaggc 261
>gb|CW071495.1|CW071495 104_323_10591543_114_30471 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10591543, DNA
sequence
Length = 740
Score = 87.7 bits (44), Expect = 1e-015
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
||||||||||||||||||||||||| |||||||||||||||| ||||| || | |||||
Sbjct: 518 cttcatcgtcgacaggctcaaggagctcatcaagtacaaggggttccaagtcgctccggc 577
Query: 61 ggagctggaggc 72
|||||| |||||
Sbjct: 578 ggagctcgaggc 589
>gb|CW077966.1|CW077966 104_386_10894698_116_31912_378 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10894698, DNA
sequence
Length = 739
Score = 87.7 bits (44), Expect = 1e-015
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
||||||||||||||||||||||||| |||||||||||||||| ||||| || | |||||
Sbjct: 582 cttcatcgtcgacaggctcaaggagctcatcaagtacaaggggttccaagtcgctccggc 641
Query: 61 ggagctggaggc 72
|||||| |||||
Sbjct: 642 ggagctcgaggc 653
>gb|CW077967.1|CW077967 104_386_10894698_148_31911_378 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10894698, DNA
sequence
Length = 748
Score = 87.7 bits (44), Expect = 1e-015
Identities = 65/72 (90%)
Strand = Plus / Minus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
||||||||||||||||||||||||| |||||||||||||||| ||||| || | |||||
Sbjct: 296 cttcatcgtcgacaggctcaaggagctcatcaagtacaaggggttccaagtcgctccggc 237
Query: 61 ggagctggaggc 72
|||||| |||||
Sbjct: 236 ggagctcgaggc 225
>gb|CW078695.1|CW078695 104_396_10898313_114_31923_153 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10898313, DNA
sequence
Length = 767
Score = 87.7 bits (44), Expect = 1e-015
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
||||||||||||| || |||||||| |||||||||||||||||||||||||| | || ||
Sbjct: 347 cttcatcgtcgaccggatcaaggagctcatcaagtacaagggcttccaggtggcccctgc 406
Query: 61 ggagctggaggc 72
|||||||||||
Sbjct: 407 cgagctggaggc 418
>gb|CW128046.1|CW128046 104_509_11113781_116_34744_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11113781, DNA
sequence
Length = 650
Score = 87.7 bits (44), Expect = 1e-015
Identities = 65/72 (90%)
Strand = Plus / Minus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
||||||||||||||||||||||||| |||||||||||||||| ||||| || | |||||
Sbjct: 552 cttcatcgtcgacaggctcaaggagctcatcaagtacaaggggttccaagtcgctccggc 493
Query: 61 ggagctggaggc 72
|||||| |||||
Sbjct: 492 ggagctcgaggc 481
Score = 48.1 bits (24), Expect = 0.001
Identities = 60/72 (83%)
Strand = Plus / Minus
Query: 185 accgaggatgagatcaagcaattcgtcgccaaggaggtggttttctacaagaagatccac 244
|||||||| |||||||| || | ||| || || ||||||| |||||||||| | | |||
Sbjct: 258 accgaggacgagatcaaacagtacgtggcgaaacaggtggtgttctacaagaggctgcac 199
Query: 245 aaggtcttcttc 256
||||||||||||
Sbjct: 198 aaggtcttcttc 187
>gb|BI211898.1|BI211898 IP1_62_G05.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 679
Score = 87.7 bits (44), Expect = 1e-015
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
||||||||||||| || |||||||| |||||||||||||||||||||||||| | || ||
Sbjct: 117 cttcatcgtcgaccggatcaaggagctcatcaagtacaagggcttccaggtggcccctgc 176
Query: 61 ggagctggaggc 72
|||||||||||
Sbjct: 177 cgagctggaggc 188
>gb|CN129079.1|CN129079 RHOH1_33_H09.b3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_33_H09_A002 3', mRNA sequence
Length = 733
Score = 87.7 bits (44), Expect = 1e-015
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
||||||||||||||||||||||||| |||||||||||||||| ||||| || | |||||
Sbjct: 304 cttcatcgtcgacaggctcaaggagctcatcaagtacaaggggttccaagtcgctccggc 363
Query: 61 ggagctggaggc 72
|||||| |||||
Sbjct: 364 ggagctcgaggc 375
Score = 48.1 bits (24), Expect = 0.001
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 185 accgaggatgagatcaagcaattcgtcgccaaggaggtggttttctacaagaagatccac 244
|||||||| |||||||| || | ||| || || ||||||| |||||||||| | | |||
Sbjct: 488 accgaggacgagatcaaacagtacgtggcgaaacaggtggtgttctacaagaggctgcac 547
Query: 245 aaggtcttcttc 256
||||||||||||
Sbjct: 548 aaggtcttcttc 559
>gb|CD235658.1|CD235658 SS1_37_F06.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_37_F06_A012 3', mRNA sequence
Length = 515
Score = 81.8 bits (41), Expect = 7e-014
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 18 tcaaggagatcatcaagtacaagggcttccaggtgccgccggcggagctggaggcgctcc 77
|||||||| ||||||||| |||||||||||||||||||||||| ||||| ||||| || |
Sbjct: 1 tcaaggagctcatcaagttcaagggcttccaggtgccgccggccgagctcgaggctctgc 60
Query: 78 tcatc 82
|||||
Sbjct: 61 tcatc 65
Score = 56.0 bits (28), Expect = 4e-006
Identities = 91/112 (81%)
Strand = Plus / Plus
Query: 188 gaggatgagatcaagcaattcgtcgccaaggaggtggttttctacaagaagatccacaag 247
||||||| |||||| | |||||| ||||| ||||||| |||||||||| | | ||||||
Sbjct: 171 gaggatgccatcaaggagttcgtctccaagcaggtggtgttctacaagaggctacacaag 230
Query: 248 gtcttcttcaccgaatccatccccaagaacccgtcgggcaagatcctgagga 299
|| | ||||||| |||||||||||| |||| || |||||||||||||
Sbjct: 231 gtgtacttcaccccctccatccccaagtcggcgtccgggaagatcctgagga 282
>gb|CW073480.1|CW073480 104_335_10779929_114_31363_329 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10779929, DNA
sequence
Length = 743
Score = 75.8 bits (38), Expect = 4e-012
Identities = 77/90 (85%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||||||||||||||| ||||||||||| ||||||||||| |||||||| | || ||
Sbjct: 92 cttcatcgtcgacaggcttaaggagatcataaagtacaagggtctccaggtggcccctgc 151
Query: 61 ggagctggaggcgctcctcatcacgcaccc 90
||| | ||||| || |||||||| |||||
Sbjct: 152 agagatagaggccctgctcatcacccaccc 181
>gb|CW345534.1|CW345534 104_848_11488543_148_36210_022 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11488543, DNA
sequence
Length = 632
Score = 75.8 bits (38), Expect = 4e-012
Identities = 77/90 (85%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||||||||||||||| ||||||||||| ||||||||||| |||||||| | || ||
Sbjct: 113 cttcatcgtcgacaggcttaaggagatcataaagtacaagggtctccaggtggcccctgc 172
Query: 61 ggagctggaggcgctcctcatcacgcaccc 90
||| | ||||| || |||||||| |||||
Sbjct: 173 agagatagaggccctgctcatcacccaccc 202
>gb|BE597274.1|BE597274 PI1_70_C05.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 644
Score = 75.8 bits (38), Expect = 4e-012
Identities = 77/90 (85%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||||||||||||||| ||||||||||| ||||||||||| |||||||| | || ||
Sbjct: 320 cttcatcgtcgacaggcttaaggagatcataaagtacaagggtctccaggtggcccctgc 379
Query: 61 ggagctggaggcgctcctcatcacgcaccc 90
||| | ||||| || |||||||| |||||
Sbjct: 380 agagatagaggccctgctcatcacccaccc 409
>gb|CD229384.1|CD229384 CCC1_15_E01.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_15_E01_A007 3', mRNA sequence
Length = 613
Score = 75.8 bits (38), Expect = 4e-012
Identities = 77/90 (85%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||||||||||||||| ||||||||||| ||||||||||| |||||||| | || ||
Sbjct: 282 cttcatcgtcgacaggcttaaggagatcataaagtacaagggtctccaggtggcccctgc 341
Query: 61 ggagctggaggcgctcctcatcacgcaccc 90
||| | ||||| || |||||||| |||||
Sbjct: 342 agagatagaggccctgctcatcacccaccc 371
>gb|CD429206.1|CD429206 ETH1_3_C09.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_3_C09_A002 3', mRNA sequence
Length = 652
Score = 75.8 bits (38), Expect = 4e-012
Identities = 77/90 (85%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||||||||||||||| ||||||||||| ||||||||||| |||||||| | || ||
Sbjct: 121 cttcatcgtcgacaggcttaaggagatcataaagtacaagggtctccaggtggcccctgc 180
Query: 61 ggagctggaggcgctcctcatcacgcaccc 90
||| | ||||| || |||||||| |||||
Sbjct: 181 agagatagaggccctgctcatcacccaccc 210
>gb|CN129749.1|CN129749 RHOH1_37_E03.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_37_E03_A002 3', mRNA sequence
Length = 850
Score = 75.8 bits (38), Expect = 4e-012
Identities = 77/90 (85%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||||||||||||||| ||||||||||| ||||||||||| |||||||| | || ||
Sbjct: 514 cttcatcgtcgacaggcttaaggagatcataaagtacaagggtctccaggtggcccctgc 573
Query: 61 ggagctggaggcgctcctcatcacgcaccc 90
||| | ||||| || |||||||| |||||
Sbjct: 574 agagatagaggccctgctcatcacccaccc 603
>gb|CW208270.1|CW208270 104_637_11188585_116_37043_003 Sorghum methylation filtered
library (LibID: 104) Sorghum bicolor genomic clone
11188585, DNA sequence
Length = 625
Score = 69.9 bits (35), Expect = 3e-010
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 18 tcaaggagatcatcaagtacaagggcttccaggtgccgccggcggagctggaggc 72
|||||||| |||||||||||||||||||||||||| | || || |||||||||||
Sbjct: 2 tcaaggagctcatcaagtacaagggcttccaggtggcccctgccgagctggaggc 56
>gb|CW362994.1|CW362994 fsbb001f034f02k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f034f02, DNA
sequence
Length = 687
Score = 69.9 bits (35), Expect = 3e-010
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 6 tcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggcggagc 65
|||||||| || |||||||| ||||||||||||||||||||||||| | || || ||||
Sbjct: 230 tcgtcgaccggatcaaggagctcatcaagtacaagggcttccaggttgctcctgccgagc 171
Query: 66 tggaggc 72
|||||||
Sbjct: 170 tggaggc 164
>gb|CW222301.1|CW222301 104_657_11202303_148_37174_052 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11202303, DNA
sequence
Length = 690
Score = 67.9 bits (34), Expect = 1e-009
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaaggg 42
|||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 604 cttcatcgtcgacaggcttaaggagatcataaagtacaaggg 645
>gb|CL190993.1|CL190993 104_409_10906471_114_32488_022 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10906471, DNA
sequence
Length = 759
Score = 63.9 bits (32), Expect = 2e-008
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 2 ttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggcg 61
||||| || ||||||||||||||||| ||||| |||||||||||||| || || || |||
Sbjct: 469 ttcattgttgacaggctcaaggagataatcaaatacaagggcttccaagtacctcctgcg 410
Query: 62 gagctggaggcgctcctcat 81
|| || ||||| || |||||
Sbjct: 409 gaacttgaggcccttctcat 390
>gb|CL190994.1|CL190994 104_409_10906471_116_32496_022 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10906471, DNA
sequence
Length = 737
Score = 63.9 bits (32), Expect = 2e-008
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 2 ttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggcg 61
||||| || ||||||||||||||||| ||||| |||||||||||||| || || || |||
Sbjct: 615 ttcattgttgacaggctcaaggagataatcaaatacaagggcttccaagtacctcctgcg 674
Query: 62 gagctggaggcgctcctcat 81
|| || ||||| || |||||
Sbjct: 675 gaacttgaggcccttctcat 694
>gb|CW331181.1|CW331181 104_828_11480770_148_36025_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480770, DNA
sequence
Length = 694
Score = 63.9 bits (32), Expect = 2e-008
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 2 ttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggcg 61
||||| || ||||||||||||||||| ||||| |||||||||||||| || || || |||
Sbjct: 210 ttcattgttgacaggctcaaggagataatcaaatacaagggcttccaagtacctcctgcg 269
Query: 62 gagctggaggcgctcctcat 81
|| || ||||| || |||||
Sbjct: 270 gaacttgaggcccttctcat 289
>gb|CW426309.1|CW426309 fsbb001f137k03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f137k03, DNA
sequence
Length = 479
Score = 63.9 bits (32), Expect = 2e-008
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtg 52
||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct: 244 cttcatcgtcgacaggcctaaggagatcataaagtacaagggtctccaggtg 193
>gb|CW493569.1|CW493569 fsbb001f284g08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f284g08, DNA
sequence
Length = 724
Score = 63.9 bits (32), Expect = 2e-008
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 2 ttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggcg 61
||||| || ||||||||||||||||| ||||| |||||||||||||| || || || |||
Sbjct: 687 ttcattgttgacaggctcaaggagataatcaaatacaagggcttccaagtacctcctgcg 628
Query: 62 gagctggaggcgctcctcat 81
|| || ||||| || |||||
Sbjct: 627 gaacttgaggcccttctcat 608
>gb|CW380206.1|CW380206 fsbb001f059o07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f059o07, DNA
sequence
Length = 683
Score = 61.9 bits (31), Expect = 7e-008
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggt 51
||||||||||||| | |||||||| ||||||||| |||||||||||||||
Sbjct: 246 cttcatcgtcgaccgcgtcaaggagctcatcaagttcaagggcttccaggt 196
Score = 40.1 bits (20), Expect = 0.24
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 47 caggtgccgccggcggagctggaggcgctcctcatc 82
|||||||||||||| ||||| ||||| || ||||||
Sbjct: 87 caggtgccgccggccgagctcgaggctctgctcatc 52
>gb|CN145355.1|CN145355 WOUND1_28_A03.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_28_A03_A002 5', mRNA sequence
Length = 682
Score = 61.9 bits (31), Expect = 7e-008
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 2 ttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttcca 48
||||| || ||||||||||||||||| ||||| ||||||||||||||
Sbjct: 441 ttcattgttgacaggctcaaggagataatcaaatacaagggcttcca 487
>gb|CW471409.1|CW471409 fsbb001f225e14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f225e14, DNA
sequence
Length = 182
Score = 60.0 bits (30), Expect = 3e-007
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaaggg 42
|||||||| ||||||||||| |||| ||||||||||||||||
Sbjct: 136 cttcatcggcgacaggctcagggagctcatcaagtacaaggg 177
>gb|CX606247.1|CX606247 ANR1_2_A04.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_2_A04_A002 3', mRNA sequence
Length = 632
Score = 60.0 bits (30), Expect = 3e-007
Identities = 78/94 (82%)
Strand = Plus / Plus
Query: 4 catcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggcgga 63
|||||||||| | ||||||||| |||||||| ||| ||||| || || | ||||||||
Sbjct: 230 catcgtcgaccgcctcaaggagctcatcaagaccaaaggctttcaagtcgcaccggcgga 289
Query: 64 gctggaggcgctcctcatcacgcacccggagatc 97
|||||||||| |||| | ||||||||| |||||
Sbjct: 290 gctggaggcgatcctgctgacgcacccgaagatc 323
>gb|CW134046.1|CW134046 104_518_11117097_148_34816_045 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11117097, DNA
sequence
Length = 82
Score = 52.0 bits (26), Expect = 6e-005
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 193 tgagatcaagcaattcgtcgccaaggaggt 222
||||||||||||||| ||||||||||||||
Sbjct: 82 tgagatcaagcaatttgtcgccaaggaggt 53
>gb|CW361238.1|CW361238 fsbb001f029k23k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f029k23, DNA
sequence
Length = 594
Score = 48.1 bits (24), Expect = 0.001
Identities = 60/72 (83%)
Strand = Plus / Minus
Query: 185 accgaggatgagatcaagcaattcgtcgccaaggaggtggttttctacaagaagatccac 244
|||||||| |||||||| || | ||| || || ||||||| |||||||||| | | |||
Sbjct: 380 accgaggacgagatcaaacagtacgtggcgaaacaggtggtgttctacaagaggctgcac 321
Query: 245 aaggtcttcttc 256
||||||||||||
Sbjct: 320 aaggtcttcttc 309
>gb|AI724956.1|AI724956 RHIZ1_31_H10.y3_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 373
Score = 48.1 bits (24), Expect = 0.001
Identities = 90/112 (80%)
Strand = Plus / Plus
Query: 188 gaggatgagatcaagcaattcgtcgccaaggaggtggttttctacaagaagatccacaag 247
||||||| |||||| | ||| || ||||| ||||||| |||||||||| | | ||||||
Sbjct: 23 gaggatgccatcaaggagttcatctccaagcaggtggtgttctacaagaggctacacaag 82
Query: 248 gtcttcttcaccgaatccatccccaagaacccgtcgggcaagatcctgagga 299
|| | ||||||| |||||||||||| |||| || |||||||||||||
Sbjct: 83 gtgtacttcaccccctccatccccaagtcggcgtccgggaagatcctgagga 134
>gb|CW029877.1|CW029877 104_257_10499927_116_30402 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10499927, DNA
sequence
Length = 812
Score = 46.1 bits (23), Expect = 0.004
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 269 cccaagaacccgtcgggcaagatcctgaggaagga 303
||||||||| |||| |||||||| |||||||||||
Sbjct: 266 cccaagaacgcgtccggcaagatactgaggaagga 232
>gb|CW060766.1|CW060766 104_304_10520036_114_30143 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10520036, DNA
sequence
Length = 648
Score = 46.1 bits (23), Expect = 0.004
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 269 cccaagaacccgtcgggcaagatcctgaggaagga 303
||||||||| |||| |||||||| |||||||||||
Sbjct: 501 cccaagaacgcgtccggcaagatactgaggaagga 467
>gb|CW086531.1|CW086531 104_430_10947042_116_33018_071 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10947042, DNA
sequence
Length = 666
Score = 46.1 bits (23), Expect = 0.004
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 269 cccaagaacccgtcgggcaagatcctgaggaagga 303
||||||||| |||| |||||||| |||||||||||
Sbjct: 311 cccaagaacgcgtccggcaagatactgaggaagga 345
>gb|CW327532.1|CW327532 104_823_11478800_116_35982_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11478800, DNA
sequence
Length = 686
Score = 46.1 bits (23), Expect = 0.004
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 269 cccaagaacccgtcgggcaagatcctgaggaagga 303
||||||||| |||| |||||||| |||||||||||
Sbjct: 495 cccaagaacgcgtccggcaagatactgaggaagga 529
>gb|CW327533.1|CW327533 104_823_11478800_148_35981_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11478800, DNA
sequence
Length = 693
Score = 46.1 bits (23), Expect = 0.004
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 269 cccaagaacccgtcgggcaagatcctgaggaagga 303
||||||||| |||| |||||||| |||||||||||
Sbjct: 563 cccaagaacgcgtccggcaagatactgaggaagga 529
>gb|CW327562.1|CW327562 104_823_11478815_116_35979_092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11478815, DNA
sequence
Length = 684
Score = 46.1 bits (23), Expect = 0.004
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 269 cccaagaacccgtcgggcaagatcctgaggaagga 303
||||||||| |||| |||||||| |||||||||||
Sbjct: 312 cccaagaacgcgtccggcaagatactgaggaagga 278
>gb|CW327563.1|CW327563 104_823_11478815_148_35980_092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11478815, DNA
sequence
Length = 651
Score = 46.1 bits (23), Expect = 0.004
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 269 cccaagaacccgtcgggcaagatcctgaggaagga 303
||||||||| |||| |||||||| |||||||||||
Sbjct: 378 cccaagaacgcgtccggcaagatactgaggaagga 412
>gb|CN127673.1|CN127673 RHOH1_24_H12.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_24_H12_A002 3', mRNA sequence
Length = 759
Score = 46.1 bits (23), Expect = 0.004
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 269 cccaagaacccgtcgggcaagatcctgaggaagga 303
||||||||| |||| |||||||| |||||||||||
Sbjct: 392 cccaagaacgcgtccggcaagatactgaggaagga 426
>gb|CW071497.1|CW071497 104_323_10591543_116_30454 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10591543, DNA
sequence
Length = 693
Score = 44.1 bits (22), Expect = 0.016
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 219 aggtggttttctacaagaagatccacaaggtcttcttc 256
||||||| |||||||||| | | |||||||||||||||
Sbjct: 670 aggtggtgttctacaagaggctgcacaaggtcttcttc 633
>gb|CW146571.1|CW146571 104_539_11139064_116_34991_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11139064, DNA
sequence
Length = 696
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 11 gacaggctcaaggagatcatcaagtacaagggct 44
|||||||| || ||| ||||||||||||||||||
Sbjct: 474 gacaggctgaaagagctcatcaagtacaagggct 441
>gb|CW229009.1|CW229009 104_670_11207076_148_37261_046 Sorghum methylation filtered
library (LibID: 104) Sorghum bicolor genomic clone
11207076, DNA sequence
Length = 610
Score = 42.1 bits (21), Expect = 0.061
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 cgccggcggagctggaggcgc 74
|||||||||||||||||||||
Sbjct: 68 cgccggcggagctggaggcgc 88
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 203,641
Number of Sequences: 832831
Number of extensions: 203641
Number of successful extensions: 55914
Number of sequences better than 0.5: 69
Number of HSP's better than 0.5 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55757
Number of HSP's gapped (non-prelim): 149
length of query: 638
length of database: 491,359,669
effective HSP length: 19
effective length of query: 619
effective length of database: 475,535,880
effective search space: 294356709720
effective search space used: 294356709720
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)