BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3071507.2.1
(921 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX622493.1|CX622493 GABR1_64_G03.b2_A002 GA- or brassino... 793 0.0
gb|BF587706.1|BF587706 FM1_39_F09.g1_A003 Floral-Induced Me... 712 0.0
gb|BG159378.1|BG159378 OV2_7_A11.g1_A002 Ovary 2 (OV2) Sorg... 628 e-178
gb|CN143114.1|CN143114 WOUND1_14_E12.b1_A002 Wounded leaves... 620 e-176
gb|BG559907.1|BG559907 RHIZ2_75_B06.g1_A003 Rhizome2 (RHIZ2... 618 e-175
gb|CX622436.1|CX622436 GABR1_64_A04.b2_A002 GA- or brassino... 617 e-175
gb|CD229956.1|CD229956 SS1_40_H11.b1_A012 Salt-stressed see... 611 e-173
gb|BG355941.2|BG355941 EM1_18_E06.g1_A002 Embryo 1 (EM1) So... 577 e-163
gb|CX614740.1|CX614740 GABR1_16_B02.b1_A002 GA- or brassino... 573 e-161
gb|CN148699.1|CN148699 WOUND1_58_F02.b1_A002 Wounded leaves... 565 e-159
gb|BG241324.1|BG241324 RHIZ2_49_A04.g1_A003 Rhizome2 (RHIZ2... 504 e-141
gb|BG466123.1|BG466123 RHIZ2_48_H07.g1_A003 Rhizome2 (RHIZ2... 502 e-140
gb|BI075108.1|BI075108 IP1_19_G01.g1_A002 Immature pannicle... 500 e-139
gb|BM328692.1|BM328692 PIC1_25_D10.g1_A002 Pathogen-infecte... 444 e-123
gb|BG465898.1|BG465898 RHIZ2_46_A02.g1_A003 Rhizome2 (RHIZ2... 416 e-114
gb|CD462540.1|CD462540 ETH1_38_C08.b1_A002 Ethylene-treated... 369 e-100
gb|CW406042.1|CW406042 fsbb001f098n24k0 Sorghum methylation... 341 7e-092
gb|CW406041.1|CW406041 fsbb001f098n24f0 Sorghum methylation... 313 2e-083
gb|CW111668.1|CW111668 104_485_11104448_116_34540_030 Sorgh... 303 2e-080
gb|CD428180.1|CD428180 ETH1_28_C02.b1_A002 Ethylene-treated... 297 9e-079
gb|BG159605.1|BG159605 OV2_6_G01.b1_A002 Ovary 2 (OV2) Sorg... 270 2e-070
gb|CF431001.1|CF431001 NIT1_4_D08.b1_A002 Nitrogen-deficien... 270 2e-070
gb|CX608350.1|CX608350 ANR1_38_C09.b1_A002 Anaerobic roots ... 270 2e-070
gb|CF430956.1|CF430956 NIT1_4_F06.b1_A002 Nitrogen-deficien... 258 8e-067
gb|CF432804.1|CF432804 NIT1_19_E10.b1_A002 Nitrogen-deficie... 258 8e-067
gb|CN134387.1|CN134387 OX1_26_C04.b1_A002 Oxidatively-stres... 252 5e-065
gb|CW122627.1|CW122627 104_501_11110773_116_34677_085 Sorgh... 244 1e-062
gb|CW465934.1|CW465934 fsbb001f216o21k0 Sorghum methylation... 244 1e-062
gb|CX614809.1|CX614809 GABR1_16_B02.g1_A002 GA- or brassino... 242 5e-062
gb|CN137545.1|CN137545 OX1_58_B04.b1_A002 Oxidatively-stres... 240 2e-061
gb|CF429876.1|CF429876 PH1_25_A07.b1_A002 Phosphorous-defic... 236 3e-060
gb|BM324190.1|BM324190 PIC1_25_D10.b1_A002 Pathogen-infecte... 226 3e-057
gb|CX622516.1|CX622516 GABR1_64_A04.g2_A002 GA- or brassino... 226 3e-057
gb|CF431564.1|CF431564 NIT1_8_B02.b1_A002 Nitrogen-deficien... 214 1e-053
gb|CW409779.1|CW409779 fsbb001f104d18f0 Sorghum methylation... 212 4e-053
gb|CN148779.1|CN148779 WOUND1_58_F02.g1_A002 Wounded leaves... 190 2e-046
gb|BZ422560.1|BZ422560 id55d04.b1 WGS-SbicolorF (DH5a methy... 188 6e-046
gb|CL196288.1|CL196288 104_422_10942954_114_32317_041 Sorgh... 188 6e-046
gb|CW027560.1|CW027560 104_254_10498588_114_30395 Sorghum m... 188 6e-046
gb|CW479571.1|CW479571 fsbb001f238c15k0 Sorghum methylation... 188 6e-046
gb|CN138126.1|CN138126 OX1_61_H04.g1_A002 Oxidatively-stres... 188 6e-046
gb|CX622583.1|CX622583 GABR1_64_G03.g2_A002 GA- or brassino... 186 2e-045
gb|CW250954.1|CW250954 104_713_11223665_148_35058_073 Sorgh... 180 2e-043
gb|CW479152.1|CW479152 fsbb001f237h02f0 Sorghum methylation... 180 2e-043
gb|BG052001.1|BG052001 RHIZ2_7_F11.g1_A003 Rhizome2 (RHIZ2)... 180 2e-043
gb|CW310289.1|CW310289 104_799_11469637_116_35745_057 Sorgh... 172 4e-041
gb|CW310290.1|CW310290 104_799_11469637_148_35749_057 Sorgh... 172 4e-041
gb|CN145887.1|CN145887 WOUND1_36_A11.b1_A002 Wounded leaves... 172 4e-041
gb|CF430017.1|CF430017 PH1_25_A07.g1_A002 Phosphorous-defic... 167 2e-039
gb|CW027561.1|CW027561 104_254_10498588_116_30396 Sorghum m... 153 3e-035
gb|CW038410.1|CW038410 104_270_10504910_115_30386 Sorghum m... 153 3e-035
gb|CN131793.1|CN131793 OX1_2_G05.b1_A002 Oxidatively-stress... 153 3e-035
gb|CN138045.1|CN138045 OX1_61_H04.b1_A002 Oxidatively-stres... 153 3e-035
gb|CN131881.1|CN131881 OX1_2_G05.g1_A002 Oxidatively-stress... 147 2e-033
gb|BM317823.1|BM317823 OV1_16_A02.b9_A002 Ovary 1 (OV1) Sor... 137 2e-030
gb|CN134840.1|CN134840 OX1_28_G06.g1_A002 Oxidatively-stres... 137 2e-030
gb|CW032099.1|CW032099 104_261_10501183_114_30363 Sorghum m... 133 3e-029
gb|CW111669.1|CW111669 104_485_11104448_148_34536_030 Sorgh... 133 3e-029
gb|CN147591.1|CN147591 WOUND1_50_E09.g1_A002 Wounded leaves... 131 1e-028
gb|CF427705.1|CF427705 PH1_10_G01.b1_A002 Phosphorous-defic... 127 2e-027
gb|CN147510.1|CN147510 WOUND1_50_E09.b1_A002 Wounded leaves... 119 5e-025
gb|CW107624.1|CW107624 104_478_11096696_148_34482_032 Sorgh... 111 1e-022
gb|CN143200.1|CN143200 WOUND1_14_E12.g1_A002 Wounded leaves... 111 1e-022
gb|CW222418.1|CW222418 104_657_11202363_148_37175_002 Sorgh... 105 7e-021
gb|CN145955.1|CN145955 WOUND1_36_A11.g1_A002 Wounded leaves... 105 7e-021
gb|CN134469.1|CN134469 OX1_26_C04.g1_A002 Oxidatively-stres... 103 3e-020
gb|CD230053.1|CD230053 SS1_40_H11.g1_A012 Salt-stressed see... 96 7e-018
gb|CD224850.1|CD224850 CCC1_36_A05.g1_A007 Callus culture/c... 94 3e-017
gb|CW038409.1|CW038409 104_270_10504910_114_30385 Sorghum m... 92 1e-016
gb|CN149616.1|CN149616 WOUND1_63_H02.g1_A002 Wounded leaves... 90 4e-016
gb|CN149533.1|CN149533 WOUND1_63_H02.b1_A002 Wounded leaves... 88 2e-015
gb|CW460719.1|CW460719 fsbb001f208a16k0 Sorghum methylation... 86 7e-015
gb|BE352999.1|BE352999 DG1_2_B06.g1_A002 Dark Grown 1 (DG1)... 86 7e-015
gb|BE357317.1|BE357317 DG1_148_G05.g1_A002 Dark Grown 1 (DG... 86 7e-015
gb|BE358141.1|BE358141 DG1_24_F08.g1_A002 Dark Grown 1 (DG1... 86 7e-015
gb|BF705012.1|BF705012 RHIZ2_1_C08.g1_A003 Rhizome2 (RHIZ2)... 86 7e-015
gb|BG102446.1|BG102446 RHIZ2_33_A08.g1_A003 Rhizome2 (RHIZ2... 86 7e-015
gb|BG357604.1|BG357604 OV2_32_A04.g1_A002 Ovary 2 (OV2) Sor... 86 7e-015
gb|BG559736.1|BG559736 RHIZ2_73_A04.g1_A003 Rhizome2 (RHIZ2... 86 7e-015
gb|BG739403.1|BG739403 EM1_82_E05.g1_A002 Embryo 1 (EM1) So... 86 7e-015
gb|CD230229.1|CD230229 SS1_42_G04.b1_A012 Salt-stressed see... 86 7e-015
gb|CD234642.1|CD234642 SS1_17_F09.b1_A012 Salt-stressed see... 86 7e-015
gb|CD234679.1|CD234679 SS1_17_E08.b1_A012 Salt-stressed see... 86 7e-015
gb|CD430130.1|CD430130 ETH1_17_H05.b1_A002 Ethylene-treated... 86 7e-015
gb|CD464100.1|CD464100 ETH1_48_B11.g1_A002 Ethylene-treated... 86 7e-015
gb|CN134090.1|CN134090 OX1_20_E03.b1_A002 Oxidatively-stres... 86 7e-015
gb|CN137709.1|CN137709 OX1_59_B11.b1_A002 Oxidatively-stres... 86 7e-015
gb|CN142753.1|CN142753 WOUND1_12_B02.b1_A002 Wounded leaves... 86 7e-015
gb|CN149190.1|CN149190 WOUND1_61_F05.b1_A002 Wounded leaves... 86 7e-015
gb|CX608992.1|CX608992 ANR1_10_A12.b1_A002 Anaerobic roots ... 86 7e-015
gb|CX609322.1|CX609322 ANR1_12_A12.b1_A002 Anaerobic roots ... 86 7e-015
gb|CX610663.1|CX610663 ANR1_20_C10.b1_A002 Anaerobic roots ... 86 7e-015
gb|CX611730.1|CX611730 ANR1_26_H06.b1_A002 Anaerobic roots ... 86 7e-015
gb|CX612403.1|CX612403 GABR1_2_F05.b1_A002 GA- or brassinol... 86 7e-015
gb|CX612412.1|CX612412 GABR1_2_G03.b1_A002 GA- or brassinol... 86 7e-015
gb|CX612747.1|CX612747 GABR1_4_F03.b1_A002 GA- or brassinol... 86 7e-015
gb|CX615244.1|CX615244 GABR1_19_B02.b1_A002 GA- or brassino... 86 7e-015
gb|CX619063.1|CX619063 GABR1_43_G04.b1_A002 GA- or brassino... 86 7e-015
gb|CX620190.1|CX620190 GABR1_50_H04.b1_A002 GA- or brassino... 86 7e-015
gb|CN151965.1|CN151965 WOUND1_78_G12.g1_A002 Wounded leaves... 84 3e-014
gb|CF487897.1|CF487897 POL1_46_C06.g1_A002 Pollen Sorghum b... 82 1e-013
gb|CW469462.1|CW469462 fsbb001f222d05k0 Sorghum methylation... 80 4e-013
gb|CD431354.1|CD431354 ETH1_8_D11.b1_A002 Ethylene-treated ... 78 2e-012
gb|CN140557.1|CN140557 OX1_45_C11.b1_A002 Oxidatively-stres... 78 2e-012
gb|CW391631.1|CW391631 fsbb001f077n22f0 Sorghum methylation... 74 3e-011
gb|CW391632.1|CW391632 fsbb001f077n22k0 Sorghum methylation... 72 1e-010
gb|CW222417.1|CW222417 104_657_11202363_116_37176_002 Sorgh... 64 2e-008
gb|CD223151.1|CD223151 CCC1_26_D08.b1_A007 Callus culture/c... 62 1e-007
gb|CW021131.1|CW021131 104_109_10409366_114_30490 Sorghum m... 60 4e-007
gb|BE598733.1|BE598733 PI1_81_A05.b1_A002 Pathogen induced ... 60 4e-007
gb|BG048260.1|BG048260 OV1_16_A02.g1_A002 Ovary 1 (OV1) Sor... 60 4e-007
gb|CF480170.1|CF480170 POL1_64_D07.b1_A002 Pollen Sorghum b... 60 4e-007
gb|CF484412.1|CF484412 POL1_25_D12.b1_A002 Pollen Sorghum b... 60 4e-007
gb|CF487816.1|CF487816 POL1_46_C06.b1_A002 Pollen Sorghum b... 60 4e-007
gb|CF757955.1|CF757955 DSAF1_25_E02.g1_A011 Drought-stresse... 60 4e-007
gb|BE593454.1|BE593454 WS1_98_A11.b1_A002 Water-stressed 1 ... 58 2e-006
gb|CD462607.1|CD462607 ETH1_38_C08.g1_A002 Ethylene-treated... 52 9e-005
gb|CN140813.1|CN140813 OX1_47_F12.b1_A002 Oxidatively-stres... 52 9e-005
gb|CN148236.1|CN148236 WOUND1_55_B09.b1_A002 Wounded leaves... 52 9e-005
gb|BG355707.2|BG355707 EM1_18_E06.b1_A002 Embryo 1 (EM1) So... 50 4e-004
gb|CW217046.1|CW217046 104_650_11195446_148_37131_093 Sorgh... 48 0.001
gb|CW243962.1|CW243962 104_704_11220332_148_37583_070 Sorgh... 48 0.001
gb|CW404465.1|CW404465 fsbb001f096j22f0 Sorghum methylation... 48 0.001
gb|CW404466.1|CW404466 fsbb001f096j22k0 Sorghum methylation... 48 0.001
gb|CD203869.1|CD203869 HS1_2_H07.b1_A012 Heat-shocked seedl... 48 0.001
gb|CD225116.1|CD225116 CCC1_38_B06.b1_A007 Callus culture/c... 48 0.001
gb|CD227113.1|CD227113 CCC1_4_B10.b1_A007 Callus culture/ce... 48 0.001
gb|CW460718.1|CW460718 fsbb001f208a16f0 Sorghum methylation... 44 0.023
gb|BE358051.1|BE358051 DG1_24_F08.b1_A002 Dark Grown 1 (DG1... 44 0.023
gb|BG053707.1|BG053707 RHIZ2_8_G08.b1_A003 Rhizome2 (RHIZ2)... 44 0.023
gb|BG357925.1|BG357925 OV2_32_A04.b1_A002 Ovary 2 (OV2) Sor... 44 0.023
gb|BG560210.1|BG560210 RHIZ2_73_A04.b1_A003 Rhizome2 (RHIZ2... 44 0.023
gb|CD430247.1|CD430247 ETH1_17_H05.g1_A002 Ethylene-treated... 44 0.023
gb|CF431166.1|CF431166 NIT1_6_H05.g1_A002 Nitrogen-deficien... 44 0.023
gb|CN137778.1|CN137778 OX1_59_B11.g1_A002 Oxidatively-stres... 44 0.023
gb|CN140627.1|CN140627 OX1_45_C11.g1_A002 Oxidatively-stres... 44 0.023
gb|CX615327.1|CX615327 GABR1_19_B02.g1_A002 GA- or brassino... 44 0.023
gb|CX620279.1|CX620279 GABR1_50_H04.g1_A002 GA- or brassino... 44 0.023
gb|CL169709.1|CL169709 104_368_10812840_116_31809_312 Sorgh... 42 0.089
gb|BF588266.1|BF588266 FM1_39_F09.b1_A003 Floral-Induced Me... 42 0.089
gb|BG465813.1|BG465813 RHIZ2_48_H07.b1_A003 Rhizome2 (RHIZ2... 42 0.089
gb|CD232208.1|CD232208 SS1_38_B01.g1_A012 Salt-stressed see... 42 0.089
gb|BG355574.2|BG355574 EM1_18_A12.b1_A002 Embryo 1 (EM1) So... 40 0.35
>gb|CX622493.1|CX622493 GABR1_64_G03.b2_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_64_G03_A002 3', mRNA sequence
Length = 746
Score = 793 bits (400), Expect = 0.0
Identities = 518/556 (93%), Gaps = 1/556 (0%)
Strand = Plus / Minus
Query: 159 tgggctctgattgaaacctttgcagccatgcctaggcggcagagccgaggctgccggcga 218
||||||| |||| |||| ||| |||||||||||| || ||||||||||||||||||||||
Sbjct: 558 tgggctccgattcaaactttt-cagccatgcctaagcagcagagccgaggctgccggcga 500
Query: 219 cgtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctccatggccgtgttga 278
|||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct: 499 cgtcgatgacgaagcggtagcgaacgtcgttcttctcgagccgctcgatcgccgtgttga 440
Query: 279 cgtagtccatcttgatgacctcgacctcggccccgatgccgtgcttccccgcgaactcga 338
||||||||||||||||||| || |||||||| |||||||||||||||||||||||||| |
Sbjct: 439 cgtagtccatcttgatgacttccacctcggcgccgatgccgtgcttccccgcgaactcaa 380
Query: 339 gcatggcctggcagtccctgacgctgccgacattgttcccagccacgcccttcccgcccg 398
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 379 gcatggcctggcagtccccgacgctgccgacgctgttcccagccacgcccttcccgcccg 320
Query: 399 gcacgatggcgtaggccggcagctcgagcggcttgctcggcgcgcccacgatcaccatct 458
||||||||||||| ||||||||||| ||||||||||||||| | ||||||| ||||||||
Sbjct: 319 gcacgatggcgtacgccggcagctctagcggcttgctcggccctcccacgaccaccatct 260
Query: 459 gccccagcggcttcagcagcgccagcagcggcgtgatcgggtgccacgccgacaccgtgt 518
|||||| ||||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct: 259 gccccaacggcttcagcagcgcaagcagtggcgtgatcgggtgccacgccgataccgtgt 200
Query: 519 cgatgatgccgtccatggtccccgtcgccgccttcatctggtcctcgtcccggctgatga 578
||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||| |
Sbjct: 199 cgatgatgccgtccatggtgcccgtcgccgccttcatctcctccgggtcccggctgatca 140
Query: 579 ggaactcgtccgcgccgaggttctcgatggcctcctggcgcttgctggcggacgtgctga 638
||||||||||||||||||| ||||||| |||||||| |||||||| |||||||||||||
Sbjct: 139 agaactcgtccgcgccgaggctctcgatcgcctcctgacgcttgctcgcggacgtgctga 80
Query: 639 tgacggtgaccttcatcccgaaggccttgccgaacttgacggcgacgtggccgaggccgc 698
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 79 tgacggtgaccttcatcccgaacgccttgccgaacttgacggcgacgtggccgaggccgc 20
Query: 699 cgaggccgacgacgcc 714
|||| |||||||||||
Sbjct: 19 cgagcccgacgacgcc 4
>gb|BF587706.1|BF587706 FM1_39_F09.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 614
Score = 712 bits (359), Expect = 0.0
Identities = 520/569 (91%), Gaps = 11/569 (1%)
Strand = Plus / Minus
Query: 73 attacatccacaaaa-ccacgacaaagcaccaactcatcaacaagcgtagaccatcattc 131
|||||| |||||||| ||||||| ||| |||||||||||||||||||| || | ||| |
Sbjct: 559 attacagccacaaaagccacgaccaagtaccaactcatcaacaagcgtcga--aacat-c 503
Query: 132 attcggtagctaacaaattattgcggctgggctctgattgaaacctttgcagccatgcct 191
||||| ||||||||||||||||| ||||| |||| || | ||| |||||||||||
Sbjct: 502 attcgctagctaacaaattattg------ggctccgatttaatctttt-cagccatgcct 450
Query: 192 aggcggcagagccgaggctgccggcgacgtcgatgacgaagcggtagcggacgtcgttct 251
| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 449 aagcagcagagccgaggctgccggcgacgtcgatgacgaagcggtagcggacgtcattct 390
Query: 252 tctcgagccgctccatggccgtgttgacgtagtccatcttgatgacctcgacctcggccc 311
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 389 tctcgagccgctccatcgccgtgttgacgtagtccatcttgatgacctccacctcggcgc 330
Query: 312 cgatgccgtgcttccccgcgaactcgagcatggcctggcagtccctgacgctgccgacat 371
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 329 cgatgccgtgcttccccgcgaactcaagcatggcctggcagtccccgacgctgccgacgc 270
Query: 372 tgttcccagccacgcccttcccgcccggcacgatggcgtaggccggcagctcgagcggct 431
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 269 tgttcccagccacgcccttcccgcccggcacgatggcgtacgccggcagctctagcggct 210
Query: 432 tgctcggcgcgcccacgatcaccatctgccccagcggcttcagcagcgccagcagcggcg 491
|||||||| | |||||||||||||||||||||| ||||||||||||||| ||||| ||||
Sbjct: 209 tgctcggccctcccacgatcaccatctgccccaacggcttcagcagcgcaagcagtggcg 150
Query: 492 tgatcgggtgccacgccgacaccgtgtcgatgatgccgtccatggtccccgtcgccgcct 551
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 149 tgatcgggtgccacgccgacaccgtgtcgatgatgccgtccatggtgcccgtcgccgcct 90
Query: 552 tcatctggtcctcgtcccggctgatgaggaactcgtccgcgccgaggttctcgatggcct 611
|||||| ||| |||||||||||| | ||||||||||||||||||| ||||||| ||||
Sbjct: 89 tcatctcctccgggtcccggctgatcaagaactcgtccgcgccgaggctctcgatcgcct 30
Query: 612 cctggcgcttgctggcggacgtgctgatg 640
|||| |||||||| |||||||||||||||
Sbjct: 29 cctgacgcttgctcgcggacgtgctgatg 1
>gb|BG159378.1|BG159378 OV2_7_A11.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 591
Score = 628 bits (317), Expect = e-178
Identities = 423/457 (92%), Gaps = 1/457 (0%)
Strand = Plus / Minus
Query: 159 tgggctctgattgaaacctttgcagccatgcctaggcggcagagccgaggctgccggcga 218
||||||| |||| |||| ||| |||||||||||| || ||||||||||||||||||||||
Sbjct: 459 tgggctccgattcaaactttt-cagccatgcctaagcagcagagccgaggctgccggcga 401
Query: 219 cgtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctccatggccgtgttga 278
|||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct: 400 cgtcgatgacgaagcggtagcgaacgtcgttcttctcgagccgctcgatcgccgtgttga 341
Query: 279 cgtagtccatcttgatgacctcgacctcggccccgatgccgtgcttccccgcgaactcga 338
||||||||||||||||||| || |||||||| |||||||||||||||||||||||||| |
Sbjct: 340 cgtagtccatcttgatgacttccacctcggcgccgatgccgtgcttccccgcgaactcaa 281
Query: 339 gcatggcctggcagtccctgacgctgccgacattgttcccagccacgcccttcccgcccg 398
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 280 gcatggcctggcagtccccgacgctgccgacgctgttcccagccacgcccttcccgcccg 221
Query: 399 gcacgatggcgtaggccggcagctcgagcggcttgctcggcgcgcccacgatcaccatct 458
||||||||||||| ||||||||||| ||||||||||||||| | ||||||| ||||||||
Sbjct: 220 gcacgatggcgtacgccggcagctctagcggcttgctcggccctcccacgaccaccatct 161
Query: 459 gccccagcggcttcagcagcgccagcagcggcgtgatcgggtgccacgccgacaccgtgt 518
|||||| ||||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct: 160 gccccaacggcttcagcagcgcaagcagtggcgtgatcgggtgccacgccgataccgtgt 101
Query: 519 cgatgatgccgtccatggtccccgtcgccgccttcatctggtcctcgtcccggctgatga 578
||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||| |
Sbjct: 100 cgatgatgccgtccatggtgcccgtcgccgccttcatctcctccgggtcccggctgatca 41
Query: 579 ggaactcgtccgcgccgaggttctcgatggcctcctg 615
||||||||||||||||||| ||||||| ||||||||
Sbjct: 40 agaactcgtccgcgccgaggctctcgatcgcctcctg 4
>gb|CN143114.1|CN143114 WOUND1_14_E12.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_14_E12_A002 3', mRNA sequence
Length = 638
Score = 620 bits (313), Expect = e-176
Identities = 422/457 (92%), Gaps = 1/457 (0%)
Strand = Plus / Minus
Query: 159 tgggctctgattgaaacctttgcagccatgcctaggcggcagagccgaggctgccggcga 218
||||||| |||| |||| ||| |||||||||||| || ||||||||||||||||||||||
Sbjct: 456 tgggctccgattcaaactttt-cagccatgcctaagcagcagagccgaggctgccggcga 398
Query: 219 cgtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctccatggccgtgttga 278
|||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct: 397 cgtcgatgacgaagcggtagcgaacgtcgttcttctcgagccgctcgatcgccgtgttga 338
Query: 279 cgtagtccatcttgatgacctcgacctcggccccgatgccgtgcttccccgcgaactcga 338
||||||||||||||||||| || |||||||| |||||||||||||||||||||||||| |
Sbjct: 337 cgtagtccatcttgatgacttccacctcggcgccgatgccgtgcttccccgcgaactcaa 278
Query: 339 gcatggcctggcagtccctgacgctgccgacattgttcccagccacgcccttcccgcccg 398
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 277 gcatggcctggcagtccccgacgctgccgacgctgttcccagccacgcccttcccgcccg 218
Query: 399 gcacgatggcgtaggccggcagctcgagcggcttgctcggcgcgcccacgatcaccatct 458
||||||||||||| | ||||||||| ||||||||||||||| | ||||||| ||||||||
Sbjct: 217 gcacgatggcgtacgacggcagctctagcggcttgctcggccctcccacgaccaccatct 158
Query: 459 gccccagcggcttcagcagcgccagcagcggcgtgatcgggtgccacgccgacaccgtgt 518
|||||| ||||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct: 157 gccccaacggcttcagcagcgcaagcagtggcgtgatcgggtgccacgccgataccgtgt 98
Query: 519 cgatgatgccgtccatggtccccgtcgccgccttcatctggtcctcgtcccggctgatga 578
||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||| |
Sbjct: 97 cgatgatgccgtccatggtgcccgtcgccgccttcatctcctccgggtcccggctgatca 38
Query: 579 ggaactcgtccgcgccgaggttctcgatggcctcctg 615
||||||||||||||||||| ||||||| ||||||||
Sbjct: 37 agaactcgtccgcgccgaggctctcgatcgcctcctg 1
>gb|BG559907.1|BG559907 RHIZ2_75_B06.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 595
Score = 618 bits (312), Expect = e-175
Identities = 446/486 (91%), Gaps = 11/486 (2%)
Strand = Plus / Minus
Query: 73 attacatccacaaaa-ccacgacaaagcaccaactcatcaacaagcgtagaccatcattc 131
|||||| |||||||| ||||||| ||| |||||||||||||||||||| || | ||| |
Sbjct: 490 attacagccacaaaagccacgaccaagtaccaactcatcaacaagcgtcga--aacat-c 434
Query: 132 attcggtagctaacaaattattgcggctgggctctgattgaaacctttgcagccatgcct 191
||||| ||||||||||||||||| ||||| |||| || | ||| |||||||||||
Sbjct: 433 attcgctagctaacaaattattg------ggctccgatttaatctttt-cagccatgcct 381
Query: 192 aggcggcagagccgaggctgccggcgacgtcgatgacgaagcggtagcggacgtcgttct 251
| || |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 380 aagcagcagagccgaggctgccggcgacgtctatgacgaagcggtagcggacgtcattct 321
Query: 252 tctcgagccgctccatggccgtgttgacgtagtccatcttgatgacctcgacctcggccc 311
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 320 tctcgagccgctccatcgccgtgttgacgtagtccatcttgatgacctccacctcggcgc 261
Query: 312 cgatgccgtgcttccccgcgaactcgagcatggcctggcagtccctgacgctgccgacat 371
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 260 cgatgccgtgcttccccgcgaactcaagcatggcctggcagtccccgacgctgccgacgc 201
Query: 372 tgttcccagccacgcccttcccgcccggcacgatggcgtaggccggcagctcgagcggct 431
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 200 tgttcccagccacgcccttcccgcccggcacgatggcgtacgccggcagctctagcggct 141
Query: 432 tgctcggcgcgcccacgatcaccatctgccccagcggcttcagcagcgccagcagcggcg 491
|||||||| | |||||||||||||||||||||| ||||||||||||||| ||||| ||||
Sbjct: 140 tgctcggccctcccacgatcaccatctgccccaacggcttcagcagcgcaagcagtggcg 81
Query: 492 tgatcgggtgccacgccgacaccgtgtcgatgatgccgtccatggtccccgtcgccgcct 551
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 80 tgatcgggtgccacgccgacaccgtgtcgatgatgccgtccatggtgcccgtcgccgcct 21
Query: 552 tcatct 557
||||||
Sbjct: 20 tcatct 15
>gb|CX622436.1|CX622436 GABR1_64_A04.b2_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_64_A04_A002 3', mRNA sequence
Length = 651
Score = 617 bits (311), Expect = e-175
Identities = 438/479 (91%), Gaps = 1/479 (0%)
Strand = Plus / Minus
Query: 159 tgggctctgattgaaacctttgcagccatgcctaggcggcagagccgaggctgccggcga 218
||||||| |||| |||| ||| |||||||||||| || ||| | ||||||||||||||||
Sbjct: 478 tgggctccgattcaaactttt-cagccatgcctaagcagcaaaaccgaggctgccggcga 420
Query: 219 cgtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctccatggccgtgttga 278
|||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct: 419 cgtcgatgacgaagcggtagcgaacgtcgttcttctcgagccgctcgatcgccgtgttga 360
Query: 279 cgtagtccatcttgatgacctcgacctcggccccgatgccgtgcttccccgcgaactcga 338
|||||||||||||||||| || |||||||| |||||||||||||||||||||||||| |
Sbjct: 359 ggtagtccatcttgatgacttccacctcggcgccgatgccgtgcttccccgcgaactcaa 300
Query: 339 gcatggcctggcagtccctgacgctgccgacattgttcccagccacgcccttcccgcccg 398
|||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||
Sbjct: 299 gcatggcctggcagtccccgacgttgccgacgctgttcccagccacgcccttcccgcccg 240
Query: 399 gcacgatggcgtaggccggcagctcgagcggcttgctcggcgcgcccacgatcaccatct 458
| ||||||||||| ||||||||||| ||||||||||||||| | ||||||| ||||||||
Sbjct: 239 ggacgatggcgtacgccggcagctctagcggcttgctcggccctcccacgaccaccatct 180
Query: 459 gccccagcggcttcagcagcgccagcagcggcgtgatcgggtgccacgccgacaccgtgt 518
|||||| ||||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct: 179 gccccaacggcttcagcagcgcaagcagtggcgtgatcgggtgccacgccgataccgtgt 120
Query: 519 cgatgatgccgtccatggtccccgtcgccgccttcatctggtcctcgtcccggctgatga 578
||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||| |
Sbjct: 119 cgatgatgccgtccatggtgcccgtcgccgccttcatctcctccgggtcccggctgatca 60
Query: 579 ggaactcgtccgcgccgaggttctcgatggcctcctggcgcttgctggcggacgtgctg 637
||||||||||||||||||| ||||||| |||||||| |||||||| ||||||||||||
Sbjct: 59 agaactcgtccgcgccgaggctctcgatcgcctcctgacgcttgctcgcggacgtgctg 1
>gb|CD229956.1|CD229956 SS1_40_H11.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_40_H11_A012 3', mRNA sequence
Length = 635
Score = 611 bits (308), Expect = e-173
Identities = 398/428 (92%), Gaps = 5/428 (1%)
Strand = Plus / Minus
Query: 130 tcattcggtagctaacaaattattgcggctgggctctgattgaaacctttgcagccatgc 189
||||||||||||||||||||||||| ||| ||||||| |||| ||||||||||| |
Sbjct: 436 tcattcggtagctaacaaattattg-----gggttctgattcaaacttttgcagccattc 382
Query: 190 ctaggcggcagagccgaggctgccggcgacgtcgatgacgaagcggtagcggacgtcgtt 249
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 ctaggcagcaaagccgaggctgccggcgacgtcgatgacgaagcggtagcggacgtcatt 322
Query: 250 cttctcgagccgctccatggccgtgttgacgtagtccatcttgatgacctcgacctcggc 309
||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 cttctcgagccgctcgatcgccgtgttgacgtagtccatcttgatgacctccacctcggc 262
Query: 310 cccgatgccgtgcttccccgcgaactcgagcatggcctggcagtccctgacgctgccgac 369
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 261 gccgatgccgtgcttccccgcgaactcaagcatggcctggcagtccccgacgctgccgac 202
Query: 370 attgttcccagccacgcccttcccgcccggcacgatggcgtaggccggcagctcgagcgg 429
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 201 gctgttcccagccacgcccttcccgcccggcacgatggcgtacgccggcagctctagcgg 142
Query: 430 cttgctcggcgcgcccacgatcaccatctgccccagcggcttcagcagcgccagcagcgg 489
|||||||||| | |||||||||||||||||||||| ||||||||||||||| ||||| ||
Sbjct: 141 cttgctcggccctcccacgatcaccatctgccccaacggcttcagcagcgcaagcagtgg 82
Query: 490 cgtgatcgggtgccacgccgacaccgtgtcgatgatgccgtccatggtccccgtcgccgc 549
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
Sbjct: 81 cgtgatcgggtgccacgccgacaccgtgtcgatgatgccgtccatggtgcccatcgccac 22
Query: 550 cttcatct 557
||||||||
Sbjct: 21 cttcatct 14
>gb|BG355941.2|BG355941 EM1_18_E06.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 635
Score = 577 bits (291), Expect = e-163
Identities = 373/399 (93%), Gaps = 1/399 (0%)
Strand = Plus / Minus
Query: 159 tgggctctgattgaaacctttgcagccatgcctaggcggcagagccgaggctgccggcga 218
||||||| |||| |||| ||| |||||||||||| || ||||||||||||||||||||||
Sbjct: 411 tgggctccgattcaaactttt-cagccatgcctaagcagcagagccgaggctgccggcga 353
Query: 219 cgtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctccatggccgtgttga 278
|||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct: 352 cgtcgatgacgaagcggtagcgaacgtcgttcttctcgagccgctcgatcgccgtgttga 293
Query: 279 cgtagtccatcttgatgacctcgacctcggccccgatgccgtgcttccccgcgaactcga 338
||||||||||||||||||| || |||||||| |||||||||||||||||||||||||| |
Sbjct: 292 cgtagtccatcttgatgacttccacctcggcgccgatgccgtgcttccccgcgaactcaa 233
Query: 339 gcatggcctggcagtccctgacgctgccgacattgttcccagccacgcccttcccgcccg 398
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 232 gcatggcctggcagtccccgacgctgccgacgctgttcccagccacgcccttcccgcccg 173
Query: 399 gcacgatggcgtaggccggcagctcgagcggcttgctcggcgcgcccacgatcaccatct 458
||||||||||||| ||||||||||| ||||||||||||||| | ||||||| ||||||||
Sbjct: 172 gcacgatggcgtacgccggcagctctagcggcttgctcggccctcccacgaccaccatct 113
Query: 459 gccccagcggcttcagcagcgccagcagcggcgtgatcgggtgccacgccgacaccgtgt 518
|||||| ||||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct: 112 gccccaacggcttcagcagcgcaagcagtggcgtgatcgggtgccacgccgataccgtgt 53
Query: 519 cgatgatgccgtccatggtccccgtcgccgccttcatct 557
||||||||||||||||||| |||||||||||||||||||
Sbjct: 52 cgatgatgccgtccatggtgcccgtcgccgccttcatct 14
>gb|CX614740.1|CX614740 GABR1_16_B02.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_16_B02_A002 3', mRNA sequence
Length = 599
Score = 573 bits (289), Expect = e-161
Identities = 386/417 (92%), Gaps = 1/417 (0%)
Strand = Plus / Minus
Query: 159 tgggctctgattgaaacctttgcagccatgcctaggcggcagagccgaggctgccggcga 218
||||||| |||| |||| ||| |||||||||||| || ||||||||||||||||||||||
Sbjct: 416 tgggctccgattcaaactttt-cagccatgcctaagcagcagagccgaggctgccggcga 358
Query: 219 cgtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctccatggccgtgttga 278
|||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct: 357 cgtcgatgacgaagcggtagcgaacgtcgttcttctcgagccgctcgatcgccgtgttga 298
Query: 279 cgtagtccatcttgatgacctcgacctcggccccgatgccgtgcttccccgcgaactcga 338
||||||||||||||||||| || |||||||| |||||||||||||||||||||||||| |
Sbjct: 297 cgtagtccatcttgatgacttccacctcggcgccgatgccgtgcttccccgcgaactcaa 238
Query: 339 gcatggcctggcagtccctgacgctgccgacattgttcccagccacgcccttcccgcccg 398
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 237 gcatggcctggcagtccccgacgctgccgacgctgttcccagccacgcccttcccgcccg 178
Query: 399 gcacgatggcgtaggccggcagctcgagcggcttgctcggcgcgcccacgatcaccatct 458
||||||||||||| ||||||||||| ||||||||||||||| | ||||||| ||||||||
Sbjct: 177 gcacgatggcgtacgccggcagctctagcggcttgctcggccctcccacgaccaccatct 118
Query: 459 gccccagcggcttcagcagcgccagcagcggcgtgatcgggtgccacgccgacaccgtgt 518
|||||| ||||||||||||||| ||||| ||||||||||||||||||||| | |||||||
Sbjct: 117 gccccaacggcttcagcagcgcaagcagtggcgtgatcgggtgccacgccaataccgtgt 58
Query: 519 cgatgatgccgtccatggtccccgtcgccgccttcatctggtcctcgtcccggctga 575
||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||
Sbjct: 57 cgatgatgccgtccatggtgcccgtcgccgccttcatctcctccgggtcccggctga 1
>gb|CN148699.1|CN148699 WOUND1_58_F02.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_58_F02_A002 3', mRNA sequence
Length = 687
Score = 565 bits (285), Expect = e-159
Identities = 394/429 (91%), Gaps = 1/429 (0%)
Strand = Plus / Minus
Query: 159 tgggctctgattgaaacctttgcagccatgcctaggcggcagagccgaggctgccggcga 218
||||||| |||| |||| ||| |||||||||||| || ||| ||||||||||||||||||
Sbjct: 464 tgggctccgattcaaactttt-cagccatgcctaagcagcaaagccgaggctgccggcga 406
Query: 219 cgtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctccatggccgtgttga 278
|||| ||||||||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct: 405 cgtcaatgacgaagcggtagcgaacgtcgttcttctcgagccgctcgatcgccgtgttga 346
Query: 279 cgtagtccatcttgatgacctcgacctcggccccgatgccgtgcttccccgcgaactcga 338
||||||||||||||||||| || |||||||| |||||||||||||||||||||||||| |
Sbjct: 345 cgtagtccatcttgatgacttccacctcggcgccgatgccgtgcttccccgcgaactcaa 286
Query: 339 gcatggcctggcagtccctgacgctgccgacattgttcccagccacgcccttcccgcccg 398
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 285 gcatggcctggcagtccccgacgctgccgacgctgttcccagccacgcccttcccgcccg 226
Query: 399 gcacgatggcgtaggccggcagctcgagcggcttgctcggcgcgcccacgatcaccatct 458
||||||||||||| ||||||||||| ||||||||||||||| | ||||||| ||||||||
Sbjct: 225 gcacgatggcgtacgccggcagctctagcggcttgctcggccctcccacgaccaccatct 166
Query: 459 gccccagcggcttcagcagcgccagcagcggcgtgatcgggtgccacgccgacaccgtgt 518
|||||| ||||||||||||||| ||||| ||||||||||||||||||||| | |||||||
Sbjct: 165 gccccaacggcttcagcagcgcaagcagtggcgtgatcgggtgccacgccaataccgtgt 106
Query: 519 cgatgatgccgtccatggtccccgtcgccgccttcatctggtcctcgtcccggctgatga 578
||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||| |
Sbjct: 105 cgatgatgccgtccatggtgcccgtcgccgccttcatctcctccgggtcccggctgatca 46
Query: 579 ggaactcgt 587
||||||||
Sbjct: 45 agaactcgt 37
Score = 81.8 bits (41), Expect = 1e-013
Identities = 41/41 (100%)
Strand = Plus / Minus
Query: 730 ctcgttgaggccgtggcgcatcatggggctgtacacggtga 770
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 41 ctcgttgaggccgtggcgcatcatggggctgtacacggtga 1
>gb|BG241324.1|BG241324 RHIZ2_49_A04.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 462
Score = 504 bits (254), Expect = e-141
Identities = 382/420 (90%), Gaps = 11/420 (2%)
Strand = Plus / Minus
Query: 73 attacatccacaaaa-ccacgacaaagcaccaactcatcaacaagcgtagaccatcattc 131
|||||| |||||||| ||||||| ||| |||||||||||||||||||| || | ||| |
Sbjct: 410 attacagccacaaaagccacgaccaagtaccaactcatcaacaagcgtcga--aacat-c 354
Query: 132 attcggtagctaacaaattattgcggctgggctctgattgaaacctttgcagccatgcct 191
||||| ||||||||||||||||| ||||| |||| || | ||| |||||||||||
Sbjct: 353 attcgctagctaacaaattattg------ggctccgatttaatctttt-cagccatgcct 301
Query: 192 aggcggcagagccgaggctgccggcgacgtcgatgacgaagcggtagcggacgtcgttct 251
| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 300 aagcagcagagccgaggctgccggcgacgtcgatgacgaagcggtagcggacgtcattct 241
Query: 252 tctcgagccgctccatggccgtgttgacgtagtccatcttgatgacctcgacctcggccc 311
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 240 tctcgagccgctccatcgccgtgttgacgtagtccatcttgatgacctccacctcggcgc 181
Query: 312 cgatgccgtgcttccccgcgaactcgagcatggcctggcagtccctgacgctgccgacat 371
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 180 cgatgccgtgcttccccgcgaactcaagcatggcctggcagtccccgacgctgccgacgc 121
Query: 372 tgttcccagccacgcccttcccgcccggcacgatggcgtaggccggcagctcgagcggct 431
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 120 tgttcccagccacgcccttcccgcccggcacgatggcgtacgccggcagctctagcggct 61
Query: 432 tgctcggcgcgcccacgatcaccatctgccccagcggcttcagcagcgccagcagcggcg 491
|||||||| | |||||||||||||||||||||| ||||||||||||||| ||||| ||||
Sbjct: 60 tgctcggccctcccacgatcaccatctgccccaacggcttcagcagcgcaagcagtggcg 1
>gb|BG466123.1|BG466123 RHIZ2_48_H07.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 473
Score = 502 bits (253), Expect = e-140
Identities = 390/431 (90%), Gaps = 11/431 (2%)
Strand = Plus / Minus
Query: 73 attacatccacaaaa-ccacgacaaagcaccaactcatcaacaagcgtagaccatcattc 131
|||||| |||||||| ||||||| ||| |||||||||||||||||||| || | ||| |
Sbjct: 421 attacagccacaaaagccacgaccaagtaccaactcatcaacaagcgtcga--aacat-c 365
Query: 132 attcggtagctaacaaattattgcggctgggctctgattgaaacctttgcagccatgcct 191
||||| ||||||||||||||||| ||||| |||| || | ||| |||||||||||
Sbjct: 364 attcgctagctaacaaattattg------ggctccgatttaatctttt-cagccatgcct 312
Query: 192 aggcggcagagccgaggctgccggcgacgtcgatgacgaagcggtagcggacgtcgttct 251
| || ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 311 aagcagcaaagccgaggctgccggcgacgtcgatgacgaagcggtagcggacgtcattct 252
Query: 252 tctcgagccgctccatggccgtgttgacgtagtccatcttgatgacctcgacctcggccc 311
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 251 tctcgagccgctccatcgccgtgttgacgtagtccatcttgatgacctccacctcggcgc 192
Query: 312 cgatgccgtgcttccccgcgaactcgagcatggcctggcagtccctgacgctgccgacat 371
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 191 cgatgccgtgcttccccgcgaactcaagcatggcctggcagtccccgacgctgccgacgc 132
Query: 372 tgttcccagccacgcccttcccgcccggcacgatggcgtaggccggcagctcgagcggct 431
|||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| |
Sbjct: 131 tgttcccagccacgcccttcccgcccgggacgatggcgtacgccggcagctctagcgggt 72
Query: 432 tgctcggcgcgcccacgatcaccatctgccccagcggcttcagcagcgccagcagcggcg 491
|||||||| | |||||||||||||||||||||| ||||||||||||||| ||||| ||||
Sbjct: 71 tgctcggccctcccacgatcaccatctgccccaacggcttcagcagcgcaagcagtggcg 12
Query: 492 tgatcgggtgc 502
|||||||||||
Sbjct: 11 tgatcgggtgc 1
>gb|BI075108.1|BI075108 IP1_19_G01.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 543
Score = 500 bits (252), Expect = e-139
Identities = 328/352 (93%), Gaps = 1/352 (0%)
Strand = Plus / Minus
Query: 159 tgggctctgattgaaacctttgcagccatgcctaggcggcagagccgaggctgccggcga 218
||||||| |||| |||| ||| |||||||||||| || ||||||||||||||||||||||
Sbjct: 354 tgggctccgattcaaactttt-cagccatgcctaagcagcagagccgaggctgccggcga 296
Query: 219 cgtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctccatggccgtgttga 278
|||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct: 295 cgtcgatgacgaagcggtagcgaacgtcgttcttctcgagccgctcgatcgccgtgttga 236
Query: 279 cgtagtccatcttgatgacctcgacctcggccccgatgccgtgcttccccgcgaactcga 338
||||||||||||||||||| || |||||||| |||||||||||||||||||||||||| |
Sbjct: 235 cgtagtccatcttgatgacttccacctcggcgccgatgccgtgcttccccgcgaactcaa 176
Query: 339 gcatggcctggcagtccctgacgctgccgacattgttcccagccacgcccttcccgcccg 398
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 175 gcatggcctggcagtccccgacgctgccgacgctgttcccagccacgcccttcccgcccg 116
Query: 399 gcacgatggcgtaggccggcagctcgagcggcttgctcggcgcgcccacgatcaccatct 458
||||||||||||| ||||||||||| ||||||||||||||| | ||||||| ||||||||
Sbjct: 115 gcacgatggcgtacgccggcagctctagcggcttgctcggccctcccacgaccaccatct 56
Query: 459 gccccagcggcttcagcagcgccagcagcggcgtgatcgggtgccacgccga 510
|||||| ||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 55 gccccaacggcttcagcagcgcaagcagtggcgtgatcgggtgccacgccga 4
>gb|BM328692.1|BM328692 PIC1_25_D10.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 555
Score = 444 bits (224), Expect = e-123
Identities = 303/328 (92%), Gaps = 1/328 (0%)
Strand = Plus / Minus
Query: 159 tgggctctgattgaaacctttgcagccatgcctaggcggcagagccgaggctgccggcga 218
||||||| |||| |||| ||| |||||||||||| || ||| ||||||||||||||||||
Sbjct: 330 tgggctccgattcaaactttt-cagccatgcctaagcagcaaagccgaggctgccggcga 272
Query: 219 cgtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctccatggccgtgttga 278
|||| ||||||||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct: 271 cgtcaatgacgaagcggtagcgaacgtcgttcttctcgagccgctcgatcgccgtgttga 212
Query: 279 cgtagtccatcttgatgacctcgacctcggccccgatgccgtgcttccccgcgaactcga 338
||||||||||||||||||| || |||||||| |||||||||||||||||||||||||| |
Sbjct: 211 cgtagtccatcttgatgacttccacctcggcgccgatgccgtgcttccccgcgaactcaa 152
Query: 339 gcatggcctggcagtccctgacgctgccgacattgttcccagccacgcccttcccgcccg 398
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 151 gcatggcctggcagtccccgacgctgccgacgctgttcccagccacgcccttcccgcccg 92
Query: 399 gcacgatggcgtaggccggcagctcgagcggcttgctcggcgcgcccacgatcaccatct 458
||||||||||||| ||||||||||| ||||||||||||||| | ||||||| ||||||||
Sbjct: 91 gcacgatggcgtacgccggcagctctagcggcttgctcggccctcccacgaccaccatct 32
Query: 459 gccccagcggcttcagcagcgccagcag 486
|||||| ||||||||||||||| |||||
Sbjct: 31 gccccaacggcttcagcagcgcaagcag 4
>gb|BG465898.1|BG465898 RHIZ2_46_A02.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 453
Score = 416 bits (210), Expect = e-114
Identities = 320/352 (90%), Gaps = 11/352 (3%)
Strand = Plus / Minus
Query: 73 attacatccacaaaa-ccacgacaaagcaccaactcatcaacaagcgtagaccatcattc 131
|||||| |||||||| ||||||| ||| |||||||||||||||||||| || | ||| |
Sbjct: 348 attacagccacaaaagccacgaccaagtaccaactcatcaacaagcgtcga--aacat-c 292
Query: 132 attcggtagctaacaaattattgcggctgggctctgattgaaacctttgcagccatgcct 191
||||| ||||||||||||||||| ||||| |||| || | ||| |||||||||||
Sbjct: 291 attcgctagctaacaaattattg------ggctccgatttaatctttt-cagccatgcct 239
Query: 192 aggcggcagagccgaggctgccggcgacgtcgatgacgaagcggtagcggacgtcgttct 251
| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 238 aagcagcagagccgaggctgccggcgacgtcgatgacgaagcggtagcggacgtcattct 179
Query: 252 tctcgagccgctccatggccgtgttgacgtagtccatcttgatgacctcgacctcggccc 311
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 178 tctcgagccgctccatcgccgtgttgacgtagtccatcttgatgacctccacctcggcgc 119
Query: 312 cgatgccgtgcttccccgcgaactcgagcatggcctggcagtccctgacgctgccgacat 371
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 118 cgatgccgtgcttccccgcgaactcaagcatggcctggcagtccccgacgctgccgacgc 59
Query: 372 tgttcccagccacgcccttcccgcccggcacgatggcgtaggccggcagctc 423
|||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 58 tgttcccagccacgcccttcccgcccggcacgatggcgtacgccggcagctc 7
>gb|CD462540.1|CD462540 ETH1_38_C08.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_38_C08_A002 3', mRNA sequence
Length = 715
Score = 369 bits (186), Expect = e-100
Identities = 468/562 (83%)
Strand = Plus / Minus
Query: 209 ctgccggcgacgtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctccatg 268
||||| ||||| || | |||||| ||||| | |||||||||| |||| ||||||||||||
Sbjct: 562 ctgccagcgacatcaacgacgaaccggtacctgacgtcgttcctctccagccgctccatg 503
Query: 269 gccgtgttgacgtagtccatcttgatgacctcgacctcggccccgatgccgtgcttcccc 328
||||||||||||||||||||| | | || ||||| || || ||||||||||| ||||
Sbjct: 502 gccgtgttgacgtagtccatcctaacgagctcgatgtccgcggtgatgccgtgctgcccc 443
Query: 329 gcgaactcgagcatggcctggcagtccctgacgctgccgacattgttcccagccacgccc 388
||||| || ||||| ||||||||||| || || || || |||||| ||||| | |
Sbjct: 442 gcgaagtccagcatcgcctggcagtcggcgatactccccactccgttcccggccacccgc 383
Query: 389 ttcccgcccggcacgatggcgtaggccggcagctcgagcggcttgctcggcgcgcccacg 448
|||||||||| | ||||||||| ||||||||||| |||||| |||| |||||||| |||
Sbjct: 382 ttcccgcccgtgatgatggcgtacgccggcagctccagcggcgtgcttggcgcgccgacg 323
Query: 449 atcaccatctgccccagcggcttcagcagcgccagcagcggcgtgatcgggtgccacgcc 508
|||||||||||||||| |||||||| ||||||||||||||| ||||||||||| |||
Sbjct: 322 atcaccatctgccccatgggcttcagtagcgccagcagcggcacgatcgggtgccccgct 263
Query: 509 gacaccgtgtcgatgatgccgtccatggtccccgtcgccgccttcatctggtcctcgtcc 568
|||||||||||||||||||||||||| || || | ||||||||||||||| || |||
Sbjct: 262 gacaccgtgtcgatgatgccgtccatcgtgcctgccgccgccttcatctgctcggtgtcg 203
Query: 569 cggctgatgaggaactcgtccgcgccgaggttctcgatggcctcctggcgcttgctggcg 628
||||||| | ||||||||| ||||| ||| |||||||||||| |||||| | |
Sbjct: 202 cggctgaccaagaactcgtcggcgccaaggcgctcgatggcctctccacgcttggcaggg 143
Query: 629 gacgtgctgatgacggtgaccttcatcccgaaggccttgccgaacttgacggcgacgtgg 688
|||| |||||| || |||||| ||||||||| |||||||||||||||||||||| ||||
Sbjct: 142 gacgagctgatcaccgtgaccgccatcccgaacgccttgccgaacttgacggcgatgtgg 83
Query: 689 ccgaggccgccgaggccgacgacgccgaggtgcttgccgggctcgttgaggccgtggcgc 748
|||||||| ||||| || |||||||||||| |||| |||||| |||||||||||| |
Sbjct: 82 ccgaggccaccgagtcccacgacgccgaggcgcttcccgggcacgttgaggccgtactcc 23
Query: 749 atcatggggctgtacacggtga 770
| ||||||||||||||| ||||
Sbjct: 22 accatggggctgtacaccgtga 1
>gb|CW406042.1|CW406042 fsbb001f098n24k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f098n24, DNA
sequence
Length = 472
Score = 341 bits (172), Expect = 7e-092
Identities = 231/248 (93%), Gaps = 2/248 (0%)
Strand = Plus / Plus
Query: 159 tgggctctgattgaaacctttgcagccatgcctaggcggcagagccgaggctgccggcga 218
||||||| |||| |||| ||| |||||||||||| || ||||||||||||||||||||||
Sbjct: 226 tgggctccgattcaaactttt-cagccatgcctaagcagcagagccgaggctgccggcga 284
Query: 219 cgtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctccatggccgtgttga 278
|||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct: 285 cgtcgatgacgaagcggtagcgaacgtcgttcttctcgagccgctcgatcgccgtgttga 344
Query: 279 cgtagtccatcttgatgacctcgacctcggccccgatgccgtgcttccccgcgaactcga 338
||||||||||||||||||| || |||||||| |||||||||||||||||||||||||| |
Sbjct: 345 cgtagtccatcttgatgacttccacctcggcgccgatgccgtgcttccccgcgaactcaa 404
Query: 339 gcatggcctggcagtccctgacgctgccgacattgttcccagccacgccctt-cccgccc 397
|||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||
Sbjct: 405 gcatggcctggcagtccccgacgctgccgacgctgttcccagccacgcccttccccgccc 464
Query: 398 ggcacgat 405
||||||||
Sbjct: 465 ggcacgat 472
>gb|CW406041.1|CW406041 fsbb001f098n24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f098n24, DNA
sequence
Length = 547
Score = 313 bits (158), Expect = 2e-083
Identities = 246/274 (89%), Gaps = 5/274 (1%)
Strand = Plus / Minus
Query: 645 tgaccttcatcccgaaggccttgccgaacttgacggcgacgtggccgaggccgccgaggc 704
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 547 tgaccttcatcccgaacgccttgccgaacttgacggcgacgtggccgaggccgccgagcc 488
Query: 705 cgacgacgccgaggtgcttgccggg-ctcgttgaggccgtggcgcatcatggggctgtac 763
|||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 487 cgacgacgcccagatgcttgccgggtctcgttgaggccgtggcgcatcatggggctgtac 428
Query: 764 acggtgacgccggcgcagagcagcggcgcggtgcggtccagcgccaagcccgtcggggac 823
||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct: 427 acggtgacgccggcgcagagcagcggcgcggtgcggtccagcgcc-aggccgtccgggac 369
Query: 824 gcggaccacagtagtgntcgctcgcgaccaggacgtcgganaatnnnnnnntggtgggcg 883
||||||||| |||||| ||| || |||| | ||||||||| ||| ||||||||
Sbjct: 368 gcggaccac-gtagtgctcgttcacgacgatgacgtcggagaatccccccttggtgggca 310
Query: 884 cgc--ncgtgcgcgtggtcgacgccgttngaggt 915
||| ||||||||| |||||||||||| |||||
Sbjct: 309 cgccgccgtgcgcgtagtcgacgccgttggaggt 276
>gb|CW111668.1|CW111668 104_485_11104448_116_34540_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11104448, DNA
sequence
Length = 221
Score = 303 bits (153), Expect = 2e-080
Identities = 204/221 (92%)
Strand = Plus / Plus
Query: 314 atgccgtgcttccccgcgaactcgagcatggcctggcagtccctgacgctgccgacattg 373
||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||
Sbjct: 1 atgccgtgcttccccgcgaactcaagcatggcctggcagtccccgacgctgccgacgctg 60
Query: 374 ttcccagccacgcccttcccgcccggcacgatggcgtaggccggcagctcgagcggcttg 433
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 61 ttcccagccacgcccttcccgcccggcacgatggcgtacgccggcagctctggcggcttg 120
Query: 434 ctcggcgcgcccacgatcaccatctgccccagcggcttcagcagcgccagcagcggcgtg 493
|||||| | ||||||| |||| ||||||||| ||||||||||| ||| ||||| ||||||
Sbjct: 121 ctcggccctcccacgaccaccttctgccccaacggcttcagcatcgcaagcagtggcgtg 180
Query: 494 atcgggtgccacgccgacaccgtgtcgatgatgccgtccat 534
||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 181 atctggtgccacgccgataccgtgtcgatgatgccgtccat 221
>gb|CD428180.1|CD428180 ETH1_28_C02.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_28_C02_A002 3', mRNA sequence
Length = 639
Score = 297 bits (150), Expect = 9e-079
Identities = 393/474 (82%)
Strand = Plus / Minus
Query: 209 ctgccggcgacgtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctccatg 268
||||| ||||| || | |||||| ||||| | |||||||||| |||| ||||||||||||
Sbjct: 474 ctgccagcgacatcaacgacgaaccggtacctgacgtcgttcctctccagccgctccatg 415
Query: 269 gccgtgttgacgtagtccatcttgatgacctcgacctcggccccgatgccgtgcttcccc 328
||||||||||||||||||||| | | || ||||| || || ||||||||||| ||||
Sbjct: 414 gccgtgttgacgtagtccatcctaacgagctcgatgtccgcggtgatgccgtgctgcccc 355
Query: 329 gcgaactcgagcatggcctggcagtccctgacgctgccgacattgttcccagccacgccc 388
||||| || ||||| ||||||||||| || || || || |||||| ||||| | |
Sbjct: 354 gcgaagtccagcatcgcctggcagtcggcgatactccccactccgttcccggccacccgc 295
Query: 389 ttcccgcccggcacgatggcgtaggccggcagctcgagcggcttgctcggcgcgcccacg 448
|||||||||| | ||||||||| ||||||||||| |||||| |||| |||||||| |||
Sbjct: 294 ttcccgcccgtgatgatggcgtacgccggcagctccagcggcgtgcttggcgcgccgacg 235
Query: 449 atcaccatctgccccagcggcttcagcagcgccagcagcggcgtgatcgggtgccacgcc 508
|||||||||||||||| |||||||| ||||||||||||||| ||||||||||| |||
Sbjct: 234 atcaccatctgccccatgggcttcagtagcgccagcagcggcacgatcgggtgccccgct 175
Query: 509 gacaccgtgtcgatgatgccgtccatggtccccgtcgccgccttcatctggtcctcgtcc 568
|||||||||||||||||||||||||| || || | ||||||||||||||| || |||
Sbjct: 174 gacaccgtgtcgatgatgccgtccatcgtgcctgccgccgccttcatctgctcggtgtcg 115
Query: 569 cggctgatgaggaactcgtccgcgccgaggttctcgatggcctcctggcgcttgctggcg 628
||||||| | ||||||||| ||||| ||| |||||||||||| |||||| | |
Sbjct: 114 cggctgaccaagaactcgtcggcgccaaggcgctcgatggcctctccacgcttggcaggg 55
Query: 629 gacgtgctgatgacggtgaccttcatcccgaaggccttgccgaacttgacggcg 682
|||| |||||| || |||||| ||||||||| |||||||||||||||||||||
Sbjct: 54 gacgagctgatcaccgtgaccgccatcccgaacgccttgccgaacttgacggcg 1
>gb|BG159605.1|BG159605 OV2_6_G01.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 273
Score = 270 bits (136), Expect = 2e-070
Identities = 214/240 (89%), Gaps = 4/240 (1%)
Strand = Plus / Minus
Query: 678 cggcgacgtggccgaggccgccgaggccgacgacgccgaggtgcttgccgggctcgttga 737
||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||
Sbjct: 273 cggcgacgtggccgaggccgccgagcccgacgacgcccagatgcttgccgggctcgttga 214
Query: 738 ggccgtggcgcatcatggggctgtacacggtgacgccggcgcagagcagcggcgcggtgc 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 ggccgtggcgcatcatggggctgtacacggtgacgccggcgcagagcagcggcgcggtgc 154
Query: 798 ggtccagcgccaagcccgtcggggacgcggaccacagtagtgntcgctcgcgaccaggac 857
||||||||||| || ||||| |||||||||||||| |||||| ||| || |||| | |||
Sbjct: 153 ggtccagcgcc-aggccgtccgggacgcggaccac-gtagtgctcgttcacgacgatgac 96
Query: 858 gtcgganaatnnnnnnntggtgggcgcgc--ncgtgcgcgtggtcgacgccgttngaggt 915
|||||| ||| |||||||| ||| ||||||||| |||||||||||| |||||
Sbjct: 95 gtcggagaatccccccttggtgggcacgccgccgtgcgcgtagtcgacgccgttggaggt 36
>gb|CF431001.1|CF431001 NIT1_4_D08.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_4_D08_A002 3', mRNA sequence
Length = 580
Score = 270 bits (136), Expect = 2e-070
Identities = 337/404 (83%)
Strand = Plus / Minus
Query: 209 ctgccggcgacgtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctccatg 268
||||| ||||| || | |||||| ||||| | |||||||||| |||| ||||||||||||
Sbjct: 406 ctgccagcgacatcaacgacgaaccggtacctgacgtcgttcctctccagccgctccatg 347
Query: 269 gccgtgttgacgtagtccatcttgatgacctcgacctcggccccgatgccgtgcttcccc 328
||||||||||||||||||||| | | || ||||| || || ||||||||||| ||||
Sbjct: 346 gccgtgttgacgtagtccatcctaacgagctcgatgtccgcggtgatgccgtgctgcccc 287
Query: 329 gcgaactcgagcatggcctggcagtccctgacgctgccgacattgttcccagccacgccc 388
||||| || ||||| ||||||||||| || || || || |||||| ||||| | |
Sbjct: 286 gcgaagtccagcatcgcctggcagtcggcgatactccccactccgttcccggccacccgc 227
Query: 389 ttcccgcccggcacgatggcgtaggccggcagctcgagcggcttgctcggcgcgcccacg 448
|||||||||| | ||||||||| ||||||||||| |||||| |||| |||||||| |||
Sbjct: 226 ttcccgcccgtgatgatggcgtacgccggcagctccagcggcgtgcttggcgcgccgacg 167
Query: 449 atcaccatctgccccagcggcttcagcagcgccagcagcggcgtgatcgggtgccacgcc 508
|||||||||||||||| |||||||| ||||||||||||||| ||||||||||| |||
Sbjct: 166 atcaccatctgccccatgggcttcagtagcgccagcagcggcacgatcgggtgccccgct 107
Query: 509 gacaccgtgtcgatgatgccgtccatggtccccgtcgccgccttcatctggtcctcgtcc 568
|||||||||||||||||||||||||| || || | ||||||||||||||| || |||
Sbjct: 106 gacaccgtgtcgatgatgccgtccatcgtgcctgccgccgccttcatctgctcggtgtcg 47
Query: 569 cggctgatgaggaactcgtccgcgccgaggttctcgatggcctc 612
||||||| | ||||||||| ||||| ||| ||||||||||||
Sbjct: 46 cggctgaccaagaactcgtcggcgccaaggcgctcgatggcctc 3
>gb|CX608350.1|CX608350 ANR1_38_C09.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_38_C09_A002 3', mRNA sequence
Length = 598
Score = 270 bits (136), Expect = 2e-070
Identities = 337/404 (83%)
Strand = Plus / Minus
Query: 209 ctgccggcgacgtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctccatg 268
||||| ||||| || | |||||| ||||| | |||||||||| |||| ||||||||||||
Sbjct: 448 ctgccagcgacatcaacgacgaaccggtacctgacgtcgttcctctccagccgctccatg 389
Query: 269 gccgtgttgacgtagtccatcttgatgacctcgacctcggccccgatgccgtgcttcccc 328
||||||||||||||||||||| | | || ||||| || || ||||||||||| ||||
Sbjct: 388 gccgtgttgacgtagtccatcctaacgagctcgatgtccgcggtgatgccgtgctgcccc 329
Query: 329 gcgaactcgagcatggcctggcagtccctgacgctgccgacattgttcccagccacgccc 388
||||| || ||||| ||||||||||| || || || || |||||| ||||| | |
Sbjct: 328 gcgaagtccagcatcgcctggcagtcggcgatactccccactccgttcccggccacccgc 269
Query: 389 ttcccgcccggcacgatggcgtaggccggcagctcgagcggcttgctcggcgcgcccacg 448
|||||||||| | ||||||||| ||||||||||| |||||| |||| |||||||| |||
Sbjct: 268 ttcccgcccgtgatgatggcgtacgccggcagctccagcggcgtgcttggcgcgccgacg 209
Query: 449 atcaccatctgccccagcggcttcagcagcgccagcagcggcgtgatcgggtgccacgcc 508
|||||||||||||||| |||||||| ||||||||||||||| ||||||||||| |||
Sbjct: 208 atcaccatctgccccatgggcttcagtagcgccagcagcggcacgatcgggtgccccgct 149
Query: 509 gacaccgtgtcgatgatgccgtccatggtccccgtcgccgccttcatctggtcctcgtcc 568
|||||||||||||||||||||||||| || || | ||||||||||||||| || |||
Sbjct: 148 gacaccgtgtcgatgatgccgtccatcgtgcctgccgccgccttcatctgctcggtgtcg 89
Query: 569 cggctgatgaggaactcgtccgcgccgaggttctcgatggcctc 612
||||||| | ||||||||| ||||| ||| ||||||||||||
Sbjct: 88 cggctgaccaagaactcgtcggcgccaaggcgctcgatggcctc 45
>gb|CF430956.1|CF430956 NIT1_4_F06.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_4_F06_A002 3', mRNA sequence
Length = 540
Score = 258 bits (130), Expect = 8e-067
Identities = 295/350 (84%)
Strand = Plus / Minus
Query: 209 ctgccggcgacgtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctccatg 268
||||| ||||| || | |||||| ||||| | |||||||||| |||| ||||||||||||
Sbjct: 368 ctgccagcgacatcaacgacgaaccggtacctgacgtcgttcctctccagccgctccatg 309
Query: 269 gccgtgttgacgtagtccatcttgatgacctcgacctcggccccgatgccgtgcttcccc 328
||||||||||||||||||||| | | || ||||| || || ||||||||||| ||||
Sbjct: 308 gccgtgttgacgtagtccatcctaacgagctcgatgtccgcggtgatgccgtgctgcccc 249
Query: 329 gcgaactcgagcatggcctggcagtccctgacgctgccgacattgttcccagccacgccc 388
||||| || ||||| ||||||||||| || || || || |||||| ||||| | |
Sbjct: 248 gcgaagtccagcatcgcctggcagtcggcgatactccccactccgttcccggccacccgc 189
Query: 389 ttcccgcccggcacgatggcgtaggccggcagctcgagcggcttgctcggcgcgcccacg 448
|||||||||| | ||||||||| ||||||||||| |||||| |||| |||||||| |||
Sbjct: 188 ttcccgcccgtgatgatggcgtacgccggcagctccagcggcgtgcttggcgcgccgacg 129
Query: 449 atcaccatctgccccagcggcttcagcagcgccagcagcggcgtgatcgggtgccacgcc 508
|||||||||||||||| |||||||| ||||||||||||||| ||||||||||| |||
Sbjct: 128 atcaccatctgccccatgggcttcagtagcgccagcagcggcacgatcgggtgccccgct 69
Query: 509 gacaccgtgtcgatgatgccgtccatggtccccgtcgccgccttcatctg 558
|||||||||||||||||||||||||| || || | |||||||||||||||
Sbjct: 68 gacaccgtgtcgatgatgccgtccatcgtgcctgccgccgccttcatctg 19
>gb|CF432804.1|CF432804 NIT1_19_E10.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_19_E10_A002 3', mRNA sequence
Length = 538
Score = 258 bits (130), Expect = 8e-067
Identities = 295/350 (84%)
Strand = Plus / Minus
Query: 209 ctgccggcgacgtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctccatg 268
||||| ||||| || | |||||| ||||| | |||||||||| |||| ||||||||||||
Sbjct: 370 ctgccagcgacatcaacgacgaaccggtacctgacgtcgttcctctccagccgctccatg 311
Query: 269 gccgtgttgacgtagtccatcttgatgacctcgacctcggccccgatgccgtgcttcccc 328
||||||||||||||||||||| | | || ||||| || || ||||||||||| ||||
Sbjct: 310 gccgtgttgacgtagtccatcctaacgagctcgatgtccgcggtgatgccgtgctgcccc 251
Query: 329 gcgaactcgagcatggcctggcagtccctgacgctgccgacattgttcccagccacgccc 388
||||| || ||||| ||||||||||| || || || || |||||| ||||| | |
Sbjct: 250 gcgaagtccagcatcgcctggcagtcggcgatactccccactccgttcccggccacccgc 191
Query: 389 ttcccgcccggcacgatggcgtaggccggcagctcgagcggcttgctcggcgcgcccacg 448
|||||||||| | ||||||||| ||||||||||| |||||| |||| |||||||| |||
Sbjct: 190 ttcccgcccgtgatgatggcgtacgccggcagctccagcggcgtgcttggcgcgccgacg 131
Query: 449 atcaccatctgccccagcggcttcagcagcgccagcagcggcgtgatcgggtgccacgcc 508
|||||||||||||||| |||||||| ||||||||||||||| ||||||||||| |||
Sbjct: 130 atcaccatctgccccatgggcttcagtagcgccagcagcggcacgatcgggtgccccgct 71
Query: 509 gacaccgtgtcgatgatgccgtccatggtccccgtcgccgccttcatctg 558
|||||||||||||||||||||||||| || || | |||||||||||||||
Sbjct: 70 gacaccgtgtcgatgatgccgtccatcgtgcctgccgccgccttcatctg 21
>gb|CN134387.1|CN134387 OX1_26_C04.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_26_C04_A002 3', mRNA sequence
Length = 745
Score = 252 bits (127), Expect = 5e-065
Identities = 289/343 (84%)
Strand = Plus / Minus
Query: 209 ctgccggcgacgtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctccatg 268
||||||||||| || | |||||| ||||| | |||||||||| |||| ||||||||||||
Sbjct: 582 ctgccggcgacatcaacgacgaaccggtacctgacgtcgttcctctccagccgctccatg 523
Query: 269 gccgtgttgacgtagtccatcttgatgacctcgacctcggccccgatgccgtgcttcccc 328
||||||||||||||||||||| | | || ||||| || || ||||||||||| ||||
Sbjct: 522 gccgtgttgacgtagtccatcctaacgagctcgatgtccgcggtgatgccgtgctgcccc 463
Query: 329 gcgaactcgagcatggcctggcagtccctgacgctgccgacattgttcccagccacgccc 388
||||| || ||||| ||||||||||| || || || || |||||| ||||| | |
Sbjct: 462 gcgaagtccagcatcgcctggcagtcggcgatactccccactccgttcccggccacccgc 403
Query: 389 ttcccgcccggcacgatggcgtaggccggcagctcgagcggcttgctcggcgcgcccacg 448
|||||||||| | ||||||||| ||||||||||| |||||| |||| |||||||| |||
Sbjct: 402 ttcccgcccgtgatgatggcgtacgccggcagctccagcggcgtgcttggcgcgccgacg 343
Query: 449 atcaccatctgccccagcggcttcagcagcgccagcagcggcgtgatcgggtgccacgcc 508
|||||||||||||||| |||||||| ||||||||||||||| ||||||||||| |||
Sbjct: 342 atcaccatctgccccatgggcttcagtagcgccagcagcggcacgatcgggtgccccgct 283
Query: 509 gacaccgtgtcgatgatgccgtccatggtccccgtcgccgcct 551
|||||||||||||||||||||||||| || || | ||||||||
Sbjct: 282 gacaccgtgtcgatgatgccgtccatcgtgcctgccgccgcct 240
Score = 58.0 bits (29), Expect = 2e-006
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 628 ggacgtgctgatgacggtgaccttcatcccgaaggccttgccgaacttgacgg 680
||||| |||||| || |||||| ||||||||| |||||||||||||||||||
Sbjct: 53 ggacgagctgatcaccgtgaccgccatcccgaacgccttgccgaacttgacgg 1
>gb|CW122627.1|CW122627 104_501_11110773_116_34677_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11110773, DNA
sequence
Length = 621
Score = 244 bits (123), Expect = 1e-062
Identities = 288/343 (83%)
Strand = Plus / Plus
Query: 209 ctgccggcgacgtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctccatg 268
||||| ||||| || | |||||| ||||| | |||||||||| |||| ||||||||||||
Sbjct: 105 ctgccagcgacatcaacgacgaaccggtacctgacgtcgttcctctccagccgctccatg 164
Query: 269 gccgtgttgacgtagtccatcttgatgacctcgacctcggccccgatgccgtgcttcccc 328
||||||||||||||||||||| | | || ||||| || || ||||||||||| ||||
Sbjct: 165 gccgtgttgacgtagtccatcctaacgagctcgatgtccgcggtgatgccgtgctgcccc 224
Query: 329 gcgaactcgagcatggcctggcagtccctgacgctgccgacattgttcccagccacgccc 388
||||| || ||||| ||||||||||| || || || || |||||| ||||| | |
Sbjct: 225 gcgaagtccagcatcgcctggcagtcggcgatactccccactccgttcccggccacccgc 284
Query: 389 ttcccgcccggcacgatggcgtaggccggcagctcgagcggcttgctcggcgcgcccacg 448
|||||||||| | ||||||||| ||||||||||| |||||| |||| |||||||| |||
Sbjct: 285 ttcccgcccgtgatgatggcgtacgccggcagctccagcggcgtgcttggcgcgccgacg 344
Query: 449 atcaccatctgccccagcggcttcagcagcgccagcagcggcgtgatcgggtgccacgcc 508
|||||||||||||||| |||||||| ||||||||||||||| ||||||||||| |||
Sbjct: 345 atcaccatctgccccatgggcttcagtagcgccagcagcggcacgatcgggtgccccgct 404
Query: 509 gacaccgtgtcgatgatgccgtccatggtccccgtcgccgcct 551
|||||||||||||||||||||||||| || || | ||||||||
Sbjct: 405 gacaccgtgtcgatgatgccgtccatcgtgcctgccgccgcct 447
>gb|CW465934.1|CW465934 fsbb001f216o21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f216o21, DNA
sequence
Length = 581
Score = 244 bits (123), Expect = 1e-062
Identities = 288/343 (83%)
Strand = Plus / Plus
Query: 209 ctgccggcgacgtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctccatg 268
||||| ||||| || | |||||| ||||| | |||||||||| |||| ||||||||||||
Sbjct: 84 ctgccagcgacatcaacgacgaaccggtacctgacgtcgttcctctccagccgctccatg 143
Query: 269 gccgtgttgacgtagtccatcttgatgacctcgacctcggccccgatgccgtgcttcccc 328
||||||||||||||||||||| | | || ||||| || || ||||||||||| ||||
Sbjct: 144 gccgtgttgacgtagtccatcctaacgagctcgatgtccgcggtgatgccgtgctgcccc 203
Query: 329 gcgaactcgagcatggcctggcagtccctgacgctgccgacattgttcccagccacgccc 388
||||| || ||||| ||||||||||| || || || || |||||| ||||| | |
Sbjct: 204 gcgaagtccagcatcgcctggcagtcggcgatactccccactccgttcccggccacccgc 263
Query: 389 ttcccgcccggcacgatggcgtaggccggcagctcgagcggcttgctcggcgcgcccacg 448
|||||||||| | ||||||||| ||||||||||| |||||| |||| |||||||| |||
Sbjct: 264 ttcccgcccgtgatgatggcgtacgccggcagctccagcggcgtgcttggcgcgccgacg 323
Query: 449 atcaccatctgccccagcggcttcagcagcgccagcagcggcgtgatcgggtgccacgcc 508
|||||||||||||||| |||||||| ||||||||||||||| ||||||||||| |||
Sbjct: 324 atcaccatctgccccatgggcttcagtagcgccagcagcggcacgatcgggtgccccgct 383
Query: 509 gacaccgtgtcgatgatgccgtccatggtccccgtcgccgcct 551
|||||||||||||||||||||||||| || || | ||||||||
Sbjct: 384 gacaccgtgtcgatgatgccgtccatcgtgcctgccgccgcct 426
>gb|CX614809.1|CX614809 GABR1_16_B02.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_16_B02_A002 5', mRNA sequence
Length = 710
Score = 242 bits (122), Expect = 5e-062
Identities = 200/226 (88%), Gaps = 4/226 (1%)
Strand = Plus / Minus
Query: 692 aggccgccgaggccgacgacgccgaggtgcttgccgggctcgttgaggccgtggcgcatc 751
||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 710 aggccgccgagcccgacgacgcccagatgcttgccgggctcgttgaggccgtggcgcatc 651
Query: 752 atggggctgtacacggtgacgccggcgcagagcagcggcgcggtgcggtccagcgccaag 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 650 atggggctgtacacggtgacgccggcgcagagcagcggcgcggtgcggtccagcgcc-ag 592
Query: 812 cccgtcggggacgcggaccacagtagtgntcgctcgcgaccaggacgtcgganaatnnnn 871
||||| |||||||||||||| |||||| ||| || |||| | ||||||||| |||
Sbjct: 591 gccgtccgggacgcggaccac-gtagtgctcgttcacgacgatgacgtcggagaatcccc 533
Query: 872 nnntggtgggcgcgc--ncgtgcgcgtggtcgacgccgttngaggt 915
|||||||| ||| ||||||||| |||||||||||| |||||
Sbjct: 532 ccttggtgggcacgccgccgtgcgcgtagtcgacgccgttggaggt 487
>gb|CN137545.1|CN137545 OX1_58_B04.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_58_B04_A002 3', mRNA sequence
Length = 436
Score = 240 bits (121), Expect = 2e-061
Identities = 185/205 (90%), Gaps = 1/205 (0%)
Strand = Plus / Minus
Query: 159 tgggctctgattgaaacctttgcagccatgcctaggcggcagagccgaggctgccggcga 218
||||||| |||| |||| ||| |||||||||||| || ||| ||||||||||||||||||
Sbjct: 204 tgggctccgattcaaactttt-cagccatgcctaagcagcaaagccgaggctgccggcga 146
Query: 219 cgtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctccatggccgtgttga 278
||||||||||||| |||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct: 145 cgtcgatgacgaaacggtagcgaacgtcgttcttctcgagccgctcgatcgccgtgttga 86
Query: 279 cgtagtccatcttgatgacctcgacctcggccccgatgccgtgcttccccgcgaactcga 338
||||||||||||||||||| || |||||||| || |||||| |||||||||| ||||| |
Sbjct: 85 cgtagtccatcttgatgacttccacctcggcgccaatgccgagcttccccgcaaactcaa 26
Query: 339 gcatggcctggcagtccctgacgct 363
||||||||||||| |||| ||||||
Sbjct: 25 gcatggcctggcaatccccgacgct 1
>gb|CF429876.1|CF429876 PH1_25_A07.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_25_A07_A002 3', mRNA sequence
Length = 542
Score = 236 bits (119), Expect = 3e-060
Identities = 294/351 (83%), Gaps = 1/351 (0%)
Strand = Plus / Minus
Query: 209 ctgccggcgacgtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctccatg 268
||||| ||||| || | |||||| ||||| | |||||||||| |||| ||||||||||||
Sbjct: 367 ctgccagcgacatcaacgacgaaccggtacctgacgtcgttcctctccagccgctccatg 308
Query: 269 gccgtgttgacgtagtccatcttgatgacctcgacctcggccccg-atgccgtgcttccc 327
||||||||||||||||||||| | | || ||||| || || | |||||||||| |||
Sbjct: 307 gccgtgttgacgtagtccatcctaacgagctcgatgtccgcggtggatgccgtgctgccc 248
Query: 328 cgcgaactcgagcatggcctggcagtccctgacgctgccgacattgttcccagccacgcc 387
|||||| || ||||| ||||||||||| || || || || |||||| ||||| |
Sbjct: 247 cgcgaagtccagcatcgcctggcagtcggcgatactccccactccgttcccggccacccg 188
Query: 388 cttcccgcccggcacgatggcgtaggccggcagctcgagcggcttgctcggcgcgcccac 447
||||||||||| | ||||||||| ||||||||||| |||||| |||| |||||||| ||
Sbjct: 187 cttcccgcccgtgatgatggcgtacgccggcagctccagcggcgtgcttggcgcgccgac 128
Query: 448 gatcaccatctgccccagcggcttcagcagcgccagcagcggcgtgatcgggtgccacgc 507
|||||||||||||||| |||||||| ||||||||||||||| ||||||||||| |||
Sbjct: 127 aatcaccatctgccccatgggcttcagtagcgccagcagcggcacgatcgggtgccccgc 68
Query: 508 cgacaccgtgtcgatgatgccgtccatggtccccgtcgccgccttcatctg 558
|||||||||||||||||||||||||| || || | |||||||||||||||
Sbjct: 67 tgacaccgtgtcgatgatgccgtccatcgtgcctgccgccgccttcatctg 17
>gb|BM324190.1|BM324190 PIC1_25_D10.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 512
Score = 226 bits (114), Expect = 3e-057
Identities = 189/214 (88%), Gaps = 4/214 (1%)
Strand = Plus / Minus
Query: 704 ccgacgacgccgaggtgcttgccgggctcgttgaggccgtggcgcatcatggggctgtac 763
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ccgacgacgcccagatgcttgccgggctcgttgaggccgtggcgcatcatggggctgtac 451
Query: 764 acggtgacgccggcgcagagcagcggcgcggtgcggtccagcgccaagcccgtcggggac 823
||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct: 450 acggtgacgccggcgcagagcagcggcgcggtgcggtccagcgcc-aggccgtccgggac 392
Query: 824 gcggaccacagtagtgntcgctcgcgaccaggacgtcgganaatnnnnnnntggtgggcg 883
||||||||| |||||| ||| || |||| | ||||||||| ||| ||||||||
Sbjct: 391 gcggaccac-gtagtgctcgttcacgacgatgacgtcggagaatccccccttggtgggca 333
Query: 884 cgc--ncgtgcgcgtggtcgacgccgttngaggt 915
||| ||||||||| |||||||||||| |||||
Sbjct: 332 cgccgccgtgcgcgtagtcgacgccgttggaggt 299
>gb|CX622516.1|CX622516 GABR1_64_A04.g2_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_64_A04_A002 5', mRNA sequence
Length = 754
Score = 226 bits (114), Expect = 3e-057
Identities = 189/214 (88%), Gaps = 4/214 (1%)
Strand = Plus / Minus
Query: 704 ccgacgacgccgaggtgcttgccgggctcgttgaggccgtggcgcatcatggggctgtac 763
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 ccgacgacgcccagatgcttgccgggctcgttgaggccgtggcgcatcatggggctgtac 691
Query: 764 acggtgacgccggcgcagagcagcggcgcggtgcggtccagcgccaagcccgtcggggac 823
||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct: 690 acggtgacgccggcgcagagcagcggcgcggtgcggtccagcgcc-aggccgtccgggac 632
Query: 824 gcggaccacagtagtgntcgctcgcgaccaggacgtcgganaatnnnnnnntggtgggcg 883
||||||||| |||||| ||| || |||| | ||||||||| ||| ||||||||
Sbjct: 631 gcggaccac-gtagtgctcgttcacgacgatgacgtcggagaatccccccttggtgggca 573
Query: 884 cgc--ncgtgcgcgtggtcgacgccgttngaggt 915
||| ||||||||| |||||||||||| |||||
Sbjct: 572 cgccgccgtgcgcgtagtcgacgccgttggaggt 539
>gb|CF431564.1|CF431564 NIT1_8_B02.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_8_B02_A002 3', mRNA sequence
Length = 485
Score = 214 bits (108), Expect = 1e-053
Identities = 261/312 (83%)
Strand = Plus / Minus
Query: 209 ctgccggcgacgtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctccatg 268
||||| ||||| || | |||||| ||||| | |||||||||| |||| ||||||||||||
Sbjct: 312 ctgccagcgacatcaacgacgaaccggtacctgacgtcgttcctctccagccgctccatg 253
Query: 269 gccgtgttgacgtagtccatcttgatgacctcgacctcggccccgatgccgtgcttcccc 328
||||||||||||||||||||| | | || ||||| || || ||||||||||| ||||
Sbjct: 252 gccgtgttgacgtagtccatcctaacgagctcgatgtccgcggtgatgccgtgctgcccc 193
Query: 329 gcgaactcgagcatggcctggcagtccctgacgctgccgacattgttcccagccacgccc 388
||||| || ||||| ||||||||||| || || || || |||||| ||||| | |
Sbjct: 192 gcgaagtccagcatcgcctggcagtcggcgatactccccactccgttcccggccacccgc 133
Query: 389 ttcccgcccggcacgatggcgtaggccggcagctcgagcggcttgctcggcgcgcccacg 448
|||||||||| | ||||||||| ||||||||||| |||||| |||| |||||||| |||
Sbjct: 132 ttcccgcccgtgatgatggcgtacgccggcagctccagcggcgtgcttggcgcgccgacg 73
Query: 449 atcaccatctgccccagcggcttcagcagcgccagcagcggcgtgatcgggtgccacgcc 508
|||||||||||||||| |||||||| ||||||||||||||| ||||||||||| |||
Sbjct: 72 atcaccatctgccccatgggcttcagtagcgccagcagcggcacgatcgggtgccccgct 13
Query: 509 gacaccgtgtcg 520
||||||||||||
Sbjct: 12 gacaccgtgtcg 1
>gb|CW409779.1|CW409779 fsbb001f104d18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f104d18, DNA
sequence
Length = 703
Score = 212 bits (107), Expect = 4e-053
Identities = 245/291 (84%)
Strand = Plus / Plus
Query: 261 gctccatggccgtgttgacgtagtccatcttgatgacctcgacctcggccccgatgccgt 320
||||||||||||||||||||||||||||| | | || ||||| || || ||||||||
Sbjct: 1 gctccatggccgtgttgacgtagtccatcctaacgagctcgatgtccgcggtgatgccgt 60
Query: 321 gcttccccgcgaactcgagcatggcctggcagtccctgacgctgccgacattgttcccag 380
||| ||||||||| || ||||| ||||||||||| || || || || |||||| |
Sbjct: 61 gctgccccgcgaagtccagcatcgcctggcagtcggcgatactccccactccgttcccgg 120
Query: 381 ccacgcccttcccgcccggcacgatggcgtaggccggcagctcgagcggcttgctcggcg 440
|||| | ||||||||||| | ||||||||| ||||||||||| |||||| |||| ||||
Sbjct: 121 ccacccgcttcccgcccgtgatgatggcgtacgccggcagctccagcggcgtgcttggcg 180
Query: 441 cgcccacgatcaccatctgccccagcggcttcagcagcgccagcagcggcgtgatcgggt 500
|||| ||||||||||||||||||| |||||||| ||||||||||||||| ||||||||
Sbjct: 181 cgccgacgatcaccatctgccccatgggcttcagtagcgccagcagcggcacgatcgggt 240
Query: 501 gccacgccgacaccgtgtcgatgatgccgtccatggtccccgtcgccgcct 551
||| ||| |||||||||||||||||||||||||| || || | ||||||||
Sbjct: 241 gccccgctgacaccgtgtcgatgatgccgtccatcgtgcctgccgccgcct 291
Score = 180 bits (91), Expect = 2e-043
Identities = 148/167 (88%)
Strand = Plus / Plus
Query: 628 ggacgtgctgatgacggtgaccttcatcccgaaggccttgccgaacttgacggcgacgtg 687
||||| |||||| || |||||| ||||||||| |||||||||||||||||||||| |||
Sbjct: 478 ggacgagctgatcaccgtgaccgccatcccgaacgccttgccgaacttgacggcgatgtg 537
Query: 688 gccgaggccgccgaggccgacgacgccgaggtgcttgccgggctcgttgaggccgtggcg 747
||||||||| ||||| || |||||||||||| |||| |||||| ||||||||||||
Sbjct: 538 gccgaggccaccgagtcccacgacgccgaggcgcttcccgggcacgttgaggccgtactc 597
Query: 748 catcatggggctgtacacggtgacgccggcgcagagcagcggcgcgg 794
|| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 598 caccatggggctgtacaccgtgacgccggcgcagagcagcggcgcgg 644
>gb|CN148779.1|CN148779 WOUND1_58_F02.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_58_F02_A002 5', mRNA sequence
Length = 797
Score = 190 bits (96), Expect = 2e-046
Identities = 165/188 (87%), Gaps = 4/188 (2%)
Strand = Plus / Minus
Query: 730 ctcgttgaggccgtggcgcatcatggggctgtacacggtgacgccggcgcagagcagcgg 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ctcgttgaggccgtggcgcatcatggggctgtacacggtgacgccggcgcagagcagcgg 614
Query: 790 cgcggtgcggtccagcgccaagcccgtcggggacgcggaccacagtagtgntcgctcgcg 849
||||||||||||||||||| || ||||| |||||||||||||| |||||| ||| || ||
Sbjct: 613 cgcggtgcggtccagcgcc-aggccgtccgggacgcggaccac-gtagtgctcgttcacg 556
Query: 850 accaggacgtcgganaatnnnnnnntggtgggcgcgc--ncgtgcgcgtggtcgacgccg 907
|| | ||||||||| ||| |||||||| ||| ||||||||| ||||||||||
Sbjct: 555 acgatgacgtcggagaatccccccttggtgggcacgccgccgtgcgcgtagtcgacgccg 496
Query: 908 ttngaggt 915
|| |||||
Sbjct: 495 ttggaggt 488
Score = 168 bits (85), Expect = 6e-040
Identities = 118/129 (91%)
Strand = Plus / Minus
Query: 459 gccccagcggcttcagcagcgccagcagcggcgtgatcgggtgccacgccgacaccgtgt 518
|||||| ||||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct: 797 gccccaacggcttcagcagcgcaagcagtggcgtgatcgggtgccacgccgataccgtgt 738
Query: 519 cgatgatgccgtccatggtccccgtcgccgccttcatctggtcctcgtcccggctgatga 578
||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||| |
Sbjct: 737 cgatgatgccgtccatggtgcccgtcgccgccttcatctcctccgggtcccggctgatca 678
Query: 579 ggaactcgt 587
||||||||
Sbjct: 677 agaactcgt 669
>gb|BZ422560.1|BZ422560 id55d04.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone id55d04 5', DNA sequence
Length = 439
Score = 188 bits (95), Expect = 6e-046
Identities = 158/179 (88%)
Strand = Plus / Plus
Query: 616 gcgcttgctggcggacgtgctgatgacggtgaccttcatcccgaaggccttgccgaactt 675
|||||||| || |||| |||||||||||||||| |||| ||||| |||||| |||||||
Sbjct: 169 gcgcttgccgggcgacgagctgatgacggtgaccgtcatgccgaacgccttggcgaactt 228
Query: 676 gacggcgacgtggccgaggccgccgaggccgacgacgccgaggtgcttgccgggctcgtt 735
|||||| | |||||| ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 229 gacggccatgtggcctaggccaccgagaccgacgacgccgaggtgcttgccgggctcgtt 288
Query: 736 gaggccgtggcgcatcatggggctgtacacggtgacgccggcgcagagcagcggcgcgg 794
||| ||| || ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 289 gagcgcgtactgcgccatggggctgtacacggtgaccccggcgcagagcagcggcgcgg 347
>gb|CL196288.1|CL196288 104_422_10942954_114_32317_041 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10942954, DNA
sequence
Length = 461
Score = 188 bits (95), Expect = 6e-046
Identities = 158/179 (88%)
Strand = Plus / Plus
Query: 616 gcgcttgctggcggacgtgctgatgacggtgaccttcatcccgaaggccttgccgaactt 675
|||||||| || |||| |||||||||||||||| |||| ||||| |||||| |||||||
Sbjct: 255 gcgcttgccgggcgacgagctgatgacggtgaccgtcatgccgaacgccttggcgaactt 314
Query: 676 gacggcgacgtggccgaggccgccgaggccgacgacgccgaggtgcttgccgggctcgtt 735
|||||| | |||||| ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 315 gacggccatgtggcctaggccaccgagaccgacgacgccgaggtgcttgccgggctcgtt 374
Query: 736 gaggccgtggcgcatcatggggctgtacacggtgacgccggcgcagagcagcggcgcgg 794
||| ||| || ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 375 gagcgcgtactgcgccatggggctgtacacggtgaccccggcgcagagcagcggcgcgg 433
>gb|CW027560.1|CW027560 104_254_10498588_114_30395 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10498588, DNA
sequence
Length = 827
Score = 188 bits (95), Expect = 6e-046
Identities = 158/179 (88%)
Strand = Plus / Minus
Query: 616 gcgcttgctggcggacgtgctgatgacggtgaccttcatcccgaaggccttgccgaactt 675
|||||||| || |||| |||||||||||||||| |||| ||||| |||||| |||||||
Sbjct: 477 gcgcttgccgggcgacgagctgatgacggtgaccgtcatgccgaacgccttggcgaactt 418
Query: 676 gacggcgacgtggccgaggccgccgaggccgacgacgccgaggtgcttgccgggctcgtt 735
|||||| | |||||| ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 417 gacggccatgtggcctaggccaccgagaccgacgacgccgaggtgcttgccgggctcgtt 358
Query: 736 gaggccgtggcgcatcatggggctgtacacggtgacgccggcgcagagcagcggcgcgg 794
||| ||| || ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 357 gagcgcgtactgcgccatggggctgtacacggtgaccccggcgcagagcagcggcgcgg 299
Score = 121 bits (61), Expect = 1e-025
Identities = 97/109 (88%)
Strand = Plus / Minus
Query: 425 agcggcttgctcggcgcgcccacgatcaccatctgccccagcggcttcagcagcgccagc 484
|||||| |||| |||||||| |||| |||||||||||||| |||||||| |||||||||
Sbjct: 827 agcggcgtgcttggcgcgccgacgaccaccatctgccccatgggcttcagtagcgccagc 768
Query: 485 agcggcgtgatcgggtgccacgccgacaccgtgtcgatgatgccgtcca 533
|||||| |||| |||||| ||| |||||||||||||||||||||||||
Sbjct: 767 agcggcacgatctggtgccccgctgacaccgtgtcgatgatgccgtcca 719
>gb|CW479571.1|CW479571 fsbb001f238c15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f238c15, DNA
sequence
Length = 482
Score = 188 bits (95), Expect = 6e-046
Identities = 158/179 (88%)
Strand = Plus / Plus
Query: 616 gcgcttgctggcggacgtgctgatgacggtgaccttcatcccgaaggccttgccgaactt 675
|||||||| || |||| |||||||||||||||| |||| ||||| |||||| |||||||
Sbjct: 253 gcgcttgccgggcgacgagctgatgacggtgaccgtcatgccgaacgccttggcgaactt 312
Query: 676 gacggcgacgtggccgaggccgccgaggccgacgacgccgaggtgcttgccgggctcgtt 735
|||||| | |||||| ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 313 gacggccatgtggcctaggccaccgagaccgacgacgccgaggtgcttgccgggctcgtt 372
Query: 736 gaggccgtggcgcatcatggggctgtacacggtgacgccggcgcagagcagcggcgcgg 794
||| ||| || ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 373 gagcgcgtactgcgccatggggctgtacacggtgaccccggcgcagagcagcggcgcgg 431
>gb|CN138126.1|CN138126 OX1_61_H04.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_61_H04_A002 5', mRNA sequence
Length = 777
Score = 188 bits (95), Expect = 6e-046
Identities = 158/179 (88%)
Strand = Plus / Minus
Query: 616 gcgcttgctggcggacgtgctgatgacggtgaccttcatcccgaaggccttgccgaactt 675
|||||||| || |||| |||||||||||||||| |||| ||||| |||||| |||||||
Sbjct: 728 gcgcttgccgggcgacgagctgatgacggtgaccgtcatgccgaacgccttggcgaactt 669
Query: 676 gacggcgacgtggccgaggccgccgaggccgacgacgccgaggtgcttgccgggctcgtt 735
|||||| | |||||| ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 668 gacggccatgtggcctaggccaccgagaccgacgacgccgaggtgcttgccgggctcgtt 609
Query: 736 gaggccgtggcgcatcatggggctgtacacggtgacgccggcgcagagcagcggcgcgg 794
||| ||| || ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 608 gagcgcgtactgcgccatggggctgtacacggtgaccccggcgcagagcagcggcgcgg 550
>gb|CX622583.1|CX622583 GABR1_64_G03.g2_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_64_G03_A002 5', mRNA sequence
Length = 770
Score = 186 bits (94), Expect = 2e-045
Identities = 163/186 (87%), Gaps = 4/186 (2%)
Strand = Plus / Minus
Query: 732 cgttgaggccgtggcgcatcatggggctgtacacggtgacgccggcgcagagcagcggcg 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 cgttgaggccgtggcgcatcatggggctgtacacggtgacgccggcgcagagcagcggcg 711
Query: 792 cggtgcggtccagcgccaagcccgtcggggacgcggaccacagtagtgntcgctcgcgac 851
||||||||||||||||| || ||||| |||||||||||||| |||||| ||| || ||||
Sbjct: 710 cggtgcggtccagcgcc-aggccgtccgggacgcggaccac-gtagtgctcgttcacgac 653
Query: 852 caggacgtcgganaatnnnnnnntggtgggcgcgc--ncgtgcgcgtggtcgacgccgtt 909
| ||||||||| ||| |||||||| ||| ||||||||| ||||||||||||
Sbjct: 652 gatgacgtcggagaatccccccttggtgggcacgccgccgtgcgcgtagtcgacgccgtt 593
Query: 910 ngaggt 915
|||||
Sbjct: 592 ggaggt 587
>gb|CW250954.1|CW250954 104_713_11223665_148_35058_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11223665, DNA
sequence
Length = 271
Score = 180 bits (91), Expect = 2e-043
Identities = 148/167 (88%)
Strand = Plus / Plus
Query: 628 ggacgtgctgatgacggtgaccttcatcccgaaggccttgccgaacttgacggcgacgtg 687
||||| |||||| || |||||| ||||||||| |||||||||||||||||||||| |||
Sbjct: 16 ggacgagctgatcaccgtgaccgccatcccgaacgccttgccgaacttgacggcgatgtg 75
Query: 688 gccgaggccgccgaggccgacgacgccgaggtgcttgccgggctcgttgaggccgtggcg 747
||||||||| ||||| || |||||||||||| |||| |||||| ||||||||||||
Sbjct: 76 gccgaggccaccgagtcccacgacgccgaggcgcttcccgggcacgttgaggccgtactc 135
Query: 748 catcatggggctgtacacggtgacgccggcgcagagcagcggcgcgg 794
|| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 136 caccatggggctgtacaccgtgacgccggcgcagagcagcggcgcgg 182
>gb|CW479152.1|CW479152 fsbb001f237h02f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f237h02, DNA
sequence
Length = 430
Score = 180 bits (91), Expect = 2e-043
Identities = 148/167 (88%)
Strand = Plus / Plus
Query: 628 ggacgtgctgatgacggtgaccttcatcccgaaggccttgccgaacttgacggcgacgtg 687
||||| |||||| || |||||| ||||||||| |||||||||||||||||||||| |||
Sbjct: 177 ggacgagctgatcaccgtgaccgccatcccgaacgccttgccgaacttgacggcgatgtg 236
Query: 688 gccgaggccgccgaggccgacgacgccgaggtgcttgccgggctcgttgaggccgtggcg 747
||||||||| ||||| || |||||||||||| |||| |||||| ||||||||||||
Sbjct: 237 gccgaggccaccgagtcccacgacgccgaggcgcttcccgggcacgttgaggccgtactc 296
Query: 748 catcatggggctgtacacggtgacgccggcgcagagcagcggcgcgg 794
|| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 297 caccatggggctgtacaccgtgacgccggcgcagagcagcggcgcgg 343
>gb|BG052001.1|BG052001 RHIZ2_7_F11.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 665
Score = 180 bits (91), Expect = 2e-043
Identities = 159/181 (87%), Gaps = 3/181 (1%)
Strand = Plus / Minus
Query: 629 gacgtgctgatgacggtgaccttcatcccgaaggcc---ttgccgaacttgacggcgacg 685
|||||||||||||||||||||||||||||||| ||| ||| ||| |||||||||||||
Sbjct: 184 gacgtgctgatgacggtgaccttcatcccgaacgccgccttggcgagcttgacggcgacg 125
Query: 686 tggccgaggccgccgaggccgacgacgccgaggtgcttgccgggctcgttgaggccgtgg 745
||||| |||||||| || || || ||||||| |||||| ||||||| ||| |||||||||
Sbjct: 124 tggcccaggccgcccagccccaccacgccgacgtgcttcccgggcttgttcaggccgtgg 65
Query: 746 cgcatcatggggctgtacacggtgacgccggcgcagagcagcggcgcggtgcggtccagc 805
| ||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||
Sbjct: 64 tacttcatggggctgtacacggtgatgccggcgcacagcagcggcgcgccgcggtccagc 5
Query: 806 g 806
|
Sbjct: 4 g 4
Score = 60.0 bits (30), Expect = 4e-007
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 220 gtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctccatggccgtgttgac 279
|||||||||||||||||| | |||||| ||| |||| ||||||||||||||||| ||
Sbjct: 593 gtcgatgacgaagcggtacctgacgtcagccttggcgaggcgctccatggccgtgttcac 534
Query: 280 gtagtc 285
||||||
Sbjct: 533 gtagtc 528
Score = 58.0 bits (29), Expect = 2e-006
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 509 gacaccgtgtcgatgatgccgtccatggtccccgtcgccgccttcatct 557
|||||||||| ||||||||| |||||||| | || ||||||||||||||
Sbjct: 304 gacaccgtgttgatgatgccatccatggtgctcgccgccgccttcatct 256
>gb|CW310289.1|CW310289 104_799_11469637_116_35745_057 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11469637, DNA
sequence
Length = 678
Score = 172 bits (87), Expect = 4e-041
Identities = 158/181 (87%), Gaps = 3/181 (1%)
Strand = Plus / Minus
Query: 629 gacgtgctgatgacggtgaccttcatcccgaaggcc---ttgccgaacttgacggcgacg 685
|||||||||||||||||||||||||||||||| ||| ||| ||| |||||||||||||
Sbjct: 616 gacgtgctgatgacggtgaccttcatcccgaacgccgccttggcgagcttgacggcgacg 557
Query: 686 tggccgaggccgccgaggccgacgacgccgaggtgcttgccgggctcgttgaggccgtgg 745
||||| |||||||| || || | ||||||| |||||| ||||||| ||| |||||||||
Sbjct: 556 tggccaaggccgcccagccccagcacgccgacgtgcttcccgggcttgttcaggccgtgg 497
Query: 746 cgcatcatggggctgtacacggtgacgccggcgcagagcagcggcgcggtgcggtccagc 805
| ||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||
Sbjct: 496 tacttcatggggctgtacacggtgatgccggcgcacagcagcggcgcgccgcggtccagc 437
Query: 806 g 806
|
Sbjct: 436 g 436
>gb|CW310290.1|CW310290 104_799_11469637_148_35749_057 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11469637, DNA
sequence
Length = 671
Score = 172 bits (87), Expect = 4e-041
Identities = 158/181 (87%), Gaps = 3/181 (1%)
Strand = Plus / Plus
Query: 629 gacgtgctgatgacggtgaccttcatcccgaaggcc---ttgccgaacttgacggcgacg 685
|||||||||||||||||||||||||||||||| ||| ||| ||| |||||||||||||
Sbjct: 175 gacgtgctgatgacggtgaccttcatcccgaacgccgccttggcgagcttgacggcgacg 234
Query: 686 tggccgaggccgccgaggccgacgacgccgaggtgcttgccgggctcgttgaggccgtgg 745
||||| |||||||| || || | ||||||| |||||| ||||||| ||| |||||||||
Sbjct: 235 tggccaaggccgcccagccccagcacgccgacgtgcttcccgggcttgttcaggccgtgg 294
Query: 746 cgcatcatggggctgtacacggtgacgccggcgcagagcagcggcgcggtgcggtccagc 805
| ||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||
Sbjct: 295 tacttcatggggctgtacacggtgatgccggcgcacagcagcggcgcgccgcggtccagc 354
Query: 806 g 806
|
Sbjct: 355 g 355
Score = 58.0 bits (29), Expect = 2e-006
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 509 gacaccgtgtcgatgatgccgtccatggtccccgtcgccgccttcatct 557
|||||||||| ||||||||| |||||||| | || ||||||||||||||
Sbjct: 55 gacaccgtgttgatgatgccatccatggtgctcgccgccgccttcatct 103
>gb|CN145887.1|CN145887 WOUND1_36_A11.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_36_A11_A002 3', mRNA sequence
Length = 819
Score = 172 bits (87), Expect = 4e-041
Identities = 158/181 (87%), Gaps = 3/181 (1%)
Strand = Plus / Minus
Query: 629 gacgtgctgatgacggtgaccttcatcccgaaggcc---ttgccgaacttgacggcgacg 685
|||||||||||||||||||||||||||||||| ||| ||| ||| |||||||||||||
Sbjct: 224 gacgtgctgatgacggtgaccttcatcccgaacgccgccttggcgagcttgacggcgacg 165
Query: 686 tggccgaggccgccgaggccgacgacgccgaggtgcttgccgggctcgttgaggccgtgg 745
||||| |||||||| || || | ||||||| |||||| ||||||| ||| |||||||||
Sbjct: 164 tggccaaggccgcccagccccagcacgccgacgtgcttcccgggcttgttcaggccgtgg 105
Query: 746 cgcatcatggggctgtacacggtgacgccggcgcagagcagcggcgcggtgcggtccagc 805
| ||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||
Sbjct: 104 tacttcatggggctgtacacggtgatgccggcgcacagcagcggcgcgccgcggtccagc 45
Query: 806 g 806
|
Sbjct: 44 g 44
Score = 58.0 bits (29), Expect = 2e-006
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 509 gacaccgtgtcgatgatgccgtccatggtccccgtcgccgccttcatct 557
|||||||||| ||||||||| |||||||| | || ||||||||||||||
Sbjct: 344 gacaccgtgttgatgatgccatccatggtgctcgccgccgccttcatct 296
Score = 52.0 bits (26), Expect = 9e-005
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 220 gtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctccatggccgtgttgac 279
||||||||||| |||||| | |||||| ||| |||| ||||||||||||||||| ||
Sbjct: 633 gtcgatgacgaggcggtacctgacgtcagccttggcgaggcgctccatggccgtgttcac 574
Query: 280 gtagtc 285
||||||
Sbjct: 573 gtagtc 568
>gb|CF430017.1|CF430017 PH1_25_A07.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_25_A07_A002 5', mRNA sequence
Length = 781
Score = 167 bits (84), Expect = 2e-039
Identities = 148/168 (88%), Gaps = 1/168 (0%)
Strand = Plus / Minus
Query: 628 ggacgtgctgatgacggtgaccttcatcccgaaggccttgccgaacttgacggcgacgtg 687
||||| |||||| || |||||| ||||||||| |||||||||||||||||||||| |||
Sbjct: 726 ggacgagctgatcaccgtgaccgccatcccgaacgccttgccgaacttgacggcgatgtg 667
Query: 688 gccgaggccgccgag-gccgacgacgccgaggtgcttgccgggctcgttgaggccgtggc 746
||||||||| ||||| || |||||||||||| |||| |||||| ||||||||||||
Sbjct: 666 gccgaggccaccgagtccccacgacgccgaggcgcttcccgggcacgttgaggccgtact 607
Query: 747 gcatcatggggctgtacacggtgacgccggcgcagagcagcggcgcgg 794
|| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 606 ccaccatggggctgtacaccgtgacgccggcgcagagcagcggcgcgg 559
>gb|CW027561.1|CW027561 104_254_10498588_116_30396 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10498588, DNA
sequence
Length = 820
Score = 153 bits (77), Expect = 3e-035
Identities = 140/161 (86%)
Strand = Plus / Plus
Query: 373 gttcccagccacgcccttcccgcccggcacgatggcgtaggccggcagctcgagcggctt 432
|||||| ||||| | ||||||||| | | ||||||||| ||||||||||| |||||| |
Sbjct: 378 gttcccggccacccgcttcccgccggtgatgatggcgtacgccggcagctccagcggcgt 437
Query: 433 gctcggcgcgcccacgatcaccatctgccccagcggcttcagcagcgccagcagcggcgt 492
||| |||||||| |||| |||||||||||||| |||||||| |||||||||||||||
Sbjct: 438 gcttggcgcgccgacgaccaccatctgccccatgggcttcagtagcgccagcagcggcac 497
Query: 493 gatcgggtgccacgccgacaccgtgtcgatgatgccgtcca 533
|||| |||||| ||| |||||||||||||||||||||||||
Sbjct: 498 gatctggtgccccgctgacaccgtgtcgatgatgccgtcca 538
Score = 85.7 bits (43), Expect = 7e-015
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 208 gctgccggcgacgtcgatgacgaagcggtagcggacgtcgttcttctcgagccgctccat 267
|||||| |||||||| ||||||||||| || | || |||||||||||||||||||| ||
Sbjct: 213 gctgcccgcgacgtcaatgacgaagcgatacctcacatcgttcttctcgagccgctcgat 272
Query: 268 ggccgtgttgacgtagtccatct 290
|| |||||||||||||||||||
Sbjct: 273 cgctgtgttgacgtagtccatct 295
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 280,231
Number of Sequences: 832831
Number of extensions: 280231
Number of successful extensions: 85906
Number of sequences better than 0.5: 143
Number of HSP's better than 0.5 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85538
Number of HSP's gapped (non-prelim): 324
length of query: 921
length of database: 491,359,669
effective HSP length: 20
effective length of query: 901
effective length of database: 474,703,049
effective search space: 427707447149
effective search space used: 427707447149
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)