BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3067375.2.1
(1829 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN130960.1|CN130960 RHOH1_45_B03.b1_A002 Acid- and alkal... 1384 0.0
gb|BE364125.1|BE364125 PI1_11_D07.g1_A002 Pathogen induced ... 1172 0.0
gb|BZ627054.1|BZ627054 ih50a05.b1 WGS-SbicolorF (DH5a methy... 882 0.0
gb|BG050643.1|BG050643 FM1_70_H01.g1_A003 Floral-Induced Me... 837 0.0
gb|CL704122.2|CL704122 SP__Bb0010P10.f SP__Bb Sorghum propi... 793 0.0
gb|CW276652.1|CW276652 104_750_11405606_116_35397_057 Sorgh... 743 0.0
gb|BG050804.1|BG050804 FM1_70_H01.b1_A003 Floral-Induced Me... 710 0.0
gb|BZ627055.1|BZ627055 ih50a05.g1 WGS-SbicolorF (DH5a methy... 563 e-158
gb|CF070574.1|CF070574 FE1_1_C02.b1_A002 Iron-deficient see... 377 e-102
gb|CW276653.1|CW276653 104_750_11405606_148_35401_057 Sorgh... 246 6e-063
gb|CL180611.1|CL180611 104_390_10896144_116_31930_288 Sorgh... 153 7e-035
gb|CW435810.1|CW435810 fsbb001f152c06k0 Sorghum methylation... 143 7e-032
gb|CX614951.1|CX614951 GABR1_17_F12.b1_A002 GA- or brassino... 125 2e-026
gb|CL184321.1|CL184321 104_397_10898775_114_32360_056 Sorgh... 113 6e-023
gb|CW078961.1|CW078961 104_397_10898775_114_32380_056 Sorgh... 113 6e-023
gb|CX615040.1|CX615040 GABR1_17_F12.g1_A002 GA- or brassino... 109 9e-022
gb|BG463033.1|BG463033 EM1_46_F12.g1_A002 Embryo 1 (EM1) So... 107 4e-021
gb|BI099230.1|BI099230 IP1_40_A12.g1_A002 Immature pannicle... 107 4e-021
gb|BG462976.1|BG462976 EM1_46_A04.g1_A002 Embryo 1 (EM1) So... 101 2e-019
gb|BI099139.1|BI099139 IP1_38_B12.g1_A002 Immature pannicle... 101 2e-019
gb|BI140866.1|BI140866 IP1_40_A12.b1_A002 Immature pannicle... 86 1e-014
gb|BI140744.1|BI140744 IP1_38_B12.b1_A002 Immature pannicle... 82 2e-013
gb|BM326900.1|BM326900 PIC1_4_E07.g1_A002 Pathogen-infected... 74 5e-011
gb|CW435809.1|CW435809 fsbb001f152c06f0 Sorghum methylation... 54 5e-005
gb|BE598152.1|BE598152 PI1_66_C12.b1_A002 Pathogen induced ... 54 5e-005
gb|BF422126.1|BF422126 FM1_12_B10.b1_A003 Floral-Induced Me... 54 5e-005
gb|BM326867.1|BM326867 PIC1_4_B01.g1_A002 Pathogen-infected... 54 5e-005
gb|CW204052.1|CW204052 104_631_11186335_148_36907_018 Sorgh... 52 2e-004
gb|BZ366417.1|BZ366417 ic96h04.g1 WGS-SbicolorF (JM107 adap... 50 7e-004
gb|BI351044.1|BI351044 IP1_69_B01.g1_A002 Immature pannicle... 50 7e-004
gb|CW055206.1|CW055206 104_296_10516955_115_30175 Sorghum m... 48 0.003
gb|CW160649.1|CW160649 104_567_11149998_116_36419_027 Sorgh... 48 0.003
gb|CW279682.1|CW279682 104_754_11407207_148_35437_022 Sorgh... 48 0.003
gb|CW214352.1|CW214352 104_646_11193969_116_37050_043 Sorgh... 46 0.011
gb|CW314593.1|CW314593 104_805_11471911_148_35819_026 Sorgh... 46 0.011
gb|CW453835.1|CW453835 fsbb001f198a04k0 Sorghum methylation... 46 0.011
gb|CL152855.1|CL152855 104_336_10780290_116_31366_306 Sorgh... 44 0.045
gb|CL180761.1|CL180761 104_391_10896247_148_31927_007 Sorgh... 44 0.045
gb|CW104478.1|CW104478 104_473_11012454_116_34443_021 Sorgh... 44 0.045
gb|CW154845.1|CW154845 104_557_11145819_116_36359_014 Sorgh... 44 0.045
gb|CW210549.1|CW210549 104_641_11189852_116_37009_080 Sorgh... 44 0.045
gb|CW219439.1|CW219439 104_653_11196765_116_37141_087 Sorgh... 44 0.045
gb|CW339748.1|CW339748 104_840_11485434_116_36145_071 Sorgh... 44 0.045
gb|BZ627589.1|BZ627589 ih53e12.b1 WGS-SbicolorF (DH5a methy... 42 0.18
gb|BZ627590.1|BZ627590 ih53e12.g1 WGS-SbicolorF (DH5a methy... 42 0.18
gb|CL151204.1|CL151204 104_333_10779076_116_31360_244 Sorgh... 42 0.18
gb|CL195187.1|CL195187 104_420_10942192_114_32301_058 Sorgh... 42 0.18
gb|CL195188.1|CL195188 104_420_10942192_116_32305_058 Sorgh... 42 0.18
gb|CW305045.1|CW305045 104_790_11466109_116_35700_059 Sorgh... 42 0.18
gb|CW305046.1|CW305046 104_790_11466109_148_36061_059 Sorgh... 42 0.18
gb|CW322880.1|CW322880 104_816_11476337_148_35949_065 Sorgh... 42 0.18
gb|CW375868.1|CW375868 fsbb001f053h01f0 Sorghum methylation... 42 0.18
gb|CW410072.1|CW410072 fsbb001f104k15f0 Sorghum methylation... 42 0.18
gb|CW488308.1|CW488308 fsbb001f254k06k0 Sorghum methylation... 42 0.18
gb|AF527809.1| Sorghum bicolor clone BAC SB_BBc0234M12 php2... 42 0.18
>gb|CN130960.1|CN130960 RHOH1_45_B03.b1_A002 Acid- and alkaline-treated roots Sorghum bicolor
cDNA clone RHOH1_45_B03_A002 3', mRNA sequence
Length = 836
Score = 1384 bits (698), Expect = 0.0
Identities = 804/837 (96%), Gaps = 8/837 (0%)
Strand = Plus / Minus
Query: 484 taaatgactggcaggcaaaatcggacatttccaatagaatggaaactaagtatttgtatc 543
|||||||||||||||||||||||||| ||||| ||||||||||||| |||| ||||||||
Sbjct: 833 taaatgactggcaggcaaaatcggacgtttcc-atagaatggaaacaaagtgtttgtatc 775
Query: 544 gtatatttctgttg----tctgtttctttctttctattaataacaaaatagattgcagtt 599
||||||| ||||| | ||||||||||||| |||||||||||||| |||||||| ||
Sbjct: 774 gtatattcgtgttgttcatttgtttctttctttatattaataacaaaacagattgcactt 715
Query: 600 ggtgtcattgtgtgggtataccaagctgttgttgcatagcagacctgatgtcaccagtgc 659
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 714 ggtgtcattgtgtgggtataccaagc---tgttgcatagcagacctgatgtcaccagtgc 658
Query: 660 tgaatccctcaattccaatgatatttgagctatcaagagcaacaacatcctgtaaagggt 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 tgaatccctcaattccaatgatatttgagctatcaagagcaacaacatcctgtaaagggt 598
Query: 720 accttctgaccgtatggatcctattcgcaggagtgttgaatccacccttaacgatgactg 779
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 597 accttctgactgtatggatcctattcgcaggagtgttgaatccacccttaaggatgactg 538
Query: 780 tcttgtggagacctccaaacagttcctcgtaatcagaatcaccagtttcaccaacaatga 839
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tcttgtgaagacctccaaacagttcctcgtaatcagaatcaccagtttcaccaacaatga 478
Query: 840 ccacagcatttggcaactctatgccccagcgaatagacaaataccttagagcctgagatc 899
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ccacagcatctggcaactctatgccccagcgaatagacaaataccttagagcctgagatc 418
Query: 900 gcgatgcatgcattggaattacagatagcctggtggcgccatggttatacagagcatgac 959
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 417 gcgatgcatgaattggaattacagatagcctggcggcgccatggttatacagagcatgac 358
Query: 960 aacgcagtgactggattctcatcaacttttgcagctccttcaaaggaggcaaatgatttg 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 aacgcagtgactggattctcatcaacttttgcagctccttcaaaggaggcaaatgatttg 298
Query: 1020 gattaaccactctaaatgcaagacaatatgttgaagagtgttccgaatcttcaaagatga 1079
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 297 gattaaccactctaaatgcaagacgatatgttgaagagtgttctgaatcttcaaagatga 238
Query: 1080 cttgcttttcagttctcccccttctttctactactgaagaagcccacttaactaagtact 1139
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 tttgcttttctgttctcccccttctttctactactgaagaagcccacttaactaagtact 178
Query: 1140 tccttaaaccttctcctccccaacgatactcaatatgtgatcggtagttatggtccaacg 1199
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 177 tccttaaaccttctcctccccaacgatactcgatatgtgatcggtagttatggtccaatg 118
Query: 1200 caaatgtaacacgggaattgcttggcacatcactagactgtaatggataatatatatcgc 1259
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
Sbjct: 117 caaatgtaacacgggaattgcttggcacatcactagattgtgatggataatatatatcac 58
Query: 1260 tcccactattgcatataaaggcatcaaagtcagtcgggagcatgcctgtgcgtacta 1316
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 57 tcccactattgcatataaaggcatcaaagtcagtagggagcatgcctgtgcgtacta 1
>gb|BE364125.1|BE364125 PI1_11_D07.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 653
Score = 1172 bits (591), Expect = 0.0
Identities = 640/656 (97%), Gaps = 3/656 (0%)
Strand = Plus / Minus
Query: 578 aataacaaaatagattgcagttggtgtcattgtgtgggtataccaagctgttgttgcata 637
|||||||||| | |||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 653 aataacaaaacanattgcacttggtgtcattgtgtgggtataccaagctgttg---cata 597
Query: 638 gcagacctgatgtcaccagtgctgaatccctcaattccaatgatatttgagctatcaaga 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 gcagacctgatgtcaccagtgctgaatccctcaattccaatgatatttgagctatcaaga 537
Query: 698 gcaacaacatcctgtaaagggtaccttctgaccgtatggatcctattcgcaggagtgttg 757
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 536 gcaacaacatcctgtaaagggtaccttctgactgtatggatcctattcgcaggagtgttg 477
Query: 758 aatccacccttaacgatgactgtcttgtggagacctccaaacagttcctcgtaatcagaa 817
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 476 aatccacccttaaggatgactgtcttgtgaagacctccaaacagttcctcgtaatcagaa 417
Query: 818 tcaccagtttcaccaacaatgaccacagcatttggcaactctatgccccagcgaatagac 877
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 416 tcaccagtttcaccaacaatgaccacagcatctggcaactctatgccccagcgaatagac 357
Query: 878 aaataccttagagcctgagatcgcgatgcatgcattggaattacagatagcctggtggcg 937
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 356 aaataccttagagcctgagatcgcgatgcatgaattggaattacagatagcctggtggcg 297
Query: 938 ccatggttatacagagcatgacaacgcagtgactggattctcatcaacttttgcagctcc 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ccatggttatacagagcatgacaacgcagtgactggattctcatcaacttttgcagctcc 237
Query: 998 ttcaaaggaggcaaatgatttggattaaccactctaaatgcaagacaatatgttgaagag 1057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 ttcaaaggaggcaaatgatttggattaaccactctaaatgcaagacaatatgttgaagag 177
Query: 1058 tgttccgaatcttcaaagatgacttgcttttcagttctcccccttctttctactactgaa 1117
||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 176 tgttctgaatcttcaaagatgatttgcttttctgttctcccccttctttctactactgaa 117
Query: 1118 gaagcccacttaactaagtacttccttaaaccttctcctccccaacgatactcaatatgt 1177
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 116 gaagcccacttaactaagtacttccttaaaccttctcctccccaacgatactcgatatgt 57
Query: 1178 gatcggtagttatggtccaacgcaaatgtaacacgggaattgcttggcacatcact 1233
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 56 gatcggtagttatggtccaatgcaaatgtaacacgggaattgcttggcacatcact 1
>gb|BZ627054.1|BZ627054 ih50a05.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih50a05 5', DNA sequence
Length = 663
Score = 882 bits (445), Expect = 0.0
Identities = 599/644 (93%), Gaps = 16/644 (2%)
Strand = Plus / Plus
Query: 249 ctgtaatcagatgctccacattgaagcgatggaaa--gtgtgaactttgtatattggaag 306
||||||||| | ||||||| |||||| |||||||| |||||| ||||||||||||||||
Sbjct: 28 ctgtaatcataagctccactttgaagtgatggaaaaagtgtgagctttgtatattggaag 87
Query: 307 cttgtttgctgaaaatacttccacaaaatgttttcactatcaacatttgaacaaatttgt 366
|||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 88 cttgtttgctgaaaatgcttccacaaaatgtttccactatcaacatttaaacaaatttgt 147
Query: 367 tccgtctgtacagttggatgtatccattaacaagctcttcaatccaaagaaatctccagt 426
| ||||||||||| |||||||||||||||||| ||||||| ||||| |||| ||||||
Sbjct: 148 ttcgtctgtacagctggatgtatccattaacatgctcttcgctccaa--aaatttccagt 205
Query: 427 gc-gggatccaagggaatgtcattcataacccgtgcagggaccaccacacacatacatta 485
|| ||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||
Sbjct: 206 gcggggatccaagggaatgtcattcataacccatgcaggg---accacacacatagatta 262
Query: 486 aatgactggcaggcaaaatcggacatttccaatagaatggaaactaagtatttgtatcgt 545
|||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||
Sbjct: 263 aatgactggcaggcaaaatcggacgtttccaatagaatggaaacaaagtgtttgtatcgt 322
Query: 546 atatttctgttg----tctgtttctttctttctattaataacaaaatagattgcagttgg 601
||||| ||||| | ||||||||||||| |||||||||||||| |||||||| ||||
Sbjct: 323 atattcgtgttgttcatttgtttctttctttatattaataacaaaacagattgcacttgg 382
Query: 602 tgtcattgtgtgggtataccaagctgttgttgcatagcagacctgatgtcaccagtgctg 661
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 383 tgtcattgtgtgggtataccaagc---tgttgcatagcagacctgatgtcaccagtgctg 439
Query: 662 aatccctcaattccaatgatatttgagctatcaagagcaacaacatcctgtaaagggtac 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aatccctcaattccaatgatatttgagctatcaagagcaacaacatcctgtaaagggtac 499
Query: 722 cttctgaccgtatggatcctattcgcaggagtgttgaatccacccttaacgatgactgtc 781
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 500 cttctgactgtatggatcctattcgcaggagtgttgaatccacccttaaggatgactgtc 559
Query: 782 ttgtggagacctccaaacagttcctcgtaatcagaatcaccagtttca-ccaacaatgac 840
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 560 ttgtgaagacctccaaacagttcctcgtaatcagaatcaccagtttcacccaacaatgac 619
Query: 841 cacagcatttggcaactctatgccccagcgaatagacaaatacc 884
|||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 620 cacagcatctggcaactctatgccccagcgaatagacaaatacc 663
>gb|BG050643.1|BG050643 FM1_70_H01.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 461
Score = 837 bits (422), Expect = 0.0
Identities = 454/464 (97%), Gaps = 3/464 (0%)
Strand = Plus / Minus
Query: 591 attgcagttggtgtcattgtgtgggtataccaagctgttgttgcatagcagacctgatgt 650
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 461 attgcacttggtgtcattgtgtgggtataccaagctgttg---catagcagacctgatgt 405
Query: 651 caccagtgctgaatccctcaattccaatgatatttgagctatcaagagcaacaacatcct 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 caccagtgctgaatccctcaattccaatgatatttgagctatcaagagcaacaacatcct 345
Query: 711 gtaaagggtaccttctgaccgtatggatcctattcgcaggagtgttgaatccacccttaa 770
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gtaaagggtaccttctgactgtatggatcctattcgcaggagtgttgaatccacccttaa 285
Query: 771 cgatgactgtcttgtggagacctccaaacagttcctcgtaatcagaatcaccagtttcac 830
||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 284 ggatgactgtcttgtgaagacctccaaacagttcctcgtaatcggaatcaccagtttcac 225
Query: 831 caacaatgaccacagcatttggcaactctatgccccagcgaatagacaaataccttagag 890
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 caacaatgaccacagcatctggcaactctatgccccagcgaatagacaaataccttagag 165
Query: 891 cctgagatcgcgatgcatgcattggaattacagatagcctggtggcgccatggttataca 950
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 cctgagatcgcgatgcatgaattggaattacagatagcctggtggcgccatggttataca 105
Query: 951 gagcatgacaacgcagtgactggattctcatcaacttttgcagctccttcaaaggaggca 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 gagcatgacaacgcagtgactggattctcatcaacttttgcagctccttcaaaggaggca 45
Query: 1011 aatgatttggattaaccactctaaatgcaagacaatatgttgaa 1054
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 aatgatttggattaaccactctaaatgcaagacaatatgttgaa 1
>gb|CL704122.2|CL704122 SP__Bb0010P10.f SP__Bb Sorghum propinquum genomic clone
SP__Bb0010P10 5', DNA sequence
Length = 747
Score = 793 bits (400), Expect = 0.0
Identities = 538/580 (92%), Gaps = 13/580 (2%)
Strand = Plus / Plus
Query: 311 tttgctgaaaatacttccacaaaatgttttcactatcaacatttgaacaaatttgttccg 370
|||||||||||| |||||||||||||||| |||||||||||||| |||||||||||| ||
Sbjct: 1 tttgctgaaaatgcttccacaaaatgtttccactatcaacatttaaacaaatttgtttcg 60
Query: 371 tctgtacagttggatgtatccattaacaagctcttcaatccaaagaaatctccagtgc-g 429
||||||||| |||||||||||||||||| ||||||| ||||| |||| |||||||| |
Sbjct: 61 tctgtacagctggatgtatccattaacatgctcttcgctccaa--aaatttccagtgcag 118
Query: 430 ggatccaagggaatgtcattcataacccgtgcagggaccaccacacacatacattaaatg 489
|||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||
Sbjct: 119 ggatccaagggaatgtcattcataacccatgcaggg---accacacacatagattaaatg 175
Query: 490 actggcaggcaaaatcggacatttccaatagaatggaaactaagtatttgtatcgtatat 549
|||||||||||||||||||| ||||||||| ||||||||| |||| ||||||||||||||
Sbjct: 176 actggcaggcaaaatcggacgtttccaataaaatggaaacgaagtgtttgtatcgtatat 235
Query: 550 ttctgttg----tctgtttctttctttctattaataacaaaatagattgcagttggtgtc 605
| ||||| | | ||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct: 236 tcgtgttgttcatttctttctttctttatattaataacaaaacagattgcacttggtgtc 295
Query: 606 attgtgtgggtataccaagctgttgttgcatagcagacctgatgtcaccagtgctgaatc 665
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 296 attgtgtgggtataccaagc---tgttgcatagcagacctgatgtcaccagtgctgaatc 352
Query: 666 cctcaattccaatgatatttgagctatcaagagcaacaacatcctgtaaagggtaccttc 725
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 353 cctcaattccaatgatatttgagctatcaagagcagcaacatcctgtagagggtaccttc 412
Query: 726 tgaccgtatggatcctattcgcaggagtgttgaatccacccttaacgatgactgtcttgt 785
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 413 tgactgtatggatcctattcgcaggagtgttgaatccacccttaaggatgactgtcttgt 472
Query: 786 ggagacctccaaacagttcctcgtaatcagaatcaccagtttcaccaacaatgaccacag 845
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 473 gaagacctccaaacagttcctcgtaatcggaatcaccagtttcaccaacaatgaccacag 532
Query: 846 catttggcaactctatgccccagcgaatagacaaatacct 885
||| ||||||||||||||||||||||||||||||||||||
Sbjct: 533 catctggcaactctatgccccagcgaatagacaaatacct 572
>gb|CW276652.1|CW276652 104_750_11405606_116_35397_057 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11405606, DNA
sequence
Length = 704
Score = 743 bits (375), Expect = 0.0
Identities = 486/519 (93%), Gaps = 13/519 (2%)
Strand = Plus / Minus
Query: 372 ctgtacagttggatgtatccattaacaagctcttcaatccaaagaaatctccagtgcggg 431
|||||||| |||||||||||||||||| ||||||| |||||| ||| |||||||||||
Sbjct: 704 ctgtacagctggatgtatccattaacatgctcttcgctccaaa--aatttccagtgcggg 647
Query: 432 -atccaagggaatgtcattcataacccgtgcagggaccaccacacacatacattaaatga 490
|||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||
Sbjct: 646 gatccaagggaatgtcattcataacccatgcagggaccac---acacatagattaaatga 590
Query: 491 ctggcaggcaaaatcggacatttccaatagaatggaaactaagtatttgtatcgtatatt 550
||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||
Sbjct: 589 ctggcaggcaaaatcggacgtttccaatagaatggaaacaaagtgtttgtatcgtatatt 530
Query: 551 tctgttg----tctgtttctttctttctattaataacaaaatagattgcagttggtgtca 606
||||| | ||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct: 529 cgtgttgttcatttgtttctttctttatattaataacaaaacagattgcacttggtgtca 470
Query: 607 ttgtgtgggtataccaagctgttgttgcatagcagacctgatgtcaccagtgctgaatcc 666
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ttgtgtgggtataccaagc---tgttgcatagcagacctgatgtcaccagtgctgaatcc 413
Query: 667 ctcaattccaatgatatttgagctatcaagagcaacaacatcctgtaaagggtaccttct 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ctcaattccaatgatatttgagctatcaagagcaacaacatcctgtaaagggtaccttct 353
Query: 727 gaccgtatggatcctattcgcaggagtgttgaatccacccttaacgatgactgtcttgtg 786
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 352 gactgtatggatcctattcgcaggagtgttgaatccacccttaaggatgactgtcttgtg 293
Query: 787 gagacctccaaacagttcctcgtaatcagaatcaccagtttcaccaacaatgaccacagc 846
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 aagacctccaaacagttcctcgtaatcagaatcaccagtttcaccaacaatgaccacagc 233
Query: 847 atttggcaactctatgccccagcgaatagacaaatacct 885
|| ||||||||||||||||||||||||||||||||||||
Sbjct: 232 atctggcaactctatgccccagcgaatagacaaatacct 194
>gb|BG050804.1|BG050804 FM1_70_H01.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 438
Score = 710 bits (358), Expect = 0.0
Identities = 412/430 (95%)
Strand = Plus / Minus
Query: 1164 gatactcaatatgtgatcggtagttatggtccaacgcaaatgtaacacgggaattgcttg 1223
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 438 gatactcgatatgtgatcggtagttatggtccaatgcaaatgtaacacgggaattgcttg 379
Query: 1224 gcacatcactagactgtaatggataatatatatcgctcccactattgcatataaaggcat 1283
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 378 gcacatcactagactgtgatggataatatatatcactcccactattgcatataaaggcat 319
Query: 1284 caaagtcagtcgggagcatgcctgtgcgtactattacagactgtagctctgctattgtca 1343
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 caaagtcagtagggagcatgcctgtgcgtactattacagactgtagctctgctattgtca 259
Query: 1344 gtgaagtagacagcacaaaacctgtagaacctgacatagttccagtgcgtgtagcctcaa 1403
||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 258 gtgaagtcgacaacacaaaacctgtagaacctgacatagttccagtgcgtgtggcctcaa 199
Query: 1404 cagagtttctgataatttgaattaaatcttcctttttaacagagtctacagcaatgatag 1463
|||| ||||||||||||||||||||||||||||| ||||| |||||||||||||| | |
Sbjct: 198 cagaatttctgataatttgaattaaatcttccttgttaacggagtctacagcaataacaa 139
Query: 1464 atatatgcttcctgcacttcacaggcaccttgtggtcttctttgcatgcgaaagcaggat 1523
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 138 atatatgcttcctgcacttcacaggcaccttctggtcttctttgcatgcgaaagcaggat 79
Query: 1524 gtcttggaccaagacttgatatccttgacaagtaattcttgcaatgttcaggccaagaaa 1583
|||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 gtcttggacccagagttaatatccttgacaagtaattcttgcaatgttcaggccaagaaa 19
Query: 1584 attggtgtat 1593
||||||||||
Sbjct: 18 attggtgtat 9
>gb|BZ627055.1|BZ627055 ih50a05.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih50a05 5', DNA sequence
Length = 384
Score = 563 bits (284), Expect = e-158
Identities = 316/326 (96%), Gaps = 3/326 (0%)
Strand = Plus / Minus
Query: 560 tgtttctttctttctattaataacaaaatagattgcagttggtgtcattgtgtgggtata 619
||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 365 tgtttctttctttatattaataacaaaacagattgcacttggtgtcattgtgtgggtata 306
Query: 620 ccaagctgttgttgcatagcagacctgatgtcaccagtgctgaatccctcaattccaatg 679
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccaagctgttg---catagcagacctgatgtcaccagtgctgaatccctcaattccaatg 249
Query: 680 atatttgagctatcaagagcaacaacatcctgtaaagggtaccttctgaccgtatggatc 739
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 248 atatttgagctatcaagagcaacaacatcctgtaaagggtaccttctgactgtatggatc 189
Query: 740 ctattcgcaggagtgttgaatccacccttaacgatgactgtcttgtggagacctccaaac 799
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 188 ctattcgcaggagtgttgaatccacccttaaggatgactgtcttgtgaagacctccaaac 129
Query: 800 agttcctcgtaatcagaatcaccagtttcaccaacaatgaccacagcatttggcaactct 859
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 128 agttcctcgtaatcagaatcaccagtttcaccaacaatgaccacagcatctggcaactct 69
Query: 860 atgccccagcgaatagacaaatacct 885
||||||||||||||||||||||||||
Sbjct: 68 atgccccagcgaatagacaaatacct 43
>gb|CF070574.1|CF070574 FE1_1_C02.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_1_C02_A002 3', mRNA sequence
Length = 458
Score = 377 bits (190), Expect = e-102
Identities = 317/355 (89%), Gaps = 12/355 (3%)
Strand = Plus / Minus
Query: 249 ctgtaatcagatgctccacattgaagcgatggaaa--gtgtgaactttgtatattggaag 306
||||||||| | ||||||| |||||| |||||||| |||||| ||||||||||||||||
Sbjct: 354 ctgtaatcataagctccactttgaagtgatggaaaaagtgtgagctttgtatattggaag 295
Query: 307 cttgtttgctgaaaatacttccacaaaatgttttcactatcaacatttgaacaaatttgt 366
|||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 294 cttgtttgctgaaaatgcttccacaaaatgtttccactatcaacatttaaacaaatttgt 235
Query: 367 tccgtctgtacagttggatgtatccattaacaagctcttcaatccaaagaaatctccagt 426
| ||||||||||| |||||||||||||||||| ||||||| ||||| |||| ||||||
Sbjct: 234 ttcgtctgtacagctggatgtatccattaacatgctcttcgctccaa--aaatttccagt 177
Query: 427 gc-gggatccaagggaatgtcattcataacccgtgcagggaccaccacacacatacatta 485
|| ||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||
Sbjct: 176 gcggggatccaagggaatgtcattcataacccatgcaggg---accacacacatagatta 120
Query: 486 aatgactggcaggcaaaatcggacatttccaatagaatggaaactaagtatttgtatcgt 545
|||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||
Sbjct: 119 aatgactggcaggcaaaatcggacgtttccaatagaatggaaacaaagtgtttgtatcga 60
Query: 546 atatttctgttg----tctgtttctttctttctattaataacaaaatagattgca 596
||||| |||| | ||||||||||||| |||||||||||||| ||||||||
Sbjct: 59 atattcgggttgttcatttgtttctttctttatattaataacaaaacagattgca 5
>gb|CW276653.1|CW276653 104_750_11405606_148_35401_057 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11405606, DNA
sequence
Length = 716
Score = 246 bits (124), Expect = 6e-063
Identities = 199/222 (89%), Gaps = 4/222 (1%)
Strand = Plus / Plus
Query: 249 ctgtaatcagatgctccacattgaagcgatggaaa--gtgtgaactttgtatattggaag 306
||||||||| | ||||||| |||||| |||||||| |||||| ||||||||||||||||
Sbjct: 476 ctgtaatcataagctccactttgaagtgatggaaaaagtgtgagctttgtatattggaag 535
Query: 307 cttgtttgctgaaaatacttccacaaaatgttttcactatcaacatttgaacaaatttgt 366
|||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 536 cttgtttgctgaaaatgcttccacaaaatgtttccactatcaacatttaaacaaatttgt 595
Query: 367 tccgtctgtacagttggatgtatccattaacaagctcttcaatccaaagaaatctccagt 426
| ||||||||||| |||||||||||||||||| ||||||| ||||| |||| ||||||
Sbjct: 596 ttcgtctgtacagctggatgtatccattaacatgctcttcgctccaa--aaatttccagt 653
Query: 427 gcgggatccaagggaatgtcattcataacccgtgcagggacc 468
||||| |||||| |||||||||||||||| ||||||||||
Sbjct: 654 gcggggatcaaggggatgtcattcataacccatgcagggacc 695
>gb|CL180611.1|CL180611 104_390_10896144_116_31930_288 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10896144, DNA
sequence
Length = 560
Score = 153 bits (77), Expect = 7e-035
Identities = 209/250 (83%), Gaps = 6/250 (2%)
Strand = Plus / Minus
Query: 281 aaagtgtgaactttgtatattggaagcttgtttgctgaaaatacttccacaaaatgtttt 340
||||||||| ||| |||||||||||||| |||| || ||| |||||||||||||||
Sbjct: 247 aaagtgtgagcttagtatattggaagctggtttcatgtcaatgtttccacaaaatgttta 188
Query: 341 cactatcaacatttgaacaaatttgttccgtctgtacagttggatgtatccattaacaag 400
| |||||||||||| | |||||||||| ||||||||||| | |||| ||||||| || |
Sbjct: 187 ccctatcaacatttaaccaaatttgtttcgtctgtacagaggtatgtctccattatcatg 128
Query: 401 ctcttcaatccaaagaaatctccagtgc-gggatccaagggaatgtcattcataacccgt 459
| ||| |||||| ||| | ||| || ||||| ||||||| |||||||||| | || |
Sbjct: 127 attttcgctccaaa--aattttcagagctgggatgcaagggattgtcattcatcagccat 70
Query: 460 gcagggaccaccacacacatacattaaatgactggcaggcaaaatcggacatttccaata 519
||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 69 gcagggaccac---acacattgattaaatgactggcaggcaaaatcggacgtttccaata 13
Query: 520 gaatggaaac 529
||||||||||
Sbjct: 12 gaatggaaac 3
>gb|CW435810.1|CW435810 fsbb001f152c06k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f152c06, DNA
sequence
Length = 735
Score = 143 bits (72), Expect = 7e-032
Identities = 144/168 (85%)
Strand = Plus / Plus
Query: 1012 atgatttggattaaccactctaaatgcaagacaatatgttgaagagtgttccgaatcttc 1071
|||||| ||||||||||||||||||||||||||||| | |||||||||||| | ||||||
Sbjct: 408 atgattgggattaaccactctaaatgcaagacaataggctgaagagtgttctggatcttc 467
Query: 1072 aaagatgacttgcttttcagttctcccccttctttctactactgaagaagcccacttaac 1131
||| || | |||| | || ||||| ||| |||||||||| ||||||| |||||||| ||
Sbjct: 468 aaaaataatttgcctctctgttcttccctttctttctaccactgaagtggcccacttcac 527
Query: 1132 taagtacttccttaaaccttctcctccccaacgatactcaatatgtga 1179
| || ||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 528 aagatatttccttagtccttctcctccccaacgatactcgatatgtga 575
Score = 60.0 bits (30), Expect = 8e-007
Identities = 87/106 (82%)
Strand = Plus / Plus
Query: 882 accttagagcctgagatcgcgatgcatgcattggaattacagatagcctggtggcgccat 941
|||||||||||||||||| ||||| || || || | |||||||| ||||| |||| |
Sbjct: 152 accttagagcctgagatcttgatgcgtggatagggactacagataatctggtagcgctgt 211
Query: 942 ggttatacagagcatgacaacgcagtgactggattctcatcaactt 987
||||||||| |||| ||||| || || |||||||||||||||||
Sbjct: 212 ggttatacaatgcattgcaacggagagattggattctcatcaactt 257
Score = 46.1 bits (23), Expect = 0.011
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 1259 ctcccactattgcatataaaggcatcaaagtcagtcgggagcatgcc 1305
|||||||||||||| || || |||||||| ||||| || ||||||||
Sbjct: 655 ctcccactattgcagatgaaagcatcaaaatcagtgggaagcatgcc 701
>gb|CX614951.1|CX614951 GABR1_17_F12.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_17_F12_A002 3', mRNA sequence
Length = 740
Score = 125 bits (63), Expect = 2e-026
Identities = 249/311 (80%)
Strand = Plus / Minus
Query: 677 atgatatttgagctatcaagagcaacaacatcctgtaaagggtaccttctgaccgtatgg 736
||||| |||||||| || || || ||||||||||| |||||||| || || ||||| |||
Sbjct: 408 atgatgtttgagctgtcgagggcgacaacatcctgcaaagggtatctcctcaccgtgtgg 349
Query: 737 atcctattcgcaggagtgttgaatccacccttaacgatgactgtcttgtggagacctcca 796
||||| || || || ||||||| | ||||| | ||| | ||| | |||||||| ||
Sbjct: 348 atcctgtttgcggggatgttgaactcgcccttcaggataatggtcctatggagacccccc 289
Query: 797 aacagttcctcgtaatcagaatcaccagtttcaccaacaatgaccacagcatttggcaac 856
| ||||||||||||||| ||||| || ||||||| |||| ||| || ||||||||| |
Sbjct: 288 agcagttcctcgtaatctgaatcgccgctttcacccacaaggactgcaacatttggcacc 229
Query: 857 tctatgccccagcgaatagacaaataccttagagcctgagatcgcgatgcatgcattgga 916
||||| ||||| || ||| |||| ||||||||||||||||||| ||||| || || ||
Sbjct: 228 tctatcccccaacgtatacacaagtaccttagagcctgagatcttgatgcgtggataggg 169
Query: 917 attacagatagcctggtggcgccatggttatacagagcatgacaacgcagtgactggatt 976
| |||||||| ||||| |||| |||||||||| |||| ||||| || || ||||||
Sbjct: 168 actacagataatctggtagcgctgtggttatacaatgcattgcaacggagagattggatt 109
Query: 977 ctcatcaactt 987
|||||||||||
Sbjct: 108 ctcatcaactt 98
Score = 83.8 bits (42), Expect = 5e-014
Identities = 57/62 (91%)
Strand = Plus / Minus
Query: 1012 atgatttggattaaccactctaaatgcaagacaatatgttgaagagtgttccgaatcttc 1071
|||||| ||||||||||||||||||||||||||||| | |||||||||||| | ||||||
Sbjct: 88 atgattgggattaaccactctaaatgcaagacaataggctgaagagtgttctggatcttc 29
Query: 1072 aa 1073
||
Sbjct: 28 aa 27
>gb|CL184321.1|CL184321 104_397_10898775_114_32360_056 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10898775, DNA
sequence
Length = 656
Score = 113 bits (57), Expect = 6e-023
Identities = 160/193 (82%), Gaps = 1/193 (0%)
Strand = Plus / Plus
Query: 1526 cttggaccaagacttgatatccttgacaagtaattcttgcaatgttcaggccaagaaaat 1585
||||| |||||| || |||||||||||| |||||||||||||||||||||||| || |||
Sbjct: 93 cttgggccaagagttaatatccttgacaggtaattcttgcaatgttcaggccacgagaat 152
Query: 1586 tggtgtatatttttcaatccattttctcgacatctagacacaaaactgcttttcagaaag 1645
|||| |||||| ||| |||||| |||| || || ||| |||| || || ||||||||
Sbjct: 153 cggtgaatatttgtcagtccattctctctgcaccttgac-caaagttgtttgtcagaaag 211
Query: 1646 catcttatagagggcatctgcaattgcatgctgatcatggggatcaacaaggagaccatt 1705
| ||||| || ||||| ||||| |||| |||||| || ||||||||||||||||||||
Sbjct: 212 aagtttatatagtgcatccgcaatggcattctgatcgtgcggatcaacaaggagaccatt 271
Query: 1706 ttccagaacctga 1718
| ||| ||||||
Sbjct: 272 attcaggacctga 284
Score = 61.9 bits (31), Expect = 2e-007
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 1713 acctgataaatttcaacaggagccccattttttgttgcaataacaggcaaaccgtgcatg 1772
||||||| |||||||||||| || ||||||||||| ||||| | ||||||||| | |||
Sbjct: 386 acctgattaatttcaacaggggctccattttttgtcgcaattataggcaaaccattcata 445
Query: 1773 gcagcct 1779
|||||||
Sbjct: 446 gcagcct 452
>gb|CW078961.1|CW078961 104_397_10898775_114_32380_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10898775, DNA
sequence
Length = 683
Score = 113 bits (57), Expect = 6e-023
Identities = 160/193 (82%), Gaps = 1/193 (0%)
Strand = Plus / Plus
Query: 1526 cttggaccaagacttgatatccttgacaagtaattcttgcaatgttcaggccaagaaaat 1585
||||| |||||| || |||||||||||| |||||||||||||||||||||||| || |||
Sbjct: 89 cttgggccaagagttaatatccttgacaggtaattcttgcaatgttcaggccacgagaat 148
Query: 1586 tggtgtatatttttcaatccattttctcgacatctagacacaaaactgcttttcagaaag 1645
|||| |||||| ||| |||||| |||| || || ||| |||| || || ||||||||
Sbjct: 149 cggtgaatatttgtcagtccattctctctgcaccttgac-caaagttgtttgtcagaaag 207
Query: 1646 catcttatagagggcatctgcaattgcatgctgatcatggggatcaacaaggagaccatt 1705
| ||||| || ||||| ||||| |||| |||||| || ||||||||||||||||||||
Sbjct: 208 aagtttatatagtgcatccgcaatggcattctgatcgtgcggatcaacaaggagaccatt 267
Query: 1706 ttccagaacctga 1718
| ||| ||||||
Sbjct: 268 attcaggacctga 280
Score = 61.9 bits (31), Expect = 2e-007
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 1713 acctgataaatttcaacaggagccccattttttgttgcaataacaggcaaaccgtgcatg 1772
||||||| |||||||||||| || ||||||||||| ||||| | ||||||||| | |||
Sbjct: 382 acctgattaatttcaacaggggctccattttttgtcgcaattataggcaaaccattcata 441
Query: 1773 gcagcct 1779
|||||||
Sbjct: 442 gcagcct 448
>gb|CX615040.1|CX615040 GABR1_17_F12.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_17_F12_A002 5', mRNA sequence
Length = 775
Score = 109 bits (55), Expect = 9e-022
Identities = 149/179 (83%), Gaps = 1/179 (0%)
Strand = Plus / Minus
Query: 1650 ttatagagggcatctgcaattgcatgctgatcatggggatcaacaaggagaccattttcc 1709
||||| || ||||| ||||| |||| |||||| || |||||||||||||||||||| | |
Sbjct: 760 ttatatagtgcatccgcaatggcattctgatcgtgcggatcaacaaggagaccattattc 701
Query: 1710 agaacctgataaatttcaacaggagccccattttttgttgcaataacaggcaaaccgtgc 1769
|| ||||||| |||||||||||| || ||||| ||||| ||||| | |||||||| | |
Sbjct: 700 aggacctgattaatttcaacaggggctccattctttgtcgcaattattggcaaaccattc 641
Query: 1770 atggcagcctctatcaaggtgacaccaaattgttcaaaataa-caacatttacaaaagc 1827
|| || |||||||||| || || ||||||||||| || ||| | ||||||||||||||
Sbjct: 640 atagcggcctctatcagagtaactccaaattgttcgaagtaagctacatttacaaaagc 582
>gb|BG463033.1|BG463033 EM1_46_F12.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 648
Score = 107 bits (54), Expect = 4e-021
Identities = 219/274 (79%)
Strand = Plus / Minus
Query: 677 atgatatttgagctatcaagagcaacaacatcctgtaaagggtaccttctgaccgtatgg 736
||||| |||||||| || || || ||||||||||| |||||||| || || ||||| |||
Sbjct: 289 atgatgtttgagctgtcgagggcgacaacatcctgcaaagggtatctcctcaccgtgtgg 230
Query: 737 atcctattcgcaggagtgttgaatccacccttaacgatgactgtcttgtggagacctcca 796
||||| || || || ||||||| | ||||| | ||| | ||| | |||||||| ||
Sbjct: 229 atcctgtttgcggggatgttgaactcgcccttcaggataatggtcctatggagacccccc 170
Query: 797 aacagttcctcgtaatcagaatcaccagtttcaccaacaatgaccacagcatttggcaac 856
| ||||||||||||||| ||||| || ||||||| |||| ||| || ||||||||| |
Sbjct: 169 agcagttcctcgtaatctgaatcgccgctttcacccacaaggactgcaacatttggcacc 110
Query: 857 tctatgccccagcgaatagacaaataccttagagcctgagatcgcgatgcatgcattgga 916
||||| ||||| || ||| |||| ||||||||||||||||||| ||||| || || ||
Sbjct: 109 tctatcccccaacgtatacacaagtaccttagagcctgagatcttgatgcgtggataggg 50
Query: 917 attacagatagcctggtggcgccatggttataca 950
| |||||||| ||||| |||| ||||||||||
Sbjct: 49 actacagataatctggtagcgctgtggttataca 16
>gb|BI099230.1|BI099230 IP1_40_A12.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 630
Score = 107 bits (54), Expect = 4e-021
Identities = 219/274 (79%)
Strand = Plus / Minus
Query: 677 atgatatttgagctatcaagagcaacaacatcctgtaaagggtaccttctgaccgtatgg 736
||||| |||||||| || || || ||||||||||| |||||||| || || ||||| |||
Sbjct: 282 atgatgtttgagctgtcgagggcgacaacatcctgcaaagggtatctcctcaccgtgtgg 223
Query: 737 atcctattcgcaggagtgttgaatccacccttaacgatgactgtcttgtggagacctcca 796
||||| || || || ||||||| | ||||| | ||| | ||| | |||||||| ||
Sbjct: 222 atcctgtttgcggggatgttgaactcgcccttcaggataatggtcctatggagacccccc 163
Query: 797 aacagttcctcgtaatcagaatcaccagtttcaccaacaatgaccacagcatttggcaac 856
| ||||||||||||||| ||||| || ||||||| |||| ||| || ||||||||| |
Sbjct: 162 agcagttcctcgtaatctgaatcgccgctttcacccacaaggactgcaacatttggcacc 103
Query: 857 tctatgccccagcgaatagacaaataccttagagcctgagatcgcgatgcatgcattgga 916
||||| ||||| || ||| |||| ||||||||||||||||||| ||||| || || ||
Sbjct: 102 tctatcccccaacgtatacacaagtaccttagagcctgagatcttgatgcgtggataggg 43
Query: 917 attacagatagcctggtggcgccatggttataca 950
| |||||||| ||||| |||| ||||||||||
Sbjct: 42 actacagataatctggtagcgctgtggttataca 9
>gb|BG462976.1|BG462976 EM1_46_A04.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 613
Score = 101 bits (51), Expect = 2e-019
Identities = 180/223 (80%)
Strand = Plus / Minus
Query: 677 atgatatttgagctatcaagagcaacaacatcctgtaaagggtaccttctgaccgtatgg 736
||||| |||||||| || || || ||||||||||| |||||||| || || ||||| |||
Sbjct: 256 atgatgtttgagctgtcgagggcgacaacatcctgcaaagggtatctcctcaccgtgtgg 197
Query: 737 atcctattcgcaggagtgttgaatccacccttaacgatgactgtcttgtggagacctcca 796
||||| || || || ||||||| | ||||| | ||| | ||| | |||||||| ||
Sbjct: 196 atcctgtttgcggggatgttgaactcgcccttcaggataatggtcctatggagacccccc 137
Query: 797 aacagttcctcgtaatcagaatcaccagtttcaccaacaatgaccacagcatttggcaac 856
| ||||||||||||||| ||||| || ||||||| |||| ||| || ||||||||| |
Sbjct: 136 agcagttcctcgtaatctgaatcgccgctttcacccacaaggactgcaacatttggcacc 77
Query: 857 tctatgccccagcgaatagacaaataccttagagcctgagatc 899
||||| ||||| || ||| |||| |||||||||||||||||||
Sbjct: 76 tctatcccccaacgtatacacaagtaccttagagcctgagatc 34
>gb|BI099139.1|BI099139 IP1_38_B12.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 583
Score = 101 bits (51), Expect = 2e-019
Identities = 180/223 (80%)
Strand = Plus / Minus
Query: 677 atgatatttgagctatcaagagcaacaacatcctgtaaagggtaccttctgaccgtatgg 736
||||| |||||||| || || || ||||||||||| |||||||| || || ||||| |||
Sbjct: 235 atgatgtttgagctgtcgagggcgacaacatcctgcaaagggtatctcctcaccgtgtgg 176
Query: 737 atcctattcgcaggagtgttgaatccacccttaacgatgactgtcttgtggagacctcca 796
||||| || || || ||||||| | ||||| | ||| | ||| | |||||||| ||
Sbjct: 175 atcctgtttgcggggatgttgaactcgcccttcaggataatggtcctatggagacccccc 116
Query: 797 aacagttcctcgtaatcagaatcaccagtttcaccaacaatgaccacagcatttggcaac 856
| ||||||||||||||| ||||| || ||||||| |||| ||| || ||||||||| |
Sbjct: 115 agcagttcctcgtaatctgaatcgccgctttcacccacaaggactgcaacatttggcacc 56
Query: 857 tctatgccccagcgaatagacaaataccttagagcctgagatc 899
||||| ||||| || ||| |||| |||||||||||||||||||
Sbjct: 55 tctatcccccaacgtatacacaagtaccttagagcctgagatc 13
>gb|BI140866.1|BI140866 IP1_40_A12.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 608
Score = 85.7 bits (43), Expect = 1e-014
Identities = 98/115 (85%), Gaps = 1/115 (0%)
Strand = Plus / Minus
Query: 1714 cctgataaatttcaacaggagccccattttttgttgcaataacaggcaaaccgtgcatgg 1773
|||||| |||||||||||| || ||||||||||| ||||| | ||||||||| | ||| |
Sbjct: 608 cctgattaatttcaacaggggctccattttttgtcgcaattataggcaaaccattcatag 549
Query: 1774 cagcctctatcaaggtgacaccaaattgttcaaaataa-caacatttacaaaagc 1827
|||||||||||| || || ||||||||||| || ||| | ||||||||||||||
Sbjct: 548 cagcctctatcagagtaactccaaattgttcgaagtaagctacatttacaaaagc 494
>gb|BI140744.1|BI140744 IP1_38_B12.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 606
Score = 81.8 bits (41), Expect = 2e-013
Identities = 96/113 (84%), Gaps = 1/113 (0%)
Strand = Plus / Minus
Query: 1716 tgataaatttcaacaggagccccattttttgttgcaataacaggcaaaccgtgcatggca 1775
|||| |||||||||||| || ||||||||||| ||||| | ||||||||| | ||| |||
Sbjct: 606 tgattaatttcaacaggggctccattttttgtcgcaattataggcaaaccattcatagca 547
Query: 1776 gcctctatcaaggtgacaccaaattgttcaaaataa-caacatttacaaaagc 1827
|||||||||| || || ||||||||||| || ||| | ||||||||||||||
Sbjct: 546 gcctctatcagagtaactccaaattgttcgaagtaagctacatttacaaaagc 494
>gb|BM326900.1|BM326900 PIC1_4_E07.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 565
Score = 73.8 bits (37), Expect = 5e-011
Identities = 166/209 (79%)
Strand = Plus / Minus
Query: 677 atgatatttgagctatcaagagcaacaacatcctgtaaagggtaccttctgaccgtatgg 736
||||| |||||||| || || || ||||||||||| |||||||| || || ||||| |||
Sbjct: 209 atgatgtttgagctgtcgagggcgacaacatcctgcaaagggtatctcctcaccgtgtgg 150
Query: 737 atcctattcgcaggagtgttgaatccacccttaacgatgactgtcttgtggagacctcca 796
||||| || || || ||||||| | ||||| | ||| | ||| | |||||||| ||
Sbjct: 149 atcctgtttgcggggatgttgaactcgcccttcaggataatggtcctatggagacccccc 90
Query: 797 aacagttcctcgtaatcagaatcaccagtttcaccaacaatgaccacagcatttggcaac 856
| ||||||||||||||| ||||| || ||||||| |||| ||| || ||||||||| |
Sbjct: 89 agcagttcctcgtaatctgaatcgccgctttcacccacaaggactgcaacatttggcacc 30
Query: 857 tctatgccccagcgaatagacaaatacct 885
||||| ||||| || ||| |||| |||||
Sbjct: 29 tctatcccccaacgtatacacaagtacct 1
>gb|CW435809.1|CW435809 fsbb001f152c06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f152c06, DNA
sequence
Length = 703
Score = 54.0 bits (27), Expect = 5e-005
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 1721 aatttcaacaggagccccattttttgttgcaataacaggcaaaccgtgcatggcagcct 1779
|||||||||||| || ||||||||||| ||||| | ||||||||| | ||| |||||||
Sbjct: 700 aatttcaacaggggctccattttttgtcgcaattataggcaaaccattcatagcagcct 642
>gb|BE598152.1|BE598152 PI1_66_C12.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 517
Score = 54.0 bits (27), Expect = 5e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 1559 ttcttgcaatgttcaggccaagaaaattggtgtatatttttca 1601
|||||||||||||||||||| |||||||| || || |||||||
Sbjct: 183 ttcttgcaatgttcaggccacgaaaattgatggatgtttttca 141
>gb|BF422126.1|BF422126 FM1_12_B10.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 492
Score = 54.0 bits (27), Expect = 5e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 1559 ttcttgcaatgttcaggccaagaaaattggtgtatatttttca 1601
|||||||||||||||||||| |||||||| || || |||||||
Sbjct: 158 ttcttgcaatgttcaggccacgaaaattgatggatgtttttca 116
>gb|BM326867.1|BM326867 PIC1_4_B01.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 453
Score = 54.0 bits (27), Expect = 5e-005
Identities = 114/143 (79%)
Strand = Plus / Minus
Query: 677 atgatatttgagctatcaagagcaacaacatcctgtaaagggtaccttctgaccgtatgg 736
||||| |||||||| || || || ||||||||||| |||||||| || || ||||| |||
Sbjct: 157 atgatgtttgagctgtcgagggcgacaacatcctgcaaagggtatctcctcaccgtgtgg 98
Query: 737 atcctattcgcaggagtgttgaatccacccttaacgatgactgtcttgtggagacctcca 796
||||| || || || ||||||| | ||||| | ||| | ||| | |||||||| ||
Sbjct: 97 atcctgtttgcggggatgttgaactcgcccttcaggataatggtcctatggagacccccc 38
Query: 797 aacagttcctcgtaatcagaatc 819
| ||||||||||||||| |||||
Sbjct: 37 agcagttcctcgtaatctgaatc 15
>gb|CW204052.1|CW204052 104_631_11186335_148_36907_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11186335, DNA
sequence
Length = 644
Score = 52.0 bits (26), Expect = 2e-004
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 159 attggtgtgtaaattagttttagttacatctcaatctatctcaacacatatggattga 216
||||| |||||| ||||||| | || || |||||||| |||||||||||||||||||
Sbjct: 86 attggggtgtaatttagtttaaattctatttcaatctaactcaacacatatggattga 29
>gb|BZ366417.1|BZ366417 ic96h04.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic96h04 5', DNA sequence
Length = 739
Score = 50.1 bits (25), Expect = 7e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 195 tatctcaacacatatggattgaggtaaat 223
||||||||||||||| |||||||||||||
Sbjct: 222 tatctcaacacatatagattgaggtaaat 250
>gb|BI351044.1|BI351044 IP1_69_B01.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 467
Score = 50.1 bits (25), Expect = 7e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 677 atgatatttgagctatcaagagcaacaacatcctgtaaagggtaccttctgaccgtatgg 736
||||| |||||||| || || || ||||||||||| |||||||| || || ||||| |||
Sbjct: 118 atgatgtttgagctgtcgagggcgacaacatcctgcaaagggtatctcctcaccgtgtgg 59
Query: 737 atcct 741
|||||
Sbjct: 58 atcct 54
>gb|CW055206.1|CW055206 104_296_10516955_115_30175 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10516955, DNA
sequence
Length = 489
Score = 48.1 bits (24), Expect = 0.003
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 125 tcgtattcaccttaatccacatgtattg 152
|||||||||||| |||||||||||||||
Sbjct: 63 tcgtattcacctcaatccacatgtattg 36
>gb|CW160649.1|CW160649 104_567_11149998_116_36419_027 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149998, DNA
sequence
Length = 721
Score = 48.1 bits (24), Expect = 0.003
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 199 tcaacacatatggattgaggtaaataca 226
||||||||| ||||||||||||||||||
Sbjct: 333 tcaacacatgtggattgaggtaaataca 306
>gb|CW279682.1|CW279682 104_754_11407207_148_35437_022 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11407207, DNA
sequence
Length = 652
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 143 acatgtattgggatgaattggtgt 166
||||||||||||||||||||||||
Sbjct: 608 acatgtattgggatgaattggtgt 631
>gb|CW214352.1|CW214352 104_646_11193969_116_37050_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11193969, DNA
sequence
Length = 661
Score = 46.1 bits (23), Expect = 0.011
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 190 caatctatctcaacacatatggattga 216
||||| |||||||||||||||||||||
Sbjct: 602 caatccatctcaacacatatggattga 628
>gb|CW314593.1|CW314593 104_805_11471911_148_35819_026 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11471911, DNA
sequence
Length = 653
Score = 46.1 bits (23), Expect = 0.011
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 129 attcaccttaatccacatgtattgggatgaattgg 163
|||||| | |||||||||||||||||||| |||||
Sbjct: 89 attcacatcaatccacatgtattgggatggattgg 55
>gb|CW453835.1|CW453835 fsbb001f198a04k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f198a04, DNA
sequence
Length = 312
Score = 46.1 bits (23), Expect = 0.011
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 129 attcaccttaatccacatgtattgggatgaattgg 163
|||||||| ||||||||||||||||| || |||||
Sbjct: 184 attcacctcaatccacatgtattggggtggattgg 150
>gb|CL152855.1|CL152855 104_336_10780290_116_31366_306 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10780290, DNA
sequence
Length = 738
Score = 44.1 bits (22), Expect = 0.045
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 190 caatctatctcaacacatatggattgaggt 219
|||||||| ||||||||||||||||||||
Sbjct: 279 caatctattccaacacatatggattgaggt 308
>gb|CL180761.1|CL180761 104_391_10896247_148_31927_007 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10896247, DNA
sequence
Length = 664
Score = 44.1 bits (22), Expect = 0.045
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 138 aatccacatgtattgggatgaattggtgtgtaaattagttttagtt 183
||||||| ||| ||| |||| ||||| |||||||||||||| ||||
Sbjct: 53 aatccacttgtgttgagatggattggggtgtaaattagtttaagtt 98
>gb|CW104478.1|CW104478 104_473_11012454_116_34443_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11012454, DNA
sequence
Length = 738
Score = 44.1 bits (22), Expect = 0.045
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 138 aatccacatgtattgggatgaattggtgtgtaaattagttttagtt 183
||||||| ||| ||| |||| ||||| |||||||||||||| ||||
Sbjct: 402 aatccacttgtgttgagatggattggggtgtaaattagtttaagtt 447
>gb|CW154845.1|CW154845 104_557_11145819_116_36359_014 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11145819, DNA
sequence
Length = 696
Score = 44.1 bits (22), Expect = 0.045
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 200 caacacatatggattgaggtaaatac 225
||||||||||||||||| ||||||||
Sbjct: 27 caacacatatggattgaagtaaatac 2
>gb|CW210549.1|CW210549 104_641_11189852_116_37009_080 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11189852, DNA
sequence
Length = 706
Score = 44.1 bits (22), Expect = 0.045
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 138 aatccacatgtattgggatgaattgg 163
||||||||||||||||| ||||||||
Sbjct: 304 aatccacatgtattggggtgaattgg 329
>gb|CW219439.1|CW219439 104_653_11196765_116_37141_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11196765, DNA
sequence
Length = 642
Score = 44.1 bits (22), Expect = 0.045
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 198 ctcaacacatatggattgaggt 219
||||||||||||||||||||||
Sbjct: 31 ctcaacacatatggattgaggt 10
>gb|CW339748.1|CW339748 104_840_11485434_116_36145_071 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485434, DNA
sequence
Length = 465
Score = 44.1 bits (22), Expect = 0.045
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 129 attcaccttaatccacatgtattggg 154
|||||||||||||||||||| |||||
Sbjct: 431 attcaccttaatccacatgtgttggg 456
>gb|BZ627589.1|BZ627589 ih53e12.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih53e12 5', DNA sequence
Length = 748
Score = 42.1 bits (21), Expect = 0.18
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 129 attcaccttaatccacatgtattgggatg 157
|||||| | ||||||||||||||||||||
Sbjct: 738 attcacatcaatccacatgtattgggatg 710
>gb|BZ627590.1|BZ627590 ih53e12.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih53e12 5', DNA sequence
Length = 553
Score = 42.1 bits (21), Expect = 0.18
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 129 attcaccttaatccacatgtattgggatg 157
|||||| | ||||||||||||||||||||
Sbjct: 396 attcacatcaatccacatgtattgggatg 424
>gb|CL151204.1|CL151204 104_333_10779076_116_31360_244 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10779076, DNA
sequence
Length = 710
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 182 ttacatctcaatctatctcaacaca 206
|||||||| ||||||||||||||||
Sbjct: 365 ttacatcttaatctatctcaacaca 389
>gb|CL195187.1|CL195187 104_420_10942192_114_32301_058 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10942192, DNA
sequence
Length = 772
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 182 ttacatctcaatctatctcaacaca 206
|||||||| ||||||||||||||||
Sbjct: 532 ttacatcttaatctatctcaacaca 508
>gb|CL195188.1|CL195188 104_420_10942192_116_32305_058 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10942192, DNA
sequence
Length = 600
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 182 ttacatctcaatctatctcaacaca 206
|||||||| ||||||||||||||||
Sbjct: 555 ttacatcttaatctatctcaacaca 579
>gb|CW305045.1|CW305045 104_790_11466109_116_35700_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11466109, DNA
sequence
Length = 677
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 182 ttacatctcaatctatctcaacaca 206
|||||||| ||||||||||||||||
Sbjct: 566 ttacatcttaatctatctcaacaca 590
>gb|CW305046.1|CW305046 104_790_11466109_148_36061_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11466109, DNA
sequence
Length = 666
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 182 ttacatctcaatctatctcaacaca 206
|||||||| ||||||||||||||||
Sbjct: 535 ttacatcttaatctatctcaacaca 511
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 486,933
Number of Sequences: 832831
Number of extensions: 486933
Number of successful extensions: 133556
Number of sequences better than 0.5: 55
Number of HSP's better than 0.5 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 133381
Number of HSP's gapped (non-prelim): 146
length of query: 1829
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1809
effective length of database: 474,703,049
effective search space: 858737815641
effective search space used: 858737815641
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)