BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3067267.2.1
(893 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD428774.1|CD428774 ETH1_36_F11.b1_A002 Ethylene-treated... 1108 0.0
gb|BF481293.1|BF481293 FM1_18_B07.g1_A003 Floral-Induced Me... 660 0.0
gb|CW127527.1|CW127527 104_508_11113488_116_34743_086 Sorgh... 289 2e-076
gb|CW127528.1|CW127528 104_508_11113488_148_34739_086 Sorgh... 281 5e-074
gb|CN146103.1|CN146103 WOUND1_37_D01.g1_A002 Wounded leaves... 135 8e-030
gb|BZ696221.1|BZ696221 SP__Ba0075N20.r SP__Ba Sorghum propi... 94 3e-017
gb|CW438479.1|CW438479 fsbb001f156c01f0 Sorghum methylation... 90 4e-016
gb|BE357360.1|BE357360 DG1_148_A09.g1_A002 Dark Grown 1 (DG... 90 4e-016
gb|CW791075.1|CW791075 SP__Ba0075N20.r SP__Ba Sorghum propi... 82 1e-013
gb|AW680176.1|AW680176 WS1_4_A08.g1_A002 Water-stressed 1 (... 66 6e-009
gb|BI211900.1|BI211900 IP1_62_G07.g1_A002 Immature pannicle... 66 6e-009
gb|CN146048.1|CN146048 WOUND1_37_D01.b1_A002 Wounded leaves... 66 6e-009
gb|CB926705.1|CB926705 ABA1_3_D08.g1_A012 Abscisic acid-tre... 64 2e-008
gb|BZ336405.1|BZ336405 hz34a11.b1 WGS-SbicolorF (JM107 adap... 60 4e-007
gb|CW175964.1|CW175964 104_588_11158234_148_36576_035 Sorgh... 60 4e-007
gb|BE357305.1|BE357305 DG1_148_A08.g1_A002 Dark Grown 1 (DG... 60 4e-007
gb|BE359571.1|BE359571 DG1_54_C03.g2_A002 Dark Grown 1 (DG1... 60 4e-007
gb|BG159377.1|BG159377 OV2_7_A10.g1_A002 Ovary 2 (OV2) Sorg... 60 4e-007
gb|BG356706.1|BG356706 OV2_26_H07.g1_A002 Ovary 2 (OV2) Sor... 60 4e-007
gb|BG933489.1|BG933489 WS1_4_A08.b1_A002 Water-stressed 1 (... 60 4e-007
gb|BG054290.1|BG054290 OV2_4_F12.g1_A002 Ovary 2 (OV2) Sorg... 54 2e-005
gb|CW338321.1|CW338321 104_838_11484683_116_36122_038 Sorgh... 52 9e-005
gb|BE600718.1|BE600718 PI1_91_G08.b1_A002 Pathogen induced ... 52 9e-005
gb|BZ337170.1|BZ337170 ia85g02.g1 WGS-SbicolorF (JM107 adap... 50 4e-004
gb|CD462668.1|CD462668 ETH1_39_E01.b1_A002 Ethylene-treated... 50 4e-004
gb|CF485475.1|CF485475 POL1_31_F05.g1_A002 Pollen Sorghum b... 48 0.001
gb|BM324659.1|BM324659 PIC1_33_H09.b1_A002 Pathogen-infecte... 46 0.006
gb|BM322502.1|BM322502 PIC1_5_F04.b1_A002 Pathogen-infected... 44 0.022
gb|CW109036.1|CW109036 104_481_11097853_116_34505_063 Sorgh... 42 0.087
gb|BF481081.1|BF481081 FM1_16_B09.b1_A003 Floral-Induced Me... 40 0.34
gb|CD462545.1|CD462545 ETH1_38_D03.b1_A002 Ethylene-treated... 40 0.34
>gb|CD428774.1|CD428774 ETH1_36_F11.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_36_F11_A002 3', mRNA sequence
Length = 704
Score = 1108 bits (559), Expect = 0.0
Identities = 643/670 (95%), Gaps = 2/670 (0%)
Strand = Plus / Plus
Query: 226 atgagattgatgctatcattagtcaacgtggtgaagctcgtagtgaacatgaagctagcc 285
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 atgagattgatgctatcattagtcaacgtggtgaagctcgtagcgaacatgaagctagcc 60
Query: 286 ggcgattgaaaactgagctattaatacagatggatgggttgactaagacagatgagcttg 345
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggcgattgaaaacggagctattaatacagatggatgggttgactaagacagatgagcttg 120
Query: 346 tttttgttctagcagcaacaaatttaccatgggagttggatgcagcaatgctgcgtcggc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttttgttctagcagcaacaaatttaccatgggagttggatgcagcaatgctgcgtcggc 180
Query: 406 tggagaagcgtattcttgttccattgccagagccggatgctagacatgctatgtttgaag 465
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 181 tggagaagcgtattcttgttccattgccagagccagatgctagacaagctatgtttgaag 240
Query: 466 agctcctgccatatacacctggcacaatggagattccctatgatgttcttgtggagaaaa 525
|||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 241 agctcctgccatctacacctggcaaaatggagattccctataatgttcttgtggagaaaa 300
Query: 526 ctgaaggatattctggctctgatattcgcctggtatgcaaggaagcagcaatgcagcccc 585
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 301 ctgaaggatattctggctctgatattcgccttgtatgcaaggaagcagcaatgcagcccc 360
Query: 586 taagacgggtaatggcagttcttgaaggcaggaaagaagaggtccctgagggtgagttgc 645
|||||||| ||||| |||||||||| ||||| |||||||||||||||||| ||||||||
Sbjct: 361 taagacggttaatgacagttcttgagcgcaggcaagaagaggtccctgaggatgagttgc 420
Query: 646 ctgaagttggcccagtaactacagaagatattgaacttgctttgaggaatacaagaccgt 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ctgaagttggcccagtaactacagaagatattgaacttgctttgaggaatacaagaccgt 480
Query: 706 ctgctcatcttcatgcacatagatacgaaaagttcaaccaagattatggcagtcatgtcc 765
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 481 ctgctcatcttcatgcacatagatacgaaaagtttaaccaagattatggcagtcatgtcc 540
Query: 766 atggctaaaggggagaagcttgttgt--agggtttaatttgtatgctcatgcgtgggcca 823
|||||||||||| ||||||||| ||| | |||||||||||||||||||||| |||||||
Sbjct: 541 atggctaaagggtagaagcttgctgtaaaaggtttaatttgtatgctcatgcttgggcca 600
Query: 824 ataggtgactactgaattcatcgacatgctgaggtatccttgtaaacactatgcttatcc 883
|||| | | ||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 601 atagatcaatactgaattcatcaacgtgctgaggtatccttgtaaacactatgcttatcc 660
Query: 884 ttgtatgctg 893
||| ||||||
Sbjct: 661 ttggatgctg 670
>gb|BF481293.1|BF481293 FM1_18_B07.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 436
Score = 660 bits (333), Expect = 0.0
Identities = 411/436 (94%), Gaps = 2/436 (0%)
Strand = Plus / Plus
Query: 449 acatgctatgtttgaagagctcctgccatatacacctggcacaatggagattccctatga 508
||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||
Sbjct: 1 acatgctatgtttgaagagctcctgccatctacacctggcaaaatgtagattccctatga 60
Query: 509 tgttcttgtggagaaaactgaaggatattctggctctgatattcgcctggtatgcaagga 568
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 61 tgttcttgtggagaaaactgaaggatattctggctctgatattcgccctgtatgcaagga 120
Query: 569 agcagcaatgcagcccctaagacgggtaatggcagttcttgaaggcaggaaagaagaggt 628
||||||||||||||||||||||||| ||||| |||||||||| ||||| ||||||||||
Sbjct: 121 agcagcaatgcagcccctaagacggttaatgacagttcttgagcgcaggcaagaagaggt 180
Query: 629 ccctgagggtgagttgcctgaagttggcccagtaactacagaagatattgaacttgcttt 688
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 181 ccctgaggatgagttgcctgaagttggcccagtaactacagaagatattgtacttgcttt 240
Query: 689 gaggaatacaagaccgtctgctcatcttcatgcacatagatacgaaaagttcaaccaaga 748
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 241 gaggaatacaagaccgtgtgctcatcttcatgcacatagatacgaaaagtttaaccaaga 300
Query: 749 ttatggcagtcatgtccatggctaaaggggagaagcttgttgt--agggtttaatttgta 806
||||||||||||||||||||||||||||| ||||||||| ||| | |||||||||||||
Sbjct: 301 ttatggcagtcatgtccatggctaaagggtagaagcttgctgtaaaaggtttaatttgta 360
Query: 807 tgctcatgcgtgggccaataggtgactactgaattcatcgacatgctgaggtatccttgt 866
||||||||| ||||||||||| | | ||||||||||||| || |||||||||||||||||
Sbjct: 361 tgctcatgcttgggccaatagatcaatactgaattcatcaacgtgctgaggtatccttgt 420
Query: 867 aaacactatgcttatc 882
||||||||||||||||
Sbjct: 421 aaacactatgcttatc 436
>gb|CW127527.1|CW127527 104_508_11113488_116_34743_086 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11113488, DNA
sequence
Length = 519
Score = 289 bits (146), Expect = 2e-076
Identities = 158/162 (97%)
Strand = Plus / Minus
Query: 153 ggtgactcggagaaactagtgaaagtgttattcgaacttgcaaggcatcatgcaccatct 212
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 438 ggtgactcggagaaactagtgaaagtattattcgagcttgcaaggcatcatgcaccatct 379
Query: 213 actattttccttgatgagattgatgctatcattagtcaacgtggtgaagctcgtagtgaa 272
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 accattttccttgatgagattgatgctatcattagtcaacgtggtgaagctcgtagtgaa 319
Query: 273 catgaagctagccggcgattgaaaactgagctattaatacag 314
|||||||||||||||||||||||||| |||||||||||||||
Sbjct: 318 catgaagctagccggcgattgaaaacggagctattaatacag 277
>gb|CW127528.1|CW127528 104_508_11113488_148_34739_086 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11113488, DNA
sequence
Length = 657
Score = 281 bits (142), Expect = 5e-074
Identities = 157/162 (96%)
Strand = Plus / Plus
Query: 153 ggtgactcggagaaactagtgaaagtgttattcgaacttgcaaggcatcatgcaccatct 212
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 321 ggtgactcggagaaactagtgaaagtattattcgagcttgcaaggcatcatgcaccatct 380
Query: 213 actattttccttgatgagattgatgctatcattagtcaacgtggtgaagctcgtagtgaa 272
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 accattttccttgatgagattgatgctatcattagtcaacgtggtgaagctcgtagcgaa 440
Query: 273 catgaagctagccggcgattgaaaactgagctattaatacag 314
|||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 catgaagctagccggcgattgaaaacggagctattaatacag 482
>gb|CN146103.1|CN146103 WOUND1_37_D01.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_37_D01_A002 5', mRNA sequence
Length = 742
Score = 135 bits (68), Expect = 8e-030
Identities = 194/236 (82%)
Strand = Plus / Plus
Query: 189 cttgcaaggcatcatgcaccatctactattttccttgatgagattgatgctatcattagt 248
||||| ||||||||||||||||| || || | |||||||| || ||||| || || ||
Sbjct: 430 cttgctaggcatcatgcaccatccacaatatgtcttgatgaaatagatgccattatcagc 489
Query: 249 caacgtggtgaagctcgtagtgaacatgaagctagccggcgattgaaaactgagctatta 308
|| |||||||||||||||||||| ||||||||||| || || ||||| ||||| ||| |
Sbjct: 490 caccgtggtgaagctcgtagtgagcatgaagctagtcgtcgcttgaagactgaactactt 549
Query: 309 atacagatggatgggttgactaagacagatgagcttgtttttgttctagcagcaacaaat 368
|| ||||||||||| ||||| |||||| | || | || ||||| || ||||| ||||||
Sbjct: 550 attcagatggatggtttgacaaagacaaacgacttggtatttgtacttgcagctacaaat 609
Query: 369 ttaccatgggagttggatgcagcaatgctgcgtcggctggagaagcgtattcttgt 424
| |||||||| ||||||||||| ||||| || |||| |||||||| ||||||||
Sbjct: 610 cttccatgggaattggatgcagctatgctccgcaggcttgagaagcgaattcttgt 665
>gb|BZ696221.1|BZ696221 SP__Ba0075N20.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0075N20 3', DNA sequence
Length = 1002
Score = 93.7 bits (47), Expect = 3e-017
Identities = 71/79 (89%)
Strand = Plus / Minus
Query: 558 gtatgcaaggaagcagcaatgcagcccctaagacgggtaatggcagttcttgaaggcagg 617
|||| ||||||| ||||||||||||||||||||||| ||||| |||||||||| |||||
Sbjct: 744 gtatacaaggaatcagcaatgcagcccctaagacggttaatgacagttcttgagagcagg 685
Query: 618 aaagaagaggtccctgagg 636
|||||||||||| |||||
Sbjct: 684 caagaagaggtccatgagg 666
>gb|CW438479.1|CW438479 fsbb001f156c01f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f156c01, DNA
sequence
Length = 788
Score = 89.7 bits (45), Expect = 4e-016
Identities = 96/113 (84%)
Strand = Plus / Minus
Query: 189 cttgcaaggcatcatgcaccatctactattttccttgatgagattgatgctatcattagt 248
||||| ||||||||||||||||| || || || |||||||| || ||||| || || ||
Sbjct: 731 cttgctaggcatcatgcaccatccacaatatttcttgatgaaatagatgccattatcagc 672
Query: 249 caacgtggtgaagctcgtagtgaacatgaagctagccggcgattgaaaactga 301
|| |||||||||||||||||||| ||||||||||| || || ||||| |||||
Sbjct: 671 cagcgtggtgaagctcgtagtgagcatgaagctagtcgtcgcttgaagactga 619
Score = 56.0 bits (28), Expect = 6e-006
Identities = 85/104 (81%)
Strand = Plus / Minus
Query: 312 cagatggatgggttgactaagacagatgagcttgtttttgttctagcagcaacaaattta 371
||||||||||| ||||| |||||| | || | || ||||| || ||||| |||||| |
Sbjct: 450 cagatggatggtttgacaaagacaaacgacttggtatttgtacttgcagctacaaatctt 391
Query: 372 ccatgggagttggatgcagcaatgctgcgtcggctggagaagcg 415
|||||||| ||||||||||| ||||| || |||| ||||||||
Sbjct: 390 ccatgggaattggatgcagctatgctccgcaggcttgagaagcg 347
>gb|BE357360.1|BE357360 DG1_148_A09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 703
Score = 89.7 bits (45), Expect = 4e-016
Identities = 132/161 (81%)
Strand = Plus / Plus
Query: 264 cgtagtgaacatgaagctagccggcgattgaaaactgagctattaatacagatggatggg 323
|||||||| ||||||||||| || || ||||| ||||| ||| | || |||||||||||
Sbjct: 1 cgtagtgagcatgaagctagtcgtcgcttgaagactgaactacttattcagatggatggt 60
Query: 324 ttgactaagacagatgagcttgtttttgttctagcagcaacaaatttaccatgggagttg 383
||||| |||||| | || | || ||||| || ||||| |||||| | |||||||| |||
Sbjct: 61 ttgacaaagacaaacgacttggtatttgtacttgcagctacaaatcttccatgggaattg 120
Query: 384 gatgcagcaatgctgcgtcggctggagaagcgtattcttgt 424
|||||||| ||||| || |||| |||||||| ||||||||
Sbjct: 121 gatgcagctatgctccgcaggcttgagaagcgaattcttgt 161
Score = 60.0 bits (30), Expect = 4e-007
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 669 gaagatattgaacttgctttgaggaatacaagaccgtctgctcatcttcatgcacataga 728
||||||||||||||||| || ||||| || || ||||| || ||||| ||||||||| |
Sbjct: 406 gaagatattgaacttgcattaaggaacactaggccgtcagcccatctccatgcacatcgc 465
Query: 729 tacgaaaagttcaaccaagattatgg 754
|| || ||||||||||| || |||||
Sbjct: 466 tatgagaagttcaaccaggactatgg 491
>gb|CW791075.1|CW791075 SP__Ba0075N20.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0075N20 3', DNA sequence
Length = 686
Score = 81.8 bits (41), Expect = 1e-013
Identities = 59/65 (90%)
Strand = Plus / Minus
Query: 572 agcaatgcagcccctaagacgggtaatggcagttcttgaaggcaggaaagaagaggtccc 631
|||||||||||||||||||||| ||||| |||||||||| ||||| ||||||||||||
Sbjct: 686 agcaatgcagcccctaagacggttaatgacagttcttgagagcaggcaagaagaggtcca 627
Query: 632 tgagg 636
|||||
Sbjct: 626 tgagg 622
>gb|AW680176.1|AW680176 WS1_4_A08.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 711
Score = 65.9 bits (33), Expect = 6e-009
Identities = 93/113 (82%)
Strand = Plus / Plus
Query: 312 cagatggatgggttgactaagacagatgagcttgtttttgttctagcagcaacaaattta 371
||||||||||| ||||| |||||| | || | || ||||| || ||||| |||||| |
Sbjct: 6 cagatggatggtttgacaaagacaaacgacttggtatttgtacttgcagctacaaatctt 65
Query: 372 ccatgggagttggatgcagcaatgctgcgtcggctggagaagcgtattcttgt 424
|||||||| ||||||||||| ||||| || |||| |||||||| ||||||||
Sbjct: 66 ccatgggaattggatgcagctatgctccgcaggcttgagaagcgaattcttgt 118
Score = 60.0 bits (30), Expect = 4e-007
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 669 gaagatattgaacttgctttgaggaatacaagaccgtctgctcatcttcatgcacataga 728
||||||||||||||||| || ||||| || || ||||| || ||||| ||||||||| |
Sbjct: 363 gaagatattgaacttgcattaaggaacactaggccgtcagcccatctccatgcacatcgc 422
Query: 729 tacgaaaagttcaaccaagattatgg 754
|| || ||||||||||| || |||||
Sbjct: 423 tatgagaagttcaaccaggactatgg 448
>gb|BI211900.1|BI211900 IP1_62_G07.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 518
Score = 65.9 bits (33), Expect = 6e-009
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 30 aaaggcatattactgtttggtccacctggaacaggaaagacaatgctagctaaagctgtg 89
||||| || ||||| ||||| |||||||| || |||||||||||||| ||||| ||||||
Sbjct: 141 aaaggaattttactttttggcccacctggtacgggaaagacaatgcttgctaaggctgtg 200
Query: 90 gctactgag 98
|| ||||||
Sbjct: 201 gcaactgag 209
>gb|CN146048.1|CN146048 WOUND1_37_D01.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_37_D01_A002 3', mRNA sequence
Length = 823
Score = 65.9 bits (33), Expect = 6e-009
Identities = 93/113 (82%)
Strand = Plus / Plus
Query: 312 cagatggatgggttgactaagacagatgagcttgtttttgttctagcagcaacaaattta 371
||||||||||| ||||| |||||| | || | || ||||| || ||||| |||||| |
Sbjct: 1 cagatggatggtttgacaaagacaaacgacttggtatttgtacttgcagctacaaatctt 60
Query: 372 ccatgggagttggatgcagcaatgctgcgtcggctggagaagcgtattcttgt 424
|||||||| ||||||||||| ||||| || |||| |||||||| ||||||||
Sbjct: 61 ccatgggaattggatgcagctatgctccgcaggcttgagaagcgaattcttgt 113
Score = 60.0 bits (30), Expect = 4e-007
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 669 gaagatattgaacttgctttgaggaatacaagaccgtctgctcatcttcatgcacataga 728
||||||||||||||||| || ||||| || || ||||| || ||||| ||||||||| |
Sbjct: 358 gaagatattgaacttgcattaaggaacactaggccgtcagcccatctccatgcacatcgc 417
Query: 729 tacgaaaagttcaaccaagattatgg 754
|| || ||||||||||| || |||||
Sbjct: 418 tatgagaagttcaaccaggactatgg 443
>gb|CB926705.1|CB926705 ABA1_3_D08.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_3_D08_A012 5', mRNA sequence
Length = 607
Score = 63.9 bits (32), Expect = 2e-008
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 27 tggaaaggcatattactgtttggtccacctggaacaggaaagacaatgctagctaaagct 86
||||||||||| ||||| ||||| || || | ||||||||||||||||| | |||||
Sbjct: 493 tggaaaggcatcttactttttggccccccaaggacaggaaagacaatgctggtcaaagcg 552
Query: 87 gtggctactgagtgcaaaac 106
|| |||||||||||||||||
Sbjct: 553 gttgctactgagtgcaaaac 572
>gb|BZ336405.1|BZ336405 hz34a11.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hz34a11 5', DNA sequence
Length = 629
Score = 60.0 bits (30), Expect = 4e-007
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 669 gaagatattgaacttgctttgaggaatacaagaccgtctgctcatcttcatgcacataga 728
||||||||||||||||| || ||||| || || ||||| || ||||| ||||||||| |
Sbjct: 217 gaagatattgaacttgcattaaggaacactaggccgtcagcccatctccatgcacatcgc 276
Query: 729 tacgaaaagttcaaccaagattatgg 754
|| || ||||||||||| || |||||
Sbjct: 277 tatgagaagttcaaccaggactatgg 302
>gb|CW175964.1|CW175964 104_588_11158234_148_36576_035 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11158234, DNA
sequence
Length = 719
Score = 60.0 bits (30), Expect = 4e-007
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 669 gaagatattgaacttgctttgaggaatacaagaccgtctgctcatcttcatgcacataga 728
||||||||||||||||| || ||||| || || ||||| || ||||| ||||||||| |
Sbjct: 302 gaagatattgaacttgcattaaggaacactaggccgtcagcccatctccatgcacatcgc 361
Query: 729 tacgaaaagttcaaccaagattatgg 754
|| || ||||||||||| || |||||
Sbjct: 362 tatgagaagttcaaccaggactatgg 387
>gb|BE357305.1|BE357305 DG1_148_A08.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 639
Score = 60.0 bits (30), Expect = 4e-007
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 669 gaagatattgaacttgctttgaggaatacaagaccgtctgctcatcttcatgcacataga 728
||||||||||||||||| || ||||| || || ||||| || ||||| ||||||||| |
Sbjct: 341 gaagatattgaacttgcattaaggaacactaggccgtcagcccatctccatgcacatcgc 400
Query: 729 tacgaaaagttcaaccaagattatgg 754
|| || ||||||||||| || |||||
Sbjct: 401 tatgagaagttcaaccaggactatgg 426
Score = 58.0 bits (29), Expect = 1e-006
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 348 tttgttctagcagcaacaaatttaccatgggagttggatgcagcaatgctgcgtcggctg 407
||||| || ||||| |||||| | |||||||| ||||||||||| ||||| || ||||
Sbjct: 20 tttgtacttgcagctacaaatcttccatgggaattggatgcagctatgctccgcaggctt 79
Query: 408 gagaagcgtattcttgt 424
|||||||| ||||||||
Sbjct: 80 gagaagcgaattcttgt 96
>gb|BE359571.1|BE359571 DG1_54_C03.g2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 611
Score = 60.0 bits (30), Expect = 4e-007
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 669 gaagatattgaacttgctttgaggaatacaagaccgtctgctcatcttcatgcacataga 728
||||||||||||||||| || ||||| || || ||||| || ||||| ||||||||| |
Sbjct: 192 gaagatattgaacttgcattaaggaacactaggccgtcagcccatctccatgcacatcgc 251
Query: 729 tacgaaaagttcaaccaagattatgg 754
|| || ||||||||||| || |||||
Sbjct: 252 tatgagaagttcaaccaggactatgg 277
>gb|BG159377.1|BG159377 OV2_7_A10.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 474
Score = 60.0 bits (30), Expect = 4e-007
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 669 gaagatattgaacttgctttgaggaatacaagaccgtctgctcatcttcatgcacataga 728
||||||||||||||||| || ||||| || || ||||| || ||||| ||||||||| |
Sbjct: 24 gaagatattgaacttgcattaaggaacactaggccgtcagcccatctccatgcacatcgc 83
Query: 729 tacgaaaagttcaaccaagattatgg 754
|| || ||||||||||| || |||||
Sbjct: 84 tatgagaagttcaaccaggactatgg 109
>gb|BG356706.1|BG356706 OV2_26_H07.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 518
Score = 60.0 bits (30), Expect = 4e-007
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 669 gaagatattgaacttgctttgaggaatacaagaccgtctgctcatcttcatgcacataga 728
||||||||||||||||| || ||||| || || ||||| || ||||| ||||||||| |
Sbjct: 222 gaagatattgaacttgcattaaggaacactaggccgtcagcccatctccatgcacatcgc 281
Query: 729 tacgaaaagttcaaccaagattatgg 754
|| || ||||||||||| || |||||
Sbjct: 282 tatgagaagttcaaccaggactatgg 307
>gb|BG933489.1|BG933489 WS1_4_A08.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 409
Score = 60.0 bits (30), Expect = 4e-007
Identities = 108/134 (80%)
Strand = Plus / Plus
Query: 291 ttgaaaactgagctattaatacagatggatgggttgactaagacagatgagcttgttttt 350
||||| ||||| ||| | || ||||||||||| ||||| |||||| | || | || |||
Sbjct: 9 ttgaagactgaactacttattcagatggatggtttgacaaagacaaacgacttggtattt 68
Query: 351 gttctagcagcaacaaatttaccatgggagttggatgcagcaatgctgcgtcggctggag 410
|| || ||||| |||||| | ||||| || ||||||||||| ||||| || |||| |||
Sbjct: 69 gtacttgcagctacaaatcttccatgagaattggatgcagctatgctccgcaggcttgag 128
Query: 411 aagcgtattcttgt 424
||||| ||||||||
Sbjct: 129 aagcgaattcttgt 142
>gb|BG054290.1|BG054290 OV2_4_F12.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 599
Score = 54.0 bits (27), Expect = 2e-005
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 669 gaagatattgaacttgctttgaggaatacaagaccgtctgctcatcttcatgcacataga 728
||||||||||||||||| || ||||| | || ||||| || ||||| ||||||||| |
Sbjct: 262 gaagatattgaacttgcattaaggaacantaggccgtcagcccatctccatgcacatcgc 321
Query: 729 tacgaaaagttcaaccaagattatgg 754
|| || ||||||||||| || |||||
Sbjct: 322 tatgagaagttcaaccaggactatgg 347
>gb|CW338321.1|CW338321 104_838_11484683_116_36122_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11484683, DNA
sequence
Length = 525
Score = 52.0 bits (26), Expect = 9e-005
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 669 gaagatattgaacttgctttgaggaatacaagaccgtctgctcatcttcatgcacataga 728
||||||||||||||||| || ||||| || || |||| || ||||| ||||||||| |
Sbjct: 59 gaagatattgaacttgcattaaggaacactagggcgtcagcccatctccatgcacattgc 118
Query: 729 tacgaaaagttcaaccaagattatgg 754
|| || ||||||||||| || |||||
Sbjct: 119 tatgagaagttcaaccaggactatgg 144
>gb|BE600718.1|BE600718 PI1_91_G08.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 462
Score = 52.0 bits (26), Expect = 9e-005
Identities = 60/70 (85%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 30 aaaggcatattactgtttggtccacctggaacag-gaaagacaatgctagctaaagctgt 88
||||| || ||||| ||||| |||||||| || | ||||||||||||| ||||| |||||
Sbjct: 18 aaaggaattttactttttggcccacctggtacggngaaagacaatgcttgctaaggctgt 77
Query: 89 ggctactgag 98
||| ||||||
Sbjct: 78 ggcaactgag 87
>gb|BZ337170.1|BZ337170 ia85g02.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ia85g02 5', DNA sequence
Length = 713
Score = 50.1 bits (25), Expect = 4e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 67 agacaatgctagctaaagctgtggctactgagtgcaaaaca 107
|||||||||| || ||||| || ||||||||||||||||||
Sbjct: 636 agacaatgctggcaaaagcggttgctactgagtgcaaaaca 676
>gb|CD462668.1|CD462668 ETH1_39_E01.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_39_E01_A002 3', mRNA sequence
Length = 480
Score = 50.1 bits (25), Expect = 4e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 522 aaaactgaaggatattctggctctgatat 550
|||||||||||||||||||| ||||||||
Sbjct: 32 aaaactgaaggatattctgggtctgatat 60
>gb|CF485475.1|CF485475 POL1_31_F05.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_31_F05_A002 5', mRNA sequence
Length = 702
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 tggtccacctggaacaggaaagac 70
||||||||||||||||||||||||
Sbjct: 377 tggtccacctggaacaggaaagac 400
>gb|BM324659.1|BM324659 PIC1_33_H09.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 570
Score = 46.1 bits (23), Expect = 0.006
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 30 aaaggcatattactgtttggtccacctggaacaggaaagacaatgctagctaaagctgt 88
||||| ||||| || |||||||||||||| || || ||||| ||||| || ||||||||
Sbjct: 452 aaagggatattgctttttggtccacctggcactggtaagaccatgcttgccaaagctgt 510
>gb|BM322502.1|BM322502 PIC1_5_F04.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 613
Score = 44.1 bits (22), Expect = 0.022
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 30 aaaggcatattactgtttggtccacctggaacaggaaa 67
||||| ||||| || |||||||| ||||||||||||||
Sbjct: 203 aaaggtatattgctttttggtcctcctggaacaggaaa 240
>gb|CW109036.1|CW109036 104_481_11097853_116_34505_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11097853, DNA
sequence
Length = 228
Score = 42.1 bits (21), Expect = 0.087
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 142 gcaagtggcgcggtgactcgg 162
|||||||||||||||||||||
Sbjct: 144 gcaagtggcgcggtgactcgg 124
>gb|BF481081.1|BF481081 FM1_16_B09.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 536
Score = 40.1 bits (20), Expect = 0.34
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 43 tgtttggtccacctggaacaggaaagac 70
||||||||||||| || |||||||||||
Sbjct: 83 tgtttggtccaccaggcacaggaaagac 110
>gb|CD462545.1|CD462545 ETH1_38_D03.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_38_D03_A002 3', mRNA sequence
Length = 723
Score = 40.1 bits (20), Expect = 0.34
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 45 tttggtccacctggaacaggaaagacaatgctagctaaagctgt 88
|||||||||||||| | ||||| |||||||| || ||||||||
Sbjct: 367 tttggtccacctgggaatggaaaaacaatgcttgccaaagctgt 410
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 231,238
Number of Sequences: 832831
Number of extensions: 231238
Number of successful extensions: 59366
Number of sequences better than 0.5: 31
Number of HSP's better than 0.5 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59305
Number of HSP's gapped (non-prelim): 53
length of query: 893
length of database: 491,359,669
effective HSP length: 20
effective length of query: 873
effective length of database: 474,703,049
effective search space: 414415761777
effective search space used: 414415761777
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)