BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3067213.2.1
(924 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN145002.1|CN145002 WOUND1_26_E07.b2_A002 Wounded leaves... 1197 0.0
gb|CF488456.1|CF488456 POL1_50_C12.b1_A002 Pollen Sorghum b... 805 0.0
gb|CF488534.1|CF488534 POL1_50_C12.g1_A002 Pollen Sorghum b... 666 0.0
gb|CN145086.1|CN145086 WOUND1_26_E07.g1_A002 Wounded leaves... 412 e-113
gb|CW056099.1|CW056099 104_297_10517503_114_30172 Sorghum m... 208 7e-052
gb|CD227944.1|CD227944 CCC1_56_E05.g1_A007 Callus culture/c... 137 2e-030
gb|CX612583.1|CX612583 GABR1_3_F09.b1_A002 GA- or brassinol... 117 2e-024
gb|CW435699.1|CW435699 fsbb001f151p15k0 Sorghum methylation... 94 3e-017
gb|CX612665.1|CX612665 GABR1_3_F09.g1_A002 GA- or brassinol... 92 1e-016
gb|CW479409.1|CW479409 fsbb001f237o07k0 Sorghum methylation... 90 4e-016
gb|CD227672.1|CD227672 CCC1_53_D08.b1_A007 Callus culture/c... 84 3e-014
gb|CX608084.1|CX608084 ANR1_32_C02.g1_A002 Anaerobic roots ... 72 1e-010
gb|CX608003.1|CX608003 ANR1_32_C02.b1_A002 Anaerobic roots ... 52 9e-005
gb|AW564073.1|AW564073 LG1_282_A07.b1_A002 Light Grown 1 (L... 50 4e-004
gb|BG102344.1|BG102344 RHIZ2_22_F05.b1_A003 Rhizome2 (RHIZ2... 50 4e-004
gb|CW486065.1|CW486065 fsbb001f249c06f0 Sorghum methylation... 44 0.023
gb|BG159615.1|BG159615 OV2_6_G12.b1_A002 Ovary 2 (OV2) Sorg... 44 0.023
gb|BM324254.1|BM324254 PIC1_26_B07.b1_A002 Pathogen-infecte... 44 0.023
gb|CD228570.1|CD228570 CCC1_8_A06.g1_A007 Callus culture/ce... 44 0.023
gb|CN140055.1|CN140055 OX1_33_F07.g1_A002 Oxidatively-stres... 44 0.023
gb|CL170465.1|CL170465 104_371_10813837_116_31791_157 Sorgh... 40 0.35
gb|CL170466.1|CL170466 104_371_10813837_148_31790_157 Sorgh... 40 0.35
gb|CW138735.1|CW138735 104_528_11134854_116_34889_021 Sorgh... 40 0.35
gb|CW138736.1|CW138736 104_528_11134854_148_34893_021 Sorgh... 40 0.35
>gb|CN145002.1|CN145002 WOUND1_26_E07.b2_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_26_E07_A002 3', mRNA sequence
Length = 794
Score = 1197 bits (604), Expect = 0.0
Identities = 747/790 (94%), Gaps = 11/790 (1%)
Strand = Plus / Minus
Query: 29 atgagatgcttctttcttgcatcggatgcagcacaaagtacaaaccatggtccagagtcc 88
|||||||||||||||||||||| || || || ||||||||||||||||||| ||||||||
Sbjct: 785 atgagatgcttctttcttgcatagggtgaagtacaaagtacaaaccatggtacagagtcc 726
Query: 89 agcaaataatcaaaccgtgtgagtcaactacaccaactt-aatatacagatactagtgct 147
|||||| | ||||||| || |||||| ||||| | |||| |||||||||||||| |||||
Sbjct: 725 agcaaacagtcaaaccatgcgagtcacctacatctactttaatatacagatacttgtgct 666
Query: 148 cggaatctacagtctagtttgccgtactcgtggtagcctgtatgaaaatgttaacgatca 207
|||| |||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct: 665 cgga-------gtctagtttgccgtactcgtggtagcctgtatgaaaatgtta-ctagca 614
Query: 208 tc-agcacaaaggtaa-acaaagggctcgtagcagcttcagcttctgcttggtccggttc 265
| || | |||||| | ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 613 accagtagaaaggttacacaaagggctcgtagcagcttcaacttctgcttggtccggttc 554
Query: 266 tgtccccaaggatcatctgtgggtcgagggttgacagaatttggggcatcgacataccac 325
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 553 tgtccccaaggatcatctgcgggtcgagggttgacagaatttggggcattgacataccac 494
Query: 326 cagatacaacaatttcgatgccttcacgcacagaaagatttggccttatgacatcctttg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 cagatacaacaatttcgatgccttcacgcacagaaagatttggccttatgacatcctttg 434
Query: 386 aattcaccatgaagatatcaccaatgtaaagatggttcgttgggacatagacgcagtaaa 445
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 433 aattcaccatgaagatatcaccaatgtaaagatggttcgttggcacatagacacagtaaa 374
Query: 446 gatcttcttgaccagaataactctggagggatactgacgatgtgatgaaaccaaacgcat 505
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 373 gatcttcttgaccagaataactctggagggatactgacgatgtaatgaaaccaaacgcat 314
Query: 506 attctccaacacgaggatgccttatgatgaccacttccttgaacgcctgtttgttctgat 565
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 313 attctccaacacgaggatgccttatgatgaccacttccttgaatgcctgtttgttctgat 254
Query: 566 ctggtgatattgcagcactaatttgcttcgatgcattgtagatatgacgaacaagaggca 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ctggtgatattgcagcactaatttgcttcgatgcattgtagatatgacgaacaagaggca 194
Query: 626 tgcgcttaataatccactcgccaaggctaaggacagatgccccaagccaagatgacataa 685
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 193 tgcgcttaataatccactcgccaaggctaaggacagatgctccaacccaagatgacataa 134
Query: 686 agactccgatcaaaaatatgaaagtaacagatgtgacaaagccaagaccgaatatgttga 745
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 133 agactccaatcaaaaatatgaaagtaacagatgtgatgaagccaagaccgaatatgttga 74
Query: 746 ttcccagttgagcatagattggagagaagaatccatcaacaaaatgaatgaaccaccagg 805
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 73 ttcccagttgagcatagattggagagaagaatccatcaacaaaatggatgaaccaccagg 14
Query: 806 tgatgtagaa 815
||||||||||
Sbjct: 13 tgatgtagaa 4
>gb|CF488456.1|CF488456 POL1_50_C12.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_50_C12_A002 3', mRNA sequence
Length = 564
Score = 805 bits (406), Expect = 0.0
Identities = 531/568 (93%), Gaps = 11/568 (1%)
Strand = Plus / Minus
Query: 29 atgagatgcttctttcttgcatcggatgcagcacaaagtacaaaccatggtccagagtcc 88
|||||||||||||||||||||| || || || ||||||||||||||||||| ||||||||
Sbjct: 560 atgagatgcttctttcttgcatagggtgaagtacaaagtacaaaccatggtacagagtcc 501
Query: 89 agcaaataatcaaaccgtgtgagtcaactacaccaactt-aatatacagatactagtgct 147
|||||| | ||||||| || |||||| ||||| | |||| |||||||||||||| |||||
Sbjct: 500 agcaaacagtcaaaccatgcgagtcacctacatctactttaatatacagatacttgtgct 441
Query: 148 cggaatctacagtctagtttgccgtactcgtggtagcctgtatgaaaatgttaacgatca 207
|||| |||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct: 440 cgga-------gtctagtttgccgtactcgtggtagcctgtatgaaaatgtta-ctagca 389
Query: 208 tc-agcacaaagg-taaacaaagggctcgtagcagcttcagcttctgcttggtccggttc 265
| || | ||||| || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 388 accagtagaaagggtacacaaagggctcgtagcagcttcaacttctgcttggtccggttc 329
Query: 266 tgtccccaaggatcatctgtgggtcgagggttgacagaatttggggcatcgacataccac 325
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 328 tgtccccaaggatcatctgcgggtcgagggttgacagaatttggggcattgacataccac 269
Query: 326 cagatacaacaatttcgatgccttcacgcacagaaagatttggccttatgacatcctttg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 cagatacaacaatttcgatgccttcacgcacagaaagatttggccttatgacatcctttg 209
Query: 386 aattcaccatgaagatatcaccaatgtaaagatggttcgttgggacatagacgcagtaaa 445
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 208 aattcaccatgaagatatcaccaatgtaaagatggttcgttggcacatagacacagtaaa 149
Query: 446 gatcttcttgaccagaataactctggagggatactgacgatgtgatgaaaccaaacgcat 505
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 148 gatcttcttgaccagaataactctggagggatactgacgatgtaatgaaaccaaacgcat 89
Query: 506 attctccaacacgaggatgccttatgatgaccacttccttgaacgcctgtttgttctgat 565
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 88 attctccaacacgaggatgccttatgatgaccacttccttgaatgcctgtttgttctgat 29
Query: 566 ctggtgatattgcagcactaatttgctt 593
||||||||||||||||||||||||||||
Sbjct: 28 ctggtgatattgcagcactaatttgctt 1
>gb|CF488534.1|CF488534 POL1_50_C12.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_50_C12_A002 5', mRNA sequence
Length = 636
Score = 666 bits (336), Expect = 0.0
Identities = 366/376 (97%)
Strand = Plus / Minus
Query: 528 tatgatgaccacttccttgaacgcctgtttgttctgatctggtgatattgcagcactaat 587
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tatgatgaccacttccttgaatgcctgtttgttctgatctggtgatattgcagcactaat 577
Query: 588 ttgcttcgatgcattgtagatatgacgaacaagaggcatgcgcttaataatccactcgcc 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ttgcttcgatgcattgtagatatgacgaacaagaggcatgcgcttaataatccactcgcc 517
Query: 648 aaggctaaggacagatgccccaagccaagatgacataaagactccgatcaaaaatatgaa 707
|||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 516 aaggctaaggacagatgctccaacccaagatgacataaagactccaatcaaaaatatgaa 457
Query: 708 agtaacagatgtgacaaagccaagaccgaatatgttgattcccagttgagcatagattgg 767
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 agtaacagatgtgatgaagccaagaccgaatatgttgattcccagttgagcatagattgg 397
Query: 768 agagaagaatccatcaacaaaatgaatgaaccaccaggtgatgtagaacgttattgctat 827
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 396 agagaagaatccatcaacaaaatggatgaaccaccaggtgatgtagaatgttattgctat 337
Query: 828 ggggaagagaattacacatccagtcatgaacttctttgaagcccaactgcggacaacctt 887
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 336 ggggaagagaattacacatccagtcatgaacttctttgaagcccaactacggacgacctt 277
Query: 888 atggaaagcctcgcgg 903
||||||||||||||||
Sbjct: 276 atggaaagcctcgcgg 261
>gb|CN145086.1|CN145086 WOUND1_26_E07.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_26_E07_A002 5', mRNA sequence
Length = 501
Score = 412 bits (208), Expect = e-113
Identities = 238/248 (95%)
Strand = Plus / Minus
Query: 656 ggacagatgccccaagccaagatgacataaagactccgatcaaaaatatgaaagtaacag 715
|||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 501 ggacagatgctccaacccaagatgacataaagactccaatcaaaaatatgaaagtaacag 442
Query: 716 atgtgacaaagccaagaccgaatatgttgattcccagttgagcatagattggagagaaga 775
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 atgtgatgaagccaagaccgaatatgttgattcccagttgagcctagattggagagaaga 382
Query: 776 atccatcaacaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggggaaga 835
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 atccatcaacaaaatggatgaaccaccaggtgatgtagaatgttattgctatggggaaga 322
Query: 836 gaattacacatccagtcatgaacttctttgaagcccaactgcggacaaccttatggaaag 895
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 321 gaattacacatccagtcatgaacttctttgaagcccaactacggacgaccttatggaaag 262
Query: 896 cctcgcgg 903
||||||||
Sbjct: 261 cctcgcgg 254
>gb|CW056099.1|CW056099 104_297_10517503_114_30172 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10517503, DNA
sequence
Length = 630
Score = 208 bits (105), Expect = 7e-052
Identities = 111/113 (98%)
Strand = Plus / Plus
Query: 732 accgaatatgttgattcccagttgagcatagattggagagaagaatccatcaacaaaatg 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 accgaatatgttgattcccagttgagcatagattggagagaagaatccatcaacaaaatg 211
Query: 792 aatgaaccaccaggtgatgtagaacgttattgctatggggaagagaattacac 844
||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 212 gatgaaccaccaggtgatgtagaatgttattgctatggggaagagaattacac 264
>gb|CD227944.1|CD227944 CCC1_56_E05.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_56_E05_A007 5', mRNA sequence
Length = 646
Score = 137 bits (69), Expect = 2e-030
Identities = 269/336 (80%)
Strand = Plus / Minus
Query: 568 ggtgatattgcagcactaatttgcttcgatgcattgtagatatgacgaacaagaggcatg 627
||||| || |||||||| ||||||| ||||||| || ||||| ||||||| |||||
Sbjct: 643 ggtgaaatggcagcactgatttgctnagatgcatcataaatatggcgaacaaatggcatt 584
Query: 628 cgcttaataatccactcgccaaggctaaggacagatgccccaagccaagatgacataaag 687
|| || || | |||||| || || | ||||| ||||||||| |||||||||||||| ||
Sbjct: 583 cgttttatgaaccactctccgagaccaaggatagatgcccccagccaagatgacatgaat 524
Query: 688 actccgatcaaaaatatgaaagtaacagatgtgacaaagccaagaccgaatatgttgatt 747
|| || | || || ||||||| | ||||| ||||| ||||| || ||||| ||||||
Sbjct: 523 acaccaaccacgaaaatgaaagatatcgatgttacaaaaccaagcccaaatattttgatt 464
Query: 748 cccagttgagcatagattggagagaagaatccatcaacaaaatgaatgaaccaccaggtg 807
|||| |||||||| ||||| ||||| || ||||| |||||| ||| ||||||||| ||
Sbjct: 463 cccaagtgagcatatattggggagaaaaagccatccacaaaacgaaagaaccaccatgtc 404
Query: 808 atgtagaacgttattgctatggggaagagaattacacatccagtcatgaacttctttgaa 867
| ||||| || | ||| || |||||||| || |||||||| |||||||||||||| ||
Sbjct: 403 acatagaatgtaactgcaattgggaagaggatgacacatccggtcatgaacttcttggac 344
Query: 868 gcccaactgcggacaaccttatggaaagcctcgcgg 903
||||| || | |||||||||||||| |||||||||
Sbjct: 343 gcccagctatgcacaaccttatggaacgcctcgcgg 308
>gb|CX612583.1|CX612583 GABR1_3_F09.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_3_F09_A002 3', mRNA sequence
Length = 724
Score = 117 bits (59), Expect = 2e-024
Identities = 203/251 (80%)
Strand = Plus / Minus
Query: 523 tgccttatgatgaccacttccttgaacgcctgtttgttctgatctggtgatattgcagca 582
||||| |||||||||||||||||||| || || ||||| ||||| ||||| || ||||||
Sbjct: 256 tgcctaatgatgaccacttccttgaatgcatgcttgttttgatcaggtgaaatggcagca 197
Query: 583 ctaatttgcttcgatgcattgtagatatgacgaacaagaggcatgcgcttaataatccac 642
|| |||||||| ||||||| || ||||| ||||||| ||||| || || || | ||||
Sbjct: 196 ctgatttgcttagatgcatcataaatatggcgaacaaatggcattcgttttatgaaccac 137
Query: 643 tcgccaaggctaaggacagatgccccaagccaagatgacataaagactccgatcaaaaat 702
|| || || | ||||| ||||||||| |||||||||||||| || || || | || ||
Sbjct: 136 tctccgagaccaaggatagatgcccccagccaagatgacatgaatacaccaaccacgaaa 77
Query: 703 atgaaagtaacagatgtgacaaagccaagaccgaatatgttgattcccagttgagcatag 762
||||||| | ||||| ||||| ||||| || ||||| |||||||||| ||||||||
Sbjct: 76 atgaaagatatcgatgttacaaaaccaagcccaaatattttgattcccaagtgagcatat 17
Query: 763 attggagagaa 773
||||| |||||
Sbjct: 16 attggggagaa 6
>gb|CW435699.1|CW435699 fsbb001f151p15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f151p15, DNA
sequence
Length = 575
Score = 93.7 bits (47), Expect = 3e-017
Identities = 53/55 (96%)
Strand = Plus / Plus
Query: 844 catccagtcatgaacttctttgaagcccaactgcggacaaccttatggaaagcct 898
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 346 catccagtcatgaacttctttgaagcccaactacggacgaccttatggaaagcct 400
>gb|CX612665.1|CX612665 GABR1_3_F09.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_3_F09_A002 5', mRNA sequence
Length = 570
Score = 91.7 bits (46), Expect = 1e-016
Identities = 199/250 (79%)
Strand = Plus / Minus
Query: 654 aaggacagatgccccaagccaagatgacataaagactccgatcaaaaatatgaaagtaac 713
||||| ||||||||| |||||||||||||| || || || | || || ||||||| |
Sbjct: 541 aaggatagatgcccccagccaagatgacatgaatacaccaaccacgaaaatgaaagatat 482
Query: 714 agatgtgacaaagccaagaccgaatatgttgattcccagttgagcatagattggagagaa 773
||||| ||||| || || || ||||| ||||||||| |||||||| ||||| |||||
Sbjct: 481 tgatgttacaaaacccagcccaaatattatgattcccaagtgagcatatattggggagaa 422
Query: 774 gaatccatcaacaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggggaa 833
|| ||||| |||||| ||| ||||||||| || | ||||| || | || || ||||
Sbjct: 421 aaagccatccacaaaacgaaagaaccaccatgtcacatagaatgtaaccgcaattcggaa 362
Query: 834 gagaattacacatccagtcatgaacttctttgaagcccaactgcggacaaccttatggaa 893
||| || |||||||| |||||||||||||| || ||||| || | ||||||||||||||
Sbjct: 361 gaggatgacacatccggtcatgaacttcttggacgcccagctatgcacaaccttatggaa 302
Query: 894 agcctcgcgg 903
|||||||||
Sbjct: 301 cgcctcgcgg 292
>gb|CW479409.1|CW479409 fsbb001f237o07k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f237o07, DNA
sequence
Length = 604
Score = 89.7 bits (45), Expect = 4e-016
Identities = 51/53 (96%)
Strand = Plus / Plus
Query: 846 tccagtcatgaacttctttgaagcccaactgcggacaaccttatggaaagcct 898
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 35 tccagtcatgaacttctttgaagcccaactacggacgaccttatggaaagcct 87
>gb|CD227672.1|CD227672 CCC1_53_D08.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_53_D08_A007 3', mRNA sequence
Length = 655
Score = 83.8 bits (42), Expect = 3e-014
Identities = 171/214 (79%)
Strand = Plus / Minus
Query: 406 ccaatgtaaagatggttcgttgggacatagacgcagtaaagatcttcttgaccagaataa 465
||||| ||||||||||| ||||| ||||| || ||||| | | ||||| || |||||||
Sbjct: 241 ccaatataaagatggttggttggaacataaacacagtacatcttttcttcactagaataa 182
Query: 466 ctctggagggatactgacgatgtgatgaaaccaaacgcatattctccaacacgaggatgc 525
| ||| || ||| ||| ||||| || ||||| |||||||| |||| | || |||
Sbjct: 181 ccctgaagtagaacttccgaagtgataaatccaaatgcatattcgccaattcttgggtgc 122
Query: 526 cttatgatgaccacttccttgaacgcctgtttgttctgatctggtgatattgcagcacta 585
|| |||||||||||||||||||| || || ||||| ||||| ||||| || ||||||||
Sbjct: 121 ctaatgatgaccacttccttgaatgcatgcttgttttgatcaggtgaaatggcagcactg 62
Query: 586 atttgcttcgatgcattgtagatatgacgaacaa 619
|||||||| ||||||| || ||||| |||||||
Sbjct: 61 atttgcttagatgcatcataaatatggcgaacaa 28
>gb|CX608084.1|CX608084 ANR1_32_C02.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_32_C02_A002 5', mRNA sequence
Length = 610
Score = 71.9 bits (36), Expect = 1e-010
Identities = 135/168 (80%)
Strand = Plus / Minus
Query: 736 aatatgttgattcccagttgagcatagattggagagaagaatccatcaacaaaatgaatg 795
||||| |||||||||| ||||||| || || ||||| || ||||| |||||| ||| |
Sbjct: 460 aatattttgattcccaagcgagcatatatcggggagaaaaagccatccacaaaacgaaag 401
Query: 796 aaccaccaggtgatgtagaacgttattgctatggggaagagaattacacatccagtcatg 855
|||||||| || | ||||| || | ||| || |||||||| || |||||||| ||||||
Sbjct: 400 aaccaccatgtcacatagaatgtaactgcaattgggaagaggatgacacatccggtcatg 341
Query: 856 aacttctttgaagcccaactgcggacaaccttatggaaagcctcgcgg 903
||||||| || ||||| || | |||||| ||||||| |||||||||
Sbjct: 340 aacttctaggacgcccagctatgcacaaccatatggaacgcctcgcgg 293
>gb|CX608003.1|CX608003 ANR1_32_C02.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_32_C02_A002 3', mRNA sequence
Length = 760
Score = 52.0 bits (26), Expect = 9e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 523 tgccttatgatgaccacttccttgaacgcctgtttgttctgatctg 568
||||| |||||||||||||||||||| || || ||||| |||||||
Sbjct: 144 tgcctaatgatgaccacttccttgaatgcatgcttgttttgatctg 99
>gb|AW564073.1|AW564073 LG1_282_A07.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 490
Score = 50.1 bits (25), Expect = 4e-004
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 778 ccatcaacaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggggaagaga 837
||||| ||||| ||||| |||||||| |||||| |||| || | || || ||||| |||
Sbjct: 355 ccatcgacaaattgaataaaccaccaagtgatgaagaatgtgacagcaattgggaaaaga 296
Query: 838 attacacatccagtcat 854
| |||||||||||||||
Sbjct: 295 actacacatccagtcat 279
>gb|BG102344.1|BG102344 RHIZ2_22_F05.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 456
Score = 50.1 bits (25), Expect = 4e-004
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 778 ccatcaacaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggggaagaga 837
||||||||||| ||||| |||||||| |||||| |||| || | || || ||||| |||
Sbjct: 406 ccatcaacaaattgaataaaccaccaagtgatgaagaatgtgacagcaattgggaaaaga 347
Query: 838 attacacatccagtcat 854
| ||||||||||||||
Sbjct: 346 accacacatccagtcat 330
>gb|CW486065.1|CW486065 fsbb001f249c06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f249c06, DNA
sequence
Length = 783
Score = 44.1 bits (22), Expect = 0.023
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 654 aaggacagatgccccaagccaagatgacat 683
||||| ||||||||| ||||||||||||||
Sbjct: 782 aaggatagatgcccccagccaagatgacat 753
>gb|BG159615.1|BG159615 OV2_6_G12.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 515
Score = 44.1 bits (22), Expect = 0.023
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 778 ccatcaacaaaatgaatgaaccaccaggtgatgtagaa 815
||||||||||| ||||| |||||||| |||||| ||||
Sbjct: 477 ccatcaacaaattgaataaaccaccatgtgatgaagaa 440
>gb|BM324254.1|BM324254 PIC1_26_B07.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 558
Score = 44.1 bits (22), Expect = 0.023
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 778 ccatcaacaaaatgaatgaaccaccaggtgatgtagaa 815
||||||||||| ||||| |||||||| |||||| ||||
Sbjct: 266 ccatcaacaaattgaataaaccaccatgtgatgaagaa 229
>gb|CD228570.1|CD228570 CCC1_8_A06.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_8_A06_A007 5', mRNA sequence
Length = 640
Score = 44.1 bits (22), Expect = 0.023
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 778 ccatcaacaaaatgaatgaaccaccaggtgatgtagaa 815
||||||||||| ||||| |||||||| |||||| ||||
Sbjct: 323 ccatcaacaaattgaataaaccaccatgtgatgaagaa 286
>gb|CN140055.1|CN140055 OX1_33_F07.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_33_F07_A002 5', mRNA sequence
Length = 431
Score = 44.1 bits (22), Expect = 0.023
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 778 ccatcaacaaaatgaatgaaccaccaggtgatgtagaa 815
||||||||||| ||||| |||||||| |||||| ||||
Sbjct: 354 ccatcaacaaattgaataaaccaccatgtgatgaagaa 317
>gb|CL170465.1|CL170465 104_371_10813837_116_31791_157 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10813837, DNA
sequence
Length = 714
Score = 40.1 bits (20), Expect = 0.35
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 770 agaagaatccatcaacaaaa 789
||||||||||||||||||||
Sbjct: 459 agaagaatccatcaacaaaa 478
>gb|CL170466.1|CL170466 104_371_10813837_148_31790_157 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10813837, DNA
sequence
Length = 738
Score = 40.1 bits (20), Expect = 0.35
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 770 agaagaatccatcaacaaaa 789
||||||||||||||||||||
Sbjct: 714 agaagaatccatcaacaaaa 695
>gb|CW138735.1|CW138735 104_528_11134854_116_34889_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11134854, DNA
sequence
Length = 634
Score = 40.1 bits (20), Expect = 0.35
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 770 agaagaatccatcaacaaaa 789
||||||||||||||||||||
Sbjct: 456 agaagaatccatcaacaaaa 475
>gb|CW138736.1|CW138736 104_528_11134854_148_34893_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11134854, DNA
sequence
Length = 674
Score = 40.1 bits (20), Expect = 0.35
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 770 agaagaatccatcaacaaaa 789
||||||||||||||||||||
Sbjct: 421 agaagaatccatcaacaaaa 402
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 225,955
Number of Sequences: 832831
Number of extensions: 225955
Number of successful extensions: 62124
Number of sequences better than 0.5: 24
Number of HSP's better than 0.5 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62081
Number of HSP's gapped (non-prelim): 40
length of query: 924
length of database: 491,359,669
effective HSP length: 20
effective length of query: 904
effective length of database: 474,703,049
effective search space: 429131556296
effective search space used: 429131556296
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)