BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3067043.2.1
(834 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF486896.1|CF486896 POL1_40_B05.g1_A002 Pollen Sorghum b... 961 0.0
gb|CD427426.1|CD427426 SA1_30_H03.g1_A002 Salicylic acid-tr... 920 0.0
gb|CF071776.1|CF071776 FE1_18_E12.g1_A002 Iron-deficient se... 797 0.0
gb|CF480460.1|CF480460 POL1_65_H09.g1_A002 Pollen Sorghum b... 791 0.0
gb|CF480373.1|CF480373 POL1_65_H09.b1_A002 Pollen Sorghum b... 783 0.0
gb|CD427401.1|CD427401 SA1_30_H03.b1_A002 Salicylic acid-tr... 759 0.0
gb|CF481134.1|CF481134 POL1_70_E04.b1_A002 Pollen Sorghum b... 745 0.0
gb|CF481222.1|CF481222 POL1_70_E04.g1_A002 Pollen Sorghum b... 739 0.0
gb|AI724645.1|AI724645 RHIZ1_11_B12.y2_A001 Rhizome1 (RHIZ1... 698 0.0
gb|AW922618.1|AW922618 DG1_46_C02.b1_A002 Dark Grown 1 (DG1... 593 e-167
gb|CW334587.1|CW334587 104_833_11482580_116_36073_078 Sorgh... 430 e-119
gb|CL189662.1|CL189662 104_407_10905528_116_32480_094 Sorgh... 228 6e-058
gb|CW474600.1|CW474600 fsbb001f230i18k0 Sorghum methylation... 188 6e-046
gb|CW464469.1|CW464469 fsbb001f213l17f0 Sorghum methylation... 151 1e-034
gb|CL189661.1|CL189661 104_407_10905528_114_32476_094 Sorgh... 129 4e-028
gb|CW334588.1|CW334588 104_833_11482580_148_36072_078 Sorgh... 90 4e-016
gb|CW140838.1|CW140838 104_531_11135993_148_34922_071 Sorgh... 40 0.32
gb|CW430712.1|CW430712 fsbb001f144i18k0 Sorghum methylation... 40 0.32
gb|CN152138.1|CN152138 WOUND1_80_C01.b1_A002 Wounded leaves... 40 0.32
gb|CX609893.1|CX609893 ANR1_15_H06.b1_A002 Anaerobic roots ... 40 0.32
>gb|CF486896.1|CF486896 POL1_40_B05.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_40_B05_A002 5', mRNA sequence
Length = 725
Score = 961 bits (485), Expect = 0.0
Identities = 642/693 (92%), Gaps = 10/693 (1%)
Strand = Plus / Minus
Query: 1 gggaagcagaggccctcaacgcaaaggctngacattatcaaaagccagaagatgttccat 60
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 722 gggaagcagaggccctcaacgcgaaggctggacattatcaaaagccagaagatgttccat 663
Query: 61 tcttccctcaagatctaccctcacctctctttcctacaaagccttccccaaaggtctt-g 119
|||||||||||||||| ||||| |||||||||||||| |||||||||||||||| ||| |
Sbjct: 662 tcttccctcaagatcttccctcgcctctctttcctaccaagccttccccaaagggctttg 603
Query: 120 cacccttttgcttcattggtcaccgtgaatgatgcaatatggaaaatgtattttgatgaa 179
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 602 cacccttttgctttgttggtcactgtgaatgatgcaatatggaaaatgtattttgatgaa 543
Query: 180 ttgctcccgttattcactgttgatggtgatgatggcagctatgcacaaacagttgcactg 239
|||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 542 ttgctcccattattcactgttgatggtgatgatggtaactatgcacaaacagttgcactg 483
Query: 240 gatttagcgtgtctgcaggttctatcacaaagaattcatattggtaaatatgttgctgag 299
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gattttgcgtgtctgcaggttctatcacaaagaattcatattggtaaatatgttgctgag 423
Query: 300 gtgaagttcaaagacgctcctcaagaatatagtcgactaataaaagaaaaggacagcaat 359
|| ||||||||||| ||||||||||| ||||||||| ||||||||| |||||||||||||
Sbjct: 422 gtcaagttcaaagatgctcctcaagattatagtcgattaataaaagcaaaggacagcaat 363
Query: 360 tctctgatggatatgctgacattcaaggctgtggaagagaaggtcaagaagagagtagag 419
||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 362 tctttgatggatctgctgacattcaaggctgtggaagagaaggttaagaagagagtagag 303
Query: 420 aagaaggctaggacgttcgggcagaacgtcaccttggatgacaatgccactgctggtgac 479
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 302 aagaaggccaggaccttcgggcagaacgtcaccttggaggacaatgccactgccagtgac 243
Query: 480 agcgagtgcaaggtcgatcccaaagtgctctccaagctgtatgatcagtgggtgatgcca 539
||||| ||||||||| |||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 242 agcgaatgcaaggtcaatcctaaagtgctctccaagctgtatgatcagtgggtaatgcca 183
Query: 540 ctgaccaaggatgtcgaagtcgagtatctcctgcgccgcctcgactgatcagtgatcacc 599
||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 182 ctgaccaaggacgtcgaagtcgagtatctcctgcgccgcctcgactgatca--------c 131
Query: 600 cgattagctgtagctgcgaactttatgtacgcgtgggtttcagtttgctttgcacatgcc 659
||||||||||||||||| || |||||||| |||||| |||||||||| | ||| |||| |
Sbjct: 130 cgattagctgtagctgcaaattttatgtatgcgtggttttcagtttgttgtgcccatg-c 72
Query: 660 ctttatggctttatcgttcaaactcaactacga 692
|||||| |||||||| || ||||||||||||||
Sbjct: 71 ctttattgctttatctttaaaactcaactacga 39
>gb|CD427426.1|CD427426 SA1_30_H03.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_30_H03_A002 5', mRNA sequence
Length = 810
Score = 920 bits (464), Expect = 0.0
Identities = 586/628 (93%), Gaps = 8/628 (1%)
Strand = Plus / Plus
Query: 1 gggaagcagaggccctcaacgcaaaggctngacattatcaaaagccagaagatgttccat 60
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 189 gggaagcagaggccctcaacgcgaaggctggacattatcaaaagccagaagatgttccat 248
Query: 61 tcttccctcaagatctaccctcacctctctttcctacaaagccttccccaaaggtcttgc 120
|||||||||||||||| ||||| |||||||||||||| |||||||||||||||| ||||
Sbjct: 249 tcttccctcaagatcttccctcgcctctctttcctaccaagccttccccaaaggctttgc 308
Query: 121 acccttttgcttcattggtcaccgtgaatgatgcaatatggaaaatgtattttgatgaat 180
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 309 acccttttgctttgttggtcactgtgaatgatgcaatatggaaaatgtattttgatgaat 368
Query: 181 tgctcccgttattcactgttgatggtgatgatggcagctatgcacaaacagttgcactgg 240
||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 369 tgctcccattattcactgttgatggtgatgatggtaactatgcacaaacagttgcactgg 428
Query: 241 atttagcgtgtctgcaggttctatcacaaagaattcatattggtaaatatgttgctgagg 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 attttgcgtgtctgcaggttctatcacaaagaattcatattggtaaatatgttgctgagg 488
Query: 301 tgaagttcaaagacgctcctcaagaatatagtcgactaataaaagaaaaggacagcaatt 360
| ||||||||||| ||||||||||| ||||||||| ||||||||| ||||||||||||||
Sbjct: 489 tcaagttcaaagatgctcctcaagattatagtcgattaataaaagcaaaggacagcaatt 548
Query: 361 ctctgatggatatgctgacattcaaggctgtggaagagaaggtcaagaagagagtagaga 420
|| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 549 ctttgatggatctgctgacattcaaggctgtggaagagaaggttaagaagagagtagaga 608
Query: 421 agaaggctaggacgttcgggcagaacgtcaccttggatgacaatgccactgctggtgaca 480
||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 609 agaaggccaggaccttcgggcagaacgtcaccttggaggacaatgccactgccagtgaca 668
Query: 481 gcgagtgcaaggtcgatcccaaagtgctctccaagctgtatgatcagtgggtgatgccac 540
|||| ||||||||| |||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 669 gcgaatgcaaggtcaatcctaaagtgctctccaagctgtatgatcagtgggtaatgccac 728
Query: 541 tgaccaaggatgtcgaagtcgagtatctcctgcgccgcctcgactgatcagtgatcaccc 600
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 729 tgaccaaggacgtcgaagtcgagtatctcctgcgccgcctcgactgatca--------cc 780
Query: 601 gattagctgtagctgcgaactttatgta 628
|||||||||||||||| || ||||||||
Sbjct: 781 gattagctgtagctgcaaattttatgta 808
>gb|CF071776.1|CF071776 FE1_18_E12.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_18_E12_A002 5', mRNA sequence
Length = 666
Score = 797 bits (402), Expect = 0.0
Identities = 546/594 (91%), Gaps = 10/594 (1%)
Strand = Plus / Minus
Query: 99 aagccttccccaaaggtcttgcacccttttgcttcattggtcaccgtgaatgatgcaata 158
|||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||
Sbjct: 665 aagccttccccaaaggctttgcacccttttgctttgttggtcactgtgaatgatgcaata 606
Query: 159 tggaaaatgtattttgatgaattgctcccgttattcactgttgatggtgatgatggcagc 218
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
Sbjct: 605 tggaaaatgtattttgatgaattgctcccattattcactgttgatggtgatgatggtaac 546
Query: 219 tatgcacaaacagttgcactggatttagcgtgtctgcaggttctatcacaaagaattcat 278
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 545 tatgcacaaacagttgcactggattttgcgtgtctgcaggttctatcacaaagaattcat 486
Query: 279 attggtaaatatgttgctgaggtgaagttcaaagacgctcctcaagaatatagtcgacta 338
||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| ||
Sbjct: 485 attggtaaatatgttgctgaggtcaagttcaaagatgctcctcaagattatagtcgatta 426
Query: 339 ataaaagaaaaggacagcaattctctgatggatatgctgacattcaaggctgtggaagag 398
||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 425 ataaaagcaaaggacagcaattctttgatggatctgctgacattcaaggctgtggaagag 366
Query: 399 aaggtcaagaagagagtagagaagaaggctaggacgttcgggcagaacgtcaccttggat 458
||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 365 aaggttaagaagagagtagagaagaaggccaggaccttcgggcagaacgtcaccttggag 306
Query: 459 gacaatgccactgctggtgacagcgagtgcaaggtcgatcccaaagtgctctccaagctg 518
|||||||||||||| |||||||||| ||||||||| |||| ||||||||||||||||||
Sbjct: 305 gacaatgccactgccagtgacagcgaatgcaaggtcaatcctaaagtgctctccaagctg 246
Query: 519 tatgatcagtgggtgatgccactgaccaaggatgtcgaagtcgagtatctcctgcgccgc 578
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 245 tatgatcagtgggtaatgccactgaccaaggacgtcgaagtcgagtatctcctgcgccgc 186
Query: 579 ctcgactgatcagtgatcacccgattagctgtagctgcgaactttatgtacgcgtgggtt 638
|||||||||||| |||||||||||| ||||| || |||||||| |||||| ||
Sbjct: 185 ctcgactgatca--------ccgattagctgtggctgcaaattttatgtatgcgtggttt 134
Query: 639 tcagtttgctttgcacatgccctttatggctttatcgttcaaactcaactacga 692
|||||||| | ||| |||||| |||| |||||||| || ||||||||||||||
Sbjct: 133 tcagtttgttgtgcccatgcc--ttattgctttatctttaaaactcaactacga 82
>gb|CF480460.1|CF480460 POL1_65_H09.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_65_H09_A002 5', mRNA sequence
Length = 761
Score = 791 bits (399), Expect = 0.0
Identities = 494/526 (93%)
Strand = Plus / Plus
Query: 1 gggaagcagaggccctcaacgcaaaggctngacattatcaaaagccagaagatgttccat 60
|||||||| ||||||||||| | |||||| ||||||||||||||||||||||||||||||
Sbjct: 236 gggaagcacaggccctcaactcgaaggctggacattatcaaaagccagaagatgttccat 295
Query: 61 tcttccctcaagatctaccctcacctctctttcctacaaagccttccccaaaggtcttgc 120
|||||||||||||||| ||||| |||||||||||||| |||||||||||||||| ||||
Sbjct: 296 tcttccctcaagatcttccctcgcctctctttcctaccaagccttccccaaaggctttgc 355
Query: 121 acccttttgcttcattggtcaccgtgaatgatgcaatatggaaaatgtattttgatgaat 180
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 356 acccttttgctttgttggtcactgtgaatgatgcaatatggaaaatgtattttgatgaat 415
Query: 181 tgctcccgttattcactgttgatggtgatgatggcagctatgcacaaacagttgcactgg 240
||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 416 tgctcccattattcactgttgatggtgatgatggtaactatgcacaaacagttgcactgg 475
Query: 241 atttagcgtgtctgcaggttctatcacaaagaattcatattggtaaatatgttgctgagg 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 attttgcgtgtctgcaggttctatcacaaagaattcatattggtaaatatgttgctgagg 535
Query: 301 tgaagttcaaagacgctcctcaagaatatagtcgactaataaaagaaaaggacagcaatt 360
| ||||||||||| ||||||||||| ||||||||| ||||||||| ||||||||||||||
Sbjct: 536 tcaagttcaaagatgctcctcaagattatagtcgattaataaaagcaaaggacagcaatt 595
Query: 361 ctctgatggatatgctgacattcaaggctgtggaagagaaggtcaagaagagagtagaga 420
|| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 596 ctttgatggatctgctgacattcaaggctgtggaagagaaggttaagaagagagtagaga 655
Query: 421 agaaggctaggacgttcgggcagaacgtcaccttggatgacaatgccactgctggtgaca 480
||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 656 agaaggccaggaccttcgggcagaacgtcaccttggaggacaatgccactgccagtgaca 715
Query: 481 gcgagtgcaaggtcgatcccaaagtgctctccaagctgtatgatca 526
|||| ||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 716 gcgaatgcaaggtcaatcctaaagtgctctccaagctgtatgatca 761
>gb|CF480373.1|CF480373 POL1_65_H09.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_65_H09_A002 3', mRNA sequence
Length = 682
Score = 783 bits (395), Expect = 0.0
Identities = 579/641 (90%), Gaps = 17/641 (2%)
Strand = Plus / Plus
Query: 123 ccttttgcttcattggtcaccgtgaatgatgcaatatggaaaatgtattttgatgaattg 182
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccttttgctttgttggtcactgtgaatgatgcaatatggaaaatgtattttgatgaattg 60
Query: 183 ctcccgttattcactgttgatggtgatgatggcagctatgcacaaacagttgcactggat 242
||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 61 ctcccattattcactgttgatggtgatgatggtaactatgcacaaacagttgcactggat 120
Query: 243 ttagcgtgtctgcaggttctatcacaaagaattcatattggtaaatatgttgctgaggtg 302
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttgcgtgtctgcaggttctatcacaaagaattcatattggtaaatatgttgctgaggtc 180
Query: 303 aagttcaaagacgctcctcaagaatatagtcgactaataaaagaaaaggacagcaattct 362
||||||||||| ||||||||||| ||||||||| ||||||||| ||||||||||||||||
Sbjct: 181 aagttcaaagatgctcctcaagattatagtcgattaataaaagcaaaggacagcaattct 240
Query: 363 ctgatggatatgctgacattcaaggctgtggaagagaaggtcaagaagagagtagagaag 422
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 241 ttgatggatctgctgacattcaaggctgtggaagagaaggttaagaagagagtagagaag 300
Query: 423 aaggctaggacgttcgggcagaacgtcaccttggatgacaatgccactgctggtgacagc 482
||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 301 aaggccaggaccttcgggcagaacgtcaccttggaggacaatgccactgccagtgacagc 360
Query: 483 gagtgcaaggtcgatcccaaagtgctctccaagctgtatgatcagtgggtgatgccactg 542
|| ||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 361 gaatgcaaggtcaatcctaaagtgctctccaagctgtatgatcagtgggtaatgccactg 420
Query: 543 accaaggatgtcgaagtcgagtatctcctgcgccgcctcgactgatcagtgatcacccga 602
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 421 accaaggacgtcgaagtcgagtatctcctgcgccgcctcgactgatca--------ccga 472
Query: 603 ttagctgtagctgcgaactttatgtacgcgtgggtttcagtttgctttgcacatgccctt 662
|||||||||||||| || |||||||| |||||| |||||||||| | ||| |||| ||||
Sbjct: 473 ttagctgtagctgcaaattttatgtatgcgtggttttcagtttgttgtgcccatg-cctt 531
Query: 663 tatggctttatcgttcaaactcaacta--------cgagagaacgttaccaggatctggc 714
||| |||||||| || ||||||||||| |||||||| ||||||||||||||
Sbjct: 532 tattgctttatctttaaaactcaactacgactcttcgagagaatattaccaggatctgga 591
Query: 715 cttcgtctttgtcagcctgcttgcccgtcatctgcatgagt 755
|||||||| | ||| ||||| || || |||||| |||||||
Sbjct: 592 cttcgtctgtctcatcctgcctgaccatcatcttcatgagt 632
>gb|CD427401.1|CD427401 SA1_30_H03.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_30_H03_A002 3', mRNA sequence
Length = 716
Score = 759 bits (383), Expect = 0.0
Identities = 558/617 (90%), Gaps = 17/617 (2%)
Strand = Plus / Plus
Query: 147 aatgatgcaatatggaaaatgtattttgatgaattgctcccgttattcactgttgatggt 206
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 aatgatgcaatatggaaaatgtattttgatgaattgctcccattattcactgttgatggt 60
Query: 207 gatgatggcagctatgcacaaacagttgcactggatttagcgtgtctgcaggttctatca 266
|||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 61 gatgatggtaactatgcacaaacagttgcactggattttgcgtgtctgcaggttctatca 120
Query: 267 caaagaattcatattggtaaatatgttgctgaggtgaagttcaaagacgctcctcaagaa 326
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 121 caaagaattcatattggtaaatatgttgctgaggtcaagttcaaagatgctcctcaagat 180
Query: 327 tatagtcgactaataaaagaaaaggacagcaattctctgatggatatgctgacattcaag 386
||||||||| ||||||||| |||||||||||||||| |||||||| ||||||||||||||
Sbjct: 181 tatagtcgattaataaaagcaaaggacagcaattctttgatggatctgctgacattcaag 240
Query: 387 gctgtggaagagaaggtcaagaagagagtagagaagaaggctaggacgttcgggcagaac 446
||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 241 gctgtggaagagaaggttaagaagagagtagagaagaaggccaggaccttcgggcagaac 300
Query: 447 gtcaccttggatgacaatgccactgctggtgacagcgagtgcaaggtcgatcccaaagtg 506
||||||||||| |||||||||||||| |||||||||| ||||||||| |||| ||||||
Sbjct: 301 gtcaccttggaggacaatgccactgccagtgacagcgaatgcaaggtcaatcctaaagtg 360
Query: 507 ctctccaagctgtatgatcagtgggtgatgccactgaccaaggatgtcgaagtcgagtat 566
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 361 ctctccaagctgtatgatcagtgggtaatgccactgaccaaggacgtcgaagtcgagtat 420
Query: 567 ctcctgcgccgcctcgactgatcagtgatcacccgattagctgtagctgcgaactttatg 626
|||||||||||||||||||||||| |||||||||||||||||| || ||||||
Sbjct: 421 ctcctgcgccgcctcgactgatca--------ccgattagctgtagctgcaaattttatg 472
Query: 627 tacgcgtgggtttcagtttgctttgcacatgccctttatggctttatcgttcaaactcaa 686
|| |||||| |||||||||| | ||| |||| ||||||| |||||||| || ||||||||
Sbjct: 473 tatgcgtggttttcagtttgttgtgcccatg-cctttattgctttatctttaaaactcaa 531
Query: 687 cta--------cgagagaacgttaccaggatctggccttcgtctttgtcagcctgcttgc 738
||| |||||||| |||||||||||||| |||||||| | ||| ||||| ||
Sbjct: 532 ctacgactcttcgagagaatattaccaggatctggacttcgtctgtctcatcctgcctga 591
Query: 739 ccgtcatctgcatgagt 755
|| |||||| |||||||
Sbjct: 592 ccatcatcttcatgagt 608
>gb|CF481134.1|CF481134 POL1_70_E04.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_70_E04_A002 3', mRNA sequence
Length = 584
Score = 745 bits (376), Expect = 0.0
Identities = 506/549 (92%), Gaps = 9/549 (1%)
Strand = Plus / Plus
Query: 144 gtgaatgatgcaatatggaaaatgtattttgatgaattgctcccgttattcactgttgat 203
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 2 gtgaatgatgcaatatggaaaatgtattttgatgaattgcccccattattcactgttgat 61
Query: 204 ggtgatgatggcagctatgcacaaacagttgcactggatttagcgtgtctgcaggttcta 263
||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 62 ggtgatgatggtaactatgcacaaacagttgcactggattttgcgtgtctgcaggttcca 121
Query: 264 tcacaaagaattcatattggtaaatatgttgctgaggtgaagttcaaagacgctcctcaa 323
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 122 tcacaaagaattcatattggtaaatatgttgctgaggtcaagttcaaagatgctcctcaa 181
Query: 324 gaatatagtcgactaataaaagaaaaggacagcaattctctgatggatatgctgacattc 383
|| ||||||||| ||||||||| |||||||||||||||| |||||||| |||||||||||
Sbjct: 182 gattatagtcgattaataaaagcaaaggacagcaattctttgatggatctgctgacattc 241
Query: 384 aaggctgtggaagagaaggtcaagaagagagtagagaagaaggctaggacgttcgggcag 443
|||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct: 242 aaggctgtggaagagaaggttaagaagagagtagagaagaaggccaggaccttcgggcag 301
Query: 444 aacgtcaccttggatgacaatgccactgctggtgacagcgagtgcaaggtcgatcccaaa 503
|||||||||||||| |||||||||||||| |||||||||| ||||||||| |||| |||
Sbjct: 302 aacgtcaccttggaggacaatgccactgccagtgacagcgaatgcaaggtcaatcctaaa 361
Query: 504 gtgctctccaagctgtatgatcagtgggtgatgccactgaccaaggatgtcgaagtcgag 563
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 362 gtgctctccaagctgtatgatcagtgggtaatgccactgaccaaggacgtcgaagtcgag 421
Query: 564 tatctcctgcgccgcctcgactgatcagtgatcacccgattagctgtagctgcgaacttt 623
||||||||||||||||||||||||||| |||||||||||||||||| || |||
Sbjct: 422 tatctcctgcgccgcctcgactgatca--------ccgattagctgtagctgcaaatttt 473
Query: 624 atgtacgcgtgggtttcagtttgctttgcacatgccctttatggctttatcgttcaaact 683
||||| |||||| |||||||||| | ||| |||| ||||||| |||||||| || |||||
Sbjct: 474 atgtatgcgtggttttcagtttgttgtgcccatg-cctttattgctttatctttgaaact 532
Query: 684 caactacga 692
|||||||||
Sbjct: 533 caactacga 541
>gb|CF481222.1|CF481222 POL1_70_E04.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_70_E04_A002 5', mRNA sequence
Length = 683
Score = 739 bits (373), Expect = 0.0
Identities = 456/484 (94%)
Strand = Plus / Plus
Query: 1 gggaagcagaggccctcaacgcaaaggctngacattatcaaaagccagaagatgttccat 60
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 197 gggaagcagaggccctcaacgcgaaggctggacattatcaaaagccagaagatgttccat 256
Query: 61 tcttccctcaagatctaccctcacctctctttcctacaaagccttccccaaaggtcttgc 120
|||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct: 257 tcttccctcaagatcttccctcgcctctctttcctaccaagccttccccaaaggttttgc 316
Query: 121 acccttttgcttcattggtcaccgtgaatgatgcaatatggaaaatgtattttgatgaat 180
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 317 acccttttgctttgttggtcactgtgaatgatgcaatatggaaaatgtattttgatgaat 376
Query: 181 tgctcccgttattcactgttgatggtgatgatggcagctatgcacaaacagttgcactgg 240
||| ||| |||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 377 tgcccccattattcactgttgatggtgatgatggtaactatgcacaaacagttgcactgg 436
Query: 241 atttagcgtgtctgcaggttctatcacaaagaattcatattggtaaatatgttgctgagg 300
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 437 attttgcgtgtctgcaggttccatcacaaagaattcatattggtaaatatgttgctgagg 496
Query: 301 tgaagttcaaagacgctcctcaagaatatagtcgactaataaaagaaaaggacagcaatt 360
| ||||||||||| ||||||||||| ||||||||| ||||||||| ||||||||||||||
Sbjct: 497 tcaagttcaaagatgctcctcaagattatagtcgattaataaaagcaaaggacagcaatt 556
Query: 361 ctctgatggatatgctgacattcaaggctgtggaagagaaggtcaagaagagagtagaga 420
|| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 557 ctttgatggatctgctgacattcaaggctgtggaagagaaggttaagaagagagtagaga 616
Query: 421 agaaggctaggacgttcgggcagaacgtcaccttggatgacaatgccactgctggtgaca 480
||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 617 agaaggccaggaccttcgggcagaacgtcaccttggaggacaatgccactgccagtgaca 676
Query: 481 gcga 484
||||
Sbjct: 677 gcga 680
>gb|AI724645.1|AI724645 RHIZ1_11_B12.y2_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 471
Score = 698 bits (352), Expect = 0.0
Identities = 418/440 (95%)
Strand = Plus / Plus
Query: 148 atgatgcaatatggaaaatgtattttgatgaattgctcccgttattcactgttgatggtg 207
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 8 atgatgcaatatggaaaatgtattttgatgaattgctcccattattcactgttgatggtg 67
Query: 208 atgatggcagctatgcacaaacagttgcactggatttagcgtgtctgcaggttctatcac 267
||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 68 atgatggtaactatgcacaaacagttgcactggattttgcgtgtctgcaggttctatcac 127
Query: 268 aaagaattcatattggtaaatatgttgctgaggtgaagttcaaagacgctcctcaagaat 327
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
Sbjct: 128 aaagaattcatattggtaaatatgttgctgaggtcaagttcaaagatgctcctcaagatt 187
Query: 328 atagtcgactaataaaagaaaaggacagcaattctctgatggatatgctgacattcaagg 387
|||||||| ||||||||| |||||||||||||||| |||||||| |||||||||||||||
Sbjct: 188 atagtcgattaataaaagcaaaggacagcaattctttgatggatctgctgacattcaagg 247
Query: 388 ctgtggaagagaaggtcaagaagagagtagagaagaaggctaggacgttcgggcagaacg 447
|||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 248 ctgtggaagagaaggttaagaagagagtagagaagaaggccaggaccttcgggcagaacg 307
Query: 448 tcaccttggatgacaatgccactgctggtgacagcgagtgcaaggtcgatcccaaagtgc 507
|||||||||| |||||||||||||| |||||||||| ||||||||| |||| |||||||
Sbjct: 308 tcaccttggaggacaatgccactgccagtgacagcgaatgcaaggtcaatcctaaagtgc 367
Query: 508 tctccaagctgtatgatcagtgggtgatgccactgaccaaggatgtcgaagtcgagtatc 567
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 368 tctccaagctgtatgatcagtgggtaatgccactgaccaaggacgtcgaagtcgagtatc 427
Query: 568 tcctgcgccgcctcgactga 587
||||||||||||||||||||
Sbjct: 428 tcctgcgccgcctcgactga 447
>gb|AW922618.1|AW922618 DG1_46_C02.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 588
Score = 593 bits (299), Expect = e-167
Identities = 361/382 (94%)
Strand = Plus / Plus
Query: 1 gggaagcagaggccctcaacgcaaaggctngacattatcaaaagccagaagatgttccat 60
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 207 gggaagcagaggccctcaacgcgaaggctggacattatcaaaagccagaagatgttccat 266
Query: 61 tcttccctcaagatctaccctcacctctctttcctacaaagccttccccaaaggtcttgc 120
|||||||||||||||| ||||| |||||||||||||| |||||||||||||||| ||||
Sbjct: 267 tcttccctcaagatcttccctcgcctctctttcctaccaagccttccccaaaggctttgc 326
Query: 121 acccttttgcttcattggtcaccgtgaatgatgcaatatggaaaatgtattttgatgaat 180
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 327 acccttttgctttgttggtcactgtgaatgatgcaatatggaaaatgtattttgatgaat 386
Query: 181 tgctcccgttattcactgttgatggtgatgatggcagctatgcacaaacagttgcactgg 240
||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 387 tgctcccattattcactgttgatggtgatgatggtaactatgcacaaacagttgcactgg 446
Query: 241 atttagcgtgtctgcaggttctatcacaaagaattcatattggtaaatatgttgctgagg 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 attttgcgtgtctgcaggttctatcacaaagaattcatattggtaaatatgttgctgagg 506
Query: 301 tgaagttcaaagacgctcctcaagaatatagtcgactaataaaagaaaaggacagcaatt 360
| ||||||||||| ||||||||||| ||||||||| ||||||||| ||||||||||||||
Sbjct: 507 tcaagttcaaagatgctcctcaagattatagtcgattaataaaagcaaaggacagcaatt 566
Query: 361 ctctgatggatatgctgacatt 382
|| |||||||| ||||||||||
Sbjct: 567 ctttgatggatctgctgacatt 588
>gb|CW334587.1|CW334587 104_833_11482580_116_36073_078 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11482580, DNA
sequence
Length = 732
Score = 430 bits (217), Expect = e-119
Identities = 365/415 (87%), Gaps = 17/415 (4%)
Strand = Plus / Plus
Query: 349 aggacagcaattctctgatggatatgctgacattcaaggctgtggaagagaaggtcaaga 408
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 27 aggacagcaattctttgatggatctgctgacattcaaggctgtggaagagaaggttaaga 86
Query: 409 agagagtagagaagaaggctaggacgttcgggcagaacgtcaccttggatgacaatgcca 468
||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 87 agagagtagagaagaaggccaggaccttcgggcagaacgtcaccttggaggacaatgcca 146
Query: 469 ctgctggtgacagcgagtgcaaggtcgatcccaaagtgctctccaagctgtatgatcagt 528
|||| |||||||||| ||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 147 ctgccagtgacagcgaatgcaaggtcaatcctaaagtgctctccaagctgtatgatcagt 206
Query: 529 gggtgatgccactgaccaaggatgtcgaagtcgagtatctcctgcgccgcctcgactgat 588
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 207 gggtaatgccactgaccaaggacgtcgaagtcgagtatctcctgcgccgcctcgactgat 266
Query: 589 cagtgatcacccgattagctgtagctgcgaactttatgtacgcgtgggtttcagtttgct 648
|| |||||||||||||||||| || |||||||| |||||| |||||||||| |
Sbjct: 267 ca--------ccgattagctgtagctgcaaattttatgtatgcgtggttttcagtttgtt 318
Query: 649 ttgcacatgccctttatggctttatcgttcaaactcaacta--------cgagagaacgt 700
||| |||| ||||||| |||||||| || ||||||||||| |||||||| |
Sbjct: 319 gtgcccatg-cctttattgctttatctttaaaactcaactacgactcttcgagagaatat 377
Query: 701 taccaggatctggccttcgtctttgtcagcctgcttgcccgtcatctgcatgagt 755
||||||||||||| |||||||| | ||| ||||| || || |||||| |||||||
Sbjct: 378 taccaggatctggacttcgtctgtctcatcctgcctgaccatcatcttcatgagt 432
>gb|CL189662.1|CL189662 104_407_10905528_116_32480_094 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10905528, DNA
sequence
Length = 654
Score = 228 bits (115), Expect = 6e-058
Identities = 136/143 (95%)
Strand = Plus / Plus
Query: 117 ttgcacccttttgcttcattggtcaccgtgaatgatgcaatatggaaaatgtattttgat 176
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 54 ttgcacccttttgctttgttggtcactgtgaatgatgcaatatggaaaatgtattttgat 113
Query: 177 gaattgctcccgttattcactgttgatggtgatgatggcagctatgcacaaacagttgca 236
||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 114 gaattgctcccattattcactgttgatggtgatgatggtaactatgcacaaacagttgca 173
Query: 237 ctggatttagcgtgtctgcaggt 259
|||||||| ||||||||||||||
Sbjct: 174 ctggattttgcgtgtctgcaggt 196
Score = 151 bits (76), Expect = 1e-034
Identities = 91/96 (94%)
Strand = Plus / Plus
Query: 256 aggttctatcacaaagaattcatattggtaaatatgttgctgaggtgaagttcaaagacg 315
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 303 aggttctatcacaaagaattcatattggtaaatatgttgctgaggtcaagttcaaagatg 362
Query: 316 ctcctcaagaatatagtcgactaataaaagaaaagg 351
|||||||||| ||||||||| ||||||||| |||||
Sbjct: 363 ctcctcaagattatagtcgattaataaaagcaaagg 398
>gb|CW474600.1|CW474600 fsbb001f230i18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f230i18, DNA
sequence
Length = 775
Score = 188 bits (95), Expect = 6e-046
Identities = 210/249 (84%), Gaps = 17/249 (6%)
Strand = Plus / Plus
Query: 515 gctgtatgatcagtgggtgatgccactgaccaaggatgtcgaagtcgagtatctcctgcg 574
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 gctgtatgatcagtgggtaatgccactgaccaaggacgtcgaagtcgagtatctcctgcg 60
Query: 575 ccgcctcgactgatcagtgatcacccgattagctgtagctgcgaactttatgtacgcgtg 634
|||||||||||||||| |||||||||||||||||| || |||||||| |||||
Sbjct: 61 ccgcctcgactgatca--------ccgattagctgtagctgcaaattttatgtatgcgtg 112
Query: 635 ggtttcagtttgctttgcacatgccctttatggctttatcgttcaaactcaacta----- 689
| |||||||||| | ||| |||| ||||||| |||||||| || |||||||||||
Sbjct: 113 gttttcagtttgttgtgcccatg-cctttattgctttatctttaaaactcaactacgact 171
Query: 690 ---cgagagaacgttaccaggatctggccttcgtctttgtcagcctgcttgcccgtcatc 746
|||||||| |||||||||||||| |||||||| | ||| ||||| || || |||||
Sbjct: 172 cttcgagagaatattaccaggatctggacttcgtctgtctcatcctgcctgaccatcatc 231
Query: 747 tgcatgagt 755
| |||||||
Sbjct: 232 ttcatgagt 240
>gb|CW464469.1|CW464469 fsbb001f213l17f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f213l17, DNA
sequence
Length = 674
Score = 151 bits (76), Expect = 1e-034
Identities = 91/96 (94%)
Strand = Plus / Minus
Query: 256 aggttctatcacaaagaattcatattggtaaatatgttgctgaggtgaagttcaaagacg 315
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 504 aggttctatcacaaagaattcatattggtaaatatgttgctgaggtcaagttcaaagatg 445
Query: 316 ctcctcaagaatatagtcgactaataaaagaaaagg 351
|||||||||| ||||||||| ||||||||| |||||
Sbjct: 444 ctcctcaagattatagtcgattaataaaagcaaagg 409
Score = 99.6 bits (50), Expect = 4e-019
Identities = 59/62 (95%)
Strand = Plus / Minus
Query: 197 tgttgatggtgatgatggcagctatgcacaaacagttgcactggatttagcgtgtctgca 256
|||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||
Sbjct: 674 tgttgatggtgatgatggtacctatgcacaaacagttgcactggattttgcgtgtctgca 615
Query: 257 gg 258
||
Sbjct: 614 gg 613
>gb|CL189661.1|CL189661 104_407_10905528_114_32476_094 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10905528, DNA
sequence
Length = 636
Score = 129 bits (65), Expect = 4e-028
Identities = 74/77 (96%)
Strand = Plus / Minus
Query: 349 aggacagcaattctctgatggatatgctgacattcaaggctgtggaagagaaggtcaaga 408
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 77 aggacagcaattctttgatggatctgctgacattcaaggctgtggaagagaaggttaaga 18
Query: 409 agagagtagagaagaag 425
|||||||||||||||||
Sbjct: 17 agagagtagagaagaag 1
>gb|CW334588.1|CW334588 104_833_11482580_148_36072_078 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11482580, DNA
sequence
Length = 741
Score = 89.7 bits (45), Expect = 4e-016
Identities = 133/162 (82%), Gaps = 9/162 (5%)
Strand = Plus / Minus
Query: 602 attagctgtagctgcgaactttatgtacgcgtgggtttcagtttgctttgcacatgccct 661
||||||||||||||| || |||||||| |||||| |||||||||| | ||| |||| |||
Sbjct: 741 attagctgtagctgcaaattttatgtatgcgtggttttcagtttgttgtgcccatg-cct 683
Query: 662 ttatggctttatcgttcaaactcaacta--------cgagagaacgttaccaggatctgg 713
|||| |||||||| || ||||||||||| |||||||| ||||||||||||||
Sbjct: 682 ttattgctttatctttaaaactcaactacgactcttcgagagaatattaccaggatctgg 623
Query: 714 ccttcgtctttgtcagcctgcttgcccgtcatctgcatgagt 755
|||||||| | ||| ||||| || || |||||| |||||||
Sbjct: 622 acttcgtctgtctcatcctgcctgaccatcatcttcatgagt 581
>gb|CW140838.1|CW140838 104_531_11135993_148_34922_071 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11135993, DNA
sequence
Length = 632
Score = 40.1 bits (20), Expect = 0.32
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 406 agaagagagtagagaagaag 425
||||||||||||||||||||
Sbjct: 72 agaagagagtagagaagaag 53
>gb|CW430712.1|CW430712 fsbb001f144i18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f144i18, DNA
sequence
Length = 750
Score = 40.1 bits (20), Expect = 0.32
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 406 agaagagagtagagaagaag 425
||||||||||||||||||||
Sbjct: 727 agaagagagtagagaagaag 746
>gb|CN152138.1|CN152138 WOUND1_80_C01.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_80_C01_A002 3', mRNA sequence
Length = 694
Score = 40.1 bits (20), Expect = 0.32
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 516 ctgtatgatcagtgggtgat 535
||||||||||||||||||||
Sbjct: 520 ctgtatgatcagtgggtgat 539
>gb|CX609893.1|CX609893 ANR1_15_H06.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_15_H06_A002 3', mRNA sequence
Length = 719
Score = 40.1 bits (20), Expect = 0.32
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 516 ctgtatgatcagtgggtgat 535
||||||||||||||||||||
Sbjct: 550 ctgtatgatcagtgggtgat 569
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 220,700
Number of Sequences: 832831
Number of extensions: 220700
Number of successful extensions: 63305
Number of sequences better than 0.5: 20
Number of HSP's better than 0.5 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63251
Number of HSP's gapped (non-prelim): 45
length of query: 834
length of database: 491,359,669
effective HSP length: 20
effective length of query: 814
effective length of database: 474,703,049
effective search space: 386408281886
effective search space used: 386408281886
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)