BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3024030.2.1
(412 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW181998.1|CW181998 104_597_11163822_148_36661_027 Sorgh... 301 3e-080
gb|CW069232.1|CW069232 104_319_10525781_5_30099 Sorghum met... 50 2e-004
gb|CW115976.1|CW115976 104_491_11106855_148_34596_058 Sorgh... 50 2e-004
gb|CW131218.1|CW131218 104_514_11115553_116_34784_013 Sorgh... 50 2e-004
gb|CW468720.1|CW468720 fsbb001f221b03f0 Sorghum methylation... 50 2e-004
gb|CD213512.1|CD213512 HS1_41_G06.b1_A012 Heat-shocked seed... 50 2e-004
gb|BZ331087.1|BZ331087 hw06b08.g1 WGS-SbicolorF (JM107 adap... 48 6e-004
gb|CW087659.1|CW087659 104_432_10947759_114_32550_058 Sorgh... 48 6e-004
gb|CW114346.1|CW114346 104_489_11105943_148_34567_064 Sorgh... 48 6e-004
gb|CW120722.1|CW120722 104_498_11109494_148_34656_059 Sorgh... 48 6e-004
gb|CW123471.1|CW123471 104_502_11111231_116_34689_084 Sorgh... 48 6e-004
gb|CW237957.1|CW237957 104_694_11216460_116_37394_038 Sorgh... 48 6e-004
gb|CW256197.1|CW256197 104_721_11226657_116_35140_045 Sorgh... 48 6e-004
gb|CW260920.1|CW260920 104_727_11229227_148_35199_034 Sorgh... 48 6e-004
gb|CW272450.1|CW272450 104_744_11403426_116_36224_067 Sorgh... 48 6e-004
gb|CW273371.1|CW273371 104_745_11403858_116_35718_065 Sorgh... 48 6e-004
gb|CW366243.1|CW366243 fsbb001f039c13f0 Sorghum methylation... 48 6e-004
gb|CW411330.1|CW411330 fsbb001f106h09k0 Sorghum methylation... 48 6e-004
gb|CW444521.1|CW444521 fsbb001f166c22f0 Sorghum methylation... 48 6e-004
gb|CW455141.1|CW455141 fsbb001f199o08f0 Sorghum methylation... 48 6e-004
gb|CW473668.1|CW473668 fsbb001f229c13k0 Sorghum methylation... 48 6e-004
gb|CW496053.1|CW496053 fsbb001f288b10k0 Sorghum methylation... 48 6e-004
gb|CW496461.1|CW496461 fsbb001f288l16k0 Sorghum methylation... 48 6e-004
gb|CL152818.1|CL152818 104_336_10780258_114_31365_274 Sorgh... 46 0.003
gb|CL182058.1|CL182058 104_393_10897174_148_31921_166 Sorgh... 46 0.003
gb|CW188322.1|CW188322 104_608_11172968_116_36732_030 Sorgh... 46 0.003
gb|CW414195.1|CW414195 fsbb001f113l13k0 Sorghum methylation... 46 0.003
gb|CW120048.1|CW120048 104_497_11109105_116_34642_043 Sorgh... 44 0.010
gb|CW158518.1|CW158518 104_564_11148863_148_36400_092 Sorgh... 44 0.010
gb|CW216268.1|CW216268 104_649_11195026_148_37127_047 Sorgh... 44 0.010
gb|CW264162.1|CW264162 104_732_11231128_116_35305_052 Sorgh... 44 0.010
gb|CW359200.1|CW359200 fsbb001f026l14f0 Sorghum methylation... 44 0.010
gb|CW408708.1|CW408708 fsbb001f102l11f0 Sorghum methylation... 44 0.010
gb|CW408709.1|CW408709 fsbb001f102l11k0 Sorghum methylation... 44 0.010
gb|CW411903.1|CW411903 fsbb001f107e12f0 Sorghum methylation... 44 0.010
gb|CW480279.1|CW480279 fsbb001f239e06f0 Sorghum methylation... 44 0.010
gb|CW480280.1|CW480280 fsbb001f239e06k0 Sorghum methylation... 44 0.010
gb|CD430970.1|CD430970 ETH1_6_H06.b1_A002 Ethylene-treated ... 44 0.010
gb|CD431107.1|CD431107 ETH1_6_H06.g1_A002 Ethylene-treated ... 44 0.010
gb|BZ329384.1|BZ329384 hv85e08.b1 WGS-SbicolorF (JM107 adap... 42 0.039
gb|CW211841.1|CW211841 104_642_11190714_148_37016_067 Sorgh... 42 0.039
gb|CW237931.1|CW237931 104_694_11216443_148_37400_072 Sorgh... 42 0.039
gb|CW276660.1|CW276660 104_750_11405610_116_35397_073 Sorgh... 42 0.039
gb|CW378044.1|CW378044 fsbb001f056k06k0 Sorghum methylation... 42 0.039
gb|CW396958.1|CW396958 fsbb001f085k08f0 Sorghum methylation... 42 0.039
gb|CW500146.1|CW500146 fsbb001f295e22k0 Sorghum methylation... 42 0.039
gb|BF587891.1|BF587891 FM1_34_B11.g1_A003 Floral-Induced Me... 42 0.039
gb|BZ331674.1|BZ331674 hx22a08.b1 WGS-SbicolorF (JM107 adap... 40 0.15
gb|CL169140.1|CL169140 104_367_10812418_116_31787_274 Sorgh... 40 0.15
gb|CL169141.1|CL169141 104_367_10812418_148_31786_274 Sorgh... 40 0.15
gb|CL170538.1|CL170538 104_371_10813894_116_31791_214 Sorgh... 40 0.15
gb|CW157570.1|CW157570 104_561_11147594_148_36393_015 Sorgh... 40 0.15
gb|CW201345.1|CW201345 104_627_11184523_116_37109_078 Sorgh... 40 0.15
gb|CW296340.1|CW296340 104_778_11461452_116_35629_046 Sorgh... 40 0.15
gb|CW326320.1|CW326320 104_821_11478156_116_36065_038 Sorgh... 40 0.15
gb|CW326414.1|CW326414 104_821_11478204_116_36065_036 Sorgh... 40 0.15
gb|CW428676.1|CW428676 fsbb001f141i04f0 Sorghum methylation... 40 0.15
gb|CD226923.1|CD226923 CCC1_49_D01.b1_A007 Callus culture/c... 40 0.15
>gb|CW181998.1|CW181998 104_597_11163822_148_36661_027 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11163822, DNA
sequence
Length = 722
Score = 301 bits (152), Expect = 3e-080
Identities = 247/278 (88%), Gaps = 3/278 (1%)
Strand = Plus / Minus
Query: 92 aatcactttgcaccagtggcagcagaatgcacacttgaccaccatgacctccagtttcca 151
|||||||| |||||||| ||||||||| ||||||| |||||||||||||||||| |||
Sbjct: 358 aatcacttagcaccagt---agcagaatggacacttggccaccatgacctccagttgcca 302
Query: 152 agcctcctcgcgttcttcctcacgtctagacgaagcagcaagtagagaagaatccgatat 211
||| ||||||| | |||||| || ||||||||||||| ||||||||||| |||||| |||
Sbjct: 301 agcatcctcgcatgcttccttacatctagacgaagcaacaagtagagaacaatccggtat 242
Query: 212 ccgagcgccatcagtagcagaaccaggaggttcacccacttcgcgtttggggaagacgaa 271
|||| ||||||||||||| ||||||||||||||||||||| ||||||| |||||| |||
Sbjct: 241 ccgattgccatcagtagcaaaaccaggaggttcacccactttgcgtttgtggaagatgaa 182
Query: 272 atgtcgtacgagcctcgaacggcttggacaccaggtatggtcctgatctgtccaacagca 331
||||| || |||||||| |||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 181 atgtcatatgagcctcggacggcttggacaccaggtatagtccttatctgtccaacagca 122
Query: 332 aacgatgtgcccacgtactcgttctccaccaagccctg 369
|| |||||||| || |||||||| || |||||||||||
Sbjct: 121 aaggatgtgccaacatactcgttttcgaccaagccctg 84
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 40 aactcactaaacacctacgacactca 65
||||||||||||||||||||| ||||
Sbjct: 402 aactcactaaacacctacgacgctca 377
>gb|CW069232.1|CW069232 104_319_10525781_5_30099 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10525781, DNA
sequence
Length = 594
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 acaaaccaaaccaaaccaaaccaaa 38
|||||||||||||||||||||||||
Sbjct: 482 acaaaccaaaccaaaccaaaccaaa 506
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaac 34
||||||||||||||||||||
Sbjct: 488 caaaccaaaccaaaccaaac 507
>gb|CW115976.1|CW115976 104_491_11106855_148_34596_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11106855, DNA
sequence
Length = 571
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 14 acaaaccaaaccaaaccaaaccaaa 38
|||||||||||||||||||||||||
Sbjct: 466 acaaaccaaaccaaaccaaaccaaa 442
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaac 34
||||||||||||||||||||
Sbjct: 460 caaaccaaaccaaaccaaac 441
>gb|CW131218.1|CW131218 104_514_11115553_116_34784_013 Sorghum methylation filtered
library (LibID: 104) Sorghum bicolor genomic clone
11115553, DNA sequence
Length = 511
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 14 acaaaccaaaccaaaccaaaccaaa 38
|||||||||||||||||||||||||
Sbjct: 80 acaaaccaaaccaaaccaaaccaaa 56
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaac 34
||||||||||||||||||||
Sbjct: 74 caaaccaaaccaaaccaaac 55
>gb|CW468720.1|CW468720 fsbb001f221b03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f221b03, DNA
sequence
Length = 650
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaaccaaag 39
|||||||||||||||||||||||||
Sbjct: 198 caaaccaaaccaaaccaaaccaaag 174
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||||
Sbjct: 203 caaaccaaaccaaaccaaaccaaa 180
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 19 ccaaaccaaaccaaaccaaa 38
||||||||||||||||||||
Sbjct: 204 ccaaaccaaaccaaaccaaa 185
>gb|CD213512.1|CD213512 HS1_41_G06.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_41_G06_A012 3', mRNA sequence
Length = 524
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaaccaaag 39
|||||||||||||||||||||||||
Sbjct: 355 caaaccaaaccaaaccaaaccaaag 331
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 19 ccaaaccaaaccaaaccaaa 38
||||||||||||||||||||
Sbjct: 356 ccaaaccaaaccaaaccaaa 337
Score = 40.1 bits (20), Expect = 0.15
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||||||||| ||||
Sbjct: 350 caaaccaaaccaaaccaaagcaaa 327
>gb|BZ331087.1|BZ331087 hw06b08.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hw06b08 5', DNA sequence
Length = 361
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||||
Sbjct: 329 caaaccaaaccaaaccaaaccaaa 352
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||||
Sbjct: 324 caaaccaaaccaaaccaaaccaaa 347
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||||
Sbjct: 319 caaaccaaaccaaaccaaaccaaa 342
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 aaaccaaaccaaaccaaaccaaa 38
|||||||||||||||||||||||
Sbjct: 315 aaaccaaaccaaaccaaaccaaa 337
Score = 40.1 bits (20), Expect = 0.15
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||||||||| ||||
Sbjct: 334 caaaccaaaccaaaccaaaacaaa 357
>gb|CW087659.1|CW087659 104_432_10947759_114_32550_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10947759, DNA
sequence
Length = 731
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||||
Sbjct: 136 caaaccaaaccaaaccaaaccaaa 113
Score = 44.1 bits (22), Expect = 0.010
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 17 aaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||
Sbjct: 139 aaccaaaccaaaccaaaccaaa 118
Score = 40.1 bits (20), Expect = 0.15
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||||||||| ||||
Sbjct: 131 caaaccaaaccaaaccaaatcaaa 108
>gb|CW114346.1|CW114346 104_489_11105943_148_34567_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11105943, DNA
sequence
Length = 610
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||||
Sbjct: 505 caaaccaaaccaaaccaaaccaaa 528
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaac 34
||||||||||||||||||||
Sbjct: 510 caaaccaaaccaaaccaaac 529
>gb|CW120722.1|CW120722 104_498_11109494_148_34656_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11109494, DNA
sequence
Length = 663
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||||
Sbjct: 152 caaaccaaaccaaaccaaaccaaa 175
Score = 44.1 bits (22), Expect = 0.010
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 aaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||
Sbjct: 149 aaccaaaccaaaccaaaccaaa 170
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaac 34
||||||||||||||||||||
Sbjct: 157 caaaccaaaccaaaccaaac 176
>gb|CW123471.1|CW123471 104_502_11111231_116_34689_084 Sorghum methylation filtered
library (LibID: 104) Sorghum bicolor genomic clone
11111231, DNA sequence
Length = 605
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||||
Sbjct: 72 caaaccaaaccaaaccaaaccaaa 95
Score = 44.1 bits (22), Expect = 0.010
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 aaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||
Sbjct: 69 aaccaaaccaaaccaaaccaaa 90
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaac 34
||||||||||||||||||||
Sbjct: 77 caaaccaaaccaaaccaaac 96
>gb|CW237957.1|CW237957 104_694_11216460_116_37394_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11216460, DNA
sequence
Length = 655
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||||
Sbjct: 107 caaaccaaaccaaaccaaaccaaa 84
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||||
Sbjct: 102 caaaccaaaccaaaccaaaccaaa 79
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||||
Sbjct: 97 caaaccaaaccaaaccaaaccaaa 74
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 16 aaaccaaaccaaaccaaaccaaa 38
|||||||||||||||||||||||
Sbjct: 111 aaaccaaaccaaaccaaaccaaa 89
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaac 34
||||||||||||||||||||
Sbjct: 92 caaaccaaaccaaaccaaac 73
>gb|CW256197.1|CW256197 104_721_11226657_116_35140_045 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11226657, DNA
sequence
Length = 656
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 aaaccaaaccaaaccaaaccaaag 39
||||||||||||||||||||||||
Sbjct: 573 aaaccaaaccaaaccaaaccaaag 596
>gb|CW260920.1|CW260920 104_727_11229227_148_35199_034 Sorghum methylation filtered
library (LibID: 104) Sorghum bicolor genomic clone
11229227, DNA sequence
Length = 618
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||||
Sbjct: 5 caaaccaaaccaaaccaaaccaaa 28
Score = 44.1 bits (22), Expect = 0.010
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 aaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||
Sbjct: 2 aaccaaaccaaaccaaaccaaa 23
Score = 40.1 bits (20), Expect = 0.15
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||||||||| ||||
Sbjct: 10 caaaccaaaccaaaccaaatcaaa 33
>gb|CW272450.1|CW272450 104_744_11403426_116_36224_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11403426, DNA
sequence
Length = 664
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||||
Sbjct: 376 caaaccaaaccaaaccaaaccaaa 353
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 16 aaaccaaaccaaaccaaaccaaa 38
|||||||||||||||||||||||
Sbjct: 380 aaaccaaaccaaaccaaaccaaa 358
Score = 42.1 bits (21), Expect = 0.039
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaaccaaag 39
||||||||||||||||||| |||||
Sbjct: 371 caaaccaaaccaaaccaaatcaaag 347
>gb|CW273371.1|CW273371 104_745_11403858_116_35718_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11403858, DNA
sequence
Length = 495
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||||
Sbjct: 245 caaaccaaaccaaaccaaaccaaa 222
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaac 34
||||||||||||||||||||
Sbjct: 240 caaaccaaaccaaaccaaac 221
>gb|CW366243.1|CW366243 fsbb001f039c13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f039c13, DNA
sequence
Length = 646
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 aaaccaaaccaaaccaaaccaaag 39
||||||||||||||||||||||||
Sbjct: 249 aaaccaaaccaaaccaaaccaaag 272
>gb|CW411330.1|CW411330 fsbb001f106h09k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f106h09, DNA
sequence
Length = 814
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||||
Sbjct: 548 caaaccaaaccaaaccaaaccaaa 571
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||||
Sbjct: 543 caaaccaaaccaaaccaaaccaaa 566
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||||
Sbjct: 538 caaaccaaaccaaaccaaaccaaa 561
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 aaaccaaaccaaaccaaaccaaa 38
|||||||||||||||||||||||
Sbjct: 534 aaaccaaaccaaaccaaaccaaa 556
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaac 34
||||||||||||||||||||
Sbjct: 553 caaaccaaaccaaaccaaac 572
>gb|CW444521.1|CW444521 fsbb001f166c22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f166c22, DNA
sequence
Length = 514
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||||
Sbjct: 416 caaaccaaaccaaaccaaaccaaa 439
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||||
Sbjct: 411 caaaccaaaccaaaccaaaccaaa 434
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 aaaccaaaccaaaccaaaccaaa 38
|||||||||||||||||||||||
Sbjct: 407 aaaccaaaccaaaccaaaccaaa 429
>gb|CW455141.1|CW455141 fsbb001f199o08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f199o08, DNA
sequence
Length = 436
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||||
Sbjct: 106 caaaccaaaccaaaccaaaccaaa 129
Score = 44.1 bits (22), Expect = 0.010
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 aaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||
Sbjct: 103 aaccaaaccaaaccaaaccaaa 124
Score = 40.1 bits (20), Expect = 0.15
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||||||||| ||||
Sbjct: 111 caaaccaaaccaaaccaaatcaaa 134
>gb|CW473668.1|CW473668 fsbb001f229c13k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f229c13, DNA
sequence
Length = 559
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||||
Sbjct: 373 caaaccaaaccaaaccaaaccaaa 350
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaac 34
||||||||||||||||||||
Sbjct: 368 caaaccaaaccaaaccaaac 349
>gb|CW496053.1|CW496053 fsbb001f288b10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f288b10, DNA
sequence
Length = 697
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||||
Sbjct: 155 caaaccaaaccaaaccaaaccaaa 132
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaac 34
||||||||||||||||||||
Sbjct: 150 caaaccaaaccaaaccaaac 131
>gb|CW496461.1|CW496461 fsbb001f288l16k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f288l16, DNA
sequence
Length = 720
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||||
Sbjct: 160 caaaccaaaccaaaccaaaccaaa 137
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaac 34
||||||||||||||||||||
Sbjct: 155 caaaccaaaccaaaccaaac 136
>gb|CL152818.1|CL152818 104_336_10780258_114_31365_274 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10780258, DNA
sequence
Length = 415
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaaccaa 37
|||||||||||||||||||||||
Sbjct: 211 caaaccaaaccaaaccaaaccaa 189
Score = 42.1 bits (21), Expect = 0.039
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 18 accaaaccaaaccaaaccaaa 38
|||||||||||||||||||||
Sbjct: 213 accaaaccaaaccaaaccaaa 193
>gb|CL182058.1|CL182058 104_393_10897174_148_31921_166 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10897174, DNA
sequence
Length = 502
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaaccaa 37
|||||||||||||||||||||||
Sbjct: 286 caaaccaaaccaaaccaaaccaa 264
Score = 42.1 bits (21), Expect = 0.039
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 18 accaaaccaaaccaaaccaaa 38
|||||||||||||||||||||
Sbjct: 288 accaaaccaaaccaaaccaaa 268
>gb|CW188322.1|CW188322 104_608_11172968_116_36732_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11172968, DNA
sequence
Length = 636
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 acaaaccaaaccaaaccaaacca 36
|||||||||||||||||||||||
Sbjct: 104 acaaaccaaaccaaaccaaacca 126
>gb|CW414195.1|CW414195 fsbb001f113l13k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f113l13, DNA
sequence
Length = 250
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaaccaa 37
|||||||||||||||||||||||
Sbjct: 112 caaaccaaaccaaaccaaaccaa 134
Score = 42.1 bits (21), Expect = 0.039
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 18 accaaaccaaaccaaaccaaa 38
|||||||||||||||||||||
Sbjct: 110 accaaaccaaaccaaaccaaa 130
>gb|CW120048.1|CW120048 104_497_11109105_116_34642_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11109105, DNA
sequence
Length = 582
Score = 44.1 bits (22), Expect = 0.010
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 16 aaaccaaaccaaaccaaaccaa 37
||||||||||||||||||||||
Sbjct: 283 aaaccaaaccaaaccaaaccaa 262
>gb|CW158518.1|CW158518 104_564_11148863_148_36400_092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11148863, DNA
sequence
Length = 736
Score = 44.1 bits (22), Expect = 0.010
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 aaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||
Sbjct: 404 aaccaaaccaaaccaaaccaaa 425
Score = 42.1 bits (21), Expect = 0.039
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaacc 35
|||||||||||||||||||||
Sbjct: 407 caaaccaaaccaaaccaaacc 427
>gb|CW216268.1|CW216268 104_649_11195026_148_37127_047 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195026, DNA
sequence
Length = 625
Score = 44.1 bits (22), Expect = 0.010
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 aaaccaaaccaaaccaaaccaa 37
||||||||||||||||||||||
Sbjct: 373 aaaccaaaccaaaccaaaccaa 394
>gb|CW264162.1|CW264162 104_732_11231128_116_35305_052 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11231128, DNA
sequence
Length = 694
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaaccaaaga 40
|||||||||| |||||||||||||||
Sbjct: 171 caaaccaaacgaaaccaaaccaaaga 196
>gb|CW359200.1|CW359200 fsbb001f026l14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f026l14, DNA
sequence
Length = 720
Score = 44.1 bits (22), Expect = 0.010
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 16 aaaccaaaccaaaccaaaccaa 37
||||||||||||||||||||||
Sbjct: 224 aaaccaaaccaaaccaaaccaa 203
>gb|CW408708.1|CW408708 fsbb001f102l11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f102l11, DNA
sequence
Length = 800
Score = 44.1 bits (22), Expect = 0.010
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 aaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||
Sbjct: 642 aaccaaaccaaaccaaaccaaa 663
Score = 42.1 bits (21), Expect = 0.039
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaacc 35
|||||||||||||||||||||
Sbjct: 645 caaaccaaaccaaaccaaacc 665
>gb|CW408709.1|CW408709 fsbb001f102l11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f102l11, DNA
sequence
Length = 744
Score = 44.1 bits (22), Expect = 0.010
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 17 aaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||
Sbjct: 265 aaccaaaccaaaccaaaccaaa 244
Score = 42.1 bits (21), Expect = 0.039
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaacc 35
|||||||||||||||||||||
Sbjct: 262 caaaccaaaccaaaccaaacc 242
>gb|CW411903.1|CW411903 fsbb001f107e12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f107e12, DNA
sequence
Length = 649
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaaccaaaga 40
|||||||||| |||||||||||||||
Sbjct: 211 caaaccaaacgaaaccaaaccaaaga 186
>gb|CW480279.1|CW480279 fsbb001f239e06f0 Sorghum methylation filtered library (LibID:
104) Sorghum bicolor genomic clone fsbb001f239e06, DNA
sequence
Length = 100
Score = 44.1 bits (22), Expect = 0.010
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 aaaccaaaccaaaccaaaccaa 37
||||||||||||||||||||||
Sbjct: 75 aaaccaaaccaaaccaaaccaa 96
>gb|CW480280.1|CW480280 fsbb001f239e06k0 Sorghum methylation filtered library (LibID:
104) Sorghum bicolor genomic clone fsbb001f239e06, DNA
sequence
Length = 100
Score = 44.1 bits (22), Expect = 0.010
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 16 aaaccaaaccaaaccaaaccaa 37
||||||||||||||||||||||
Sbjct: 24 aaaccaaaccaaaccaaaccaa 3
>gb|CD430970.1|CD430970 ETH1_6_H06.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_6_H06_A002 3', mRNA sequence
Length = 535
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaaccaaaga 40
|||||||||| |||||||||||||||
Sbjct: 267 caaaccaaacgaaaccaaaccaaaga 242
>gb|CD431107.1|CD431107 ETH1_6_H06.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_6_H06_A002 5', mRNA sequence
Length = 632
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaaccaaaga 40
|||||||||| |||||||||||||||
Sbjct: 602 caaaccaaacgaaaccaaaccaaaga 577
>gb|BZ329384.1|BZ329384 hv85e08.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hv85e08 5', DNA sequence
Length = 672
Score = 42.1 bits (21), Expect = 0.039
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 acaaaccaaaccaaaccaaaccaaa 38
|||||||||||||||||||| ||||
Sbjct: 55 acaaaccaaaccaaaccaaaacaaa 79
Score = 42.1 bits (21), Expect = 0.039
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 acaaaccaaaccaaaccaaaccaaa 38
||||| |||||||||||||||||||
Sbjct: 50 acaaaacaaaccaaaccaaaccaaa 74
>gb|CW211841.1|CW211841 104_642_11190714_148_37016_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11190714, DNA
sequence
Length = 671
Score = 42.1 bits (21), Expect = 0.039
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 18 accaaaccaaaccaaaccaaa 38
|||||||||||||||||||||
Sbjct: 142 accaaaccaaaccaaaccaaa 162
>gb|CW237931.1|CW237931 104_694_11216443_148_37400_072 Sorghum methylation filtered
library (LibID: 104) Sorghum bicolor genomic clone
11216443, DNA sequence
Length = 649
Score = 42.1 bits (21), Expect = 0.039
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 acaaaccaaaccaaaccaaaccaaa 38
|||||||||||||||||||| ||||
Sbjct: 32 acaaaccaaaccaaaccaaaacaaa 56
Score = 42.1 bits (21), Expect = 0.039
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 acaaaccaaaccaaaccaaaccaaa 38
||||| |||||||||||||||||||
Sbjct: 27 acaaaacaaaccaaaccaaaccaaa 51
>gb|CW276660.1|CW276660 104_750_11405610_116_35397_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11405610, DNA
sequence
Length = 683
Score = 42.1 bits (21), Expect = 0.039
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaaccaaag 39
||||||||||||||||||| |||||
Sbjct: 392 caaaccaaaccaaaccaaagcaaag 368
>gb|CW378044.1|CW378044 fsbb001f056k06k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f056k06, DNA
sequence
Length = 752
Score = 42.1 bits (21), Expect = 0.039
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 18 accaaaccaaaccaaaccaaa 38
|||||||||||||||||||||
Sbjct: 337 accaaaccaaaccaaaccaaa 357
>gb|CW396958.1|CW396958 fsbb001f085k08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f085k08, DNA
sequence
Length = 686
Score = 42.1 bits (21), Expect = 0.039
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 18 accaaaccaaaccaaaccaaa 38
|||||||||||||||||||||
Sbjct: 433 accaaaccaaaccaaaccaaa 413
>gb|CW500146.1|CW500146 fsbb001f295e22k0 Sorghum methylation filtered library (LibID:
104) Sorghum bicolor genomic clone fsbb001f295e22, DNA
sequence
Length = 475
Score = 42.1 bits (21), Expect = 0.039
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 14 acaaaccaaaccaaaccaaac 34
|||||||||||||||||||||
Sbjct: 46 acaaaccaaaccaaaccaaac 26
>gb|BF587891.1|BF587891 FM1_34_B11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 580
Score = 42.1 bits (21), Expect = 0.039
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaacc 35
|||||||||||||||||||||
Sbjct: 172 caaaccaaaccaaaccaaacc 152
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 19 ccaaaccaaaccaaaccaaa 38
||||||||||||||||||||
Sbjct: 173 ccaaaccaaaccaaaccaaa 154
>gb|BZ331674.1|BZ331674 hx22a08.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hx22a08 5', DNA sequence
Length = 711
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 18 accaaaccaaaccaaaccaa 37
||||||||||||||||||||
Sbjct: 357 accaaaccaaaccaaaccaa 338
Score = 40.1 bits (20), Expect = 0.15
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
|||||||||||||||||| |||||
Sbjct: 355 caaaccaaaccaaaccaatccaaa 332
>gb|CL169140.1|CL169140 104_367_10812418_116_31787_274 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10812418, DNA
sequence
Length = 749
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 19 ccaaaccaaaccaaaccaaa 38
||||||||||||||||||||
Sbjct: 565 ccaaaccaaaccaaaccaaa 546
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaac 34
||||||||||||||||||||
Sbjct: 564 caaaccaaaccaaaccaaac 545
>gb|CL169141.1|CL169141 104_367_10812418_148_31786_274 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10812418, DNA
sequence
Length = 704
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaac 34
||||||||||||||||||||
Sbjct: 289 caaaccaaaccaaaccaaac 308
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 19 ccaaaccaaaccaaaccaaa 38
||||||||||||||||||||
Sbjct: 288 ccaaaccaaaccaaaccaaa 307
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 100,879
Number of Sequences: 832831
Number of extensions: 100879
Number of successful extensions: 30140
Number of sequences better than 0.5: 58
Number of HSP's better than 0.5 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29851
Number of HSP's gapped (non-prelim): 154
length of query: 412
length of database: 491,359,669
effective HSP length: 19
effective length of query: 393
effective length of database: 475,535,880
effective search space: 186885600840
effective search space used: 186885600840
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)