BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3023585.2.1
(635 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW054125.1|CW054125 104_294_10516350_114_30182 Sorghum m... 180 1e-043
gb|AW564753.1|AW564753 LG1_301_D09.b1_A002 Light Grown 1 (L... 127 1e-027
gb|AW564805.1|AW564805 LG1_301_F09.b1_A002 Light Grown 1 (L... 127 1e-027
gb|BF177091.1|BF177091 EM1_3_E09.g1_A002 Embryo 1 (EM1) Sor... 127 1e-027
gb|BG463628.1|BG463628 EM1_50_A05.g1_A002 Embryo 1 (EM1) So... 127 1e-027
gb|CF488341.1|CF488341 POL1_49_G04.b1_A002 Pollen Sorghum b... 113 2e-023
gb|BG103154.1|BG103154 RHIZ2_18_G08.g1_A003 Rhizome2 (RHIZ2... 111 8e-023
gb|DN551899.1|DN551899 pSPR-RT-MR-H1_B06_S170 pSPR Sorghum ... 111 8e-023
gb|BE593115.1|BE593115 WS1_97_F09.g1_A002 Water-stressed 1 ... 107 1e-021
gb|BE595663.1|BE595663 PI1_55_A07.g1_A002 Pathogen induced ... 107 1e-021
gb|CF487966.1|CF487966 POL1_47_A08.b1_A002 Pollen Sorghum b... 90 3e-016
gb|CF488045.1|CF488045 POL1_47_A08.g1_A002 Pollen Sorghum b... 90 3e-016
gb|BE593425.1|BE593425 WS1_97_F09.b1_A002 Water-stressed 1 ... 88 1e-015
gb|CL148074.1|CL148074 104_327_10592836_116_31781_344 Sorgh... 74 2e-011
gb|CW157762.1|CW157762 104_561_11147696_148_36393_028 Sorgh... 74 2e-011
gb|CW330844.1|CW330844 104_827_11480592_116_36010_082 Sorgh... 74 2e-011
gb|CW482935.1|CW482935 fsbb001f244e18f0 Sorghum methylation... 74 2e-011
gb|CW396612.1|CW396612 fsbb001f085c03k0 Sorghum methylation... 70 3e-010
gb|CW135737.1|CW135737 104_520_11118005_116_34836_023 Sorgh... 60 3e-007
gb|CW231166.1|CW231166 104_680_11210980_116_37342_010 Sorgh... 60 3e-007
gb|CW410447.1|CW410447 fsbb001f105d07f0 Sorghum methylation... 60 3e-007
gb|CW410448.1|CW410448 fsbb001f105d07k0 Sorghum methylation... 60 3e-007
gb|BF656550.1|BF656550 FM1_51_D09.g1_A003 Floral-Induced Me... 60 3e-007
gb|CF770746.1|CF770746 DSBF1_9_B10.g1_A010 Drought-stressed... 60 3e-007
gb|BI211673.1|BI211673 IP1_60_D12.g1_A002 Immature pannicle... 56 4e-006
gb|BE359363.1|BE359363 DG1_40_D01.g1_A002 Dark Grown 1 (DG1... 54 2e-005
gb|BF587838.1|BF587838 FM1_33_F06.g1_A003 Floral-Induced Me... 54 2e-005
gb|CW330845.1|CW330845 104_827_11480592_148_36009_082 Sorgh... 50 3e-004
gb|CW460238.1|CW460238 fsbb001f207f22f0 Sorghum methylation... 50 3e-004
gb|BZ366524.1|BZ366524 ic97f02.g1 WGS-SbicolorF (JM107 adap... 48 0.001
gb|CW030108.1|CW030108 104_258_10500065_114_30403 Sorghum m... 48 0.001
gb|CW089146.1|CW089146 104_434_10948530_115_32585_073 Sorgh... 48 0.001
gb|CW231167.1|CW231167 104_680_11210980_148_37338_010 Sorgh... 48 0.001
gb|CW789353.1|CW789353 SP__Ba0057C22.r SP__Ba Sorghum propi... 48 0.001
gb|CL162485.1|CL162485 104_354_10806435_116_31831_339 Sorgh... 44 0.015
gb|CW096176.1|CW096176 104_461_11001747_148_34328_004 Sorgh... 44 0.015
gb|CW407008.1|CW407008 fsbb001f100e16f0 Sorghum methylation... 44 0.015
gb|CL148075.1|CL148075 104_327_10592836_148_31780_344 Sorgh... 42 0.061
gb|CW096175.1|CW096175 104_461_11001747_116_34332_004 Sorgh... 42 0.061
gb|CW396611.1|CW396611 fsbb001f085c03f0 Sorghum methylation... 42 0.061
gb|CW482936.1|CW482936 fsbb001f244e18k0 Sorghum methylation... 42 0.061
gb|BE595671.1|BE595671 PI1_55_B08.g1_A002 Pathogen induced ... 42 0.061
gb|BZ347855.1|BZ347855 ho35g11.g1 WGS-SbicolorF (JM107 adap... 40 0.24
gb|CW178747.1|CW178747 104_592_11159733_116_36617_085 Sorgh... 40 0.24
gb|CW447924.1|CW447924 fsbb001f181e09k0 Sorghum methylation... 40 0.24
>gb|CW054125.1|CW054125 104_294_10516350_114_30182 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10516350, DNA
sequence
Length = 258
Score = 180 bits (91), Expect = 1e-043
Identities = 154/172 (89%), Gaps = 6/172 (3%)
Strand = Plus / Plus
Query: 257 ccaatggcacgaacggaggcttggtgaagcccctgcctgctgtgaaggagaaggtgaaaa 316
||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccaatagcacgaacggagtctcggtgaagcccctgcctgctgtgaaggagaaggtgaaaa 60
Query: 317 gggtgatgttctactgctgacgaggtgaccgctttaacaaccattcacatgctgtagcta 376
||||||||||||||||||||| ||| |||| ||| ||||| ||||||||||||||||
Sbjct: 61 gggtgatgttctactgctgacaaggagaccactt----aaccactcacatgctgtagcta 116
Query: 377 acttggtagggttcagtaggggattagattagctttctccaggaacgaagag 428
|||| |||| ||| |||| ||||||||| |||||||| ||||||| ||||||
Sbjct: 117 acttcgtagagtttagta-gggattaga-tagctttcgccaggaatgaagag 166
Score = 99.6 bits (50), Expect = 3e-019
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 443 atttggatcatgaacaatcaatctgttagcgatcgctgtaaaatactcggaaatgcctgt 502
||||||||||||| |||||||||||||| ||| | | ||||| ||||| ||||||||||
Sbjct: 173 atttggatcatgagcaatcaatctgttaccgacctcagtaaagtactcacaaatgcctgt 232
Query: 503 ataatagttcttgttggttcagatgc 528
|||||| |||||||||||||||||||
Sbjct: 233 ataataattcttgttggttcagatgc 258
>gb|AW564753.1|AW564753 LG1_301_D09.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 432
Score = 127 bits (64), Expect = 1e-027
Identities = 184/224 (82%)
Strand = Plus / Plus
Query: 4 tttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcactac 63
|||||||||||||| ||||| ||||| || || ||||||||||| | || ||||| |||
Sbjct: 187 tttgatttctacctgtgtagccatgccggcattcagggaacaagccgccctgctcattac 246
Query: 64 catgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaacaac 123
|||||||| |||||||||||||| || ||||| || || |||| || ||||||||||||
Sbjct: 247 catgtcctgtgggatgagaacaagtttacagctgatgagctgcagactctgacaaacaac 306
Query: 124 ctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatactac 183
|| |||||||| || || ||||||| ||||| || || |||| || || ||||||||
Sbjct: 307 ctgtgctacacgtacgctaggtgcactcgctccgtgtcaattgtgcccccggcatactat 366
Query: 184 gcacacctggcagcattccgggcgcggttctacatggaaccaga 227
|| || |||||||| ||||| || || ||||||||||| |||||
Sbjct: 367 gctcatctggcagccttccgagctcgcttctacatggagccaga 410
>gb|AW564805.1|AW564805 LG1_301_F09.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 435
Score = 127 bits (64), Expect = 1e-027
Identities = 184/224 (82%)
Strand = Plus / Plus
Query: 4 tttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcactac 63
|||||||||||||| ||||| ||||| || || ||||||||||| | || ||||| |||
Sbjct: 187 tttgatttctacctgtgtagccatgccggcattcagggaacaagccgccctgctcattac 246
Query: 64 catgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaacaac 123
|||||||| |||||||||||||| || ||||| || || |||| || ||||||||||||
Sbjct: 247 catgtcctgtgggatgagaacaagtttacagctgatgagctgcagactctgacaaacaac 306
Query: 124 ctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatactac 183
|| |||||||| || || ||||||| ||||| || || |||| || || ||||||||
Sbjct: 307 ctgtgctacacgtacgctaggtgcactcgctccgtgtcaattgtgcccccggcatactat 366
Query: 184 gcacacctggcagcattccgggcgcggttctacatggaaccaga 227
|| || |||||||| ||||| || || ||||||||||| |||||
Sbjct: 367 gctcatctggcagccttccgagctcgcttctacatggagccaga 410
>gb|BF177091.1|BF177091 EM1_3_E09.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 619
Score = 127 bits (64), Expect = 1e-027
Identities = 184/224 (82%)
Strand = Plus / Plus
Query: 4 tttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcactac 63
|||||||||||||| ||||| ||||| || || ||||||||||| | || ||||| |||
Sbjct: 24 tttgatttctacctgtgtagccatgccggcattcagggaacaagccgccctgctcattac 83
Query: 64 catgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaacaac 123
|||||||| |||||||||||||| || ||||| || || |||| || ||||||||||||
Sbjct: 84 catgtcctgtgggatgagaacaagtttacagctgatgagctgcagactctgacaaacaac 143
Query: 124 ctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatactac 183
|| |||||||| || || ||||||| ||||| || || |||| || || ||||||||
Sbjct: 144 ctgtgctacacgtacgctaggtgcactcgctccgtgtcaattgtgcccccggcatactat 203
Query: 184 gcacacctggcagcattccgggcgcggttctacatggaaccaga 227
|| || |||||||| ||||| || || ||||||||||| |||||
Sbjct: 204 gctcatctggcagccttccgagctcgcttctacatggagccaga 247
>gb|BG463628.1|BG463628 EM1_50_A05.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 611
Score = 127 bits (64), Expect = 1e-027
Identities = 184/224 (82%)
Strand = Plus / Plus
Query: 4 tttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcactac 63
|||||||||||||| ||||| ||||| || || ||||||||||| | || ||||| |||
Sbjct: 34 tttgatttctacctgtgtagccatgccggcattcagggaacaagccgccctgctcattac 93
Query: 64 catgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaacaac 123
|||||||| |||||||||||||| || ||||| || || |||| || ||||||||||||
Sbjct: 94 catgtcctgtgggatgagaacaagtttacagctgatgagctgcagactctgacaaacaac 153
Query: 124 ctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatactac 183
|| |||||||| || || ||||||| ||||| || || |||| || || ||||||||
Sbjct: 154 ctgtgctacacgtacgctaggtgcactcgctccgtgtcaattgtgcccccggcatactat 213
Query: 184 gcacacctggcagcattccgggcgcggttctacatggaaccaga 227
|| || |||||||| ||||| || || ||||||||||| |||||
Sbjct: 214 gctcatctggcagccttccgagctcgcttctacatggagccaga 257
>gb|CF488341.1|CF488341 POL1_49_G04.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_49_G04_A002 3', mRNA sequence
Length = 665
Score = 113 bits (57), Expect = 2e-023
Identities = 180/221 (81%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
|||||||| |||| ||| || || |||||||| ||| |||| || || | || ||||||
Sbjct: 2 gagtttgacttcttcctgtgcagccatgctggcatcaagggcacgagccgtcctgctcac 61
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
||||||||| | |||||||| ||||| |||||||| || | | |||| || || || ||
Sbjct: 62 taccatgtcttgtgggatgaaaacaacttcacagctgatgcattgcagacccttaccaat 121
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||||||||||||||||| || |||||||||| || || || ||||||| || ||||||
Sbjct: 122 aacctttgctacacttacgcgaggtgcacacgttctgtatccattgtcccaccagcatac 181
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatgga 221
||||| || || ||||||||||| || ||||||||||||||
Sbjct: 182 tacgctcatctagcagcattccgcgcccggttctacatgga 222
>gb|BG103154.1|BG103154 RHIZ2_18_G08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 567
Score = 111 bits (56), Expect = 8e-023
Identities = 182/224 (81%)
Strand = Plus / Plus
Query: 4 tttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcactac 63
|||||||||||||||||||| |||||||| || ||||||||||| | || || || ||
Sbjct: 121 tttgatttctacctctgtagccatgctggcattcagggaacaagccgccctgcccattat 180
Query: 64 catgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaacaac 123
|||||||| |||||||||||||| || || || || | ||||||| || || ||||||
Sbjct: 181 catgtcctgtgggatgagaacaaatttaccgcggatgggttgcaaactctcaccaacaac 240
Query: 124 ctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatactac 183
|| || ||||| ||||| ||||||| ||||| || || | || ||||||||||| ||
Sbjct: 241 ctgtgttacacgtatgctaggtgcactcgctcagtatcaatcgttcctcctgcatattat 300
Query: 184 gcacacctggcagcattccgggcgcggttctacatggaaccaga 227
|| ||||||||||| ||||| || || ||||||||||| |||||
Sbjct: 301 gctcacctggcagccttccgagctcgcttctacatggagccaga 344
>gb|DN551899.1|DN551899 pSPR-RT-MR-H1_B06_S170 pSPR Sorghum propinquum cDNA, mRNA sequence
Length = 884
Score = 111 bits (56), Expect = 8e-023
Identities = 182/224 (81%)
Strand = Plus / Minus
Query: 4 tttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcactac 63
|||||||||||||||||||| |||||||| || ||||||||||| | || || || ||
Sbjct: 553 tttgatttctacctctgtagccatgctggcattcagggaacaagccgccctgcccattat 494
Query: 64 catgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaacaac 123
|||||||| |||||||||||||| || || || || | ||||||| || || ||||||
Sbjct: 493 catgtcctgtgggatgagaacaaatttaccgcggatgggttgcaaactctcaccaacaac 434
Query: 124 ctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatactac 183
|| || ||||| ||||| ||||||| ||||| || || | || ||||||||||| ||
Sbjct: 433 ctgtgttacacgtatgctaggtgcactcgctcagtatcaatcgttcctcctgcatattat 374
Query: 184 gcacacctggcagcattccgggcgcggttctacatggaaccaga 227
|| ||||||||||| ||||| || || ||||||||||| |||||
Sbjct: 373 gctcacctggcagccttccgagctcgcttctacatggagccaga 330
>gb|BE593115.1|BE593115 WS1_97_F09.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 599
Score = 107 bits (54), Expect = 1e-021
Identities = 177/218 (81%)
Strand = Plus / Plus
Query: 4 tttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcactac 63
|||||||||||||||||||| |||||||| || ||||||||||| | || || || ||
Sbjct: 46 tttgatttctacctctgtagccatgctggcattcagggaacaagccgccctgcccattat 105
Query: 64 catgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaacaac 123
|||||||| |||||||||||||| || || || || | ||||||| || || ||||||
Sbjct: 106 catgtcctgtgggatgagaacaaatttaccgcggatgggttgcaaactctcaccaacaac 165
Query: 124 ctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatactac 183
|| || ||||| ||||| ||||||| ||||| || || | || ||||||||||| ||
Sbjct: 166 ctgtgttacacgtatgctaggtgcactcgctcagtatcaatcgttcctcctgcatattat 225
Query: 184 gcacacctggcagcattccgggcgcggttctacatgga 221
|| ||||||||||| ||||| || || |||||||||||
Sbjct: 226 gctcacctggcagccttccgagctcgcttctacatgga 263
>gb|BE595663.1|BE595663 PI1_55_A07.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 403
Score = 107 bits (54), Expect = 1e-021
Identities = 177/218 (81%)
Strand = Plus / Plus
Query: 4 tttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcactac 63
|||||||||||||||||||| |||||||| || ||||||||||| | || || || ||
Sbjct: 42 tttgatttctacctctgtagccatgctggcattcagggaacaagccgccctgcccattat 101
Query: 64 catgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaacaac 123
|||||||| |||||||||||||| || || || || | ||||||| || || ||||||
Sbjct: 102 catgtcctgtgggatgagaacaaatttaccgcggatgggttgcaaactctcaccaacaac 161
Query: 124 ctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatactac 183
|| || ||||| ||||| ||||||| ||||| || || | || ||||||||||| ||
Sbjct: 162 ctgtgttacacgtatgctaggtgcactcgctcagtatcaatcgttcctcctgcatattat 221
Query: 184 gcacacctggcagcattccgggcgcggttctacatgga 221
|| ||||||||||| ||||| || || |||||||||||
Sbjct: 222 gctcacctggcagccttccgagctcgcttctacatgga 259
>gb|CF487966.1|CF487966 POL1_47_A08.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_47_A08_A002 3', mRNA sequence
Length = 628
Score = 89.7 bits (45), Expect = 3e-016
Identities = 78/89 (87%)
Strand = Plus / Plus
Query: 115 acaaacaacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcct 174
|||||||||||||||||||| || || || ||||||||| | ||||||||||| || ||
Sbjct: 207 acaaacaacctttgctacacatacgcacgctgcacacgcgctgtttctgttgttccacca 266
Query: 175 gcatactacgcacacctggcagcattccg 203
|| |||||||| |||||||||||||||||
Sbjct: 267 gcctactacgctcacctggcagcattccg 295
Score = 87.7 bits (44), Expect = 1e-015
Identities = 74/84 (88%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
||||||||||||||||||||||| ||||||||||| |||||||||| ||||| | |||
Sbjct: 93 gagtttgatttctacctctgtagccatgctggaattaagggaacaagcaggccaacacac 152
Query: 61 taccatgtcctctgggatgagaac 84
|| |||||||||| |||||||||
Sbjct: 153 tatcatgtcctctatgatgagaac 176
>gb|CF488045.1|CF488045 POL1_47_A08.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_47_A08_A002 5', mRNA sequence
Length = 763
Score = 89.7 bits (45), Expect = 3e-016
Identities = 78/89 (87%)
Strand = Plus / Plus
Query: 115 acaaacaacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcct 174
|||||||||||||||||||| || || || ||||||||| | ||||||||||| || ||
Sbjct: 618 acaaacaacctttgctacacatacgcacgctgcacacgcgctgtttctgttgttccacca 677
Query: 175 gcatactacgcacacctggcagcattccg 203
|| |||||||| |||||||||||||||||
Sbjct: 678 gcctactacgctcacctggcagcattccg 706
Score = 87.7 bits (44), Expect = 1e-015
Identities = 74/84 (88%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
||||||||||||||||||||||| ||||||||||| |||||||||| ||||| | |||
Sbjct: 504 gagtttgatttctacctctgtagccatgctggaattaagggaacaagcaggccaacacac 563
Query: 61 taccatgtcctctgggatgagaac 84
|| |||||||||| |||||||||
Sbjct: 564 tatcatgtcctctatgatgagaac 587
>gb|BE593425.1|BE593425 WS1_97_F09.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 515
Score = 87.7 bits (44), Expect = 1e-015
Identities = 155/192 (80%)
Strand = Plus / Plus
Query: 4 tttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcactac 63
|||||||||||||||||||| |||||||| || ||||||||||| | || || || ||
Sbjct: 324 tttgatttctacctctgtagccatgctggcattcagggaacaagccgccctgcccattat 383
Query: 64 catgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaacaac 123
|||||||| |||||||||||||| || || || || | ||||||| || || ||||||
Sbjct: 384 catgtcctgtgggatgagaacaaatttaccgcggatgggttgcaaactctcaccaacaac 443
Query: 124 ctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatactac 183
|| || ||||| ||||| ||||||| ||||| || || | || ||||||||||| ||
Sbjct: 444 ctgtgttacacgtatgctaggtgcactcgctcagtatcaatcgttcctcctgcatattat 503
Query: 184 gcacacctggca 195
|| |||||||||
Sbjct: 504 gctcacctggca 515
>gb|CL148074.1|CL148074 104_327_10592836_116_31781_344 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10592836, DNA
sequence
Length = 711
Score = 73.8 bits (37), Expect = 2e-011
Identities = 82/97 (84%)
Strand = Plus / Plus
Query: 38 agggaacaagtaggcccgctcactaccatgtcctctgggatgagaacaatttcacagcag 97
|||||||||| | || ||||| ||||||||||| |||||||||||||| || ||||| |
Sbjct: 314 agggaacaagccgccctgctcattaccatgtcctgtgggatgagaacaagtttacagctg 373
Query: 98 acgaaatgcaaacactgacaaacaacctttgctacac 134
| || |||| || |||||||||||||| ||||||||
Sbjct: 374 atgagctgcagactctgacaaacaacctgtgctacac 410
Score = 42.1 bits (21), Expect = 0.061
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 175 gcatactacgcacacctggcagcattccgggcgcggttctacatggaaccaga 227
|||||||| || || |||||||| ||||| || || ||||||||||| |||||
Sbjct: 633 gcatactatgctcatctggcagccttccgagctcgcttctacatggagccaga 685
>gb|CW157762.1|CW157762 104_561_11147696_148_36393_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11147696, DNA
sequence
Length = 711
Score = 73.8 bits (37), Expect = 2e-011
Identities = 82/97 (84%)
Strand = Plus / Plus
Query: 38 agggaacaagtaggcccgctcactaccatgtcctctgggatgagaacaatttcacagcag 97
|||||||||| | || ||||| ||||||||||| |||||||||||||| || ||||| |
Sbjct: 171 agggaacaagccgccctgctcattaccatgtcctgtgggatgagaacaagtttacagctg 230
Query: 98 acgaaatgcaaacactgacaaacaacctttgctacac 134
| || |||| || |||||||||||||| ||||||||
Sbjct: 231 atgagctgcagactctgacaaacaacctgtgctacac 267
Score = 42.1 bits (21), Expect = 0.061
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 175 gcatactacgcacacctggcagcattccgggcgcggttctacatggaaccaga 227
|||||||| || || |||||||| ||||| || || ||||||||||| |||||
Sbjct: 490 gcatactatgctcatctggcagccttccgagctcgcttctacatggagccaga 542
>gb|CW330844.1|CW330844 104_827_11480592_116_36010_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480592, DNA
sequence
Length = 739
Score = 73.8 bits (37), Expect = 2e-011
Identities = 82/97 (84%)
Strand = Plus / Plus
Query: 38 agggaacaagtaggcccgctcactaccatgtcctctgggatgagaacaatttcacagcag 97
|||||||||| | || ||||| ||||||||||| |||||||||||||| || ||||| |
Sbjct: 211 agggaacaagccgccctgctcattaccatgtcctgtgggatgagaacaagtttacagctg 270
Query: 98 acgaaatgcaaacactgacaaacaacctttgctacac 134
| || |||| || |||||||||||||| ||||||||
Sbjct: 271 atgagctgcagactctgacaaacaacctgtgctacac 307
Score = 42.1 bits (21), Expect = 0.061
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 175 gcatactacgcacacctggcagcattccgggcgcggttctacatggaaccaga 227
|||||||| || || |||||||| ||||| || || ||||||||||| |||||
Sbjct: 530 gcatactatgctcatctggcagccttccgagctcgcttctacatggagccaga 582
>gb|CW482935.1|CW482935 fsbb001f244e18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f244e18, DNA
sequence
Length = 758
Score = 73.8 bits (37), Expect = 2e-011
Identities = 82/97 (84%)
Strand = Plus / Plus
Query: 38 agggaacaagtaggcccgctcactaccatgtcctctgggatgagaacaatttcacagcag 97
|||||||||| | || ||||| ||||||||||| |||||||||||||| || ||||| |
Sbjct: 6 agggaacaagccgccctgctcattaccatgtcctgtgggatgagaacaagtttacagctg 65
Query: 98 acgaaatgcaaacactgacaaacaacctttgctacac 134
| || |||| || |||||||||||||| ||||||||
Sbjct: 66 atgagctgcagactctgacaaacaacctgtgctacac 102
Score = 42.1 bits (21), Expect = 0.061
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 175 gcatactacgcacacctggcagcattccgggcgcggttctacatggaaccaga 227
|||||||| || || |||||||| ||||| || || ||||||||||| |||||
Sbjct: 325 gcatactatgctcatctggcagccttccgagctcgcttctacatggagccaga 377
>gb|CW396612.1|CW396612 fsbb001f085c03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f085c03, DNA
sequence
Length = 752
Score = 69.9 bits (35), Expect = 3e-010
Identities = 68/79 (86%)
Strand = Plus / Plus
Query: 56 ctcactaccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactga 115
|||| ||||||||||| |||||||||||||| || ||||| || || |||| || ||||
Sbjct: 1 ctcattaccatgtcctgtgggatgagaacaagtttacagctgatgagctgcagactctga 60
Query: 116 caaacaacctttgctacac 134
|||||||||| ||||||||
Sbjct: 61 caaacaacctgtgctacac 79
Score = 42.1 bits (21), Expect = 0.061
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 175 gcatactacgcacacctggcagcattccgggcgcggttctacatggaaccaga 227
|||||||| || || |||||||| ||||| || || ||||||||||| |||||
Sbjct: 302 gcatactatgctcatctggcagccttccgagctcgcttctacatggagccaga 354
>gb|CW135737.1|CW135737 104_520_11118005_116_34836_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11118005, DNA
sequence
Length = 710
Score = 60.0 bits (30), Expect = 3e-007
Identities = 71/82 (86%), Gaps = 2/82 (2%)
Strand = Plus / Minus
Query: 119 acaacctttgctacacttatgcccggtgcac-acgctcggtttctgttgtccctcctgca 177
|||||||||||||||| | |||||||||||| | || | |||||| | ||||| || |||
Sbjct: 359 acaacctttgctacacgtttgcccggtgcaccaagc-ctgtttctctcgtcccaccggca 301
Query: 178 tactacgcacacctggcagcat 199
||||||||||||||||| ||||
Sbjct: 300 tactacgcacacctggccgcat 279
>gb|CW231166.1|CW231166 104_680_11210980_116_37342_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11210980, DNA
sequence
Length = 712
Score = 60.0 bits (30), Expect = 3e-007
Identities = 108/134 (80%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
|||||||| |||| ||| || || |||||||| ||| |||| || || | || ||||||
Sbjct: 73 gagtttgacttcttcctgtgcagccatgctggcatcaagggcacgagccgtcctgctcac 132
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
||||||||| | |||||||| ||||| |||||||| || | | |||| || || || ||
Sbjct: 133 taccatgtcttgtgggatgaaaacaacttcacagctgatgcattgcagacccttaccaat 192
Query: 121 aacctttgctacac 134
||||||||||||||
Sbjct: 193 aacctttgctacac 206
Score = 48.1 bits (24), Expect = 0.001
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 166 gtccctcctgcatactacgcacacctggcagcattccgggcgcggttctacatgga 221
||||| || ||||||||||| || || || |||||||| || ||||||||||||||
Sbjct: 435 gtcccaccagcatactacgctcatctagctgcattccgcgcccggttctacatgga 490
>gb|CW410447.1|CW410447 fsbb001f105d07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f105d07, DNA
sequence
Length = 777
Score = 60.0 bits (30), Expect = 3e-007
Identities = 108/134 (80%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
|||||||| |||| ||| || || |||||||| ||| |||| || || | || ||||||
Sbjct: 606 gagtttgacttcttcctgtgcagccatgctggcatcaagggcacgagccgtcctgctcac 665
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
||||||||| | |||||||| ||||| |||||||| || | | |||| || || || ||
Sbjct: 666 taccatgtcttgtgggatgaaaacaacttcacagctgatgcattgcagacccttaccaat 725
Query: 121 aacctttgctacac 134
||||||||||||||
Sbjct: 726 aacctttgctacac 739
>gb|CW410448.1|CW410448 fsbb001f105d07k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f105d07, DNA
sequence
Length = 826
Score = 60.0 bits (30), Expect = 3e-007
Identities = 108/134 (80%)
Strand = Plus / Minus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
|||||||| |||| ||| || || |||||||| ||| |||| || || | || ||||||
Sbjct: 305 gagtttgacttcttcctgtgcagccatgctggcatcaagggcacgagccgtcctgctcac 246
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
||||||||| | |||||||| ||||| |||||||| || | | |||| || || || ||
Sbjct: 245 taccatgtcttgtgggatgaaaacaacttcacagctgatgcattgcagacccttaccaat 186
Query: 121 aacctttgctacac 134
||||||||||||||
Sbjct: 185 aacctttgctacac 172
>gb|BF656550.1|BF656550 FM1_51_D09.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 548
Score = 60.0 bits (30), Expect = 3e-007
Identities = 71/82 (86%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 119 acaacctttgctacacttatgcccggtgcac-acgctcggtttctgttgtccctcctgca 177
|||||||||||||||| | |||||||||||| | || | |||||| | ||||| || |||
Sbjct: 132 acaacctttgctacacgtttgcccggtgcaccaagc-ctgtttctctcgtcccaccggca 190
Query: 178 tactacgcacacctggcagcat 199
||||||||||||||||| ||||
Sbjct: 191 tactacgcacacctggccgcat 212
>gb|CF770746.1|CF770746 DSBF1_9_B10.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_9_B10_A010 3', mRNA sequence
Length = 548
Score = 60.0 bits (30), Expect = 3e-007
Identities = 126/158 (79%)
Strand = Plus / Plus
Query: 64 catgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaacaac 123
|||||||| |||||||||||||| || || || || | ||||||| || || ||||||
Sbjct: 33 catgtcctgtgggatgagaacaaatttaccgcggatgggttgcaaactctcaccaacaac 92
Query: 124 ctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatactac 183
|| || ||||| ||||| ||||||| ||||| || || | || ||||||||||| ||
Sbjct: 93 ctgtgttacacgtatgctaggtgcactcgctcagtatcaatcgttcctcctgcatattat 152
Query: 184 gcacacctggcagcattccgggcgcggttctacatgga 221
|| ||||||||||| ||||| || || || ||||||||
Sbjct: 153 gctcacctggcagccttccgagctcgcttttacatgga 190
>gb|BI211673.1|BI211673 IP1_60_D12.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 506
Score = 56.0 bits (28), Expect = 4e-006
Identities = 85/104 (81%)
Strand = Plus / Plus
Query: 118 aacaacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgca 177
|||||||| || ||||| ||||| ||||||| ||||| || || | || |||||||||
Sbjct: 41 aacaacctgtgttacacgtatgctaggtgcactcgctcagtatcaatcgttcctcctgca 100
Query: 178 tactacgcacacctggcagcattccgggcgcggttctacatgga 221
|| || || ||||||||||| ||||| || || |||||||||||
Sbjct: 101 tattatgctcacctggcagccttccgagctcgcttctacatgga 144
>gb|BE359363.1|BE359363 DG1_40_D01.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 678
Score = 54.0 bits (27), Expect = 2e-005
Identities = 138/175 (78%)
Strand = Plus / Plus
Query: 55 gctcactaccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactg 114
||||| || |||||| | |||||||| ||||| ||| | || ||||| |||| || ||
Sbjct: 139 gctcattatcatgtcttgtgggatgaaaacaacttctctgctgacgagttgcagactctt 198
Query: 115 acaaacaacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcct 174
||||||||||| || ||||||||||| ||||||| ||||| || || | || || ||
Sbjct: 199 acaaacaacctctgttacacttatgcaaggtgcacccgctctgtatcgatcgttccacca 258
Query: 175 gcatactacgcacacctggcagcattccgggcgcggttctacatggaaccagaga 229
|| || || || |||||||| || ||| |||| || || ||||||||||||||||
Sbjct: 259 gcgtattatgctcacctggctgccttcagggctcgtttttacatggaaccagaga 313
>gb|BF587838.1|BF587838 FM1_33_F06.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 437
Score = 54.0 bits (27), Expect = 2e-005
Identities = 138/175 (78%)
Strand = Plus / Plus
Query: 55 gctcactaccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactg 114
||||| || |||||| | |||||||| ||||| ||| | || ||||| |||| || ||
Sbjct: 132 gctcattatcatgtcttgtgggatgaaaacaacttctctgctgacgagttgcagactctt 191
Query: 115 acaaacaacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcct 174
||||||||||| || ||||||||||| ||||||| ||||| || || | || || ||
Sbjct: 192 acaaacaacctctgttacacttatgcaaggtgcacccgctctgtatcgatcgttccacca 251
Query: 175 gcatactacgcacacctggcagcattccgggcgcggttctacatggaaccagaga 229
|| || || || |||||||| || ||| |||| || || ||||||||||||||||
Sbjct: 252 gcgtattatgctcacctggctgccttcagggctcgtttttacatggaaccagaga 306
>gb|CW330845.1|CW330845 104_827_11480592_148_36009_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480592, DNA
sequence
Length = 727
Score = 50.1 bits (25), Expect = 3e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 74 gggatgagaacaatttcacagcagacgaaatgcaaacactgacaaacaacctttgctaca 133
||||||||||||| || ||||| || || |||| || |||||||||||||| |||||||
Sbjct: 727 gggatgagaacaagtttacagctgatgagctgcagactctgacaaacaacctgtgctaca 668
Query: 134 c 134
|
Sbjct: 667 c 667
Score = 42.1 bits (21), Expect = 0.061
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 175 gcatactacgcacacctggcagcattccgggcgcggttctacatggaaccaga 227
|||||||| || || |||||||| ||||| || || ||||||||||| |||||
Sbjct: 444 gcatactatgctcatctggcagccttccgagctcgcttctacatggagccaga 392
>gb|CW460238.1|CW460238 fsbb001f207f22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f207f22, DNA
sequence
Length = 371
Score = 50.1 bits (25), Expect = 3e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 169 cctcctgcatactacgcacacctggcagcattccgggcgcggttctacatgga 221
||||||||||| || || ||||||||||| ||||| || || |||||||||||
Sbjct: 243 cctcctgcatattatgctcacctggcagccttccgagctcgcttctacatgga 295
>gb|BZ366524.1|BZ366524 ic97f02.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic97f02 5', DNA sequence
Length = 722
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 1 gagtttgatttctacctctgtagtcatgctgg 32
||||||||||||||| | ||||||||||||||
Sbjct: 622 gagtttgatttctacttgtgtagtcatgctgg 591
Score = 46.1 bits (23), Expect = 0.004
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 37 cagggaacaagtaggcccgctcactaccatgtcctctgggatgagaa 83
|||||||||||| ||||| | || ||||||||||||| ||||||||
Sbjct: 507 cagggaacaagtcggcccacccattaccatgtcctctatgatgagaa 461
>gb|CW030108.1|CW030108 104_258_10500065_114_30403 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10500065, DNA
sequence
Length = 840
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 1 gagtttgatttctacctctgtagtcatgctgg 32
||||||||||||||| | ||||||||||||||
Sbjct: 219 gagtttgatttctacttgtgtagtcatgctgg 188
Score = 46.1 bits (23), Expect = 0.004
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 37 cagggaacaagtaggcccgctcactaccatgtcctctgggatgagaa 83
|||||||||||| ||||| | || ||||||||||||| ||||||||
Sbjct: 104 cagggaacaagtcggcccacccattaccatgtcctctatgatgagaa 58
>gb|CW089146.1|CW089146 104_434_10948530_115_32585_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10948530, DNA
sequence
Length = 742
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctgg 32
||||||||||||||| | ||||||||||||||
Sbjct: 335 gagtttgatttctacttgtgtagtcatgctgg 366
Score = 46.1 bits (23), Expect = 0.004
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 37 cagggaacaagtaggcccgctcactaccatgtcctctgggatgagaa 83
|||||||||||| ||||| | || ||||||||||||| ||||||||
Sbjct: 450 cagggaacaagtcggcccacccattaccatgtcctctatgatgagaa 496
>gb|CW231167.1|CW231167 104_680_11210980_148_37338_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11210980, DNA
sequence
Length = 688
Score = 48.1 bits (24), Expect = 0.001
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 166 gtccctcctgcatactacgcacacctggcagcattccgggcgcggttctacatgga 221
||||| || ||||||||||| || || || |||||||| || ||||||||||||||
Sbjct: 515 gtcccaccagcatactacgctcatctagctgcattccgcgcccggttctacatgga 460
>gb|CW789353.1|CW789353 SP__Ba0057C22.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0057C22 3', DNA sequence
Length = 515
Score = 48.1 bits (24), Expect = 0.001
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 166 gtccctcctgcatactacgcacacctggcagcattccgggcgcggttctacatgga 221
||||| || ||||||||||| || || || |||||||| || ||||||||||||||
Sbjct: 220 gtcccaccagcatactacgctcatctagctgcattccgcgcccggttctacatgga 275
>gb|CL162485.1|CL162485 104_354_10806435_116_31831_339 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10806435, DNA
sequence
Length = 719
Score = 44.1 bits (22), Expect = 0.015
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 178 tactacgcacacctggcagcattccg 203
|||||||| |||||||||||||||||
Sbjct: 436 tactacgctcacctggcagcattccg 461
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 115 acaaacaacctttgctacac 134
||||||||||||||||||||
Sbjct: 112 acaaacaacctttgctacac 131
Score = 40.1 bits (20), Expect = 0.24
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 37 cagggaacaagtaggcccgctcactaccatgtcctctgggatgagaac 84
||||||||||| ||||| | ||||| |||||||||| |||||||||
Sbjct: 34 cagggaacaagcaggccaacacactatcatgtcctctatgatgagaac 81
>gb|CW096176.1|CW096176 104_461_11001747_148_34328_004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11001747, DNA
sequence
Length = 512
Score = 44.1 bits (22), Expect = 0.015
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 178 tactacgcacacctggcagcattccg 203
|||||||| |||||||||||||||||
Sbjct: 494 tactacgctcacctggcagcattccg 469
>gb|CW407008.1|CW407008 fsbb001f100e16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f100e16, DNA
sequence
Length = 726
Score = 44.1 bits (22), Expect = 0.015
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 178 tactacgcacacctggcagcattccg 203
|||||||| |||||||||||||||||
Sbjct: 506 tactacgctcacctggcagcattccg 481
>gb|CL148075.1|CL148075 104_327_10592836_148_31780_344 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10592836, DNA
sequence
Length = 734
Score = 42.1 bits (21), Expect = 0.061
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 175 gcatactacgcacacctggcagcattccgggcgcggttctacatggaaccaga 227
|||||||| || || |||||||| ||||| || || ||||||||||| |||||
Sbjct: 508 gcatactatgctcatctggcagccttccgagctcgcttctacatggagccaga 456
>gb|CW096175.1|CW096175 104_461_11001747_116_34332_004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11001747, DNA
sequence
Length = 380
Score = 42.1 bits (21), Expect = 0.061
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgt 21
|||||||||||||||||||||
Sbjct: 360 gagtttgatttctacctctgt 380
>gb|CW396611.1|CW396611 fsbb001f085c03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f085c03, DNA
sequence
Length = 743
Score = 42.1 bits (21), Expect = 0.061
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 175 gcatactacgcacacctggcagcattccgggcgcggttctacatggaaccaga 227
|||||||| || || |||||||| ||||| || || ||||||||||| |||||
Sbjct: 627 gcatactatgctcatctggcagccttccgagctcgcttctacatggagccaga 575
>gb|CW482936.1|CW482936 fsbb001f244e18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f244e18, DNA
sequence
Length = 699
Score = 42.1 bits (21), Expect = 0.061
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 175 gcatactacgcacacctggcagcattccgggcgcggttctacatggaaccaga 227
|||||||| || || |||||||| ||||| || || ||||||||||| |||||
Sbjct: 635 gcatactatgctcatctggcagccttccgagctcgcttctacatggagccaga 583
>gb|BE595671.1|BE595671 PI1_55_B08.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 232
Score = 42.1 bits (21), Expect = 0.061
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 169 cctcctgcatactacgcacacctggcagcattccgggcgcggttctacatgga 221
|||| |||||| || || ||||||||||| ||||| || || |||||||||||
Sbjct: 53 cctcgtgcatattatgctcacctggcagccttccgagctcgcttctacatgga 105
>gb|BZ347855.1|BZ347855 ho35g11.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ho35g11 5', DNA sequence
Length = 485
Score = 40.1 bits (20), Expect = 0.24
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 1 gagtttgatttctacctctgtagtcatgctgg 32
||||||||||| ||||| ||||||||| ||||
Sbjct: 160 gagtttgatttttacctttgtagtcattctgg 129
>gb|CW178747.1|CW178747 104_592_11159733_116_36617_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11159733, DNA
sequence
Length = 692
Score = 40.1 bits (20), Expect = 0.24
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctgg 32
||||||||||| ||||| ||||||||| ||||
Sbjct: 493 gagtttgatttttacctttgtagtcattctgg 524
>gb|CW447924.1|CW447924 fsbb001f181e09k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f181e09, DNA
sequence
Length = 351
Score = 40.1 bits (20), Expect = 0.24
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 1 gagtttgatttctacctctgtagtcatgctgg 32
||||||||||| ||||| ||||||||| ||||
Sbjct: 239 gagtttgatttttacctttgtagtcattctgg 208
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 148,154
Number of Sequences: 832831
Number of extensions: 148154
Number of successful extensions: 39781
Number of sequences better than 0.5: 45
Number of HSP's better than 0.5 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39691
Number of HSP's gapped (non-prelim): 77
length of query: 635
length of database: 491,359,669
effective HSP length: 19
effective length of query: 616
effective length of database: 475,535,880
effective search space: 292930102080
effective search space used: 292930102080
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)