BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3012883.2.1
(1189 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN124556.1|CN124556 RHOH1_5_C04.g1_A002 Acid- and alkali... 1285 0.0
gb|CN124479.1|CN124479 RHOH1_5_C04.b1_A002 Acid- and alkali... 975 0.0
gb|CD224846.1|CD224846 CCC1_36_C07.g1_A007 Callus culture/c... 967 0.0
gb|CD224152.1|CD224152 CCC1_32_A06.b1_A007 Callus culture/c... 902 0.0
gb|BE355291.1|BE355291 DG1_114_C02.b1_A002 Dark Grown 1 (DG... 821 0.0
gb|BE355369.1|BE355369 DG1_114_C02.b2_A002 Dark Grown 1 (DG... 805 0.0
gb|BE355453.1|BE355453 DG1_114_C02.g1_A002 Dark Grown 1 (DG... 702 0.0
gb|BF422269.1|BF422269 FM1_13_D07.b1_A003 Floral-Induced Me... 694 0.0
gb|CD224173.1|CD224173 CCC1_32_A06.g1_A007 Callus culture/c... 690 0.0
gb|BF422211.1|BF422211 FM1_13_D07.g1_A003 Floral-Induced Me... 666 0.0
gb|CD224745.1|CD224745 CCC1_36_C07.b1_A007 Callus culture/c... 632 e-179
gb|CD219759.1|CD219759 CCC1_58_B12.g1_A007 Callus culture/c... 444 e-123
gb|CW095235.1|CW095235 104_460_11001185_116_34421_075 Sorgh... 174 1e-041
gb|CW095236.1|CW095236 104_460_11001185_148_34420_075 Sorgh... 165 1e-038
gb|CW435421.1|CW435421 fsbb001f151j02k0 Sorghum methylation... 165 1e-038
gb|CL174774.1|CL174774 104_379_10891892_148_31768_260 Sorgh... 60 5e-007
gb|CW151313.1|CW151313 104_552_11143870_116_36322_095 Sorgh... 60 5e-007
gb|CW435420.1|CW435420 fsbb001f151j02f0 Sorghum methylation... 60 5e-007
gb|CL174773.1|CL174773 104_379_10891892_116_31769_260 Sorgh... 56 8e-006
gb|CW151314.1|CW151314 104_552_11143870_148_36321_095 Sorgh... 56 8e-006
gb|CD219658.1|CD219658 CCC1_58_B12.b1_A007 Callus culture/c... 52 1e-004
>gb|CN124556.1|CN124556 RHOH1_5_C04.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_5_C04_A002 5', mRNA sequence
Length = 843
Score = 1285 bits (648), Expect = 0.0
Identities = 723/749 (96%)
Strand = Plus / Plus
Query: 91 ctcgccgccatgaacaacctcctcacggattcctttgagctccctcggcgggactcctca 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcgccgccatgaacaacctcctcacggattcctttgagctccctcggcgggactcctca 154
Query: 151 agagacgcagatattgaaatgggaatgcatcaggctgatgcttcagacaacttgaaagat 210
||||| || || ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 155 agagatgcggacattgaaatgggaatgcatcaggctgatgcttcagacaacttaaaggat 214
Query: 211 ttcttgaagaaggtcgatgcaattgagagtataattgcaaagctgtcaaatctattgaat 270
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 215 ttcttgaagaaggtcgatgcaattgagagtttaattgcaaagctgacaaatctattgaat 274
Query: 271 aagctccanactgcaaatgaggaatccnaagnagttacaaaagcaagttccatgaaagca 330
|||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 275 aagctccagactgcaaatgaggaatccaaagcagttacaaaagcaagttccatgaaagca 334
Query: 331 attaagcagcggatggagaaagatattgatgaagtggggaaaattgctcctcaggcaaag 390
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 335 attaagcagcggatggagaaagatattgatgaagtggggaaaattgctcgtcaggcaaag 394
Query: 391 acaaaagttgatgaactggaaagagataacctatcgaataggcaaaaacctggatgtgga 450
|||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||
Sbjct: 395 acaaaagttgatgaactggaaaaagataacttattgaataggcaaaaacctggatgtgga 454
Query: 451 aagggttctgccgtggaccgatcaagagagcaaactactggagcagtgaaaaagaaattg 510
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 455 aagggttctgccgtggaccgatcaagagagcagactactggagcagtagaaaagaaattg 514
Query: 511 aaggaacggatggatgattttcagaccttgagagaagcaatcaggcaagagtatcgagag 570
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 515 aaggagcggatggatgattttcagaccttgagagaagcaatcaggcaagagtatcgggag 574
Query: 571 gttgtcgaaagaagggtttttactgtaactggtaatcgtcctgatgaagagacaattgat 630
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gttgttgaaagaagggtttttactgtaactggtaatcgtcctgatgaagagacaattgat 634
Query: 631 gacttgatagagaccggaaaaagtgagcaaatattcaaagatgctatccaacatcaggga 690
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gatttgatagagactggaaaaagtgagcaaatattcaaagatgctatccaacatcaggga 694
Query: 691 agaggccagatactagacactgttgctgaaatacaggagcgacatgatgctgtaagggat 750
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 695 agaggccagatactggacacagttgctgaaatacaggagcgacatgatgctgtaagggat 754
Query: 751 ctagagaggaagcttctggagttgcaacagatattcatggacatggcagttcttgttgag 810
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 ctagagaggaagcttttggagttgcaacagatattcatggacatggcagttcttgttgag 814
Query: 811 gcgcaaggagacatgatcaacaacatcga 839
|| ||||||||||||||||||||||||||
Sbjct: 815 gctcaaggagacatgatcaacaacatcga 843
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 49 ggcctccgctctcctcgccgcccgcccgcc 78
|||||||| |||||||||||||||||||||
Sbjct: 42 ggcctccgttctcctcgccgcccgcccgcc 71
>gb|CN124479.1|CN124479 RHOH1_5_C04.b1_A002 Acid- and alkaline-treated roots Sorghum bicolor
cDNA clone RHOH1_5_C04_A002 3', mRNA sequence
Length = 850
Score = 975 bits (492), Expect = 0.0
Identities = 558/580 (96%)
Strand = Plus / Plus
Query: 429 taggcaaaaacctggatgtggaaagggttctgccgtggaccgatcaagagagcaaactac 488
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1 taggcaaaaacctggatgtggaaagggttctgccgtggaccgatcaagagagcagactac 60
Query: 489 tggagcagtgaaaaagaaattgaaggaacggatggatgattttcagaccttgagagaagc 548
||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 61 tggagcagtagaaaagaaattgaaggagcggatggatgattttcagaccttgagagaagc 120
Query: 549 aatcaggcaagagtatcgagaggttgtcgaaagaagggtttttactgtaactggtaatcg 608
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 121 aatcaggcaagagtatcgggaggttgttgaaagaagggtttttactgtaactggtaatcg 180
Query: 609 tcctgatgaagagacaattgatgacttgatagagaccggaaaaagtgagcaaatattcaa 668
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 181 tcctgatgaagagacaattgatgatttgatagagactggaaaaagtgagcaaatattcaa 240
Query: 669 agatgctatccaacatcagggaagaggccagatactagacactgttgctgaaatacagga 728
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 241 agatgctatccaacatcagggaagaggccagatactggacacagttgctgaaatacagga 300
Query: 729 gcgacatgatgctgtaagggatctagagaggaagcttctggagttgcaacagatattcat 788
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 301 gcgacatgatgctgtaagggatctagagaggaagcttttggagttgcaacagatattcat 360
Query: 789 ggacatggcagttcttgttgaggcgcaaggagacatgatcaacaacatcgagacccatgt 848
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 361 ggacatggcagttcttgttgaggctcaaggagacatgatcaacaacatcgagacacatgt 420
Query: 849 ctcgaacgccaccaaccacatacagcaaggtgtgagcgcgctccagaacgcgaagaaact 908
||||||||||||||| ||||||||||||||||||| ||| ||||||| ||||||||||||
Sbjct: 421 ctcgaacgccaccaatcacatacagcaaggtgtgaccgcactccagagcgcgaagaaact 480
Query: 909 gcagaggaattcgaggaagtggatgtgctacgccatcatcatactgctggtgatagtcgt 968
||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||| ||
Sbjct: 481 gcagaagaattcgaggaagtggatgtgctatgccatcatcctactgctggtgatagtggt 540
Query: 969 ggtcattgtcgtcgcagtcatccagccatggaagaagggc 1008
||||||||||||||| ||||||||||||||||||||||||
Sbjct: 541 ggtcattgtcgtcgcggtcatccagccatggaagaagggc 580
Score = 58.0 bits (29), Expect = 2e-006
Identities = 88/109 (80%), Gaps = 6/109 (5%)
Strand = Plus / Plus
Query: 1035 ctgtttgtgtaatatgtgtgcagnnnnnnnngtgggtgattcgtgatttgtt-----gtt 1089
||||||||||||||||||||||| | |||||||||||||||| || |||
Sbjct: 641 ctgtttgtgtaatatgtgtgcagttttttgtg-gggtgattcgtgatttattatatcgtt 699
Query: 1090 gtacctatagtcgacgcaacaggagctctggcatttcgattcattctgt 1138
|||||||| |||||| || ||| |||| ||||||||| |||||||||||
Sbjct: 700 gtacctatggtcgacacatcagaagctttggcatttctattcattctgt 748
>gb|CD224846.1|CD224846 CCC1_36_C07.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_36_C07_A007 5', mRNA sequence
Length = 671
Score = 967 bits (488), Expect = 0.0
Identities = 548/569 (96%)
Strand = Plus / Plus
Query: 91 ctcgccgccatgaacaacctcctcacggattcctttgagctccctcggcgggactcctca 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 ctcgccgccatgaacaacctcctcacggattcctttgagctccctcggcgggactcctca 162
Query: 151 agagacgcagatattgaaatgggaatgcatcaggctgatgcttcagacaacttgaaagat 210
||||| || || ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 163 agagatgcggacattgaaatgggaatgcatcaggctgatgcttcagacaacttaaaggat 222
Query: 211 ttcttgaagaaggtcgatgcaattgagagtataattgcaaagctgtcaaatctattgaat 270
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 223 ttcttgaagaaggtcgatgcaattgagagtttaattgcaaagctgacaaatctattgaat 282
Query: 271 aagctccanactgcaaatgaggaatccnaagnagttacaaaagcaagttccatgaaagca 330
|||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 283 aagctccagactgcaaatgaggaatccaaagcagttacaaaagcaagttccatgaaagca 342
Query: 331 attaagcagcggatggagaaagatattgatgaagtggggaaaattgctcctcaggcaaag 390
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 343 attaagcagcggatggagaaagatattgatgaagtggggaaaattgctcgtcaggcaaag 402
Query: 391 acaaaagttgatgaactggaaagagataacctatcgaataggcaaaaacctggatgtgga 450
|||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||
Sbjct: 403 acaaaagttgatgaactggaaaaagataacttattgaataggcaaaaacctggatgtgga 462
Query: 451 aagggttctgccgtggaccgatcaagagagcaaactactggagcagtgaaaaagaaattg 510
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 463 aagggttctgccgtggaccgatcaagagagcagactactggagcagtaaaaaagaaattg 522
Query: 511 aaggaacggatggatgattttcagaccttgagagaagcaatcaggcaagagtatcgagag 570
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 523 aaggagcggatggatgattttcagaccttgagagaagcaatcaggcaagagtatcgggag 582
Query: 571 gttgtcgaaagaagggtttttactgtaactggtaatcgtcctgatgaagagacaattgat 630
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 gttgttgaaagaagggtttttactgtaactggtaatcgtcctgatgaagagacaattgat 642
Query: 631 gacttgatagagaccggaaaaagtgagca 659
|| ||||||||||| ||||||||||||||
Sbjct: 643 gatttgatagagactggaaaaagtgagca 671
Score = 60.0 bits (30), Expect = 5e-007
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 49 ggcctccgctctcctcgccgcccgcccgcc 78
||||||||||||||||||||||||||||||
Sbjct: 43 ggcctccgctctcctcgccgcccgcccgcc 72
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcgcaacggccacaccttcc 20
||||||||||||||||||||
Sbjct: 14 gcgcaacggccacaccttcc 33
>gb|CD224152.1|CD224152 CCC1_32_A06.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_32_A06_A007 3', mRNA sequence
Length = 672
Score = 902 bits (455), Expect = 0.0
Identities = 518/539 (96%)
Strand = Plus / Plus
Query: 470 gatcaagagagcaaactactggagcagtgaaaaagaaattgaaggaacggatggatgatt 529
||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 1 gatcaagagagcagactactggagcagtaaaaaagaaattgaaggagcggatggatgatt 60
Query: 530 ttcagaccttgagagaagcaatcaggcaagagtatcgagaggttgtcgaaagaagggttt 589
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 61 ttcagaccttgagagaagcaatcaggcaagagtatcgggaggttgttgaaagaagggttt 120
Query: 590 ttactgtaactggtaatcgtcctgatgaagagacaattgatgacttgatagagaccggaa 649
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 121 ttactgtaactggtaatcgtcctgatgaagagacaattgatgatttgatagagactggaa 180
Query: 650 aaagtgagcaaatattcaaagatgctatccaacatcagggaagaggccagatactagaca 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 181 aaagtgagcaaatattcaaagatgctatccaacatcagggaagaggccagatactggaca 240
Query: 710 ctgttgctgaaatacaggagcgacatgatgctgtaagggatctagagaggaagcttctgg 769
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 241 cagttgctgaaatacaggagcgacatgatgctgtaagggatctagagaggaagcttttgg 300
Query: 770 agttgcaacagatattcatggacatggcagttcttgttgaggcgcaaggagacatgatca 829
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 301 agttgcaacagatattcatggacatggcagttcttgttgaggctcaaggagacatgatca 360
Query: 830 acaacatcgagacccatgtctcgaacgccaccaaccacatacagcaaggtgtgagcgcgc 889
||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||| |
Sbjct: 361 acaacatcgagacacatgtctcgaacgccaccaatcacatacagcaaggtgtgaccgcac 420
Query: 890 tccagaacgcgaagaaactgcagaggaattcgaggaagtggatgtgctacgccatcatca 949
|||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 421 tccagagcgcgaagaaactgcagaagaattcgaggaagtggatgtgctatgccatcatcc 480
Query: 950 tactgctggtgatagtcgtggtcattgtcgtcgcagtcatccagccatggaagaagggc 1008
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 481 tactgctggtgatagtggtggtcattgtcgtcgcggtcatccagccatggaagaagggc 539
Score = 46.1 bits (23), Expect = 0.007
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1035 ctgtttgtgtaatatgtgtgcag 1057
|||||||||||||||||||||||
Sbjct: 600 ctgtttgtgtaatatgtgtgcag 622
>gb|BE355291.1|BE355291 DG1_114_C02.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 523
Score = 821 bits (414), Expect = 0.0
Identities = 465/483 (96%)
Strand = Plus / Plus
Query: 91 ctcgccgccatgaacaacctcctcacggattcctttgagctccctcggcgggactcctca 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41 ctcgccgccatgaacaacctcctcacggattcctttgagctccctcggcgggactcctca 100
Query: 151 agagacgcagatattgaaatgggaatgcatcaggctgatgcttcagacaacttgaaagat 210
||||| || || ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 101 agagatgcggacattgaaatgggaatgcatcaggctgatgcttcagacaacttaaaggat 160
Query: 211 ttcttgaagaaggtcgatgcaattgagagtataattgcaaagctgtcaaatctattgaat 270
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 161 ttcttgaagaaggtcgatgcaattgagagtttaattgcaaagctgacaaatctattgaat 220
Query: 271 aagctccanactgcaaatgaggaatccnaagnagttacaaaagcaagttccatgaaagca 330
|||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 221 aagctccagactgcaaatgaggaatccaaagcagttacaaaagcaagttccatgaaagca 280
Query: 331 attaagcagcggatggagaaagatattgatgaagtggggaaaattgctcctcaggcaaag 390
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 281 attaagcagcggatggagaaagatattgatgaagtggggaaaattgctcgtcaggcaaag 340
Query: 391 acaaaagttgatgaactggaaagagataacctatcgaataggcaaaaacctggatgtgga 450
|||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||
Sbjct: 341 acaaaagttgatgaactggaaaaagataacttattgaataggcaaaaacctggatgtgga 400
Query: 451 aagggttctgccgtggaccgatcaagagagcaaactactggagcagtgaaaaagaaattg 510
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 401 aagggttctgccgtggaccgatcaagagagcagactactggagcagtaaaaaagaaattg 460
Query: 511 aaggaacggatggatgattttcagaccttgagagaagcaatcaggcaagagtatcgagag 570
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 461 aaggagcggatggatgattttcagaccttgagagaagcaatcaggcaagagtatcgggag 520
Query: 571 gtt 573
|||
Sbjct: 521 gtt 523
>gb|BE355369.1|BE355369 DG1_114_C02.b2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 511
Score = 805 bits (406), Expect = 0.0
Identities = 454/471 (96%)
Strand = Plus / Plus
Query: 91 ctcgccgccatgaacaacctcctcacggattcctttgagctccctcggcgggactcctca 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41 ctcgccgccatgaacaacctcctcacggattcctttgagctccctcggcgggactcctca 100
Query: 151 agagacgcagatattgaaatgggaatgcatcaggctgatgcttcagacaacttgaaagat 210
||||| || || ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 101 agagatgcggacattgaaatgggaatgcatcaggctgatgcttcagacaacttaaaggat 160
Query: 211 ttcttgaagaaggtcgatgcaattgagagtataattgcaaagctgtcaaatctattgaat 270
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 161 ttcttgaagaaggtcgatgcaattgagagtttaattgcaaagctgacaaatctattgaat 220
Query: 271 aagctccanactgcaaatgaggaatccnaagnagttacaaaagcaagttccatgaaagca 330
|||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 221 aagctccagactgcaaatgaggaatccaaagcagttacaaaagcaagttccatgaaagca 280
Query: 331 attaagcagcggatggagaaagatattgatgaagtggggaaaattgctcctcaggcaaag 390
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 281 attaagcagcggatggagaaagatattgatgaagtggggaaaattgctcgtcaggcaaag 340
Query: 391 acaaaagttgatgaactggaaagagataacctatcgaataggcaaaaacctggatgtgga 450
|||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||
Sbjct: 341 acaaaagttgatgaactggaaaaagataacttattgaataggcaaaaacctggatgtgga 400
Query: 451 aagggttctgccgtggaccgatcaagagagcaaactactggagcagtgaaaaagaaattg 510
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 401 aagggttctgccgtggaccgatcaagagagcagactactggagcagtaaaaaagaaattg 460
Query: 511 aaggaacggatggatgattttcagaccttgagagaagcaatcaggcaagag 561
||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 aaggagcggatggatgattttcagaccttgagagaagcaatcaggcaagag 511
>gb|BE355453.1|BE355453 DG1_114_C02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 693
Score = 702 bits (354), Expect = 0.0
Identities = 408/426 (95%)
Strand = Plus / Plus
Query: 583 agggtttttactgtaactggtaatcgtcctgatgaagagacaattgatgacttgatagag 642
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 1 agggtttttactgtaactggtaatcgtcttgatgaagagacaattgatgatttgatagag 60
Query: 643 accggaaaaagtgagcaaatattcaaagatgctatccaacatcagggaagaggccagata 702
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 actggaaaaagtgagcaaatattcaaagatgctatccaacatcagggaagaggccagata 120
Query: 703 ctagacactgttgctgaaatacaggagcgacatgatgctgtaagggatctagagaggaag 762
|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctgtacacagttgctgaaatacaggagcgacatgatgctgtaagggatctagagaggaag 180
Query: 763 cttctggagttgcaacagatattcatggacatggcagttcttgttgaggcgcaaggagac 822
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 181 cttttggagttgcaacagatattcatggacatggcagttcttgttgaggctcaaggagac 240
Query: 823 atgatcaacaacatcgagacccatgtctcgaacgccaccaaccacatacagcaaggtgtg 882
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 241 atgatcaacaacatcgagacacatgtctcgaacgccaccaatcacatacagcaaggtgtg 300
Query: 883 agcgcgctccagaacgcgaagaaactgcagaggaattcgaggaagtggatgtgctacgcc 942
| ||| ||||||| ||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 301 accgcactccagagcgcgaagaaactgcagaagaattcgaggaagtggatgtgctatgcc 360
Query: 943 atcatcatactgctggtgatagtcgtggtcattgtcgtcgcagtcatccagccatggaag 1002
|||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 361 atcatcctactgctggtgatagtggtggtcattgtcgtcgcggtcatccagccatggaag 420
Query: 1003 aagggc 1008
||||||
Sbjct: 421 aagggc 426
Score = 58.0 bits (29), Expect = 2e-006
Identities = 88/109 (80%), Gaps = 6/109 (5%)
Strand = Plus / Plus
Query: 1035 ctgtttgtgtaatatgtgtgcagnnnnnnnngtgggtgattcgtgatttgtt-----gtt 1089
||||||||||||||||||||||| | |||||||||||||||| || |||
Sbjct: 487 ctgtttgtgtaatatgtgtgcagttttttgtg-gggtgattcgtgatttattatatcgtt 545
Query: 1090 gtacctatagtcgacgcaacaggagctctggcatttcgattcattctgt 1138
|||||||| |||||| || ||| |||| ||||||||| |||||||||||
Sbjct: 546 gtacctatggtcgacacatcagaagctttggcatttctattcattctgt 594
>gb|BF422269.1|BF422269 FM1_13_D07.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 448
Score = 694 bits (350), Expect = 0.0
Identities = 389/403 (96%)
Strand = Plus / Plus
Query: 91 ctcgccgccatgaacaacctcctcacggattcctttgagctccctcggcgggactcctca 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45 ctcgccgccatgaacaacctcctcacggattcctttgagctccctcggcgggactcctca 104
Query: 151 agagacgcagatattgaaatgggaatgcatcaggctgatgcttcagacaacttgaaagat 210
||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 105 agagatgcagacattgaaatgggaatgcatcaggctgatgcttcagacaacttaaaggat 164
Query: 211 ttcttgaagaaggtcgatgcaattgagagtataattgcaaagctgtcaaatctattgaat 270
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 165 ttcttgaagaaggtcgatgcaattgagagtttaattgcaaagctgacaaatctattgaat 224
Query: 271 aagctccanactgcaaatgaggaatccnaagnagttacaaaagcaagttccatgaaagca 330
|||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 225 aagctccagactgcaaatgaggaatccaaagcagttacaaaagcaagttccatgaaagca 284
Query: 331 attaagcagcggatggagaaagatattgatgaagtggggaaaattgctcctcaggcaaag 390
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 285 attaagcagcggatggagaaagatattgatgaagtggggaaaattgctcgtcaggcaaag 344
Query: 391 acaaaagttgatgaactggaaagagataacctatcgaataggcaaaaacctggatgtgga 450
|||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||
Sbjct: 345 acaaaagttgatgaactggaaaaagataacttattgaataggcaaaaacctggatgtgga 404
Query: 451 aagggttctgccgtggaccgatcaagagagcaaactactggag 493
|||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 405 aagggttctgccgtggaccgatcaagagagcagactactggag 447
>gb|CD224173.1|CD224173 CCC1_32_A06.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_32_A06_A007 5', mRNA sequence
Length = 483
Score = 690 bits (348), Expect = 0.0
Identities = 390/405 (96%)
Strand = Plus / Plus
Query: 91 ctcgccgccatgaacaacctcctcacggattcctttgagctccctcggcgggactcctca 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 ctcgccgccatgaacaacctcctcacggattcctttgagctccctcggcgggactcctca 138
Query: 151 agagacgcagatattgaaatgggaatgcatcaggctgatgcttcagacaacttgaaagat 210
||||| || || ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 139 agagatgcggacattgaaatgggaatgcatcaggctgatgcttcagacaacttaaaggat 198
Query: 211 ttcttgaagaaggtcgatgcaattgagagtataattgcaaagctgtcaaatctattgaat 270
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 199 ttcttgaagaaggtcgatgcaattgagagtttaattgcaaagctgacaaatctattgaat 258
Query: 271 aagctccanactgcaaatgaggaatccnaagnagttacaaaagcaagttccatgaaagca 330
|||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 259 aagctccagactgcaaatgaggaatccaaagcagttacaaaagcaagttccatgaaagca 318
Query: 331 attaagcagcggatggagaaagatattgatgaagtggggaaaattgctcctcaggcaaag 390
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 319 attaagcagcggatggagaaagatattgatgaagtggggaaaattgctcgtcaggcaaag 378
Query: 391 acaaaagttgatgaactggaaagagataacctatcgaataggcaaaaacctggatgtgga 450
|||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||
Sbjct: 379 acaaaagttgatgaactggaaaaagataacttattgaataggcaaaaacctggatgtgga 438
Query: 451 aagggttctgccgtggaccgatcaagagagcaaactactggagca 495
|||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 439 aagggttctgccgtggaccgatcaagagagcagactactggagca 483
Score = 60.0 bits (30), Expect = 5e-007
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 49 ggcctccgctctcctcgccgcccgcccgcc 78
||||||||||||||||||||||||||||||
Sbjct: 19 ggcctccgctctcctcgccgcccgcccgcc 48
>gb|BF422211.1|BF422211 FM1_13_D07.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 585
Score = 666 bits (336), Expect = 0.0
Identities = 389/407 (95%)
Strand = Plus / Plus
Query: 602 gtaatcgtcctgatgaagagacaattgatgacttgatagagaccggaaaaagtgagcaaa 661
||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct: 1 gtaatcgtcctgatgaagagacaattgatgatttgatagagactggaaanagtgagcaaa 60
Query: 662 tattcaaagatgctatccaacatcagggaagaggccagatactagacactgttgctgaaa 721
||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 61 tattcaaagatgctatccagcatcagggaagaggccagatactggacacagttgctgaaa 120
Query: 722 tacaggagcgacatgatgctgtaagggatctagagaggaagcttctggagttgcaacaga 781
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 121 tacaggagcgacatgatgctgtaagggatctagagaggaagcttttggagttgcaacaga 180
Query: 782 tattcatggacatggcagttcttgttgaggcgcaaggagacatgatcaacaacatcgaga 841
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 181 tattcatggacatggcagttcttgttgaggctcaaggagacatgatcaacaacatcgaga 240
Query: 842 cccatgtctcgaacgccaccaaccacatacagcaaggtgtgagcgcgctccagaacgcga 901
| |||||||||||||||||||| ||||||||||||||||||| ||| ||||||| |||||
Sbjct: 241 cacatgtctcgaacgccaccaatcacatacagcaaggtgtgaccgcactccagagcgcga 300
Query: 902 agaaactgcagaggaattcgaggaagtggatgtgctacgccatcatcatactgctggtga 961
|||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 301 agaaactgcagaagaattcgaggaagtggatgtgctatgccatcatcctactgctggtga 360
Query: 962 tagtcgtggtcattgtcgtcgcagtcatccagccatggaagaagggc 1008
|||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 361 tagtggtggtcattgtcgtcgcggtcatccagccatggaagaagggc 407
Score = 46.1 bits (23), Expect = 0.007
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1035 ctgtttgtgtaatatgtgtgcag 1057
|||||||||||||||||||||||
Sbjct: 468 ctgtttgtgtaatatgtgtgcag 490
Score = 44.1 bits (22), Expect = 0.029
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 1087 gttgtacctatagtcgacgcaacaggagctctggcatt 1124
||||||||||| |||||| |||||| |||| |||||||
Sbjct: 524 gttgtacctatggtcgacacaacagaagctttggcatt 561
>gb|CD224745.1|CD224745 CCC1_36_C07.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_36_C07_A007 3', mRNA sequence
Length = 649
Score = 632 bits (319), Expect = e-179
Identities = 376/395 (95%)
Strand = Plus / Plus
Query: 614 atgaagagacaattgatgacttgatagagaccggaaaaagtgagcaaatattcaaagatg 673
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 atgaagagacaattgatgatttgatagagactggaaaaagtgagcaaatattcaaagatg 60
Query: 674 ctatccaacatcagggaagaggccagatactagacactgttgctgaaatacaggagcgac 733
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 61 ctatccaacatcagggaagaggccagatactggacacagttgctgaaatacaggagcgac 120
Query: 734 atgatgctgtaagggatctagagaggaagcttctggagttgcaacagatattcatggaca 793
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 121 atgatgctgtaagggatctagagaggaagcttttggagttgcaacagatattcatggaca 180
Query: 794 tggcagttcttgttgaggcgcaaggagacatgatcaacaacatcgagacccatgtctcga 853
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 181 tggcagttcttgttgaggctcaaggagacatgatcaacaacatcgagacacatgtctcga 240
Query: 854 acgccaccaaccacatacagcaaggtgtgagcgcgctccagaacgcgaagaaactgcaga 913
||||| |||| |||||||||||||||||| ||| ||||||| |||||||||||||||||
Sbjct: 241 acgcccccaatcacatacagcaaggtgtggccgcactccagagcgcgaagaaactgcaga 300
Query: 914 ggaattcgaggaagtggatgtgctacgccatcatcatactgctggtgatagtcgtggtca 973
|||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||
Sbjct: 301 agaattcgaggaagtggatgtgctatgccatcatcctactgctggtgatagtggtggtca 360
Query: 974 ttgtcgtcgcagtcatccagccatggaagaagggc 1008
|||||||| | ||||||||||||||||||||||||
Sbjct: 361 ttgtcgtcacggtcatccagccatggaagaagggc 395
Score = 58.0 bits (29), Expect = 2e-006
Identities = 88/109 (80%), Gaps = 6/109 (5%)
Strand = Plus / Plus
Query: 1035 ctgtttgtgtaatatgtgtgcagnnnnnnnngtgggtgattcgtgatttgtt-----gtt 1089
||||||||||||||||||||||| | |||||||||||||||| || |||
Sbjct: 456 ctgtttgtgtaatatgtgtgcagttttttgtg-gggtgattcgtgatttattatatcgtt 514
Query: 1090 gtacctatagtcgacgcaacaggagctctggcatttcgattcattctgt 1138
|||||||| |||||| || ||| |||| ||||||||| |||||||||||
Sbjct: 515 gtacctatggtcgacacatcagaagctttggcatttctattcattctgt 563
>gb|CD219759.1|CD219759 CCC1_58_B12.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_58_B12_A007 5', mRNA sequence
Length = 649
Score = 444 bits (224), Expect = e-123
Identities = 257/269 (95%)
Strand = Plus / Plus
Query: 144 ctcctcaagagacgcagatattgaaatgggaatgcatcaggctgatgcttcagacaactt 203
|||||||||||| || || ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 378 ctcctcaagagatgcggacattgaaatggggatgcatcaggctgatgcttcagacaactt 437
Query: 204 gaaagatttcttgaagaaggtcgatgcaattgagagtataattgcaaagctgtcaaatct 263
|| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 438 aaaggatttcttgaagaaggtcgatgcaattgagagtttaattgcaaagctgacaaatct 497
Query: 264 attgaataagctccanactgcaaatgaggaatccnaagnagttacaaaagcaagttccat 323
||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 498 attgaataagctccagactgcaaatgaggaatccaaagcagttacaaaagcaagttccat 557
Query: 324 gaaagcaattaagcagcggatggagaaagatattgatgaagtggggaaaattgctcctca 383
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 558 gaaagcaattaagcagcggatggagaaagatattgatgaagtggggaaaattgctcgtca 617
Query: 384 ggcaaagacaaaagttgatgaactggaaa 412
|||||||||||||||||||||||||||||
Sbjct: 618 ggcaaagacaaaagttgatgaactggaaa 646
>gb|CW095235.1|CW095235 104_460_11001185_116_34421_075 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11001185, DNA
sequence
Length = 658
Score = 174 bits (88), Expect = 1e-041
Identities = 103/108 (95%)
Strand = Plus / Plus
Query: 117 ggattcctttgagctccctcggcgggactcctcaagagacgcagatattgaaatgggaat 176
||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct: 246 ggattcctttgagctccctcggcgggactcctcaagagatgcggacattgaaatgggaat 305
Query: 177 gcatcaggctgatgcttcagacaacttgaaagatttcttgaagaaggt 224
||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 306 gcatcaggctgatgcttcagacaacttaaaggatttcttgaagaaggt 353
Score = 99.6 bits (50), Expect = 6e-019
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 221 aggtcgatgcaattgagagtataattgcaaagctgtcaaatctattgaataagctcca 278
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 498 aggtcgatgcaattgagagtttaattgcaaagctgacaaatctattgaataagctcca 555
>gb|CW095236.1|CW095236 104_460_11001185_148_34420_075 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11001185, DNA
sequence
Length = 626
Score = 165 bits (83), Expect = 1e-038
Identities = 89/91 (97%)
Strand = Plus / Minus
Query: 327 agcaattaagcagcggatggagaaagatattgatgaagtggggaaaattgctcctcaggc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 444 agcaattaagcagcggatggagaaagatattgatgaagtggggaaaattgctcgtcaggc 385
Query: 387 aaagacaaaagttgatgaactggaaagagat 417
|||||||||||||||||||||||||| ||||
Sbjct: 384 aaagacaaaagttgatgaactggaaaaagat 354
Score = 85.7 bits (43), Expect = 9e-015
Identities = 47/49 (95%)
Strand = Plus / Minus
Query: 280 actgcaaatgaggaatccnaagnagttacaaaagcaagttccatgaaag 328
|||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 585 actgcaaatgaggaatccaaagcagttacaaaagcaagttccatgaaag 537
>gb|CW435421.1|CW435421 fsbb001f151j02k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f151j02, DNA
sequence
Length = 677
Score = 165 bits (83), Expect = 1e-038
Identities = 89/91 (97%)
Strand = Plus / Minus
Query: 327 agcaattaagcagcggatggagaaagatattgatgaagtggggaaaattgctcctcaggc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 481 agcaattaagcagcggatggagaaagatattgatgaagtggggaaaattgctcgtcaggc 422
Query: 387 aaagacaaaagttgatgaactggaaagagat 417
|||||||||||||||||||||||||| ||||
Sbjct: 421 aaagacaaaagttgatgaactggaaaaagat 391
Score = 85.7 bits (43), Expect = 9e-015
Identities = 47/49 (95%)
Strand = Plus / Minus
Query: 280 actgcaaatgaggaatccnaagnagttacaaaagcaagttccatgaaag 328
|||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 622 actgcaaatgaggaatccaaagcagttacaaaagcaagttccatgaaag 574
Score = 52.0 bits (26), Expect = 1e-004
Identities = 33/34 (97%), Gaps = 1/34 (2%)
Strand = Plus / Minus
Query: 426 gaataggcaaaaacctggatgtggaaagggttct 459
||||||||||||||||||||| ||||||||||||
Sbjct: 41 gaataggcaaaaacctggatg-ggaaagggttct 9
>gb|CL174774.1|CL174774 104_379_10891892_148_31768_260 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10891892, DNA
sequence
Length = 644
Score = 60.0 bits (30), Expect = 5e-007
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 49 ggcctccgctctcctcgccgcccgcccgcc 78
||||||||||||||||||||||||||||||
Sbjct: 440 ggcctccgctctcctcgccgcccgcccgcc 469
Score = 56.0 bits (28), Expect = 8e-006
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 91 ctcgccgccatgaacaacctcctcacgg 118
||||||||||||||||||||||||||||
Sbjct: 493 ctcgccgccatgaacaacctcctcacgg 520
>gb|CW151313.1|CW151313 104_552_11143870_116_36322_095 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11143870, DNA
sequence
Length = 681
Score = 60.0 bits (30), Expect = 5e-007
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 49 ggcctccgctctcctcgccgcccgcccgcc 78
||||||||||||||||||||||||||||||
Sbjct: 560 ggcctccgctctcctcgccgcccgcccgcc 589
Score = 56.0 bits (28), Expect = 8e-006
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 91 ctcgccgccatgaacaacctcctcacgg 118
||||||||||||||||||||||||||||
Sbjct: 613 ctcgccgccatgaacaacctcctcacgg 640
>gb|CW435420.1|CW435420 fsbb001f151j02f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f151j02, DNA
sequence
Length = 551
Score = 60.0 bits (30), Expect = 5e-007
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 49 ggcctccgctctcctcgccgcccgcccgcc 78
||||||||||||||||||||||||||||||
Sbjct: 196 ggcctccgctctcctcgccgcccgcccgcc 225
Score = 56.0 bits (28), Expect = 8e-006
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 91 ctcgccgccatgaacaacctcctcacgg 118
||||||||||||||||||||||||||||
Sbjct: 249 ctcgccgccatgaacaacctcctcacgg 276
>gb|CL174773.1|CL174773 104_379_10891892_116_31769_260 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10891892, DNA
sequence
Length = 720
Score = 56.0 bits (28), Expect = 8e-006
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 91 ctcgccgccatgaacaacctcctcacgg 118
||||||||||||||||||||||||||||
Sbjct: 714 ctcgccgccatgaacaacctcctcacgg 687
>gb|CW151314.1|CW151314 104_552_11143870_148_36321_095 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11143870, DNA
sequence
Length = 610
Score = 56.0 bits (28), Expect = 8e-006
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 91 ctcgccgccatgaacaacctcctcacgg 118
||||||||||||||||||||||||||||
Sbjct: 572 ctcgccgccatgaacaacctcctcacgg 545
>gb|CD219658.1|CD219658 CCC1_58_B12.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_58_B12_A007 3', mRNA sequence
Length = 328
Score = 52.0 bits (26), Expect = 1e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 967 gtggtcattgtcgtcgcagtcatccagccatggaagaagggc 1008
||||||||||| ||||| |||||||| |||||||| ||||||
Sbjct: 2 gtggtcattgttgtcgcggtcatccacccatggaaaaagggc 43
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 314,284
Number of Sequences: 832831
Number of extensions: 314284
Number of successful extensions: 87463
Number of sequences better than 0.5: 21
Number of HSP's better than 0.5 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87369
Number of HSP's gapped (non-prelim): 93
length of query: 1189
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1169
effective length of database: 474,703,049
effective search space: 554927864281
effective search space used: 554927864281
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)