BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2969966.2.1
(1029 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW425068.1|CW425068 fsbb001f135m01k0 Sorghum methylation... 718 0.0
gb|BF480910.1|BF480910 FM1_14_H03.b1_A003 Floral-Induced Me... 636 0.0
gb|CW425067.1|CW425067 fsbb001f135m01f0 Sorghum methylation... 555 e-156
gb|BM324094.1|BM324094 PIC1_24_B06.b1_A002 Pathogen-infecte... 505 e-141
gb|CW154630.1|CW154630 104_556_11145702_116_36351_017 Sorgh... 274 2e-071
gb|CW187057.1|CW187057 104_605_11166892_148_36719_012 Sorgh... 274 2e-071
gb|CW241828.1|CW241828 104_701_11218990_148_37557_093 Sorgh... 274 2e-071
gb|CW154631.1|CW154631 104_556_11145702_148_36352_017 Sorgh... 228 8e-058
gb|CW187056.1|CW187056 104_605_11166892_116_36720_012 Sorgh... 228 8e-058
gb|CW064113.1|CW064113 104_310_10522384_115_30146 Sorghum m... 131 1e-028
gb|BF588107.1|BF588107 FM1_37_G09.b1_A003 Floral-Induced Me... 84 3e-014
gb|BF704862.1|BF704862 FM1_52_D11.b1_A003 Floral-Induced Me... 84 3e-014
gb|BI211291.1|BI211291 IP1_58_G11.b1_A002 Immature pannicle... 60 4e-007
gb|CW884458.1|CW884458 Sorghum CISP Intron:I14_E12_F_SRSC4_... 56 7e-006
gb|CW883824.1|CW883824 Sorghum CISP Intron:I25_E12_F_SRSC4_... 54 3e-005
gb|CC059543.1|CC059543 ii24f11.b1 WGS-SbicolorF (DH5a methy... 52 1e-004
gb|BZ343273.1|BZ343273 ho53a08.b1 WGS-SbicolorF (JM107 adap... 44 0.025
gb|CL164957.1|CL164957 104_359_10808265_114_31816_249 Sorgh... 44 0.025
gb|CL164958.1|CL164958 104_359_10808265_116_31817_249 Sorgh... 44 0.025
gb|BE365314.1|BE365314 PI1_26_G10.b1_A002 Pathogen induced ... 44 0.025
gb|BE600981.1|BE600981 PI1_95_E03.b1_A002 Pathogen induced ... 44 0.025
gb|BF176910.1|BF176910 EM1_4_C02.b1_A002 Embryo 1 (EM1) Sor... 44 0.025
gb|BG158321.1|BG158321 EM1_12_E06.b1_A002 Embryo 1 (EM1) So... 44 0.025
gb|BG357738.1|BG357738 OV2_29_G02.b1_A002 Ovary 2 (OV2) Sor... 44 0.025
gb|BG558795.1|BG558795 RHIZ2_56_F08.b1_A003 Rhizome2 (RHIZ2... 44 0.025
gb|BG560027.1|BG560027 RHIZ2_68_E09.b1_A003 Rhizome2 (RHIZ2... 44 0.025
gb|BI076072.1|BI076072 IP1_25_C11.b1_A002 Immature pannicle... 44 0.025
gb|BI098203.1|BI098203 IP1_29_D05.b1_A002 Immature pannicle... 44 0.025
gb|BM324748.1|BM324748 PIC1_35_B08.b1_A002 Pathogen-infecte... 44 0.025
>gb|CW425068.1|CW425068 fsbb001f135m01k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f135m01, DNA
sequence
Length = 720
Score = 718 bits (362), Expect = 0.0
Identities = 413/430 (96%)
Strand = Plus / Minus
Query: 597 gatgacagcaatgctttgatgtggctgagaggagtaaccggtgaagggggctttcattct 656
||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||
Sbjct: 647 gatgacagcaatgctttgatgtggctgagaggagttgctggtgaagggggctttcagtct 588
Query: 657 tcgaacttccagtcacctggtataggttcctggggacaacagagactccatccatcctta 716
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 587 ttgaacttccagtcacctggtataggttcctggggacaacagaggctccatccatcctta 528
Query: 717 cttagcaatgaccatgatcagtatcaagcagtggttgctgccgcagctgcctcccagtcc 776
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 527 cttagcaatgatcatgatcagtatcaagcagtggttgctgcagcagctgcctcccagtcc 468
Query: 777 ggtggttatctgaagcagcaattcctacaccttcaacaacctatgcagtccccacaggag 836
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 467 ggtggttatctgaagcagcaattcctacaccttcaacagcctatgcaatccccacaggag 408
Query: 837 cagtgcaatctcaatccgctgttgcagcaacaaatactacagcaagcgagccaacagcag 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 cagtgcaatctcaatccgctgttgcagcaacaaatactacagcaagcgagccaacagcag 348
Query: 897 atggttagttctgatgctcaaaatattcagtccgtgctcaacccaggtgctattcagcag 956
||||||||| ||||||||||||| |||||||||||||||| |||| |||||||||||||
Sbjct: 347 atggttagtcctgatgctcaaaacattcagtccgtgctcagcccaaatgctattcagcag 288
Query: 957 cagctccaccaactccagcagatgcagcatactcataatgaccagaagcaaaagattcaa 1016
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 287 cagctccaccaactccagcagatgcagcatgctcataatgaccagaagcagaagattcaa 228
Query: 1017 ccagatcaac 1026
||||||||||
Sbjct: 227 ccagatcaac 218
>gb|BF480910.1|BF480910 FM1_14_H03.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 377
Score = 636 bits (321), Expect = 0.0
Identities = 357/369 (96%)
Strand = Plus / Plus
Query: 404 tgctgacccagtgcgttggcctagttcctattggagatcagtgaaggttggttgggatga 463
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 9 tgctgacccagtgcgttggcctagctcctattggagatcagtgaaggttggttgggatga 68
Query: 464 atcaaccgcaggagaaaggccacctagagtttctctgtgggaaattgagccactgacaac 523
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 atcaacagcaggggaaaggccacctagagtttctctgtgggaaattgagccactgacaac 128
Query: 524 ctttcctatgtatccatccctgttcccactgcgagttaagcatccttggtattcaggact 583
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 129 ctttcctatgtatccatccctgttcccactgcgagttaagcatccttggtattcaggagt 188
Query: 584 tgctgctcttcatgatgacagcaatgctttgatgtggctgagaggagtaaccggtgaagg 643
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 189 tgctgctcttcatgatgacagcaatgctttgatgtggctgagaggagttgctggtgaagg 248
Query: 644 gggctttcattcttcgaacttccagtcacctggtataggttcctggggacaacagagact 703
||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 249 gggctttcagtctttgaacttccagtcacctggtataggttcctggggacagcagaggct 308
Query: 704 ccatccatccttacttagcaatgaccatgatcagtatcaagcagtggttgctgccgcagc 763
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 309 ccatccatccttacttagcaatgatcatgatcagtatcaagcagtggttgctgccgcagc 368
Query: 764 tgcctccca 772
|||||||||
Sbjct: 369 tgcctccca 377
>gb|CW425067.1|CW425067 fsbb001f135m01f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f135m01, DNA
sequence
Length = 708
Score = 555 bits (280), Expect = e-156
Identities = 316/328 (96%)
Strand = Plus / Plus
Query: 597 gatgacagcaatgctttgatgtggctgagaggagtaaccggtgaagggggctttcattct 656
||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||
Sbjct: 381 gatgacagcaatgctttgatgtggctgagaggagttgctggtgaagggggctttcagtct 440
Query: 657 tcgaacttccagtcacctggtataggttcctggggacaacagagactccatccatcctta 716
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 ttgaacttccagtcacctggtataggttcctggggacaacagaggctccatccatcctta 500
Query: 717 cttagcaatgaccatgatcagtatcaagcagtggttgctgccgcagctgcctcccagtcc 776
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 cttagcaatgatcatgatcagtatcaagcagtggttgctgcagcagctgcctcccagtcc 560
Query: 777 ggtggttatctgaagcagcaattcctacaccttcaacaacctatgcagtccccacaggag 836
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 561 ggtggttatctgaagcagcaattcctacaccttcaacagcctatgcaatccccacaggag 620
Query: 837 cagtgcaatctcaatccgctgttgcagcaacaaatactacagcaagcgagccaacagcag 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagtgcaatctcaatccgctgttgcagcaacaaatactacagcaagcgagccaacagcag 680
Query: 897 atggttagttctgatgctcaaaatattc 924
||||||||| ||||||||||||| ||||
Sbjct: 681 atggttagtcctgatgctcaaaacattc 708
>gb|BM324094.1|BM324094 PIC1_24_B06.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 564
Score = 505 bits (255), Expect = e-141
Identities = 285/295 (96%)
Strand = Plus / Plus
Query: 732 gatcagtatcaagcagtggttgctgccgcagctgcctcccagtccggtggttatctgaag 791
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 9 gatcagtatcaagcagtggttgctgcagcagctgcctcccagtccggtggttatctgaag 68
Query: 792 cagcaattcctacaccttcaacaacctatgcagtccccacaggagcagtgcaatctcaat 851
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 69 cagcaattcctacaccttcaacagcctatgcaatccccacaggagcagtgcaatctcaat 128
Query: 852 ccgctgttgcagcaacaaatactacagcaagcgagccaacagcagatggttagttctgat 911
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 129 ccgctgttgcagcaacaaatactacagcaagcgagccaacagcagatggttagtcctgat 188
Query: 912 gctcaaaatattcagtccgtgctcaacccaggtgctattcagcagcagctccaccaactc 971
|||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 189 gctcaaaacattcagtccgtgctcagcccaaatgctattcagcagcagctccaccaactc 248
Query: 972 cagcagatgcagcatactcataatgaccagaagcaaaagattcaaccagatcaac 1026
||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 249 cagcagatgcagcatgctcataatgaccagaagcagaagattcaaccagatcaac 303
>gb|CW154630.1|CW154630 104_556_11145702_116_36351_017 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11145702, DNA
sequence
Length = 724
Score = 274 bits (138), Expect = 2e-071
Identities = 147/150 (98%)
Strand = Plus / Minus
Query: 448 aggttggttgggatgaatcaaccgcaggagaaaggccacctagagtttctctgtgggaaa 507
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 635 aggttggttgggatgaatcaacagcaggggaaaggccacctagagtttctctgtgggaaa 576
Query: 508 ttgagccactgacaacctttcctatgtatccatccctgttcccactgcgagttaagcatc 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ttgagccactgacaacctttcctatgtatccatccctgttcccactgcgagttaagcatc 516
Query: 568 cttggtattcaggacttgctgctcttcatg 597
|||||||||||||| |||||||||||||||
Sbjct: 515 cttggtattcaggagttgctgctcttcatg 486
>gb|CW187057.1|CW187057 104_605_11166892_148_36719_012 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11166892, DNA
sequence
Length = 738
Score = 274 bits (138), Expect = 2e-071
Identities = 147/150 (98%)
Strand = Plus / Minus
Query: 448 aggttggttgggatgaatcaaccgcaggagaaaggccacctagagtttctctgtgggaaa 507
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 534 aggttggttgggatgaatcaacagcaggggaaaggccacctagagtttctctgtgggaaa 475
Query: 508 ttgagccactgacaacctttcctatgtatccatccctgttcccactgcgagttaagcatc 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ttgagccactgacaacctttcctatgtatccatccctgttcccactgcgagttaagcatc 415
Query: 568 cttggtattcaggacttgctgctcttcatg 597
|||||||||||||| |||||||||||||||
Sbjct: 414 cttggtattcaggagttgctgctcttcatg 385
>gb|CW241828.1|CW241828 104_701_11218990_148_37557_093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11218990, DNA
sequence
Length = 722
Score = 274 bits (138), Expect = 2e-071
Identities = 147/150 (98%)
Strand = Plus / Minus
Query: 448 aggttggttgggatgaatcaaccgcaggagaaaggccacctagagtttctctgtgggaaa 507
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 356 aggttggttgggatgaatcaacagcaggggaaaggccacctagagtttctctgtgggaaa 297
Query: 508 ttgagccactgacaacctttcctatgtatccatccctgttcccactgcgagttaagcatc 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ttgagccactgacaacctttcctatgtatccatccctgttcccactgcgagttaagcatc 237
Query: 568 cttggtattcaggacttgctgctcttcatg 597
|||||||||||||| |||||||||||||||
Sbjct: 236 cttggtattcaggagttgctgctcttcatg 207
>gb|CW154631.1|CW154631 104_556_11145702_148_36352_017 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11145702, DNA
sequence
Length = 696
Score = 228 bits (115), Expect = 8e-058
Identities = 124/127 (97%)
Strand = Plus / Plus
Query: 249 agggcaagtccaacagaatttgttatacccctttcgaaatacatcaaggctgtttttcac 308
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35 agggcaagtccatcagaatttgttatacccctttcgaaatacatcaaggctgtttttcac 94
Query: 309 acgcggatatcagttgggatgcgattcaggatgttatttgagactgaggaatcaagtgtc 368
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 95 acgcggatatcagttgggatgcgattcaggatgttgtttgagactgaggaatctagtgtc 154
Query: 369 cgcaggt 375
|||||||
Sbjct: 155 cgcaggt 161
Score = 155 bits (78), Expect = 1e-035
Identities = 81/82 (98%)
Strand = Plus / Plus
Query: 370 gcaggtacatggggacaataacagaagtgagtgatgctgacccagtgcgttggcctagtt 429
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 280 gcaggtacatggggacaataacagaagtgagtgatgctgacccagtgcgttggcctagct 339
Query: 430 cctattggagatcagtgaaggt 451
||||||||||||||||||||||
Sbjct: 340 cctattggagatcagtgaaggt 361
>gb|CW187056.1|CW187056 104_605_11166892_116_36720_012 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11166892, DNA
sequence
Length = 650
Score = 228 bits (115), Expect = 8e-058
Identities = 124/127 (97%)
Strand = Plus / Plus
Query: 249 agggcaagtccaacagaatttgttatacccctttcgaaatacatcaaggctgtttttcac 308
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 agggcaagtccatcagaatttgttatacccctttcgaaatacatcaaggctgtttttcac 142
Query: 309 acgcggatatcagttgggatgcgattcaggatgttatttgagactgaggaatcaagtgtc 368
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 143 acgcggatatcagttgggatgcgattcaggatgttgtttgagactgaggaatctagtgtc 202
Query: 369 cgcaggt 375
|||||||
Sbjct: 203 cgcaggt 209
Score = 155 bits (78), Expect = 1e-035
Identities = 81/82 (98%)
Strand = Plus / Plus
Query: 370 gcaggtacatggggacaataacagaagtgagtgatgctgacccagtgcgttggcctagtt 429
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 328 gcaggtacatggggacaataacagaagtgagtgatgctgacccagtgcgttggcctagct 387
Query: 430 cctattggagatcagtgaaggt 451
||||||||||||||||||||||
Sbjct: 388 cctattggagatcagtgaaggt 409
>gb|CW064113.1|CW064113 104_310_10522384_115_30146 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10522384,
DNA sequence
Length = 585
Score = 131 bits (66), Expect = 1e-028
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 21 actggctggagtgtgtttgtcagtgctaagagacttgttgctggagattctgtgctattc 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 actggctggagtgtgtttgtcagtgctaagagacttgttgctggagattctgtgctattc 18
Query: 81 atatgg 86
||||||
Sbjct: 17 atatgg 12
>gb|BF588107.1|BF588107 FM1_37_G09.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 503
Score = 83.8 bits (42), Expect = 3e-014
Identities = 207/262 (79%)
Strand = Plus / Plus
Query: 132 ccacagactgtgatgccctcttctgttctttcgagtgacagcatgcacatcggactcctt 191
||||| ||||| ||||| || || || ||||| ||||| |||||||| || || || |||
Sbjct: 84 ccacaaactgtcatgccatcatcagtactttctagtgatagcatgcatattggtctgctt 143
Query: 192 gcagcagcagctcatgctgctgcaacaaacagccgcttcacaattttctataatcctagg 251
|| ||||||||||||||||| ||||||| ||||| || || |||||||||||||| ||
Sbjct: 144 gctgcagcagctcatgctgcatcaacaaatagccggtttactattttctataatccaaga 203
Query: 252 gcaagtccaacagaatttgttatacccctttcgaaatacatcaaggctgtttttcacacg 311
||||| || |||||||| |||||| | | || ||| |||| ||||| | || ||
Sbjct: 204 gcaagcccttgtgaatttgtcatacccatggctaagtacgtcaaagctgtgtaccatacc 263
Query: 312 cggatatcagttgggatgcgattcaggatgttatttgagactgaggaatcaagtgtccgc 371
|| ||||| || || ||||| ||| ||||| | |||||||| |||||||| ||||| |
Sbjct: 264 cgtatatctgtgggcatgcgtttccggatgctttttgagacagaggaatccagtgtaagg 323
Query: 372 aggtacatggggacaataacag 393
| |||||||||||||| ||||
Sbjct: 324 cgttacatggggacaattacag 345
>gb|BF704862.1|BF704862 FM1_52_D11.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 512
Score = 83.8 bits (42), Expect = 3e-014
Identities = 207/262 (79%)
Strand = Plus / Plus
Query: 132 ccacagactgtgatgccctcttctgttctttcgagtgacagcatgcacatcggactcctt 191
||||| ||||| ||||| || || || ||||| ||||| |||||||| || || || |||
Sbjct: 84 ccacaaactgtcatgccatcatcagtactttctagtgatagcatgcatattggtctgctt 143
Query: 192 gcagcagcagctcatgctgctgcaacaaacagccgcttcacaattttctataatcctagg 251
|| ||||||||||||||||| ||||||| ||||| || || |||||||||||||| ||
Sbjct: 144 gctgcagcagctcatgctgcatcaacaaatagccggtttactattttctataatccaaga 203
Query: 252 gcaagtccaacagaatttgttatacccctttcgaaatacatcaaggctgtttttcacacg 311
||||| || |||||||| |||||| | | || ||| |||| ||||| | || ||
Sbjct: 204 gcaagcccttgtgaatttgtcatacccatggctaagtacgtcaaagctgtgtaccatacc 263
Query: 312 cggatatcagttgggatgcgattcaggatgttatttgagactgaggaatcaagtgtccgc 371
|| ||||| || || ||||| ||| ||||| | |||||||| |||||||| ||||| |
Sbjct: 264 cgtatatctgtgggcatgcgtttccggatgctttttgagacagaggaatccagtgtaagg 323
Query: 372 aggtacatggggacaataacag 393
| |||||||||||||| ||||
Sbjct: 324 cgttacatggggacaattacag 345
>gb|BI211291.1|BI211291 IP1_58_G11.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 153
Score = 60.0 bits (30), Expect = 4e-007
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 195 gcagcagctcatgctgctgcaacaaacagccgcttcacaattttctataatcctagggca 254
||||||||||||||||| ||||||| ||||| || || |||||||||||||| || |||
Sbjct: 1 gcagcagctcatgctgcatcaacaaatagccggtttactattttctataatccaagagca 60
Query: 255 ag 256
||
Sbjct: 61 ag 62
>gb|CW884458.1|CW884458 Sorghum CISP Intron:I14_E12_F_SRSC4_027_SORG_IS18B IS18 Sorghum
bicolor genomic, DNA sequence
Length = 478
Score = 56.0 bits (28), Expect = 7e-006
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 597 gatgacagcaatgctttgatgtggctga 624
||||||||||||||||||||||||||||
Sbjct: 451 gatgacagcaatgctttgatgtggctga 478
>gb|CW883824.1|CW883824 Sorghum CISP Intron:I25_E12_F_SRSC4_027_SORG_BTXXB BTXX Sorghum
bicolor genomic, DNA sequence
Length = 508
Score = 54.0 bits (27), Expect = 3e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 597 gatgacagcaatgctttgatgtggctg 623
|||||||||||||||||||||||||||
Sbjct: 482 gatgacagcaatgctttgatgtggctg 508
>gb|CC059543.1|CC059543 ii24f11.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ii24f11, DNA sequence
Length = 722
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 27 tggagtgtgtttgtcagtgctaagagacttgttgctgg 64
|||||||| ||||| ||||| |||||||||||||||||
Sbjct: 69 tggagtgtctttgtaagtgcaaagagacttgttgctgg 32
>gb|BZ343273.1|BZ343273 ho53a08.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ho53a08 5', DNA sequence
Length = 604
Score = 44.1 bits (22), Expect = 0.025
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 448 aggttggttgggatgaatcaac 469
||||||||||||||||||||||
Sbjct: 157 aggttggttgggatgaatcaac 136
>gb|CL164957.1|CL164957 104_359_10808265_114_31816_249 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10808265, DNA
sequence
Length = 739
Score = 44.1 bits (22), Expect = 0.025
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 327 atgcgattcaggatgttatttgagactgaggaat 360
||||||||| ||||| | ||||||||||||||||
Sbjct: 555 atgcgattccggatgatgtttgagactgaggaat 588
Score = 42.1 bits (21), Expect = 0.10
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 150 tcttctgttctttcgagtgacagcatgcacatcggactccttgcagcagcagctcatgct 209
||||| || ||||| |||||||| |||||||| || | ||||| ||||| || ||||||
Sbjct: 272 tcttcagtactttcaagtgacagtatgcacataggggtgcttgctgcagcggcccatgct 331
Query: 210 gctgc 214
|||||
Sbjct: 332 gctgc 336
>gb|CL164958.1|CL164958 104_359_10808265_116_31817_249 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10808265, DNA
sequence
Length = 730
Score = 44.1 bits (22), Expect = 0.025
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 327 atgcgattcaggatgttatttgagactgaggaat 360
||||||||| ||||| | ||||||||||||||||
Sbjct: 192 atgcgattccggatgatgtttgagactgaggaat 159
Score = 42.1 bits (21), Expect = 0.10
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 150 tcttctgttctttcgagtgacagcatgcacatcggactccttgcagcagcagctcatgct 209
||||| || ||||| |||||||| |||||||| || | ||||| ||||| || ||||||
Sbjct: 475 tcttcagtactttcaagtgacagtatgcacataggggtgcttgctgcagcggcccatgct 416
Query: 210 gctgc 214
|||||
Sbjct: 415 gctgc 411
>gb|BE365314.1|BE365314 PI1_26_G10.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 544
Score = 44.1 bits (22), Expect = 0.025
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 23 tggctggagtgtgtttgtcagtgctaagagacttgttgctgg 64
|||||||||||| ||||| ||||| ||| | |||||||||||
Sbjct: 460 tggctggagtgtttttgttagtgcaaagcgtcttgttgctgg 501
>gb|BE600981.1|BE600981 PI1_95_E03.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 557
Score = 44.1 bits (22), Expect = 0.025
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 23 tggctggagtgtgtttgtcagtgctaagagacttgttgctgg 64
|||||||||||| ||||| ||||| ||| | |||||||||||
Sbjct: 460 tggctggagtgtttttgttagtgcaaagcgtcttgttgctgg 501
>gb|BF176910.1|BF176910 EM1_4_C02.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 469
Score = 44.1 bits (22), Expect = 0.025
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 23 tggctggagtgtgtttgtcagtgctaagagacttgttgctgg 64
|||||||||||| ||||| ||||| ||| | |||||||||||
Sbjct: 17 tggctggagtgtttttgttagtgcaaagcgtcttgttgctgg 58
>gb|BG158321.1|BG158321 EM1_12_E06.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 512
Score = 44.1 bits (22), Expect = 0.025
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 23 tggctggagtgtgtttgtcagtgctaagagacttgttgctgg 64
|||||||||||| ||||| ||||| ||| | |||||||||||
Sbjct: 302 tggctggagtgtttttgttagtgcaaagcgtcttgttgctgg 343
>gb|BG357738.1|BG357738 OV2_29_G02.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 530
Score = 44.1 bits (22), Expect = 0.025
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 23 tggctggagtgtgtttgtcagtgctaagagacttgttgctgg 64
|||||||||||| ||||| ||||| ||| | |||||||||||
Sbjct: 435 tggctggagtgtttttgttagtgcaaagcgtcttgttgctgg 476
>gb|BG558795.1|BG558795 RHIZ2_56_F08.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 440
Score = 44.1 bits (22), Expect = 0.025
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 23 tggctggagtgtgtttgtcagtgctaagagacttgttgctgg 64
|||||||||||| ||||| ||||| ||| | |||||||||||
Sbjct: 213 tggctggagtgtttttgttagtgccaagcgtcttgttgctgg 254
>gb|BG560027.1|BG560027 RHIZ2_68_E09.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA,
mRNA sequence
Length = 562
Score = 44.1 bits (22), Expect = 0.025
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 23 tggctggagtgtgtttgtcagtgctaagagacttgttgctgg 64
|||||||||||| ||||| ||||| ||| | |||||||||||
Sbjct: 41 tggctggagtgtttttgttagtgccaagcgtcttgttgctgg 82
>gb|BI076072.1|BI076072 IP1_25_C11.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 650
Score = 44.1 bits (22), Expect = 0.025
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 23 tggctggagtgtgtttgtcagtgctaagagacttgttgctgg 64
|||||||||||| ||||| ||||| ||| | |||||||||||
Sbjct: 590 tggctggagtgtttttgttagtgcaaagcgtcttgttgctgg 631
>gb|BI098203.1|BI098203 IP1_29_D05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 656
Score = 44.1 bits (22), Expect = 0.025
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 23 tggctggagtgtgtttgtcagtgctaagagacttgttgctgg 64
|||||||||||| ||||| ||||| ||| | |||||||||||
Sbjct: 439 tggctggagtgtttttgttagtgcaaagcgtcttgttgctgg 480
>gb|BM324748.1|BM324748 PIC1_35_B08.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 640
Score = 44.1 bits (22), Expect = 0.025
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 23 tggctggagtgtgtttgtcagtgctaagagacttgttgctgg 64
|||||||||||| ||||| ||||| ||| | |||||||||||
Sbjct: 452 tggctggagtgtttttgttagtgcaaagcgtcttgttgctgg 493
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 320,396
Number of Sequences: 832831
Number of extensions: 320396
Number of successful extensions: 80504
Number of sequences better than 0.5: 29
Number of HSP's better than 0.5 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80463
Number of HSP's gapped (non-prelim): 41
length of query: 1029
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1009
effective length of database: 474,703,049
effective search space: 478975376441
effective search space used: 478975376441
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)