BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950292.2.1
(1205 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF422073.1|BF422073 FM1_12_E11.g1_A003 Floral-Induced Me... 870 0.0
gb|CN150108.1|CN150108 WOUND1_67_A11.b1_A002 Wounded leaves... 765 0.0
gb|BM328012.1|BM328012 PIC1_20_B05.g1_A002 Pathogen-infecte... 733 0.0
gb|CF758133.1|CF758133 DSAF1_27_G11.g1_A011 Drought-stresse... 670 0.0
gb|CB924861.1|CB924861 ABA1_28_E12.g1_A012 Abscisic acid-tr... 666 0.0
gb|BF422160.1|BF422160 FM1_12_E11.b1_A003 Floral-Induced Me... 632 e-179
gb|BM323509.1|BM323509 PIC1_20_B05.b1_A002 Pathogen-infecte... 613 e-173
gb|CD228164.1|CD228164 CCC1_6_C03.b1_A007 Callus culture/ce... 545 e-153
gb|CD222095.1|CD222095 CCC1_1_D01.g1_A007 Callus culture/ce... 537 e-151
gb|CD221963.1|CD221963 CCC1_1_D01.b1_A007 Callus culture/ce... 535 e-150
gb|CB924833.1|CB924833 ABA1_28_E12.b1_A012 Abscisic acid-tr... 515 e-144
gb|CD228280.1|CD228280 CCC1_6_C03.g1_A007 Callus culture/ce... 502 e-140
gb|CL167631.1|CL167631 104_364_10810213_114_31802_277 Sorgh... 375 e-102
gb|CW033804.1|CW033804 104_263_10502164_115_30360 Sorghum m... 375 e-102
gb|CW090211.1|CW090211 104_436_10949152_116_32609_064 Sorgh... 375 e-102
gb|CW451463.1|CW451463 fsbb001f191i20k0 Sorghum methylation... 375 e-102
gb|CW154558.1|CW154558 104_556_11145663_148_36348_052 Sorgh... 165 1e-038
gb|CW883795.1|CW883795 Sorghum CISP Intron:I27_G11_F_SRSC9_... 139 7e-031
gb|CW884429.1|CW884429 Sorghum CISP Intron:I27_C11_F_SRSC9_... 139 7e-031
gb|CW437723.1|CW437723 fsbb001f154p17f0 Sorghum methylation... 131 2e-028
gb|CW884671.1|CW884671 Sorghum CISP Intron:I24_H11_F_SRSC9_... 123 4e-026
gb|CW883852.1|CW883852 Sorghum CISP Intron:I25_H11_F_SRSC9_... 121 2e-025
gb|CW884484.1|CW884484 Sorghum CISP Intron:I14_H11_F_SRSC9_... 121 2e-025
gb|CW200892.1|CW200892 104_626_11184284_148_36871_072 Sorgh... 100 6e-019
gb|CW437724.1|CW437724 fsbb001f154p17k0 Sorghum methylation... 100 6e-019
gb|CL167632.1|CL167632 104_364_10810213_116_31803_277 Sorgh... 90 6e-016
gb|CW451462.1|CW451462 fsbb001f191i20f0 Sorghum methylation... 88 2e-015
gb|CN150176.1|CN150176 WOUND1_67_A11.g1_A002 Wounded leaves... 88 2e-015
gb|CW386970.1|CW386970 fsbb001f071b23k0 Sorghum methylation... 48 0.002
>gb|BF422073.1|BF422073 FM1_12_E11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 731
Score = 870 bits (439), Expect = 0.0
Identities = 662/731 (90%), Gaps = 24/731 (3%)
Strand = Plus / Plus
Query: 489 aggaacctaacagccatgttgttgagcaacgcgtggagtggctctatgcatttgacgttc 548
||||||||||||||||||||||||||||||| || ||||||||||||||||| || ||||
Sbjct: 1 aggaacctaacagccatgttgttgagcaacgtgtagagtggctctatgcattcgatgttc 60
Query: 549 attgtaactcgttctttcctgcgtttgtcatcctatatgtggtgcagtattttctgtcgc 608
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 61 actgtaactcgttctttcctgcgtttgtcatcctatatgtgctgcagtattttctgtcgc 120
Query: 609 ctctattggtcgcgcatggcttctttccagctttgttatctaatctactcttcgtggtgg 668
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctctgttggtcgcacatggcttctttccagctttgttatctaatctactcttcgtggtgg 180
Query: 669 caatttcttattatcactacctgaactttctaggatatgatgttcttccatttctagata 728
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 181 cgatttcttattatcactacctgaactttctaggatatgatgttcttccatttctggaca 240
Query: 729 gaacaacattcttcctgtatccgattggtctcgtcatcatcctgtctccacttatgatac 788
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaacaacattcttcctgtacccgattggtctcgtcatcatcctgtctccacttatgatac 300
Query: 789 taatagggtttaatccgacaagatactttctaagcttgtacttcggttaaagtctacggc 848
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgatagggttcaatccgacaagatactttctaagcttgtacttcggttaaagtctacggc 360
Query: 849 tagaatgccatgtacaagcaaaaatatggtgattggcg--ataactaatggcagatctgg 906
|||||||||| |||| || ||||||||||||||||| | | | ||||||||||||||||
Sbjct: 361 tagaatgccaagtacgag-aaaaatatggtgattggtgacagagctaatggcagatctgg 419
Query: 907 atacatactctgtagtaaagcattttagatatcttgtgtgaacgggggcgagtgaagttc 966
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||
Sbjct: 420 atacatactctgtagtaaagcattttagatctcttgtgttaacgggggcgagtgaggttc 479
Query: 967 agtaaagctcggag----cattctatggatgtatcaggtgcctgtggcaaggctaacaat 1022
|| ||||||||||| |||||| ||||||||||||||||||||||| |||||| ||||
Sbjct: 480 agaaaagctcggagcattcattctttggatgtatcaggtgcctgtggc-aggctaccaat 538
Query: 1023 ggaagacatatagtcttttgattggtatcaaatatcctttttgggtgtcaatttgttgtt 1082
|| |||| | || ||||||||||||||||||||||| |||| ||||||||| |||||
Sbjct: 539 agaggacaaaaagccttttgattggtatcaaatatccctttttggtgtcaat---ttgtt 595
Query: 1083 cataatatgagctgtttgcgttactttg-------ggcccagtgaccagtgtatacttgt 1135
||||||||||| |||| | ||| |||| |||||||||| ||||||||||||||
Sbjct: 596 tataatatgagccgttttctttagtttgggccaccggcccagtgatcagtgtatacttgt 655
Query: 1136 agt-agaactgctacgtagagtctattgtactatcacatcggcatcagaattgcatcaag 1194
||| | | ||||||||| ||||||||||| |||| |||||||||||||||||| |
Sbjct: 656 agtgggtattgctacgtatagtctattgta-----acattggcatcagaattgcatcacg 710
Query: 1195 ttctaccacca 1205
|||||| ||||
Sbjct: 711 ttctactacca 721
>gb|CN150108.1|CN150108 WOUND1_67_A11.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_67_A11_A002 3', mRNA sequence
Length = 569
Score = 765 bits (386), Expect = 0.0
Identities = 519/558 (93%), Gaps = 9/558 (1%)
Strand = Plus / Plus
Query: 528 ggctctatgcatttgacgttcattgtaactcgttctttcctgcgtttgtcatcctatatg 587
||||||||||||| || | ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggctctatgcattcgatgatcactgtaactcgttctttcctgcgtttgtcatcctatatg 60
Query: 588 tggtgcagtattttctgtcgcctctattggtcgcgcatggcttctttccagctttgttat 647
|| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 61 tgctgcagtattttctgtcgcctctgttggtcgcacatggcttctttccagctttgttat 120
Query: 648 ctaatctactcttcgtggtggcaatttcttattatcactacctgaactttctaggatatg 707
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctaatctactcttcgtggtggcgatttcttattatcactacctgaactttctaggatatg 180
Query: 708 atgttcttccatttctagatagaacaacattcttcctgtatccgattggtctcgtcatca 767
|||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct: 181 atgttcttccatttctggacagaacaacattcttcctgtacccgattggtctcgtcatca 240
Query: 768 tcctgtctccacttatgatactaatagggtttaatccgacaagatactttctaagcttgt 827
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 241 tcctgtctccacttatgatactgatagggttcaatccgacaagatactttctaagcttgt 300
Query: 828 acttcggttaaagtctacggctagaatgccatgtacaagcaaaaatatggtgattggcg- 886
||||||||||||||||||||||||||||||| |||| || ||||||||||||||||| |
Sbjct: 301 acttcggttaaagtctacggctagaatgccaagtacgag-aaaaatatggtgattggtga 359
Query: 887 -ataactaatggcagatctggatacatactctgtagtaaagcattttagatatcttgtgt 945
| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 360 cagagctaatggcagatctggatacatactctgtagtaaagcattttagatctcttgtgt 419
Query: 946 gaacgggggcgagtgaagttcagtaaagctcggag----cattctatggatgtatcaggt 1001
||||||||||||||| |||||| ||||||||||| |||||| ||||||||||||||
Sbjct: 420 taacgggggcgagtgaggttcagaaaagctcggagcattcattctttggatgtatcaggt 479
Query: 1002 gcctgtggcaaggctaacaatggaagacatatagtcttttgattggtatcaaatatcctt 1061
||||||||| |||||| |||| || |||| | || ||||||||||||||||||||||| |
Sbjct: 480 gcctgtggc-aggctaccaatagaggacaga-agccttttgattggtatcaaatatccct 537
Query: 1062 tttgggtgtcaatttgtt 1079
||| ||||||||||||||
Sbjct: 538 ttttggtgtcaatttgtt 555
>gb|BM328012.1|BM328012 PIC1_20_B05.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 635
Score = 733 bits (370), Expect = 0.0
Identities = 579/642 (90%), Gaps = 25/642 (3%)
Strand = Plus / Plus
Query: 573 ttgtcatcctatatgtggtgcagtattttctgtcgcctctattggtcgcgcatggcttct 632
||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 1 ttgtcatcctatatgtgctgcagtattttctgtcgcctctgttggtcgcacatggcttct 60
Query: 633 ttccagctttgttatctaatctactcttcgtggtggcaatttcttattatcactacctga 692
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 61 ttccagctttgttatctaatctactcttcgtggtggcgatttcttattatcactacctga 120
Query: 693 actttctaggatatgatgttcttccatttctagatagaacaacattcttcctgtatccga 752
||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||
Sbjct: 121 actttctaggatatgatgttcttccatttctggacagaacaacattcttcctgtacccga 180
Query: 753 ttggtctcgtcatcatcctgtctccacttatgatactaatagggtttaatccgacaagat 812
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 181 ttggtctcgtcatcatcctgtctccacttatgatactgatagggttcaatccgacaagat 240
Query: 813 actttctaagcttgtacttcggttaaagtctacggctagaatgccatgtacaagcaaaaa 872
|||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||
Sbjct: 241 actttctaagcttgtacttcggttaaagtctacggctagaatgccaagtacgag-aaaaa 299
Query: 873 tatggtgattggcg--ataactaatggcagatctggatacatactctgtagtaaagcatt 930
|||||||||||| | | | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tatggtgattggtgacagagctaatggcagatctggatacatactctgtagtaaagcatt 359
Query: 931 ttagatatcttgtgtgaacgggggcgagtgaagttcagtaaagctcggag----cattct 986
|||||| |||||||| ||||||||||||||| |||||| ||||||||||| ||||||
Sbjct: 360 ttagatctcttgtgttaacgggggcgagtgaggttcagaaaagctcggagcattcattct 419
Query: 987 atggatgtatcaggtgcctgtggcaaggctaacaatggaagacatatagtcttttgattg 1046
||||||||||||||||||||||| |||||| |||| || |||| | || ||||||||||
Sbjct: 420 ttggatgtatcaggtgcctgtggc-aggctaccaatagaggaca-aaagccttttgattg 477
Query: 1047 gtatcaaatatcctttttgggtgtcaatttgttgttcataatatgagctgtttgcgttac 1106
||||||||||||| |||| ||||||||| ||||| ||||||||||| |||| | |||
Sbjct: 478 gtatcaaatatccctttttggtgtcaat---ttgtttataatatgagccgttttctttag 534
Query: 1107 tttg-------ggcccagtgaccagtgtatacttgtagt-agaactgctacgtagagtct 1158
|||| |||||||||| ||||||||||||||||| | | ||||||||| |||||
Sbjct: 535 tttgggccaccggcccagtgatcagtgtatacttgtagtgggtattgctacgtatagtct 594
Query: 1159 attgtactatcacatcggcatcagaattgcatcaagttctac 1200
|||||| |||| |||||||||||||||||| |||||||
Sbjct: 595 attgta-----acattggcatcagaattgcatcacgttctac 631
>gb|CF758133.1|CF758133 DSAF1_27_G11.g1_A011 Drought-stressed after flowering Sorghum bicolor
cDNA clone DSAF1_27_G11_A011 3', mRNA sequence
Length = 602
Score = 670 bits (338), Expect = 0.0
Identities = 544/606 (89%), Gaps = 25/606 (4%)
Strand = Plus / Plus
Query: 614 ttggtcgcgcatggcttctttccagctttgttatctaatctactcttcgtggtggcaatt 673
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 2 ttggtcgcacatggcttctttccagctttgttatctaatctactcttcgtggtggcgatt 61
Query: 674 tcttattatcactacctgaactttctaggatatgatgttcttccatttctagatagaaca 733
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 62 tcttattatcactacctgaactttctaggatatgatgttcttccatttctggacagaaca 121
Query: 734 acattcttcctgtatccgattggtctcgtcatcatcctgtctccacttatgatactaata 793
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 122 acattcttcctgtacccgattggtctcgtcatcatcctgtctccacttatgatactgata 181
Query: 794 gggtttaatccgacaagatactttctaagcttgtacttcggttaaagtctacggctagaa 853
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gggttcaatccgacaagatactttctaagcttgtacttcggttaaagtctacggctagaa 241
Query: 854 tgccatgtacaagcaaaaatatggtgattggcg--ataactaatggcagatctggataca 911
||||| |||| || ||||||||||||||||| | | | |||||||||||||||||||||
Sbjct: 242 tgccaagtacgag-aaaaatatggtgattggtgacagagctaatggcagatctggataca 300
Query: 912 tactctgtagtaaagcattttagatatcttgtgtgaacgggggcgagtgaagttcagtaa 971
||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||| ||
Sbjct: 301 tactctgtagtaaagcattttagatctcttgtgttaacgggggcgagtgaggttcagaaa 360
Query: 972 agctcggag----cattctatggatgtatcaggtgcctgtggcaaggctaacaatggaag 1027
||||||||| |||||| ||||||||||||||||||||||| |||||| |||| || |
Sbjct: 361 agctcggagcattcattctttggatgtatcaggtgcctgtggc-aggctaccaatagagg 419
Query: 1028 acatatagtcttttgattggtatcaaatatcctttttgggtgtcaatttgttgttcataa 1087
||| | || ||||||||||||||||||||||| |||| ||||||||| ||||| ||||
Sbjct: 420 aca-aaagccttttgattggtatcaaatatccctttttggtgtcaat---ttgtttataa 475
Query: 1088 tatgagctgtttgcgttactttg-------ggcccagtgaccagtgtatacttgtagt-a 1139
||||||| |||| | ||| |||| |||||||||| |||||||||||||||||
Sbjct: 476 tatgagccgttttctttagtttgggccaccggcccagtgatcagtgtatacttgtagtgg 535
Query: 1140 gaactgctacgtagagtctattgtactatcacatcggcatcagaattgcatcaagttcta 1199
| | ||||||||| ||||||||||| |||| |||||||||||||||||| ||||||
Sbjct: 536 gtattgctacgtatagtctattgta-----acattggcatcagaattgcatcacgttcta 590
Query: 1200 ccacca 1205
| ||||
Sbjct: 591 ctacca 596
>gb|CB924861.1|CB924861 ABA1_28_E12.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_28_E12_A012 5', mRNA sequence
Length = 685
Score = 666 bits (336), Expect = 0.0
Identities = 375/388 (96%)
Strand = Plus / Plus
Query: 162 acctccgccgcatcgtcaagtggcaacaaagggatattgaatacacattttggcaaatgg 221
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 296 acctccgccgcatcgtcaagtggcaacaaatggatattgaatacacattttggcaaatgg 355
Query: 222 ttcatctctgtacttcaccaaaagtagtctatcagcacaccaaatatcacaagcaaacaa 281
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 356 ttcatctctgtacttcaccaaaagtagtctatcagcacaccaagtatcacaagcaaacaa 415
Query: 282 agaaccagtgggcccgtgatgatcctgcatttgttgttattctgattcttttcctcgtgt 341
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 agaaccagtgggctcgggatgatcctgcatttgttgttattctgattcttttcctcgtgt 475
Query: 342 ttgcaacatcagcttactgtgcagcatatggagagagtgcctcacatgctgctctaacaa 401
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 476 ttgcaacatcagcttactgtgcagcgtatggagagagtgcctcacatgctgctctaacaa 535
Query: 402 tcacttcggttgtgtttctccatttcttgtttgctgggatagttttggccacactttgct 461
||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 536 tcacttcagttgtgtttctgcatttcttgtttgctgggatagttctggccacactttgct 595
Query: 462 ggttccttacaaattcttacttgagagaggaacctaacagccatgttgttgagcaacgcg 521
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 596 ggtttcttacaaattcttacttgagagaggaacctaacagccatgttgttgagcaacgtg 655
Query: 522 tggagtggctctatgcatttgacgttca 549
| ||||||||||||||||| || |||||
Sbjct: 656 tagagtggctctatgcattcgatgttca 683
Score = 83.8 bits (42), Expect = 3e-014
Identities = 74/82 (90%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 62 aggagtagctaagg-caaagggaggtggcaaagatgctgccgacgaccgcgtccaagggg 120
||||||||| |||| ||||||| | ||| ||||||||||||||||||||||| ||||||
Sbjct: 197 aggagtagccaagggcaaagggcgtcggcgaagatgctgccgacgaccgcgtc-aagggg 255
Query: 121 cgcggggcctcccgctccgccc 142
||||||||| ||||||||||||
Sbjct: 256 cgcggggccgcccgctccgccc 277
Score = 42.1 bits (21), Expect = 0.12
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 20 gggacaaggcgccggagcctcagcaatcc 48
|||||||||||||||||| |||||||||
Sbjct: 110 gggacaaggcgccggagctccagcaatcc 138
>gb|BF422160.1|BF422160 FM1_12_E11.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 638
Score = 632 bits (319), Expect = e-179
Identities = 374/392 (95%), Gaps = 4/392 (1%)
Strand = Plus / Plus
Query: 162 acctccgccgcatcgtcaagtggcaacaaagggatattgaatacacattttggcaaatgg 221
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 246 accttcgccgcatcgtcaagtggcaacaaatggatattgaatacacattttggcaaatgg 305
Query: 222 ttcatctctgtacttcaccaaaagtagt----ctatcagcacaccaaatatcacaagcaa 277
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 306 ttcatctctgtacttcaccaaaagtagtacagctatcagcacaccaagtatcacaagcaa 365
Query: 278 acaaagaaccagtgggcccgtgatgatcctgcatttgttgttattctgattcttttcctc 337
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 366 acaaagaaccagtgggctcgggatgatcctgcatttgttgttattctgattcttttcctc 425
Query: 338 gtgtttgcaacatcagcttactgtgcagcatatggagagagtgcctcacatgctgctcta 397
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 426 gtgtttgcaacatcagcttactgtgcagcgtatggagagagtgcctcacatgctgctcta 485
Query: 398 acaatcacttcggttgtgtttctccatttcttgtttgctgggatagttttggccacactt 457
||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 486 acaatcacttcagttgtgtttctgcatttcttgtttgctgggatagttctggccacactt 545
Query: 458 tgctggttccttacaaattcttacttgagagaggaacctaacagccatgttgttgagcaa 517
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tgctggtttcttacaaattcttacttgagagaggaacctaacagccatgttgttgagcaa 605
Query: 518 cgcgtggagtggctctatgcatttgacgttca 549
|| || ||||||||||||||||| || |||||
Sbjct: 606 cgtgtagagtggctctatgcattcgatgttca 637
Score = 83.8 bits (42), Expect = 3e-014
Identities = 74/82 (90%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 62 aggagtagctaagg-caaagggaggtggcaaagatgctgccgacgaccgcgtccaagggg 120
||||||||| |||| ||||||| | ||| |||||||||||||||||||||||||| |||
Sbjct: 147 aggagtagccaagggcaaagggcgtcggcgaagatgctgccgacgaccgcgtccaa-ggg 205
Query: 121 cgcggggcctcccgctccgccc 142
||||||||| ||||||||||||
Sbjct: 206 cgcggggccgcccgctccgccc 227
Score = 42.1 bits (21), Expect = 0.12
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 20 gggacaaggcgccggagcctcagcaatcc 48
|||||||||||||||||| |||||||||
Sbjct: 60 gggacaaggcgccggagctccagcaatcc 88
>gb|BM323509.1|BM323509 PIC1_20_B05.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 630
Score = 613 bits (309), Expect = e-173
Identities = 338/348 (97%)
Strand = Plus / Plus
Query: 162 acctccgccgcatcgtcaagtggcaacaaagggatattgaatacacattttggcaaatgg 221
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 283 acctccgccgcatcgtcaagtggcaacaaatggatattgaatacacattttggcaaatgg 342
Query: 222 ttcatctctgtacttcaccaaaagtagtctatcagcacaccaaatatcacaagcaaacaa 281
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 343 ttcatctctgtacttcaccaaaagtagtctatcagcacaccaagtatcacaagcaaacaa 402
Query: 282 agaaccagtgggcccgtgatgatcctgcatttgttgttattctgattcttttcctcgtgt 341
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 agaaccagtgggctcgggatgatcctgcatttgttgttattctgattcttttcctcgtgt 462
Query: 342 ttgcaacatcagcttactgtgcagcatatggagagagtgcctcacatgctgctctaacaa 401
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 463 ttgcaacatcagcttactgtgcagcgtatggagagagtgcctcacatgctgctctaacaa 522
Query: 402 tcacttcggttgtgtttctccatttcttgtttgctgggatagttttggccacactttgct 461
||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 523 tcacttcagttgtgtttctgcatttcttgtttgctgggatagttctggccacactttgct 582
Query: 462 ggttccttacaaattcttacttgagagaggaacctaacagccatgttg 509
|||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 583 ggtttcttacnaattcttacttgagagaggaacctaacagccatgttg 630
Score = 83.8 bits (42), Expect = 3e-014
Identities = 74/82 (90%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 62 aggagtagctaagg-caaagggaggtggcaaagatgctgccgacgaccgcgtccaagggg 120
||||||||| |||| ||||||| | ||| ||||||||||||||||||||||| ||||||
Sbjct: 184 aggagtagccaagggcaaagggcgtcggcgaagatgctgccgacgaccgcgtc-aagggg 242
Query: 121 cgcggggcctcccgctccgccc 142
||||||||| ||||||||||||
Sbjct: 243 cgcggggccgcccgctccgccc 264
Score = 42.1 bits (21), Expect = 0.12
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 20 gggacaaggcgccggagcctcagcaatcc 48
|||||||||||||||||| |||||||||
Sbjct: 97 gggacaaggcgccggagctccagcaatcc 125
>gb|CD228164.1|CD228164 CCC1_6_C03.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_6_C03_A007 3', mRNA sequence
Length = 514
Score = 545 bits (275), Expect = e-153
Identities = 438/487 (89%), Gaps = 19/487 (3%)
Strand = Plus / Plus
Query: 665 gtggcaatttcttattatcactacctgaactttctaggatatgatgttcttccatttcta 724
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtggcgatttcttattatcactacctgaactttctaggatatgatgttcttccatttctg 60
Query: 725 gatagaacaacattcttcctgtatccgattggtctcgtcatcatcctgtctccacttatg 784
|| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 61 gacagaacaacattcttcctgtacccgattggtctcgtcatcaccctgtctccacttatg 120
Query: 785 atactaatagggtttaatccgacaagatactttctaagcttgtacttcggttaaagtcta 844
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atactgatagggttcaatccgacaagatactttctaagcttgtacttcggttaaagtcta 180
Query: 845 cggctagaatgccatgtacaagcaaaaatatggtgattggcg--ataactaatggcagat 902
|||||||||||||| |||| || ||||||||||||||||| | | | ||||||||||||
Sbjct: 181 cggctagaatgccaagtacgag-aaaaatatggtgattggtgacagagctaatggcagat 239
Query: 903 ctggatacatactctgtagtaaagcattttagatatcttgtgtgaacgggggcgagtgaa 962
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 240 ctggatacatactctgtagtaaagcattttagatctcttgtgttaacgggggcgagtgag 299
Query: 963 gttcagtaaagctcggag----cattctatggatgtatcaggtgcctgtggcaaggctaa 1018
|||||| ||||||||||| |||||| ||||||||||||||||||||||| ||||||
Sbjct: 300 gttcagaaaagctcggagcattcattctttggatgtatcaggtgcctgtggc-aggctac 358
Query: 1019 caatggaagacatatagtcttttgattggtatcaaatatcctttttgggtgtcaatttgt 1078
|||| || |||| | || ||||||||||||||||||||||| |||| ||||||||| |
Sbjct: 359 caatagaggaca-aaagccttttgattggtatcaaatatccctttttggtgtcaat---t 414
Query: 1079 tgttcataatatgagctgtttgcgttactttg-------ggcccagtgaccagtgtatac 1131
|||| ||||||||||| |||| | ||| |||| |||||||||| ||||||||||
Sbjct: 415 tgtttataatatgagccgttttctttagtttgggccaccggcccagtgatcagtgtatac 474
Query: 1132 ttgtagt 1138
|||||||
Sbjct: 475 ttgtagt 481
>gb|CD222095.1|CD222095 CCC1_1_D01.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_1_D01_A007 5', mRNA sequence
Length = 604
Score = 537 bits (271), Expect = e-151
Identities = 304/315 (96%)
Strand = Plus / Plus
Query: 162 acctccgccgcatcgtcaagtggcaacaaagggatattgaatacacattttggcaaatgg 221
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 290 acctccgccgcatcgtcaagtggcaacaaatggatattgaatacacattttggcaaatgg 349
Query: 222 ttcatctctgtacttcaccaaaagtagtctatcagcacaccaaatatcacaagcaaacaa 281
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 350 ttcatctctgtacttcaccaaaagtagtctatcagcacaccaagtatcacaagcaaacaa 409
Query: 282 agaaccagtgggcccgtgatgatcctgcatttgttgttattctgattcttttcctcgtgt 341
||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 410 agaaccagtgggctcgggatgatcctgcatttgttggtattctgattcttttcctcgtgt 469
Query: 342 ttgcaacatcagcttactgtgcagcatatggagagagtgcctcacatgctgctctaacaa 401
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 470 ttgcaacatcagcttactgtgcagcgtatggagagagtgcctcacatgctgctctaacaa 529
Query: 402 tcacttcggttgtgtttctccatttcttgtttgctgggatagttttggccacactttgct 461
||||||| ||||||||||| |||||||||||||||||||||| | |||||||||||||||
Sbjct: 530 tcacttcagttgtgtttctgcatttcttgtttgctgggataggtctggccacactttgct 589
Query: 462 ggttccttacaaatt 476
|||| ||||||||||
Sbjct: 590 ggtttcttacaaatt 604
Score = 99.6 bits (50), Expect = 6e-019
Identities = 75/82 (91%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 62 aggagtagctaagg-caaagggaggtggcaaagatgctgccgacgaccgcgtccaagggg 120
||||||||| |||| ||||||| | ||| ||||||||||||||||||||||||||||||
Sbjct: 190 aggagtagccaagggcaaagggcgtcggcgaagatgctgccgacgaccgcgtccaagggg 249
Query: 121 cgcggggcctcccgctccgccc 142
||||||||| ||||||||||||
Sbjct: 250 cgcggggccgcccgctccgccc 271
Score = 42.1 bits (21), Expect = 0.12
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 20 gggacaaggcgccggagcctcagcaatcc 48
|||||||||||||||||| |||||||||
Sbjct: 103 gggacaaggcgccggagctccagcaatcc 131
>gb|CD221963.1|CD221963 CCC1_1_D01.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_1_D01_A007 3', mRNA sequence
Length = 503
Score = 535 bits (270), Expect = e-150
Identities = 449/502 (89%), Gaps = 20/502 (3%)
Strand = Plus / Plus
Query: 677 tattatcactacctgaactttctaggatatgatgttcttccatttctagatagaacaaca 736
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 1 tattatcactacctgaactttctaggatatgatgttcttccatttctggacagaacaaca 60
Query: 737 ttcttcctgtatccgattggtctcgtcatcatcctgtctccacttatgatactaataggg 796
||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 61 ttcttcctgtacccgattggtctcgtcatcaccctgtctccacttatgatactgataggg 120
Query: 797 tttaatccgacaagatactttctaagcttgtacttcggttaaagtctacggctagaatgc 856
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttcaatccgacaagatactttctaagcttgtacttcggttaaagtctacggctagaatgc 180
Query: 857 catgtacaagcaaaaatatggtgattggcg--ataactaatggcagatctggatacatac 914
|| |||| || ||||||||||||||||| | | | ||||||||||||||||||||||||
Sbjct: 181 caagtacgag-aaaaatatggtgattggtgacagagctaatggcagatctggatacatac 239
Query: 915 tctgtagtaaagcattttagatatcttgtgtgaacgggggcgagtgaagttcagtaaagc 974
|||||||||||||||||||||| |||||||| ||||||||||||||| |||||| |||||
Sbjct: 240 tctgtagtaaagcattttagatctcttgtgttaacgggggcgagtgaggttcagaaaagc 299
Query: 975 tcggag----cattctatggatgtatcaggtgcctgtggcaaggctaacaatggaagaca 1030
|||||| |||||| ||||||||||||||||||||||| |||||| |||| || ||||
Sbjct: 300 tcggagcattcattctttggatgtatcaggtgcctgtggc-aggctaccaatagaggaca 358
Query: 1031 tatagtcttttgattggtatcaaatatcctttttgggtgtcaatttgttgttcataatat 1090
| || ||||||||||||||||||||||| |||| ||||||||| ||||| |||||||
Sbjct: 359 -aaagccttttgattggtatcaaatatccctttttggtgtcaat---ttgtttataatat 414
Query: 1091 gagctgtttgcgttactttg-------ggcccagtgaccagtgtatacttgtagt-agaa 1142
|||| |||| | ||| |||| |||||||||| ||||||||||||||||| | |
Sbjct: 415 gagccgttttctttagtttgggccaccggcccagtgatcagtgtatacttgtagtgggta 474
Query: 1143 ctgctacgtagagtctattgta 1164
||||||||| |||||||||||
Sbjct: 475 ttgctacgtatagtctattgta 496
>gb|CB924833.1|CB924833 ABA1_28_E12.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_28_E12_A012 3', mRNA sequence
Length = 605
Score = 515 bits (260), Expect = e-144
Identities = 460/520 (88%), Gaps = 25/520 (4%)
Strand = Plus / Plus
Query: 700 aggatatgatgttcttccatttctagatagaacaacattcttcctgtatccgattggtct 759
|||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct: 1 aggatatgatgttcttccatttctggacagaacaacattcttcctgtacccgattggtct 60
Query: 760 cgtcatcatcctgtctccacttatgatactaatagggtttaatccgacaagatactttct 819
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 61 cgtcatcatcctgtctccacttatgatactgatagggttcaatccgacaagatactttct 120
Query: 820 aagcttgtacttcggttaaagtctacggctagaatgccatgtacaagcaaaaatatggtg 879
||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||
Sbjct: 121 aagcttgtacttcggttaaagtctacggctagaatgccaagtacgag-aaaaatatggtg 179
Query: 880 attggcg--ataactaatggcagatctggatacatactctgtagtaaagcattttagata 937
||||| | | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 attggtgacagagctaatggcagatctggatacatactctgtagtaaagcattttagatc 239
Query: 938 tcttgtgtgaacgggggcgagtgaagttcagtaaagctcggag----cattctatggatg 993
|||||||| ||||||||||||||| |||||| ||||||||||| |||||| ||||||
Sbjct: 240 tcttgtgttaacgggggcgagtgaggttcagaaaagctcggagcattcattctttggatg 299
Query: 994 tatcaggtgcctgtggcaaggctaacaatggaagacatatagtcttttgattggtatcaa 1053
||||||||||||||||| |||||| |||| || |||| | || |||||||||||||||||
Sbjct: 300 tatcaggtgcctgtggc-aggctaccaatagaggaca-aaagccttttgattggtatcaa 357
Query: 1054 atatcctttttgggtgtcaatttgttgttcataatatgagctgtttgcgttactttg--- 1110
|||||| |||| ||||||||| ||||| ||||||||||| |||| | ||| ||||
Sbjct: 358 atatccctttttggtgtcaat---ttgtttataatatgagccgttttctttagtttgggc 414
Query: 1111 ----ggcccagtgaccagtgtatacttgtagt-agaactgctacgtagagtctattgtac 1165
|||||||||| ||||||||||||||||| | | ||||||||| |||||||||||
Sbjct: 415 caccggcccagtgatcagtgtatacttgtagtgggtattgctacgtatagtctattgta- 473
Query: 1166 tatcacatcggcatcagaattgcatcaagttctaccacca 1205
|||| |||||||||||||||||| ||||||| ||||
Sbjct: 474 ----acattggcatcagaattgcatcacgttctactacca 509
>gb|CD228280.1|CD228280 CCC1_6_C03.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_6_C03_A007 5', mRNA sequence
Length = 565
Score = 502 bits (253), Expect = e-140
Identities = 274/281 (97%)
Strand = Plus / Plus
Query: 162 acctccgccgcatcgtcaagtggcaacaaagggatattgaatacacattttggcaaatgg 221
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 285 acctccgccgcatcgtcaagtggcaacaaatggatattgaatacacattttggcaaatgg 344
Query: 222 ttcatctctgtacttcaccaaaagtagtctatcagcacaccaaatatcacaagcaaacaa 281
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 345 ttcatctctgtacttcaccaaaagtagtctatcagcacaccaagtatcacaagcaaacaa 404
Query: 282 agaaccagtgggcccgtgatgatcctgcatttgttgttattctgattcttttcctcgtgt 341
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 agaaccagtgggctcgggatgatcctgcatttgttgttattctgattcttttcctcgtgt 464
Query: 342 ttgcaacatcagcttactgtgcagcatatggagagagtgcctcacatgctgctctaacaa 401
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 465 ttgcaacatcagcttactgtgcagcgtatggagagagtgcctcacatgctgctctaacaa 524
Query: 402 tcacttcggttgtgtttctccatttcttgtttgctgggata 442
||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 525 tcacttcagttgtgtttctgcatttcttgtttgctgggata 565
Score = 99.6 bits (50), Expect = 6e-019
Identities = 75/82 (91%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 62 aggagtagctaagg-caaagggaggtggcaaagatgctgccgacgaccgcgtccaagggg 120
||||||||| |||| ||||||| | ||| ||||||||||||||||||||||||||||||
Sbjct: 185 aggagtagccaagggcaaagggcgtcggcgaagatgctgccgacgaccgcgtccaagggg 244
Query: 121 cgcggggcctcccgctccgccc 142
||||||||| ||||||||||||
Sbjct: 245 cgcggggccgcccgctccgccc 266
Score = 42.1 bits (21), Expect = 0.12
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 20 gggacaaggcgccggagcctcagcaatcc 48
|||||||||||||||||| |||||||||
Sbjct: 98 gggacaaggcgccggagctccagcaatcc 126
>gb|CL167631.1|CL167631 104_364_10810213_114_31802_277 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810213, DNA
sequence
Length = 766
Score = 375 bits (189), Expect = e-102
Identities = 380/437 (86%), Gaps = 25/437 (5%)
Strand = Plus / Plus
Query: 783 tgatactaatagggtttaatccgacaagatactttctaagcttgtacttcggttaaagtc 842
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 tgatactgatagggttcaatccgacaagatactttctaagcttgtacttcggttaaagtc 296
Query: 843 tacggctagaatgccatgtacaagcaaaaatatggtgattggcgataa--ctaatggcag 900
|||||||||||||||| |||| || ||||||||||||||||| || | ||||||||||
Sbjct: 297 tacggctagaatgccaagtacgag-aaaaatatggtgattggtgacagagctaatggcag 355
Query: 901 atctggatacatactctgtagtaaagcattttagatatcttgtgtgaacgggggcgagtg 960
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 356 atctggatacatactctgtagtaaagcattttagatctcttgtgttaacgggggcgagtg 415
Query: 961 aagttcagtaaagctcggag----cattctatggatgtatcaggtgcctgtggcaaggct 1016
| |||||| ||||||||||| |||||| ||||||||||||||||||||||| |||||
Sbjct: 416 aggttcagaaaagctcggagcattcattctttggatgtatcaggtgcctgtggc-aggct 474
Query: 1017 aacaatggaagacatatagtcttttgattggtatcaaatatcctttttgggtgtcaattt 1076
| |||| || |||| | || ||||||||||||||||||||||| |||| |||||||||
Sbjct: 475 accaatagaggaca-aaagccttttgattggtatcaaatatccctttttggtgtcaat-- 531
Query: 1077 gttgttcataatatgagctgtttgcgttactttg-------ggcccagtgaccagtgtat 1129
||||| ||||||||||| |||| | ||| |||| |||||||||| ||||||||
Sbjct: 532 -ttgtttataatatgagccgttttctttagtttgggccaccggcccagtgatcagtgtat 590
Query: 1130 acttgtagt-agaactgctacgtagagtctattgtactatcacatcggcatcagaattgc 1188
||||||||| | | ||||||||| ||||||||||| |||| ||||||||||||||
Sbjct: 591 acttgtagtgggtattgctacgtatagtctattgta-----acattggcatcagaattgc 645
Query: 1189 atcaagttctaccacca 1205
|||| ||||||| ||||
Sbjct: 646 atcacgttctactacca 662
Score = 121 bits (61), Expect = 2e-025
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 710 gttcttccatttctagatagaacaacattcttcctgtatccgattggtctcgtcatcatc 769
|||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 86 gttcttccatttctggacagaacaacattcttcctgtacccgattggtctcgtcatcatc 145
Query: 770 ctgtctccactta 782
|||||||||||||
Sbjct: 146 ctgtctccactta 158
>gb|CW033804.1|CW033804 104_263_10502164_115_30360 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10502164, DNA
sequence
Length = 537
Score = 375 bits (189), Expect = e-102
Identities = 380/437 (86%), Gaps = 25/437 (5%)
Strand = Plus / Plus
Query: 783 tgatactaatagggtttaatccgacaagatactttctaagcttgtacttcggttaaagtc 842
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 tgatactgatagggttcaatccgacaagatactttctaagcttgtacttcggttaaagtc 132
Query: 843 tacggctagaatgccatgtacaagcaaaaatatggtgattggcgataa--ctaatggcag 900
|||||||||||||||| |||| || ||||||||||||||||| || | ||||||||||
Sbjct: 133 tacggctagaatgccaagtacgag-aaaaatatggtgattggtgacagagctaatggcag 191
Query: 901 atctggatacatactctgtagtaaagcattttagatatcttgtgtgaacgggggcgagtg 960
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 192 atctggatacatactctgtagtaaagcattttagatctcttgtgttaacgggggcgagtg 251
Query: 961 aagttcagtaaagctcggag----cattctatggatgtatcaggtgcctgtggcaaggct 1016
| |||||| ||||||||||| |||||| ||||||||||||||||||||||| |||||
Sbjct: 252 aggttcagaaaagctcggagcattcattctttggatgtatcaggtgcctgtggc-aggct 310
Query: 1017 aacaatggaagacatatagtcttttgattggtatcaaatatcctttttgggtgtcaattt 1076
| |||| || |||| | || ||||||||||||||||||||||| |||| |||||||||
Sbjct: 311 accaatagaggaca-aaagccttttgattggtatcaaatatccctttttggtgtcaat-- 367
Query: 1077 gttgttcataatatgagctgtttgcgttactttg-------ggcccagtgaccagtgtat 1129
||||| ||||||||||| |||| | ||| |||| |||||||||| ||||||||
Sbjct: 368 -ttgtttataatatgagccgttttctttagtttgggccaccggcccagtgatcagtgtat 426
Query: 1130 acttgtagt-agaactgctacgtagagtctattgtactatcacatcggcatcagaattgc 1188
||||||||| | | ||||||||| ||||||||||| |||| ||||||||||||||
Sbjct: 427 acttgtagtgggtattgctacgtatagtctattgta-----acattggcatcagaattgc 481
Query: 1189 atcaagttctaccacca 1205
|||| ||||||| ||||
Sbjct: 482 atcacgttctactacca 498
>gb|CW090211.1|CW090211 104_436_10949152_116_32609_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10949152, DNA
sequence
Length = 751
Score = 375 bits (189), Expect = e-102
Identities = 380/437 (86%), Gaps = 25/437 (5%)
Strand = Plus / Plus
Query: 783 tgatactaatagggtttaatccgacaagatactttctaagcttgtacttcggttaaagtc 842
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tgatactgatagggttcaatccgacaagatactttctaagcttgtacttcggttaaagtc 72
Query: 843 tacggctagaatgccatgtacaagcaaaaatatggtgattggcgataa--ctaatggcag 900
|||||||||||||||| |||| || ||||||||||||||||| || | ||||||||||
Sbjct: 73 tacggctagaatgccaagtacgag-aaaaatatggtgattggtgacagagctaatggcag 131
Query: 901 atctggatacatactctgtagtaaagcattttagatatcttgtgtgaacgggggcgagtg 960
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 132 atctggatacatactctgtagtaaagcattttagatctcttgtgttaacgggggcgagtg 191
Query: 961 aagttcagtaaagctcggag----cattctatggatgtatcaggtgcctgtggcaaggct 1016
| |||||| ||||||||||| |||||| ||||||||||||||||||||||| |||||
Sbjct: 192 aggttcagaaaagctcggagcattcattctttggatgtatcaggtgcctgtggc-aggct 250
Query: 1017 aacaatggaagacatatagtcttttgattggtatcaaatatcctttttgggtgtcaattt 1076
| |||| || |||| | || ||||||||||||||||||||||| |||| |||||||||
Sbjct: 251 accaatagaggaca-aaagccttttgattggtatcaaatatccctttttggtgtcaat-- 307
Query: 1077 gttgttcataatatgagctgtttgcgttactttg-------ggcccagtgaccagtgtat 1129
||||| ||||||||||| |||| | ||| |||| |||||||||| ||||||||
Sbjct: 308 -ttgtttataatatgagccgttttctttagtttgggccaccggcccagtgatcagtgtat 366
Query: 1130 acttgtagt-agaactgctacgtagagtctattgtactatcacatcggcatcagaattgc 1188
||||||||| | | ||||||||| ||||||||||| |||| ||||||||||||||
Sbjct: 367 acttgtagtgggtattgctacgtatagtctattgta-----acattggcatcagaattgc 421
Query: 1189 atcaagttctaccacca 1205
|||| ||||||| ||||
Sbjct: 422 atcacgttctactacca 438
>gb|CW451463.1|CW451463 fsbb001f191i20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f191i20, DNA
sequence
Length = 668
Score = 375 bits (189), Expect = e-102
Identities = 380/437 (86%), Gaps = 25/437 (5%)
Strand = Plus / Plus
Query: 783 tgatactaatagggtttaatccgacaagatactttctaagcttgtacttcggttaaagtc 842
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 tgatactgatagggttcaatccgacaagatactttctaagcttgtacttcggttaaagtc 185
Query: 843 tacggctagaatgccatgtacaagcaaaaatatggtgattggcgataa--ctaatggcag 900
|||||||||||||||| |||| || ||||||||||||||||| || | ||||||||||
Sbjct: 186 tacggctagaatgccaagtacgag-aaaaatatggtgattggtgacagagctaatggcag 244
Query: 901 atctggatacatactctgtagtaaagcattttagatatcttgtgtgaacgggggcgagtg 960
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 245 atctggatacatactctgtagtaaagcattttagatctcttgtgttaacgggggcgagtg 304
Query: 961 aagttcagtaaagctcggag----cattctatggatgtatcaggtgcctgtggcaaggct 1016
| |||||| ||||||||||| |||||| ||||||||||||||||||||||| |||||
Sbjct: 305 aggttcagaaaagctcggagcattcattctttggatgtatcaggtgcctgtggc-aggct 363
Query: 1017 aacaatggaagacatatagtcttttgattggtatcaaatatcctttttgggtgtcaattt 1076
| |||| || |||| | || ||||||||||||||||||||||| |||| |||||||||
Sbjct: 364 accaatagaggaca-aaagccttttgattggtatcaaatatccctttttggtgtcaat-- 420
Query: 1077 gttgttcataatatgagctgtttgcgttactttg-------ggcccagtgaccagtgtat 1129
||||| ||||||||||| |||| | ||| |||| |||||||||| ||||||||
Sbjct: 421 -ttgtttataatatgagccgttttctttagtttgggccaccggcccagtgatcagtgtat 479
Query: 1130 acttgtagt-agaactgctacgtagagtctattgtactatcacatcggcatcagaattgc 1188
||||||||| | | ||||||||| ||||||||||| |||| ||||||||||||||
Sbjct: 480 acttgtagtgggtattgctacgtatagtctattgta-----acattggcatcagaattgc 534
Query: 1189 atcaagttctaccacca 1205
|||| ||||||| ||||
Sbjct: 535 atcacgttctactacca 551
Score = 81.8 bits (41), Expect = 1e-013
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 738 tcttcctgtatccgattggtctcgtcatcatcctgtctccactta 782
|||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 3 tcttcctgtacccgattggtctcgtcatcatcctgtctccactta 47
>gb|CW154558.1|CW154558 104_556_11145663_148_36348_052 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11145663, DNA
sequence
Length = 663
Score = 165 bits (83), Expect = 1e-038
Identities = 89/91 (97%)
Strand = Plus / Plus
Query: 276 aaacaaagaaccagtgggcccgtgatgatcctgcatttgttgttattctgattcttttcc 335
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 383 aaacaaagaaccagtgggctcgggatgatcctgcatttgttgttattctgattcttttcc 442
Query: 336 tcgtgtttgcaacatcagcttactgtgcagc 366
|||||||||||||||||||||||||||||||
Sbjct: 443 tcgtgtttgcaacatcagcttactgtgcagc 473
Score = 65.9 bits (33), Expect = 8e-009
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 368 tatggagagagtgcctcacatgctgctctaaca 400
|||||||||||||||||||||||||||||||||
Sbjct: 623 tatggagagagtgcctcacatgctgctctaaca 655
>gb|CW883795.1|CW883795 Sorghum CISP Intron:I27_G11_F_SRSC9_009_SORG_BTXX BTXX Sorghum
bicolor genomic, DNA sequence
Length = 174
Score = 139 bits (70), Expect = 7e-031
Identities = 76/78 (97%)
Strand = Plus / Plus
Query: 368 tatggagagagtgcctcacatgctgctctaacaatcacttcggttgtgtttctccatttc 427
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 92 tatggagagagtgcctcacatgctgctctaacaatcacttcagttgtgtttctgcatttc 151
Query: 428 ttgtttgctgggatagtt 445
||||||||||||||||||
Sbjct: 152 ttgtttgctgggatagtt 169
>gb|CW884429.1|CW884429 Sorghum CISP Intron:I27_C11_F_SRSC9_009_SORG_IS18 IS18 Sorghum
bicolor genomic, DNA sequence
Length = 185
Score = 139 bits (70), Expect = 7e-031
Identities = 76/78 (97%)
Strand = Plus / Plus
Query: 368 tatggagagagtgcctcacatgctgctctaacaatcacttcggttgtgtttctccatttc 427
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 104 tatggagagagtgcctcacatgctgctctaacaatcacttcagttgtgtttctgcatttc 163
Query: 428 ttgtttgctgggatagtt 445
||||||||||||||||||
Sbjct: 164 ttgtttgctgggatagtt 181
>gb|CW437723.1|CW437723 fsbb001f154p17f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f154p17, DNA
sequence
Length = 612
Score = 131 bits (66), Expect = 2e-028
Identities = 69/70 (98%)
Strand = Plus / Minus
Query: 180 agtggcaacaaagggatattgaatacacattttggcaaatggttcatctctgtacttcac 239
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 agtggcaacaaatggatattgaatacacattttggcaaatggttcatctctgtacttcac 421
Query: 240 caaaagtagt 249
||||||||||
Sbjct: 420 caaaagtagt 411
>gb|CW884671.1|CW884671 Sorghum CISP Intron:I24_H11_F_SRSC9_006_SORG_SPQM SPQM Sorghum
propinquum genomic, DNA sequence
Length = 174
Score = 123 bits (62), Expect = 4e-026
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 368 tatggagagagtgcctcacatgctgctctaacaatcacttcggttgtgtttctccatttc 427
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 105 tatggagagagtgcctcacatgctgctctaacaatcacttcagttgtgtttctgcatttc 164
Query: 428 ttgtttgctg 437
||||||||||
Sbjct: 165 ttgtttgctg 174
>gb|CW883852.1|CW883852 Sorghum CISP Intron:I25_H11_F_SRSC9_006_SORG_BTXXB BTXX Sorghum
bicolor genomic, DNA sequence
Length = 181
Score = 121 bits (61), Expect = 2e-025
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 368 tatggagagagtgcctcacatgctgctctaacaatcacttcggttgtgtttctccatttc 427
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 113 tatggagagagtgcctcacatgctgctctaacaatcacttcagttgtgtttctgcatttc 172
Query: 428 ttgtttgct 436
|||||||||
Sbjct: 173 ttgtttgct 181
>gb|CW884484.1|CW884484 Sorghum CISP Intron:I14_H11_F_SRSC9_006_SORG_IS18B IS18 Sorghum
bicolor genomic, DNA sequence
Length = 191
Score = 121 bits (61), Expect = 2e-025
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 368 tatggagagagtgcctcacatgctgctctaacaatcacttcggttgtgtttctccatttc 427
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 123 tatggagagagtgcctcacatgctgctctaacaatcacttcagttgtgtttctgcatttc 182
Query: 428 ttgtttgct 436
|||||||||
Sbjct: 183 ttgtttgct 191
>gb|CW200892.1|CW200892 104_626_11184284_148_36871_072 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11184284, DNA
sequence
Length = 622
Score = 99.6 bits (50), Expect = 6e-019
Identities = 75/82 (91%), Gaps = 1/82 (1%)
Strand = Plus / Minus
Query: 62 aggagtagctaagg-caaagggaggtggcaaagatgctgccgacgaccgcgtccaagggg 120
||||||||| |||| ||||||| | ||| ||||||||||||||||||||||||||||||
Sbjct: 589 aggagtagccaagggcaaagggcgtcggcgaagatgctgccgacgaccgcgtccaagggg 530
Query: 121 cgcggggcctcccgctccgccc 142
||||||||| ||||||||||||
Sbjct: 529 cgcggggccgcccgctccgccc 508
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 162 acctccgccgcatcgtcaag 181
||||||||||||||||||||
Sbjct: 489 acctccgccgcatcgtcaag 470
>gb|CW437724.1|CW437724 fsbb001f154p17k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f154p17, DNA
sequence
Length = 776
Score = 99.6 bits (50), Expect = 6e-019
Identities = 75/82 (91%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 62 aggagtagctaagg-caaagggaggtggcaaagatgctgccgacgaccgcgtccaagggg 120
||||||||| |||| ||||||| | ||| ||||||||||||||||||||||||||||||
Sbjct: 544 aggagtagccaagggcaaagggcgtcggcgaagatgctgccgacgaccgcgtccaagggg 603
Query: 121 cgcggggcctcccgctccgccc 142
||||||||| ||||||||||||
Sbjct: 604 cgcggggccgcccgctccgccc 625
Score = 42.1 bits (21), Expect = 0.12
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 20 gggacaaggcgccggagcctcagcaatcc 48
|||||||||||||||||| |||||||||
Sbjct: 457 gggacaaggcgccggagctccagcaatcc 485
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 162 acctccgccgcatcgtcaag 181
||||||||||||||||||||
Sbjct: 644 acctccgccgcatcgtcaag 663
>gb|CL167632.1|CL167632 104_364_10810213_116_31803_277 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810213, DNA
sequence
Length = 794
Score = 89.7 bits (45), Expect = 6e-016
Identities = 145/177 (81%), Gaps = 16/177 (9%)
Strand = Plus / Minus
Query: 1037 cttttgattggtatcaaatatcctttttgggtgtcaatttgttgttcataatatgagctg 1096
|||||||| |||||||||||||| |||| |||||||||||||| ||||||||||| |
Sbjct: 793 cttttgatgggtatcaaatatccctttttggtgtcaatttgttt---ataatatgagccg 737
Query: 1097 tttgcgttactttgggcc-------cagtgaccagtgtatacttgtagt-agaactgcta 1148
||| | ||| |||||||| |||||| ||||||||||||||||| | | |||||
Sbjct: 736 ttttctttagtttgggccaccggcccagtgatcagtgtatacttgtagtgggtattgcta 677
Query: 1149 cgtagagtctattgtactatcacatcggcatcagaattgcatcaagttctaccacca 1205
|||| ||||||||||| |||| |||||||||||||||||| ||||||| ||||
Sbjct: 676 cgtatagtctattgta-----acattggcatcagaattgcatcacgttctactacca 625
>gb|CW451462.1|CW451462 fsbb001f191i20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f191i20, DNA
sequence
Length = 662
Score = 87.7 bits (44), Expect = 2e-015
Identities = 141/172 (81%), Gaps = 16/172 (9%)
Strand = Plus / Minus
Query: 1042 gattggtatcaaatatcctttttgggtgtcaatttgttgttcataatatgagctgtttgc 1101
|||||||||||||||||| |||| |||||||||||||| ||||||||||| |||| |
Sbjct: 662 gattggtatcaaatatccctttttggtgtcaatttgttt---ataatatgagccgttttc 606
Query: 1102 gttactttgggcc-------cagtgaccagtgtatacttgtagt-agaactgctacgtag 1153
||| |||||||| |||||| ||||||||||||||||| | | |||||||||
Sbjct: 605 tttagtttgggccaccggcccagtgatcagtgtatacttgtagtgggtattgctacgtat 546
Query: 1154 agtctattgtactatcacatcggcatcagaattgcatcaagttctaccacca 1205
||||||||||| |||| |||||||||||||||||| ||||||| ||||
Sbjct: 545 agtctattgta-----acattggcatcagaattgcatcacgttctactacca 499
>gb|CN150176.1|CN150176 WOUND1_67_A11.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_67_A11_A002 5', mRNA sequence
Length = 309
Score = 87.7 bits (44), Expect = 2e-015
Identities = 50/52 (96%)
Strand = Plus / Plus
Query: 91 aagatgctgccgacgaccgcgtccaaggggcgcggggcctcccgctccgccc 142
||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 202 aagatgctgccgacgaccgcgtccaaggggcgcggggccgctcgctccgccc 253
Score = 67.9 bits (34), Expect = 2e-009
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 162 acctccgccgcatcgtcaagtggcaacaaagggatatt 199
|||||||||||||||||||||||||||||| |||||||
Sbjct: 272 acctccgccgcatcgtcaagtggcaacaaatggatatt 309
Score = 42.1 bits (21), Expect = 0.12
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 20 gggacaaggcgccggagcctcagcaatcc 48
|||||||||||||||||| |||||||||
Sbjct: 85 gggacaaggcgccggagctccagcaatcc 113
>gb|CW386970.1|CW386970 fsbb001f071b23k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f071b23, DNA
sequence
Length = 626
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 1170 acatcggcatcagaattgcatcaagttctaccacca 1205
|||| |||||||||||||||||| ||||||| ||||
Sbjct: 5 acattggcatcagaattgcatcacgttctactacca 40
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 298,529
Number of Sequences: 832831
Number of extensions: 298529
Number of successful extensions: 79005
Number of sequences better than 0.5: 29
Number of HSP's better than 0.5 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78864
Number of HSP's gapped (non-prelim): 60
length of query: 1205
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1185
effective length of database: 474,703,049
effective search space: 562523113065
effective search space used: 562523113065
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)