BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950080.2.1
(687 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG560669.1|BG560669 RHIZ2_58_C07.b1_A003 Rhizome2 (RHIZ2... 708 0.0
gb|BG558624.1|BG558624 RHIZ2_58_C07.g1_A003 Rhizome2 (RHIZ2... 618 e-175
gb|CW492052.1|CW492052 fsbb001f282c21f0 Sorghum methylation... 361 6e-098
gb|CL187165.1|CL187165 104_402_10900697_116_32436_071 Sorgh... 295 3e-078
gb|CW404143.1|CW404143 fsbb001f096c18f0 Sorghum methylation... 278 6e-073
gb|CW404144.1|CW404144 fsbb001f096c18k0 Sorghum methylation... 220 1e-055
gb|CW436095.1|CW436095 fsbb001f152i21k0 Sorghum methylation... 105 5e-021
>gb|BG560669.1|BG560669 RHIZ2_58_C07.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 459
Score = 708 bits (357), Expect = 0.0
Identities = 417/437 (95%)
Strand = Plus / Plus
Query: 7 ggccgcagggagcggcggcggctcgcggcacgcgcgtccgaacgtgctagtgacggggac 66
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 22 ggccgcagggagcggcggcggctcgcggcgcgcgcatccgaacgtgctagtgacggggac 81
Query: 67 gccggggacggggaagacgaccacgtgctcgctccttgccgacgccgcaggcctccgcca 126
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||
Sbjct: 82 gccggggacggggaagacgacgacgtgctccctccttgccgacgccgcaggcctccgtca 141
Query: 127 cgtcaacatcggcgacctagtccgcgagaagagccttcacgacggctgggacgccgacct 186
|||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 142 cgtcaacatcggcgacctcgtccgcgagaagagcctccacgacggctgggacgacgacct 201
Query: 187 cgagtgccatgtcatcaacgaggacctggtgtgcgacgagcttgaggacatgatggaaga 246
|||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||
Sbjct: 202 cgagtgccatgtcatcaacgaggacctggtctgcgatgagcttgaggacgtgatggaaga 261
Query: 247 aggtggtatactagtagattaccacggatgtgatttctttccagaacgttggtttgacct 306
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 262 aggtggtatactagtagattaccacggatgtgatttctttcctgaacgttggtttgacct 321
Query: 307 cgtagttgtgctccagactgacaactcaattctgcatgatcgcctgacgggcagaggtta 366
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 322 cgtagttgtgctccagactgacaactcaattctgcatgatcgtctgaccggcagaggtta 381
Query: 367 catgggttccaagctcgccaacaacatagagtgcgaaatcttccaagtgctcctcgagga 426
| ||||||||||||| | |||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 382 tacgggttccaagctcacgaacaacatcgagtgcgaaatcttccaagtgcttctcgagga 441
Query: 427 ggcgagggagagctaca 443
|||||||||||||||||
Sbjct: 442 ggcgagggagagctaca 458
>gb|BG558624.1|BG558624 RHIZ2_58_C07.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 516
Score = 618 bits (312), Expect = e-175
Identities = 360/376 (95%)
Strand = Plus / Plus
Query: 167 gacggctgggacgccgacctcgagtgccatgtcatcaacgaggacctggtgtgcgacgag 226
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 1 gacggctgggacgacgacctcgagtgccatgtcatcaacgaggacctggtctgcgatgag 60
Query: 227 cttgaggacatgatggaagaaggtggtatactagtagattaccacggatgtgatttcttt 286
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cttgaggacgtgatggaagaaggtggtatactagtagattaccacggatgtgatttcttt 120
Query: 287 ccagaacgttggtttgacctcgtagttgtgctccagactgacaactcaattctgcatgat 346
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cctgaacgttggtttgacctcgtagttgtgctccagactgacaactcaattctgcatgat 180
Query: 347 cgcctgacgggcagaggttacatgggttccaagctcgccaacaacatagagtgcgaaatc 406
|| ||||| ||||||||||| | ||||||||||||| | |||||||| ||||||||||||
Sbjct: 181 cgtctgaccggcagaggttatacgggttccaagctcacgaacaacatcgagtgcgaaatc 240
Query: 407 ttccaagtgctcctcgaggaggcgagggagagctacagagaggacatcgtgatgccattg 466
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 241 ttccaagtgcttctcgaggaggcgagggagagctacagagaggacatcgtgatgcctttg 300
Query: 467 cgaagtgacaacgtggaggatattagtaggaacgtaggtgcattgacagactgggtaaac 526
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 301 cgaagtgacaacgtggaggatattagtaggaacgtgggtgcattgacagactggataaac 360
Query: 527 aattggagacctagtt 542
||||||||||||||||
Sbjct: 361 aattggagacctagtt 376
>gb|CW492052.1|CW492052 fsbb001f282c21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f282c21, DNA
sequence
Length = 670
Score = 361 bits (182), Expect = 6e-098
Identities = 203/210 (96%)
Strand = Plus / Minus
Query: 7 ggccgcagggagcggcggcggctcgcggcacgcgcgtccgaacgtgctagtgacggggac 66
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 315 ggccgcagggagcggcggcggctcgcggcgcgcgcgtccgaacgtgctagtgacggggac 256
Query: 67 gccggggacggggaagacgaccacgtgctcgctccttgccgacgccgcaggcctccgcca 126
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||
Sbjct: 255 gccggggacggggaagacgacgacgtgctccctccttgccgacgccgcaggcctccgtca 196
Query: 127 cgtcaacatcggcgacctagtccgcgagaagagccttcacgacggctgggacgccgacct 186
|||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 195 cgtcaacatcggcgacctcgtccgcgagaagagcctccacgacggctgggacgacgacct 136
Query: 187 cgagtgccatgtcatcaacgaggacctggt 216
||||||||||||||||||||||||||||||
Sbjct: 135 cgagtgccatgtcatcaacgaggacctggt 106
>gb|CL187165.1|CL187165 104_402_10900697_116_32436_071 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10900697, DNA
sequence
Length = 670
Score = 295 bits (149), Expect = 3e-078
Identities = 167/173 (96%)
Strand = Plus / Minus
Query: 370 gggttccaagctcgccaacaacatagagtgcgaaatcttccaagtgctcctcgaggaggc 429
||||||||||||| | |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 668 gggttccaagctcacgaacaacatcgagtgcgaaatcttccaagtgcttctcgaggaggc 609
Query: 430 gagggagagctacagagaggacatcgtgatgccattgcgaagtgacaacgtggaggatat 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gagggagagctacagagaggacatcgtgatgccattgcgaagtgacaacgtggaggatat 549
Query: 490 tagtaggaacgtaggtgcattgacagactgggtaaacaattggagacctagtt 542
|||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 548 tagtaggaacgtgggtgcattgacagactggataaacaattggagacctagtt 496
Score = 44.1 bits (22), Expect = 0.017
Identities = 38/42 (90%), Gaps = 1/42 (2%)
Strand = Plus / Minus
Query: 616 aatgtacggggtgttttggttaaag-aacgaagtcgttcatc 656
|||||||| | |||||||||||||| |||||||| |||||||
Sbjct: 131 aatgtacgagatgttttggttaaagaaacgaagttgttcatc 90
>gb|CW404143.1|CW404143 fsbb001f096c18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f096c18, DNA
sequence
Length = 754
Score = 278 bits (140), Expect = 6e-073
Identities = 164/172 (95%)
Strand = Plus / Plus
Query: 358 cagaggttacatgggttccaagctcgccaacaacatagagtgcgaaatcttccaagtgct 417
||||||||| | ||||||||||||| | |||||||| |||||||||||||||||||||||
Sbjct: 583 cagaggttatacgggttccaagctcacgaacaacatcgagtgcgaaatcttccaagtgct 642
Query: 418 cctcgaggaggcgagggagagctacagagaggacatcgtgatgccattgcgaagtgacaa 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 tctcgaggaggcgagggagagctacagagaggacatcgtgatgccattgcgaagtgacaa 702
Query: 478 cgtggaggatattagtaggaacgtaggtgcattgacagactgggtaaacaat 529
|||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 703 cgtggaggatattagtaggaacgtgggtgcattgacagactggataaacaat 754
Score = 244 bits (123), Expect = 9e-063
Identities = 138/143 (96%)
Strand = Plus / Plus
Query: 218 tgcgacgagcttgaggacatgatggaagaaggtggtatactagtagattaccacggatgt 277
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tgcgatgagcttgaggacgtgatggaagaaggtggtatactagtagattaccacggatgt 422
Query: 278 gatttctttccagaacgttggtttgacctcgtagttgtgctccagactgacaactcaatt 337
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gatttctttcctgaacgttggtttgacctcgtagttgtgctccagactgacaactcaatt 482
Query: 338 ctgcatgatcgcctgacgggcag 360
||||||||||| ||||| |||||
Sbjct: 483 ctgcatgatcgtctgaccggcag 505
>gb|CW404144.1|CW404144 fsbb001f096c18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f096c18, DNA
sequence
Length = 775
Score = 220 bits (111), Expect = 1e-055
Identities = 117/119 (98%)
Strand = Plus / Minus
Query: 424 ggaggcgagggagagctacagagaggacatcgtgatgccattgcgaagtgacaacgtgga 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 ggaggcgagggagagctacagagaggacatcgtgatgccattgcgaagtgacaacgtgga 716
Query: 484 ggatattagtaggaacgtaggtgcattgacagactgggtaaacaattggagacctagtt 542
|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 715 ggatattagtaggaacgtgggtgcattgacagactggataaacaattggagacctagtt 657
Score = 44.1 bits (22), Expect = 0.017
Identities = 38/42 (90%), Gaps = 1/42 (2%)
Strand = Plus / Minus
Query: 616 aatgtacggggtgttttggttaaag-aacgaagtcgttcatc 656
|||||||| | |||||||||||||| |||||||| |||||||
Sbjct: 292 aatgtacgagatgttttggttaaagaaacgaagttgttcatc 251
>gb|CW436095.1|CW436095 fsbb001f152i21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f152i21, DNA
sequence
Length = 687
Score = 105 bits (53), Expect = 5e-021
Identities = 59/61 (96%)
Strand = Plus / Minus
Query: 482 gaggatattagtaggaacgtaggtgcattgacagactgggtaaacaattggagacctagt 541
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 687 gaggatattagtaggaacgtgggtgcattgacagactggataaacaattggagacctagt 628
Query: 542 t 542
|
Sbjct: 627 t 627
Score = 44.1 bits (22), Expect = 0.017
Identities = 38/42 (90%), Gaps = 1/42 (2%)
Strand = Plus / Minus
Query: 616 aatgtacggggtgttttggttaaag-aacgaagtcgttcatc 656
|||||||| | |||||||||||||| |||||||| |||||||
Sbjct: 262 aatgtacgagatgttttggttaaagaaacgaagttgttcatc 221
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 244,043
Number of Sequences: 832831
Number of extensions: 244043
Number of successful extensions: 62961
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62950
Number of HSP's gapped (non-prelim): 11
length of query: 687
length of database: 491,359,669
effective HSP length: 19
effective length of query: 668
effective length of database: 475,535,880
effective search space: 317657967840
effective search space used: 317657967840
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)