BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2921719.2.1
(779 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD223298.1|CD223298 CCC1_27_E03.b1_A007 Callus culture/c... 636 0.0
gb|CF488470.1|CF488470 POL1_50_E05.b1_A002 Pollen Sorghum b... 636 0.0
gb|CD223408.1|CD223408 CCC1_27_E03.g1_A007 Callus culture/c... 634 e-180
gb|CF485791.1|CF485791 POL1_33_E06.g1_A002 Pollen Sorghum b... 626 e-178
gb|CF485720.1|CF485720 POL1_33_E06.b1_A002 Pollen Sorghum b... 266 3e-069
gb|CW392949.1|CW392949 fsbb001f079m19k0 Sorghum methylation... 143 3e-032
gb|BZ332673.1|BZ332673 hx29h08.b1 WGS-SbicolorF (JM107 adap... 40 0.30
>gb|CD223298.1|CD223298 CCC1_27_E03.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_27_E03_A007 3', mRNA sequence
Length = 560
Score = 636 bits (321), Expect = 0.0
Identities = 403/429 (93%), Gaps = 1/429 (0%)
Strand = Plus / Plus
Query: 50 aaaaacgcatccgctccaaggggagttgatcgagaagcgttggtggacatgggtcagatc 109
|||| |||| |||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 16 aaaaccgcacccgctccaagggaagttgatcgagaagtgttggtggacatgggtcagatc 75
Query: 110 cagtactccgagaagtacttcgacgacacctacgagtacaggcacgtcgtcctcccgccc 169
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 76 cagtactccgagaagtacttcgacgatacctacgagtacagacacgtcgtcctcccgccc 135
Query: 170 gaggtcgccaagctcctccccaagaaccgcctcctctccgagaacgagtggcgcgcgatc 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 gaggtcgccaagctcctccccaagaaccgcctcctctccgagaacgagtggcgcgcgatc 195
Query: 230 ggagtgcagcagagccgcgggtgggtgcactacgcgatccaccgcccggagccgcacatc 289
|| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 196 ggcgtgcagcagagccgcgggtggatgcactacgcgatccaccgtccggagccgcacatc 255
Query: 290 atgctgttccgccgcccgatcaactaccagcagcagcaggaggcggctgccgcgcagatg 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 256 atgctgttccgccgcccgatcaactaccagcagcagcaggaggcggctgccgcgcagttg 315
Query: 350 ctggccaagtgagcccccggtggccagggcggcgaccaggaacgtttaaaaccctaaccc 409
|| |||||||||||||| | |||| |||| ||||||||| || ||||||||||||| ||
Sbjct: 316 ctcgccaagtgagcccctgctggcaagggtggcgaccagaaatgtttaaaaccctagtcc 375
Query: 410 cctttccatctctaaaaggggcgtcgctgttctgttgatcaattcctctatgctgttagt 469
||||| |||||||||||||||||||||| |||||||||| ||||||| | | ||||| ||
Sbjct: 376 ccttttcatctctaaaaggggcgtcgctattctgttgattaattcctgtgt-ctgttggt 434
Query: 470 tggaaactt 478
|||||||||
Sbjct: 435 tggaaactt 443
Score = 101 bits (51), Expect = 9e-020
Identities = 75/82 (91%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 501 tggtgtgtgccttgtgttcgtggaaattcctgtgaaggaactgccatgtgttaggc--tg 558
|||||| | |||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 462 tggtgtctcccttgtgttcgtggaaatgcctgtgaaggaactgccatgtgttaggctgtg 521
Query: 559 ttaccatgcccattttcttaat 580
||| |||| |||||||||||||
Sbjct: 522 ttatcatgaccattttcttaat 543
>gb|CF488470.1|CF488470 POL1_50_E05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_50_E05_A002 3', mRNA sequence
Length = 585
Score = 636 bits (321), Expect = 0.0
Identities = 403/429 (93%), Gaps = 1/429 (0%)
Strand = Plus / Plus
Query: 50 aaaaacgcatccgctccaaggggagttgatcgagaagcgttggtggacatgggtcagatc 109
|||| |||| |||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 46 aaaaccgcacccgctccaagggaagttgatcgagaagtgttggtggacatgggtcagatc 105
Query: 110 cagtactccgagaagtacttcgacgacacctacgagtacaggcacgtcgtcctcccgccc 169
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 106 cagtactccgagaagtacttcgacgatacctacgagtacagacacgtcgtcctcccgccc 165
Query: 170 gaggtcgccaagctcctccccaagaaccgcctcctctccgagaacgagtggcgcgcgatc 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 gaggtcgccaagctcctccccaagaaccgcctcctctccgagaacgagtggcgcgcgatc 225
Query: 230 ggagtgcagcagagccgcgggtgggtgcactacgcgatccaccgcccggagccgcacatc 289
|| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 226 ggcgtgcagcagagccgcgggtggatgcactacgcgatccaccgtccggagccgcacatc 285
Query: 290 atgctgttccgccgcccgatcaactaccagcagcagcaggaggcggctgccgcgcagatg 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 286 atgctgttccgccgcccgatcaactaccagcagcagcaggaggcggctgccgcgcagttg 345
Query: 350 ctggccaagtgagcccccggtggccagggcggcgaccaggaacgtttaaaaccctaaccc 409
|| |||||||||||||| | |||| |||| ||||||||| || ||||||||||||| ||
Sbjct: 346 ctcgccaagtgagcccctgctggcaagggtggcgaccagaaatgtttaaaaccctagtcc 405
Query: 410 cctttccatctctaaaaggggcgtcgctgttctgttgatcaattcctctatgctgttagt 469
||||| |||||||||||||||||||||| |||||||||| ||||||| | | ||||| ||
Sbjct: 406 ccttttcatctctaaaaggggcgtcgctattctgttgattaattcctgtgt-ctgttggt 464
Query: 470 tggaaactt 478
|||||||||
Sbjct: 465 tggaaactt 473
Score = 101 bits (51), Expect = 9e-020
Identities = 75/82 (91%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 501 tggtgtgtgccttgtgttcgtggaaattcctgtgaaggaactgccatgtgttaggc--tg 558
|||||| | |||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 492 tggtgtctcccttgtgttcgtggaaatgcctgtgaaggaactgccatgtgttaggctgtg 551
Query: 559 ttaccatgcccattttcttaat 580
||| |||| |||||||||||||
Sbjct: 552 ttatcatgaccattttcttaat 573
>gb|CD223408.1|CD223408 CCC1_27_E03.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_27_E03_A007 5', mRNA sequence
Length = 584
Score = 634 bits (320), Expect = e-180
Identities = 399/424 (94%), Gaps = 1/424 (0%)
Strand = Plus / Plus
Query: 55 cgcatccgctccaaggggagttgatcgagaagcgttggtggacatgggtcagatccagta 114
|||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 23 cgcacccgctccaagggaagttgatcgagaagtgttggtggacatgggtcagatccagta 82
Query: 115 ctccgagaagtacttcgacgacacctacgagtacaggcacgtcgtcctcccgcccgaggt 174
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 83 ctccgagaagtacttcgacgatacctacgagtacagacacgtcgtcctcccgcccgaggt 142
Query: 175 cgccaagctcctccccaagaaccgcctcctctccgagaacgagtggcgcgcgatcggagt 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 143 cgccaagctcctccccaagaaccgcctcctctccgagaacgagtggcgcgcgatcggcgt 202
Query: 235 gcagcagagccgcgggtgggtgcactacgcgatccaccgcccggagccgcacatcatgct 294
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 203 gcagcagagccgcgggtggatgcactacgcgatccaccgtccggagccgcacatcatgct 262
Query: 295 gttccgccgcccgatcaactaccagcagcagcaggaggcggctgccgcgcagatgctggc 354
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 263 gttccgccgcccgatcaactaccagcagcagcaggaggcggctgccgcgcagttgctcgc 322
Query: 355 caagtgagcccccggtggccagggcggcgaccaggaacgtttaaaaccctaacccccttt 414
|||||||||||| | |||| |||| ||||||||| || ||||||||||||| |||||||
Sbjct: 323 caagtgagcccctgctggcaagggtggcgaccagaaatgtttaaaaccctagtccccttt 382
Query: 415 ccatctctaaaaggggcgtcgctgttctgttgatcaattcctctatgctgttagttggaa 474
|||||||||||||||||||||| |||||||||| ||||||| | | ||||| |||||||
Sbjct: 383 tcatctctaaaaggggcgtcgctattctgttgattaattcctgtgt-ctgttggttggaa 441
Query: 475 actt 478
||||
Sbjct: 442 actt 445
Score = 109 bits (55), Expect = 4e-022
Identities = 76/82 (92%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 501 tggtgtgtgccttgtgttcgtggaaattcctgtgaaggaactgccatgtgttaggc--tg 558
|||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 464 tggtgtctgccttgtgttcgtggaaatgcctgtgaaggaactgccatgtgttaggctgtg 523
Query: 559 ttaccatgcccattttcttaat 580
||| |||| |||||||||||||
Sbjct: 524 ttatcatgaccattttcttaat 545
>gb|CF485791.1|CF485791 POL1_33_E06.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_33_E06_A002 5', mRNA sequence
Length = 575
Score = 626 bits (316), Expect = e-178
Identities = 398/424 (93%), Gaps = 1/424 (0%)
Strand = Plus / Minus
Query: 55 cgcatccgctccaaggggagttgatcgagaagcgttggtggacatgggtcagatccagta 114
|||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 560 cgcacccgctccaagggaagttgatcgagaagtgttggtggacatgggtcagatccagtc 501
Query: 115 ctccgagaagtacttcgacgacacctacgagtacaggcacgtcgtcctcccgcccgaggt 174
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 500 ctccgagaagtacttcgacgatacctacgagtacagacacgtcgtcctcccgcccgaggt 441
Query: 175 cgccaagctcctccccaagaaccgcctcctctccgagaacgagtggcgcgcgatcggagt 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 440 cgccaagctcctccccaagaaccgcctcctctccgagaacgagtggcgcgcgatcggcgt 381
Query: 235 gcagcagagccgcgggtgggtgcactacgcgatccaccgcccggagccgcacatcatgct 294
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 380 gcagcagagccgcgggtggatgcactacgcgatccaccgtccggagccgcacatcatgct 321
Query: 295 gttccgccgcccgatcaactaccagcagcagcaggaggcggctgccgcgcagatgctggc 354
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 320 gttccgccgcccgatcaactaccagcagcagcaggaggcggctgccgcgcagttgctcgc 261
Query: 355 caagtgagcccccggtggccagggcggcgaccaggaacgtttaaaaccctaacccccttt 414
|||||||||||| | |||| |||| ||||||||| || ||||||||||||| |||||||
Sbjct: 260 caagtgagcccctgctggcaagggtggcgaccagaaatgtttaaaaccctagtccccttt 201
Query: 415 ccatctctaaaaggggcgtcgctgttctgttgatcaattcctctatgctgttagttggaa 474
|||||||||||||||||||||| |||||||||| ||||||| | | ||||| |||||||
Sbjct: 200 tcatctctaaaaggggcgtcgctattctgttgattaattcctgtgt-ctgttggttggaa 142
Query: 475 actt 478
||||
Sbjct: 141 actt 138
Score = 109 bits (55), Expect = 4e-022
Identities = 76/82 (92%), Gaps = 2/82 (2%)
Strand = Plus / Minus
Query: 501 tggtgtgtgccttgtgttcgtggaaattcctgtgaaggaactgccatgtgttaggc--tg 558
|||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 119 tggtgtctgccttgtgttcgtggaaatgcctgtgaaggaactgccatgtgttaggctgtg 60
Query: 559 ttaccatgcccattttcttaat 580
||| |||| |||||||||||||
Sbjct: 59 ttatcatgaccattttcttaat 38
>gb|CF485720.1|CF485720 POL1_33_E06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_33_E06_A002 3', mRNA sequence
Length = 607
Score = 266 bits (134), Expect = 3e-069
Identities = 152/158 (96%)
Strand = Plus / Minus
Query: 50 aaaaacgcatccgctccaaggggagttgatcgagaagcgttggtggacatgggtcagatc 109
|||| |||| |||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 158 aaaaccgcacccgctccaagggaagttgatcgagaagtgttggtggacatgggtcagatc 99
Query: 110 cagtactccgagaagtacttcgacgacacctacgagtacaggcacgtcgtcctcccgccc 169
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 98 cagtactccgagaagtacttcgacgatacctacgagtacagacacgtcgtcctcccgccc 39
Query: 170 gaggtcgccaagctcctccccaagaaccgcctcctctc 207
||||||||||||||||||||||||||||||||||||||
Sbjct: 38 gaggtcgccaagctcctccccaagaaccgcctcctctc 1
>gb|CW392949.1|CW392949 fsbb001f079m19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f079m19, DNA
sequence
Length = 493
Score = 143 bits (72), Expect = 3e-032
Identities = 81/84 (96%)
Strand = Plus / Minus
Query: 68 aggggagttgatcgagaagcgttggtggacatgggtcagatccagtactccgagaagtac 127
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggaagttgatcgagaagtgttggtggacatgggtcagatccagtactccgagaagtac 202
Query: 128 ttcgacgacacctacgagtacagg 151
|||||||| |||||||||||||||
Sbjct: 201 ttcgacgatacctacgagtacagg 178
Score = 103 bits (52), Expect = 2e-020
Identities = 58/60 (96%)
Strand = Plus / Minus
Query: 152 cacgtcgtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccgag 211
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 77 cacgtcgtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcaactccgag 18
>gb|BZ332673.1|BZ332673 hx29h08.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hx29h08 5', DNA sequence
Length = 577
Score = 40.1 bits (20), Expect = 0.30
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 637 ttgacgtgatctttgtaatggtgt 660
|||||| |||||||||||||||||
Sbjct: 122 ttgacgagatctttgtaatggtgt 99
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 244,380
Number of Sequences: 832831
Number of extensions: 244380
Number of successful extensions: 83895
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83873
Number of HSP's gapped (non-prelim): 14
length of query: 779
length of database: 491,359,669
effective HSP length: 20
effective length of query: 759
effective length of database: 474,703,049
effective search space: 360299614191
effective search space used: 360299614191
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)