BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750929.2.1
(583 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN126830.1|CN126830 RHOH1_19_A05.g1_A002 Acid- and alkal... 244 8e-063
gb|CX621353.1|CX621353 GABR1_57_D08.g1_A002 GA- or brassino... 244 8e-063
gb|CX621689.1|CX621689 GABR1_59_C11.g1_A002 GA- or brassino... 244 8e-063
gb|CW114241.1|CW114241 104_488_11105887_116_34559_018 Sorgh... 133 2e-029
gb|CW114242.1|CW114242 104_488_11105887_148_34563_018 Sorgh... 133 2e-029
gb|CW457638.1|CW457638 fsbb001f203i17f0 Sorghum methylation... 133 2e-029
gb|CW231090.1|CW231090 104_680_11210942_116_37342_059 Sorgh... 117 1e-024
gb|CW457639.1|CW457639 fsbb001f203i17k0 Sorghum methylation... 117 1e-024
gb|CW231091.1|CW231091 104_680_11210942_148_37338_059 Sorgh... 90 3e-016
gb|BZ336254.1|BZ336254 hz30c10.g1 WGS-SbicolorF (JM107 adap... 52 6e-005
gb|CW280070.1|CW280070 104_755_11407420_116_35444_014 Sorgh... 52 6e-005
gb|AZ922607.1|AZ922607 SLCot2B01 Sorghum bicolor SLCot Sorg... 40 0.22
gb|CW104018.1|CW104018 104_472_11012202_148_34437_065 Sorgh... 40 0.22
gb|CW148052.1|CW148052 104_542_11140212_148_35007_040 Sorgh... 40 0.22
gb|CW207050.1|CW207050 104_636_11187911_148_36967_096 Sorgh... 40 0.22
gb|CW225113.1|CW225113 104_662_11204178_116_37202_069 Sorgh... 40 0.22
gb|CW225114.1|CW225114 104_662_11204178_148_37201_069 Sorgh... 40 0.22
gb|CW239129.1|CW239129 104_697_11217492_116_37509_044 Sorgh... 40 0.22
gb|CW252773.1|CW252773 104_716_11224697_148_35100_079 Sorgh... 40 0.22
gb|CW285152.1|CW285152 104_762_11410182_116_35502_025 Sorgh... 40 0.22
gb|CW321449.1|CW321449 104_814_11475558_148_35937_017 Sorgh... 40 0.22
gb|CW357757.1|CW357757 fsbb001f024i23k0 Sorghum methylation... 40 0.22
gb|CW378129.1|CW378129 fsbb001f056m04f0 Sorghum methylation... 40 0.22
gb|CW378130.1|CW378130 fsbb001f056m04k0 Sorghum methylation... 40 0.22
gb|CW443497.1|CW443497 fsbb001f163k03f0 Sorghum methylation... 40 0.22
gb|CW443498.1|CW443498 fsbb001f163k03k0 Sorghum methylation... 40 0.22
gb|CW447102.1|CW447102 fsbb001f180a24f0 Sorghum methylation... 40 0.22
gb|CD213723.1|CD213723 HS1_52_D08.g1_A012 Heat-shocked seed... 40 0.22
>gb|CN126830.1|CN126830 RHOH1_19_A05.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_19_A05_A002 5', mRNA sequence
Length = 767
Score = 244 bits (123), Expect = 8e-063
Identities = 165/179 (92%)
Strand = Plus / Plus
Query: 405 agatgcagggctcgtcctctccaccgatgctaagcctcgcctgaaatggacacccgagct 464
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 307 agatgcagggctggtcctctccaccgatgctaagcctcggttgaaatggacacccgagct 366
Query: 465 gcacgagcgttttgttgaggcggtgcatcagctcggaggcccagacaaggccacgccgaa 524
||| || |||||||| ||||| || |||||||| ||||| |||||||| || ||||||||
Sbjct: 367 gcatgaacgttttgtggaggcagtacatcagctaggagggccagacaaagctacgccgaa 426
Query: 525 aaccatcatgaggctcatggggatccctggactcaccctgtaccatctcaagagccatc 583
||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 427 aacaatcatgaggctcatggggatccctggactcaccctgtaccatcttaagagccatc 485
Score = 133 bits (67), Expect = 2e-029
Identities = 90/97 (92%), Gaps = 3/97 (3%)
Strand = Plus / Plus
Query: 286 cagatgtatcatcagcaacagctccacacccataaccagcacctgtcctcgtcaaggcca 345
|||||||||||||||||||||||||| | |||||||||||||||||||||| |||||
Sbjct: 209 cagatgtatcatcagcaacagctccataaccataaccagcacctgtcctcg---aggccg 265
Query: 346 ggcttacctcctgagaagcagttcctcctgcacggag 382
|||||||||||||||||||||||||||||||| ||||
Sbjct: 266 ggcttacctcctgagaagcagttcctcctgcaaggag 302
Score = 58.0 bits (29), Expect = 9e-007
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 226 gcaaccagacatttcagtacataacaggagctgaaca 262
|||| |||||||||||||||||||||||| |||||||
Sbjct: 174 gcaagcagacatttcagtacataacaggaactgaaca 210
Score = 40.1 bits (20), Expect = 0.22
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 19 gacaggaggtcggtagtttagttt 42
|||||||||| |||||||||||||
Sbjct: 23 gacaggaggtaggtagtttagttt 46
>gb|CX621353.1|CX621353 GABR1_57_D08.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_57_D08_A002 5', mRNA sequence
Length = 606
Score = 244 bits (123), Expect = 8e-063
Identities = 165/179 (92%)
Strand = Plus / Plus
Query: 405 agatgcagggctcgtcctctccaccgatgctaagcctcgcctgaaatggacacccgagct 464
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 299 agatgcagggctggtcctctccaccgatgctaagcctcggttgaaatggacacccgagct 358
Query: 465 gcacgagcgttttgttgaggcggtgcatcagctcggaggcccagacaaggccacgccgaa 524
||| || |||||||| ||||| || |||||||| ||||| |||||||| || ||||||||
Sbjct: 359 gcatgaacgttttgtggaggcagtacatcagctaggagggccagacaaagctacgccgaa 418
Query: 525 aaccatcatgaggctcatggggatccctggactcaccctgtaccatctcaagagccatc 583
||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 419 aacaatcatgaggctcatggggatccctggactcaccctgtaccatcttaagagccatc 477
Score = 133 bits (67), Expect = 2e-029
Identities = 90/97 (92%), Gaps = 3/97 (3%)
Strand = Plus / Plus
Query: 286 cagatgtatcatcagcaacagctccacacccataaccagcacctgtcctcgtcaaggcca 345
|||||||||||||||||||||||||| | |||||||||||||||||||||| |||||
Sbjct: 201 cagatgtatcatcagcaacagctccataaccataaccagcacctgtcctcg---aggccg 257
Query: 346 ggcttacctcctgagaagcagttcctcctgcacggag 382
|||||||||||||||||||||||||||||||| ||||
Sbjct: 258 ggcttacctcctgagaagcagttcctcctgcaaggag 294
Score = 58.0 bits (29), Expect = 9e-007
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 226 gcaaccagacatttcagtacataacaggagctgaaca 262
|||| |||||||||||||||||||||||| |||||||
Sbjct: 166 gcaagcagacatttcagtacataacaggaactgaaca 202
Score = 40.1 bits (20), Expect = 0.22
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 19 gacaggaggtcggtagtttagttt 42
|||||||||| |||||||||||||
Sbjct: 15 gacaggaggtaggtagtttagttt 38
>gb|CX621689.1|CX621689 GABR1_59_C11.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_59_C11_A002 5', mRNA sequence
Length = 668
Score = 244 bits (123), Expect = 8e-063
Identities = 165/179 (92%)
Strand = Plus / Plus
Query: 405 agatgcagggctcgtcctctccaccgatgctaagcctcgcctgaaatggacacccgagct 464
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 300 agatgcagggctggtcctctccaccgatgctaagcctcggttgaaatggacacccgagct 359
Query: 465 gcacgagcgttttgttgaggcggtgcatcagctcggaggcccagacaaggccacgccgaa 524
||| || |||||||| ||||| || |||||||| ||||| |||||||| || ||||||||
Sbjct: 360 gcatgaacgttttgtggaggcagtacatcagctaggagggccagacaaagcaacgccgaa 419
Query: 525 aaccatcatgaggctcatggggatccctggactcaccctgtaccatctcaagagccatc 583
||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 420 aacaatcatgaggctcatggggatccctggactcaccctgtaccatcttaagagccatc 478
Score = 133 bits (67), Expect = 2e-029
Identities = 90/97 (92%), Gaps = 3/97 (3%)
Strand = Plus / Plus
Query: 286 cagatgtatcatcagcaacagctccacacccataaccagcacctgtcctcgtcaaggcca 345
|||||||||||||||||||||||||| | |||||||||||||||||||||| |||||
Sbjct: 202 cagatgtatcatcagcaacagctccataaccataaccagcacctgtcctcg---aggccg 258
Query: 346 ggcttacctcctgagaagcagttcctcctgcacggag 382
|||||||||||||||||||||||||||||||| ||||
Sbjct: 259 ggcttacctcctgagaagcagttcctcctgcaaggag 295
Score = 58.0 bits (29), Expect = 9e-007
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 226 gcaaccagacatttcagtacataacaggagctgaaca 262
|||| |||||||||||||||||||||||| |||||||
Sbjct: 167 gcaagcagacatttcagtacataacaggaactgaaca 203
>gb|CW114241.1|CW114241 104_488_11105887_116_34559_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11105887, DNA
sequence
Length = 638
Score = 133 bits (67), Expect = 2e-029
Identities = 90/97 (92%), Gaps = 3/97 (3%)
Strand = Plus / Minus
Query: 286 cagatgtatcatcagcaacagctccacacccataaccagcacctgtcctcgtcaaggcca 345
|||||||||||||||||||||||||| | |||||||||||||||||||||| |||||
Sbjct: 467 cagatgtatcatcagcaacagctccataaccataaccagcacctgtcctcg---aggccg 411
Query: 346 ggcttacctcctgagaagcagttcctcctgcacggag 382
|||||||||||||||||||||||||||||||| ||||
Sbjct: 410 ggcttacctcctgagaagcagttcctcctgcaaggag 374
Score = 133 bits (67), Expect = 2e-029
Identities = 97/107 (90%)
Strand = Plus / Minus
Query: 405 agatgcagggctcgtcctctccaccgatgctaagcctcgcctgaaatggacacccgagct 464
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 369 agatgcagggctggtcctctccaccgatgctaagcctcggttgaaatggacacccgagct 310
Query: 465 gcacgagcgttttgttgaggcggtgcatcagctcggaggcccagaca 511
||| || |||||||| ||||| || |||||||| ||||| |||||||
Sbjct: 309 gcatgaacgttttgtggaggcagtacatcagctaggagggccagaca 263
Score = 117 bits (59), Expect = 1e-024
Identities = 65/67 (97%)
Strand = Plus / Minus
Query: 517 acgccgaaaaccatcatgaggctcatggggatccctggactcaccctgtaccatctcaag 576
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 139 acgccgaaaacaatcatgaggctcatggggatccctggactcaccctgtaccatcttaag 80
Query: 577 agccatc 583
|||||||
Sbjct: 79 agccatc 73
Score = 58.0 bits (29), Expect = 9e-007
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 226 gcaaccagacatttcagtacataacaggagctgaaca 262
|||| |||||||||||||||||||||||| |||||||
Sbjct: 604 gcaagcagacatttcagtacataacaggaactgaaca 568
>gb|CW114242.1|CW114242 104_488_11105887_148_34563_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11105887, DNA
sequence
Length = 546
Score = 133 bits (67), Expect = 2e-029
Identities = 97/107 (90%)
Strand = Plus / Plus
Query: 405 agatgcagggctcgtcctctccaccgatgctaagcctcgcctgaaatggacacccgagct 464
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 376 agatgcagggctggtcctctccaccgatgctaagcctcggttgaaatggacacccgagct 435
Query: 465 gcacgagcgttttgttgaggcggtgcatcagctcggaggcccagaca 511
||| || |||||||| ||||| || |||||||| ||||| |||||||
Sbjct: 436 gcatgaacgttttgtggaggcagtacatcagctaggagggccagaca 482
Score = 133 bits (67), Expect = 2e-029
Identities = 90/97 (92%), Gaps = 3/97 (3%)
Strand = Plus / Plus
Query: 286 cagatgtatcatcagcaacagctccacacccataaccagcacctgtcctcgtcaaggcca 345
|||||||||||||||||||||||||| | |||||||||||||||||||||| |||||
Sbjct: 278 cagatgtatcatcagcaacagctccataaccataaccagcacctgtcctcg---aggccg 334
Query: 346 ggcttacctcctgagaagcagttcctcctgcacggag 382
|||||||||||||||||||||||||||||||| ||||
Sbjct: 335 ggcttacctcctgagaagcagttcctcctgcaaggag 371
Score = 58.0 bits (29), Expect = 9e-007
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 226 gcaaccagacatttcagtacataacaggagctgaaca 262
|||| |||||||||||||||||||||||| |||||||
Sbjct: 141 gcaagcagacatttcagtacataacaggaactgaaca 177
>gb|CW457638.1|CW457638 fsbb001f203i17f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f203i17, DNA
sequence
Length = 739
Score = 133 bits (67), Expect = 2e-029
Identities = 97/107 (90%)
Strand = Plus / Plus
Query: 405 agatgcagggctcgtcctctccaccgatgctaagcctcgcctgaaatggacacccgagct 464
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 319 agatgcagggctggtcctctccaccgatgctaagcctcggttgaaatggacacccgagct 378
Query: 465 gcacgagcgttttgttgaggcggtgcatcagctcggaggcccagaca 511
||| || |||||||| ||||| || |||||||| ||||| |||||||
Sbjct: 379 gcatgaacgttttgtggaggcagtacatcagctaggagggccagaca 425
Score = 133 bits (67), Expect = 2e-029
Identities = 90/97 (92%), Gaps = 3/97 (3%)
Strand = Plus / Plus
Query: 286 cagatgtatcatcagcaacagctccacacccataaccagcacctgtcctcgtcaaggcca 345
|||||||||||||||||||||||||| | |||||||||||||||||||||| |||||
Sbjct: 221 cagatgtatcatcagcaacagctccataaccataaccagcacctgtcctcg---aggccg 277
Query: 346 ggcttacctcctgagaagcagttcctcctgcacggag 382
|||||||||||||||||||||||||||||||| ||||
Sbjct: 278 ggcttacctcctgagaagcagttcctcctgcaaggag 314
Score = 117 bits (59), Expect = 1e-024
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 517 acgccgaaaaccatcatgaggctcatggggatccctggactcaccctgtaccatctcaag 576
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 549 acgccgaaaacaatcatgaggctcatggggatccctggactcaccctgtaccatcttaag 608
Query: 577 agccatc 583
|||||||
Sbjct: 609 agccatc 615
Score = 58.0 bits (29), Expect = 9e-007
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 226 gcaaccagacatttcagtacataacaggagctgaaca 262
|||| |||||||||||||||||||||||| |||||||
Sbjct: 84 gcaagcagacatttcagtacataacaggaactgaaca 120
>gb|CW231090.1|CW231090 104_680_11210942_116_37342_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11210942, DNA
sequence
Length = 687
Score = 117 bits (59), Expect = 1e-024
Identities = 65/67 (97%)
Strand = Plus / Minus
Query: 517 acgccgaaaaccatcatgaggctcatggggatccctggactcaccctgtaccatctcaag 576
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 498 acgccgaaaacaatcatgaggctcatggggatccctggactcaccctgtaccatcttaag 439
Query: 577 agccatc 583
|||||||
Sbjct: 438 agccatc 432
Score = 75.8 bits (38), Expect = 4e-012
Identities = 59/66 (89%)
Strand = Plus / Minus
Query: 446 tgaaatggacacccgagctgcacgagcgttttgttgaggcggtgcatcagctcggaggcc 505
|||||||||||||||||||||| || |||||||| ||||| || |||||||| ||||| |
Sbjct: 687 tgaaatggacacccgagctgcatgaacgttttgtggaggcagtacatcagctaggagggc 628
Query: 506 cagaca 511
||||||
Sbjct: 627 cagaca 622
>gb|CW457639.1|CW457639 fsbb001f203i17k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f203i17, DNA
sequence
Length = 664
Score = 117 bits (59), Expect = 1e-024
Identities = 65/67 (97%)
Strand = Plus / Minus
Query: 517 acgccgaaaaccatcatgaggctcatggggatccctggactcaccctgtaccatctcaag 576
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 556 acgccgaaaacaatcatgaggctcatggggatccctggactcaccctgtaccatcttaag 497
Query: 577 agccatc 583
|||||||
Sbjct: 496 agccatc 490
>gb|CW231091.1|CW231091 104_680_11210942_148_37338_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11210942, DNA
sequence
Length = 697
Score = 89.7 bits (45), Expect = 3e-016
Identities = 65/71 (91%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 286 cagatgtatcatcagcaacagctccacacccataaccagcacctgtcctcgtcaaggcca 345
|||||||||||||||||||||||||| | |||||||||||||||||||||| |||||
Sbjct: 630 cagatgtatcatcagcaacagctccataaccataaccagcacctgtcctcg---aggccg 686
Query: 346 ggcttacctcc 356
|||||||||||
Sbjct: 687 ggcttacctcc 697
Score = 58.0 bits (29), Expect = 9e-007
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 226 gcaaccagacatttcagtacataacaggagctgaaca 262
|||| |||||||||||||||||||||||| |||||||
Sbjct: 493 gcaagcagacatttcagtacataacaggaactgaaca 529
Score = 40.1 bits (20), Expect = 0.22
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 19 gacaggaggtcggtagtttagttt 42
|||||||||| |||||||||||||
Sbjct: 342 gacaggaggtaggtagtttagttt 365
>gb|BZ336254.1|BZ336254 hz30c10.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hz30c10 5', DNA sequence
Length = 600
Score = 52.0 bits (26), Expect = 6e-005
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 530 tcatgaggctcatggggatccctggactcaccctgtaccatctcaagagccatc 583
|||||||||||||||| || || ||||||||| |||||||| | || |||||||
Sbjct: 340 tcatgaggctcatgggaattccaggactcaccttgtaccatttgaaaagccatc 393
>gb|CW280070.1|CW280070 104_755_11407420_116_35444_014 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11407420, DNA
sequence
Length = 597
Score = 52.0 bits (26), Expect = 6e-005
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 530 tcatgaggctcatggggatccctggactcaccctgtaccatctcaagagccatc 583
|||||||||||||||| || || ||||||||| |||||||| | || |||||||
Sbjct: 250 tcatgaggctcatgggaattccaggactcaccttgtaccatttgaaaagccatc 197
>gb|AZ922607.1|AZ922607 SLCot2B01 Sorghum bicolor SLCot Sorghum bicolor genomic, DNA
sequence
Length = 229
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 110 cacaccacacaaacaaacac 129
||||||||||||||||||||
Sbjct: 108 cacaccacacaaacaaacac 127
>gb|CW104018.1|CW104018 104_472_11012202_148_34437_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11012202, DNA
sequence
Length = 656
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 74 tctcactcactcactcactc 93
||||||||||||||||||||
Sbjct: 276 tctcactcactcactcactc 295
>gb|CW148052.1|CW148052 104_542_11140212_148_35007_040 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11140212, DNA
sequence
Length = 716
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 74 tctcactcactcactcactc 93
||||||||||||||||||||
Sbjct: 375 tctcactcactcactcactc 356
>gb|CW207050.1|CW207050 104_636_11187911_148_36967_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187911, DNA
sequence
Length = 704
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 110 cacaccacacaaacaaacac 129
||||||||||||||||||||
Sbjct: 630 cacaccacacaaacaaacac 649
>gb|CW225113.1|CW225113 104_662_11204178_116_37202_069 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11204178, DNA
sequence
Length = 644
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 75 ctcactcactcactcactcc 94
||||||||||||||||||||
Sbjct: 636 ctcactcactcactcactcc 617
>gb|CW225114.1|CW225114 104_662_11204178_148_37201_069 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11204178, DNA
sequence
Length = 662
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 75 ctcactcactcactcactcc 94
||||||||||||||||||||
Sbjct: 504 ctcactcactcactcactcc 523
>gb|CW239129.1|CW239129 104_697_11217492_116_37509_044 Sorghum methylation filtered
library (LibID: 104) Sorghum bicolor genomic clone
11217492, DNA sequence
Length = 645
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 75 ctcactcactcactcactcc 94
||||||||||||||||||||
Sbjct: 17 ctcactcactcactcactcc 36
>gb|CW252773.1|CW252773 104_716_11224697_148_35100_079 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11224697, DNA
sequence
Length = 604
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 74 tctcactcactcactcactc 93
||||||||||||||||||||
Sbjct: 529 tctcactcactcactcactc 548
>gb|CW285152.1|CW285152 104_762_11410182_116_35502_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11410182, DNA
sequence
Length = 622
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 110 cacaccacacaaacaaacac 129
||||||||||||||||||||
Sbjct: 208 cacaccacacaaacaaacac 189
>gb|CW321449.1|CW321449 104_814_11475558_148_35937_017 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11475558, DNA
sequence
Length = 664
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 74 tctcactcactcactcactc 93
||||||||||||||||||||
Sbjct: 641 tctcactcactcactcactc 660
>gb|CW357757.1|CW357757 fsbb001f024i23k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f024i23, DNA
sequence
Length = 564
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 74 tctcactcactcactcactc 93
||||||||||||||||||||
Sbjct: 195 tctcactcactcactcactc 214
>gb|CW378129.1|CW378129 fsbb001f056m04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f056m04, DNA
sequence
Length = 715
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 74 tctcactcactcactcactc 93
||||||||||||||||||||
Sbjct: 278 tctcactcactcactcactc 259
>gb|CW378130.1|CW378130 fsbb001f056m04k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f056m04, DNA
sequence
Length = 726
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 74 tctcactcactcactcactc 93
||||||||||||||||||||
Sbjct: 686 tctcactcactcactcactc 705
>gb|CW443497.1|CW443497 fsbb001f163k03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f163k03, DNA
sequence
Length = 552
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 74 tctcactcactcactcactc 93
||||||||||||||||||||
Sbjct: 451 tctcactcactcactcactc 432
>gb|CW443498.1|CW443498 fsbb001f163k03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f163k03, DNA
sequence
Length = 689
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 74 tctcactcactcactcactc 93
||||||||||||||||||||
Sbjct: 239 tctcactcactcactcactc 258
>gb|CW447102.1|CW447102 fsbb001f180a24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f180a24, DNA
sequence
Length = 630
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 74 tctcactcactcactcactc 93
||||||||||||||||||||
Sbjct: 342 tctcactcactcactcactc 361
>gb|CD213723.1|CD213723 HS1_52_D08.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_52_D08_A012 5', mRNA sequence
Length = 663
Score = 40.1 bits (20), Expect = 0.22
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 70 tctgtctcactcactcactcactc 93
|||||||| |||||||||||||||
Sbjct: 36 tctgtctccctcactcactcactc 59
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 152,789
Number of Sequences: 832831
Number of extensions: 152789
Number of successful extensions: 41979
Number of sequences better than 0.5: 28
Number of HSP's better than 0.5 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41841
Number of HSP's gapped (non-prelim): 106
length of query: 583
length of database: 491,359,669
effective HSP length: 19
effective length of query: 564
effective length of database: 475,535,880
effective search space: 268202236320
effective search space used: 268202236320
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)