BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750763.3.1
(819 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW328835.1|CW328835 104_825_11479519_116_35999_030 Sorgh... 870 0.0
gb|CW328836.1|CW328836 104_825_11479519_148_36000_030 Sorgh... 757 0.0
gb|BF655654.1|BF655654 FM1_47_B10.b1_A003 Floral-Induced Me... 517 e-145
gb|CW380540.1|CW380540 fsbb001f061g11f0 Sorghum methylation... 480 e-133
gb|CW380541.1|CW380541 fsbb001f061g11k0 Sorghum methylation... 246 3e-063
gb|CW022866.1|CW022866 104_162_10432101_5_30000 Sorghum met... 58 1e-006
gb|CW160113.1|CW160113 104_566_11149711_116_36428_024 Sorgh... 58 1e-006
gb|CW160114.1|CW160114 104_566_11149711_148_36427_024 Sorgh... 58 1e-006
gb|CW230316.1|CW230316 104_679_11210473_148_37335_015 Sorgh... 58 1e-006
gb|CW060594.1|CW060594 104_304_10519937_114_30143 Sorghum m... 48 0.001
gb|CW060595.1|CW060595 104_304_10519937_115_30144 Sorghum m... 48 0.001
gb|CW253678.1|CW253678 104_717_11225229_148_35108_089 Sorgh... 48 0.001
gb|CW266971.1|CW266971 104_737_11400437_148_35293_031 Sorgh... 48 0.001
gb|AC169370.3| Sorghum bicolor clone SB_BBc0011I20, WORKING... 48 0.001
gb|CW333051.1|CW333051 104_830_11481737_148_36039_065 Sorgh... 42 0.079
gb|CW445577.1|CW445577 fsbb001f170m17k0 Sorghum methylation... 42 0.079
gb|BZ344896.1|BZ344896 hr41f08.b1 WGS-SbicolorF (JM107 adap... 40 0.31
>gb|CW328835.1|CW328835 104_825_11479519_116_35999_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479519, DNA
sequence
Length = 614
Score = 870 bits (439), Expect = 0.0
Identities = 487/503 (96%)
Strand = Plus / Plus
Query: 317 aatggctgctctgcaggtccatcaacaacatcacggcccggcgaaatctcgggtacctgt 376
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 78 aatggctgctctgcaggtccatcaggaacagcacggcccggcgaaatctcgggtacctgt 137
Query: 377 cgtgcgggacaggcaaccccatcgacgactgctggcgctgcgactcggactggcacaaca 436
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 138 cgtgcgggacaggcaaccccatcgatgactgctggcgttgcgactcggactggcacaaca 197
Query: 437 accggaagcgcctcgccgactgtggcatcggctttggccgcaacgccatcggcggccgtg 496
|||| ||||||| || ||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct: 198 accgccagcgcctagctgactgtggcatcggcttcggccgcaacgccatcggtggccgcg 257
Query: 497 acggcaagatctacgtggtcaccgacccgagcgatgacgaccctgtcaacccgcgcaagg 556
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 258 acggcaagatctacgtggtcaccgacccgagcgatgacgatcctgtcaacccgcgcaagg 317
Query: 557 gcaccctccgctacgccgtcatccacgaagagccgctctggatcatcttcaagcgggaca 616
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 318 gcaccctccgctacgccgtcatccaggaagagccgctctggatcatcttcaagcgggaca 377
Query: 617 tggtcatcacgctcaaggaggagctcatcatgaacagcttcaagaccatcgacggacgcg 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 378 tggtcatcacgctcaaggaggagctcatcatgaacagcttcaagaccatcgacggccgcg 437
Query: 677 gcgccaacgtgcacatcgccaatggtgcctgcatcaccatccagtacatcaccaacgtca 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gcgccaacgtgcacatcgccaatggtgcctgcatcaccatccagtacatcaccaacgtca 497
Query: 737 tcatccacgggctccacatccacgactgcaagcccacggggaacgccatggtgcgcagct 796
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tcatccacggtctccacatccacgactgcaagcccacggggaacgccatggtgcgcagct 557
Query: 797 cgcccagccactatgggtggcgc 819
|||||||||||||||||||||||
Sbjct: 558 cgcccagccactatgggtggcgc 580
>gb|CW328836.1|CW328836 104_825_11479519_148_36000_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479519, DNA
sequence
Length = 712
Score = 757 bits (382), Expect = 0.0
Identities = 421/434 (97%)
Strand = Plus / Minus
Query: 386 caggcaaccccatcgacgactgctggcgctgcgactcggactggcacaacaaccggaagc 445
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 712 caggcaaccccatcgatgactgctggcgttgcgactcggactggcacaacaaccgccagc 653
Query: 446 gcctcgccgactgtggcatcggctttggccgcaacgccatcggcggccgtgacggcaaga 505
|||| || ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct: 652 gcctagctgactgtggcatcggcttcggccgcaacgccatcggtggccgcgacggcaaga 593
Query: 506 tctacgtggtcaccgacccgagcgatgacgaccctgtcaacccgcgcaagggcaccctcc 565
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 592 tctacgtggtcaccgacccgagcgatgacgatcctgtcaacccgcgcaagggcaccctcc 533
Query: 566 gctacgccgtcatccacgaagagccgctctggatcatcttcaagcgggacatggtcatca 625
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 gctacgccgtcatccaggaagagccgctctggatcatcttcaagcgggacatggtcatca 473
Query: 626 cgctcaaggaggagctcatcatgaacagcttcaagaccatcgacggacgcggcgccaacg 685
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 472 cgctcaaggaggagctcatcatgaacagcttcaagaccatcgacggccgcggcgccaacg 413
Query: 686 tgcacatcgccaatggtgcctgcatcaccatccagtacatcaccaacgtcatcatccacg 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tgcacatcgccaatggtgcctgcatcaccatccagtacatcaccaacgtcatcatccacg 353
Query: 746 ggctccacatccacgactgcaagcccacggggaacgccatggtgcgcagctcgcccagcc 805
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gtctccacatccacgactgcaagcccacggggaacgccatggtgcgcagctcgcccagcc 293
Query: 806 actatgggtggcgc 819
||||||||||||||
Sbjct: 292 actatgggtggcgc 279
>gb|BF655654.1|BF655654 FM1_47_B10.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 365
Score = 517 bits (261), Expect = e-145
Identities = 308/324 (95%)
Strand = Plus / Plus
Query: 333 gtccatcaacaacatcacggcccggcgaaatctcgggtacctgtcgtgcgggacaggcaa 392
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40 gtccatcaggaacagcacggcccggcgaaatctcgggtacctgtcgtgcgggacaggcaa 99
Query: 393 ccccatcgacgactgctggcgctgcgactcggactggcacaacaaccggaagcgcctcgc 452
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 100 ccccatcgatgactgctggcgctgcgactcggactggcacaacaaccgccagcgcctagc 159
Query: 453 cgactgtggcatcggctttggccgcaacgccatcggcggccgtgacggcaagatctacgt 512
||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 160 tgactgtggcatcggcttcggccgcaacgccatcggtggccgcgacggcaagatctacgt 219
Query: 513 ggtcaccgacccgagcgatgacgaccctgtcaacccgcgcaagggcaccctccgctacgc 572
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 220 ggtcaccgacccgagcgacgacgatcctgtcaacccgcgcaagggcaccctccgctacgc 279
Query: 573 cgtcatccacgaagagccgctctggatcatcttcaagcgggacatggtcatcacgctcaa 632
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 280 tgtcatccaggaagagccgctctggatcatcttcaagcgggacatggtnatcacgctcaa 339
Query: 633 ggaggagctcatcatgaacagctt 656
||||||||||||||||||||||||
Sbjct: 340 ggaggagctcatcatgaacagctt 363
>gb|CW380540.1|CW380540 fsbb001f061g11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f061g11, DNA
sequence
Length = 583
Score = 480 bits (242), Expect = e-133
Identities = 291/306 (95%), Gaps = 1/306 (0%)
Strand = Plus / Plus
Query: 317 aatggctgctctgcaggtccatcaacaacatcacggcccggcgaaatctcgggtacctgt 376
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 278 aatggctgctctgcaggtccatcaggaacagcacggcccggcgaaatctcgggtacctgt 337
Query: 377 cgtgcgggacaggcaaccccatcgacgactgctggcgctgcgactcggactggcacaaca 436
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 338 cgtgcgggacaggcaaccccatcgatgactgctggcgttgcgactcggactggcacaaca 397
Query: 437 accggaagcgcctcgccgactgtggcatcggctttggccgcaacgccatcggcggccgtg 496
|||| ||||||| || ||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct: 398 accgccagcgcctagctgactgtggcatcggcttcggccgcaacgccatcggtggccgcg 457
Query: 497 acggcaagatctacgtggtcaccgacccgagcgatgacgaccctgtcaacccgcgc-aag 555
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 458 acggcaagatctacgtggtcaccgacccgagcgatgacgatcctgtcaacccgcgcaaag 517
Query: 556 ggcaccctccgctacgccgtcatccacgaagagccgctctggatcatcttcaagcgggac 615
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 518 ggcaccctccgctacgccgtcatccaagaagagccgctctggatcatcttcaagcgggac 577
Query: 616 atggtc 621
||||||
Sbjct: 578 atggtc 583
Score = 65.9 bits (33), Expect = 5e-009
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 82 ctggctgcattggtcttctagttactgtaactggattcctaaatgagtattgctatatct 141
|||||||||| ||||||||| |||||||||||| |||| | |||| ||||||| ||||
Sbjct: 7 ctggctgcatcggtcttctaattactgtaactgaattcgtcaatgcatattgctgcatct 66
Query: 142 agaataaccgtggctcatgca 162
||||| ||||||| ||||||
Sbjct: 67 agaattgccgtggcccatgca 87
>gb|CW380541.1|CW380541 fsbb001f061g11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f061g11, DNA
sequence
Length = 507
Score = 246 bits (124), Expect = 3e-063
Identities = 148/156 (94%)
Strand = Plus / Minus
Query: 664 atcgacggacgcggcgccaacgtgcacatcgccaatggtgcctgcatcaccatccagtac 723
|||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 507 atcgacggccgcggggccaacgtgcacatcgccaatggtgcgtgcatcaccatccagtac 448
Query: 724 atcaccaacgtcatcatccacgggctccacatccacgactgcaagcccacggggaacgcc 783
||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 447 atccccaacgtcatcatccacgctctccacatccacgagtgcaagcccacggggaacgcc 388
Query: 784 atggtgcgcagctcgcccagccactatgggtggcgc 819
|||| |||||||||||||||||||||||||||||||
Sbjct: 387 atggcgcgcagctcgcccagccactatgggtggcgc 352
>gb|CW022866.1|CW022866 104_162_10432101_5_30000 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10432101, DNA
sequence
Length = 617
Score = 58.0 bits (29), Expect = 1e-006
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 620 tcatcacgctcaaggaggagctcatcatgaacagcttcaagaccatcgacggacgcggcg 679
|||||||||||||||||||||||||||| | || ||||||||||||||| || ||||
Sbjct: 87 tcatcacgctcaaggaggagctcatcatccagggcgacaagaccatcgacggccggggcg 28
Query: 680 c 680
|
Sbjct: 27 c 27
>gb|CW160113.1|CW160113 104_566_11149711_116_36428_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149711, DNA
sequence
Length = 709
Score = 58.0 bits (29), Expect = 1e-006
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 657 caagaccatcgacggacgcggcgccaacgtgcacatcgccaatggtgcctgcatcac 713
||||||||||||||| |||||||| | |||||||||||||| || ||| |||||||
Sbjct: 405 caagaccatcgacgggcgcggcgcgcaggtgcacatcgccaacggcgccggcatcac 461
>gb|CW160114.1|CW160114 104_566_11149711_148_36427_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149711, DNA
sequence
Length = 706
Score = 58.0 bits (29), Expect = 1e-006
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 657 caagaccatcgacggacgcggcgccaacgtgcacatcgccaatggtgcctgcatcac 713
||||||||||||||| |||||||| | |||||||||||||| || ||| |||||||
Sbjct: 366 caagaccatcgacgggcgcggcgcgcaggtgcacatcgccaacggcgccggcatcac 310
>gb|CW230316.1|CW230316 104_679_11210473_148_37335_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11210473, DNA
sequence
Length = 670
Score = 58.0 bits (29), Expect = 1e-006
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 657 caagaccatcgacggacgcggcgccaacgtgcacatcgccaatggtgcctgcatcac 713
||||||||||||||| |||||||| | |||||||||||||| || ||| |||||||
Sbjct: 182 caagaccatcgacgggcgcggcgcgcaggtgcacatcgccaacggcgccggcatcac 126
>gb|CW060594.1|CW060594 104_304_10519937_114_30143 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10519937, DNA
sequence
Length = 670
Score = 48.1 bits (24), Expect = 0.001
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 647 tgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacatcg 694
||||||||| ||||||||||||||| || ||||| |||||||||||
Sbjct: 368 tgaacagctacaagaccatcgacgggcggggcgcgcgcgtgcacatcg 415
Score = 44.1 bits (22), Expect = 0.020
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 388 ggcaaccccatcgacgactgctggcg 413
|||||||| |||||||||||||||||
Sbjct: 106 ggcaacccaatcgacgactgctggcg 131
>gb|CW060595.1|CW060595 104_304_10519937_115_30144 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10519937, DNA
sequence
Length = 550
Score = 48.1 bits (24), Expect = 0.001
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 647 tgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacatcg 694
||||||||| ||||||||||||||| || ||||| |||||||||||
Sbjct: 492 tgaacagctacaagaccatcgacgggcggggcgcgcgcgtgcacatcg 445
>gb|CW253678.1|CW253678 104_717_11225229_148_35108_089 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11225229, DNA
sequence
Length = 617
Score = 48.1 bits (24), Expect = 0.001
Identities = 108/136 (79%)
Strand = Plus / Plus
Query: 400 gacgactgctggcgctgcgactcggactggcacaacaaccggaagcgcctcgccgactgt 459
||||||||||||||||||||| | |||| | |||||||| ||||||| || |||||
Sbjct: 92 gacgactgctggcgctgcgaccccagctggtccgacaaccggcagcgcctggcggactgc 151
Query: 460 ggcatcggctttggccgcaacgccatcggcggccgtgacggcaagatctacgtggtcacc 519
| ||||||| |||||| | ||| ||||||| |||||||| ||||||||| |||
Sbjct: 152 gcggtcggcttcggccgcggctccaccggcggcaagaacggcaagtcctacgtggtgacc 211
Query: 520 gacccgagcgatgacg 535
||||| ||||| ||||
Sbjct: 212 gaccccagcgacgacg 227
>gb|CW266971.1|CW266971 104_737_11400437_148_35293_031 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11400437, DNA
sequence
Length = 670
Score = 48.1 bits (24), Expect = 0.001
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 647 tgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacatcg 694
||||||||| ||||||||||||||| || ||||| |||||||||||
Sbjct: 575 tgaacagctacaagaccatcgacgggcggggcgcgcgcgtgcacatcg 528
>gb|AC169370.3| Sorghum bicolor clone SB_BBc0011I20, WORKING DRAFT SEQUENCE, 9
unordered pieces
Length = 143922
Score = 48.1 bits (24), Expect = 0.001
Identities = 108/136 (79%)
Strand = Plus / Minus
Query: 400 gacgactgctggcgctgcgactcggactggcacaacaaccggaagcgcctcgccgactgt 459
||||||||||||||||||||| | |||| | |||||||| ||||||| || |||||
Sbjct: 48537 gacgactgctggcgctgcgaccccagctggtccgacaaccggcagcgcctggcggactgc 48478
Query: 460 ggcatcggctttggccgcaacgccatcggcggccgtgacggcaagatctacgtggtcacc 519
| ||||||| |||||| | ||| ||||||| |||||||| ||||||||| |||
Sbjct: 48477 gcggtcggcttcggccgcggctccaccggcggcaagaacggcaagtcctacgtggtgacc 48418
Query: 520 gacccgagcgatgacg 535
||||| ||||| ||||
Sbjct: 48417 gaccccagcgacgacg 48402
>gb|CW333051.1|CW333051 104_830_11481737_148_36039_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481737, DNA
sequence
Length = 629
Score = 42.1 bits (21), Expect = 0.079
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 498 cggcaagatctacgtggtcaccgacccgagcga 530
||||| |||||||||||| |||||||| |||||
Sbjct: 100 cggcaggatctacgtggtgaccgaccccagcga 132
Score = 40.1 bits (20), Expect = 0.31
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 657 caagaccatcgacggacgcggcgc 680
||||||||||||||| ||||||||
Sbjct: 265 caagaccatcgacgggcgcggcgc 288
>gb|CW445577.1|CW445577 fsbb001f170m17k0 Sorghum methylation filtered library (LibID:
104) Sorghum bicolor genomic clone fsbb001f170m17, DNA
sequence
Length = 604
Score = 42.1 bits (21), Expect = 0.079
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 2 gacatgttagatgcaacgaat 22
|||||||||||||||||||||
Sbjct: 89 gacatgttagatgcaacgaat 69
>gb|BZ344896.1|BZ344896 hr41f08.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hr41f08 5', DNA sequence
Length = 336
Score = 40.1 bits (20), Expect = 0.31
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 466 ggctttggccgcaacgccatcggcggcc 493
||||| |||||| |||||||||||||||
Sbjct: 291 ggcttcggccgccacgccatcggcggcc 264
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 204,040
Number of Sequences: 832831
Number of extensions: 204040
Number of successful extensions: 57299
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57250
Number of HSP's gapped (non-prelim): 47
length of query: 819
length of database: 491,359,669
effective HSP length: 20
effective length of query: 799
effective length of database: 474,703,049
effective search space: 379287736151
effective search space used: 379287736151
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)