BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750560.2.1
(660 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI246009.1|BI246009 IP1_66_E04.b1_A002 Immature pannicle... 801 0.0
gb|BG158803.1|BG158803 RHIZ2_44_E07.b1_A003 Rhizome2 (RHIZ2... 529 e-148
gb|BG355508.1|BG355508 EM1_17_C11.b1_A002 Embryo 1 (EM1) So... 438 e-121
gb|CD228392.1|CD228392 CCC1_7_C10.g1_A007 Callus culture/ce... 349 2e-094
gb|CL187199.1|CL187199 104_402_10900716_114_32431_038 Sorgh... 218 5e-055
gb|CW512591.1|CW512591 115_2_10510711_1_30019 Sorghum unfil... 218 5e-055
gb|BG053877.1|BG053877 RHIZ2_11_A06.b1_A003 Rhizome2 (RHIZ2... 157 2e-036
gb|CL187200.1|CL187200 104_402_10900716_116_32435_038 Sorgh... 115 5e-024
gb|CW227007.1|CW227007 104_665_11205188_148_37225_076 Sorgh... 115 5e-024
gb|CF432143.1|CF432143 NIT1_14_E09.g1_A002 Nitrogen-deficie... 113 2e-023
gb|BG159611.1|BG159611 OV2_6_G07.b1_A002 Ovary 2 (OV2) Sorg... 60 3e-007
gb|CN132560.1|CN132560 OX1_6_H08.g1_A002 Oxidatively-stress... 54 2e-005
gb|BZ781161.1|BZ781161 ii24f11.g1 WGS-SbicolorF (DH5a methy... 44 0.016
gb|CC059543.1|CC059543 ii24f11.b1 WGS-SbicolorF (DH5a methy... 44 0.016
gb|CL176668.1|CL176668 104_383_10893279_116_31773_111 Sorgh... 42 0.064
gb|CW052647.1|CW052647 104_292_10515599_114_30188 Sorghum m... 42 0.064
gb|CW052648.1|CW052648 104_292_10515599_114_30286 Sorghum m... 42 0.064
gb|CW052649.1|CW052649 104_292_10515599_115_30187 Sorghum m... 42 0.064
gb|CW052650.1|CW052650 104_292_10515599_115_30287 Sorghum m... 42 0.064
gb|BI140057.1|BI140057 IP1_49_D09.b1_A002 Immature pannicle... 42 0.064
gb|BI140442.1|BI140442 IP1_49_D09.b2_A002 Immature pannicle... 42 0.064
gb|CN145920.1|CN145920 WOUND1_36_E03.b1_A002 Wounded leaves... 42 0.064
gb|CD422915.1|CD422915 SA1_38_H02.g1_A002 Salicylic acid-tr... 40 0.25
>gb|BI246009.1|BI246009 IP1_66_E04.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 541
Score = 801 bits (404), Expect = 0.0
Identities = 468/488 (95%), Gaps = 1/488 (0%)
Strand = Plus / Plus
Query: 174 tgctctccagctgaattctgctcgcggctcgtctcggaggc-agcggagatggcgagcgc 232
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 1 tgctctccagctgaattctgctcgcggctcgtctcggaggccagcggagatggcggacgc 60
Query: 233 cggcgtggcgggctgctcagggagtgctggcgatgctttgttcagggaactctggcatgc 292
|||||||||| || || |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 61 cggcgtggcgcgcggcccagggagtgctggcgatgctctgttcagggaactctggcatgc 120
Query: 293 ttgtgctgggccgttggtcacagtgcctcgccaaggcgagctggtttactacttcccaca 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 121 ttgtgctgggccgttggtcacagtgcctcgccaaggcgagctggtttactacttcccgca 180
Query: 353 gggtcatatggaacagcttgaagcatctacagatcaacaacttgatcagcacttaccttt 412
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 181 gggtcatatggaacagcttgaagcatctacagatcaacaacttgatcagcacttacctct 240
Query: 413 gtttgatctaccacccaagattctctgcaaggtggtcaatgtagaacttagagctgaaac 472
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtttaatctaccacccaagatcctctgcaaggtggtcaatgtagaacttagagctgaaac 300
Query: 473 tgattctgatgaagtttatgctcaaattatgctgcaaccagaagcagatcaaagtgagcc 532
|||||| ||||||||||||||||| |||||||| ||||| |||||||| |||| ||||||
Sbjct: 301 tgattccgatgaagtttatgctcagattatgctacaacccgaagcagagcaaaatgagcc 360
Query: 533 caccagcccagattctgagccaccggagcctgaaagatgcaacgtctattccttctgcaa 592
||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 361 caccagcccagatgctgagccacccgagcctgaaagatgcaacgtccattccttctgcaa 420
Query: 593 gaccttgactgcttcagatacaagtacccatggtggattctctgtcctcaggaggcatgc 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gaccttgactgcttcagatacaagtacccatggtggattctctgtcctcaggaggcatgc 480
Query: 653 tgaagaat 660
||||||||
Sbjct: 481 tgaagaat 488
>gb|BG158803.1|BG158803 RHIZ2_44_E07.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 548
Score = 529 bits (267), Expect = e-148
Identities = 316/331 (95%), Gaps = 1/331 (0%)
Strand = Plus / Plus
Query: 191 ctgctcgcggctcgtctcggaggc-agcggagatggcgagcgccggcgtggcgggctgct 249
|||||||||||||||||||||||| ||||||||||||| ||||||||||||| || ||
Sbjct: 9 ctgctcgcggctcgtctcggaggccagcggagatggcggacgccggcgtggcgcgcggcc 68
Query: 250 cagggagtgctggcgatgctttgttcagggaactctggcatgcttgtgctgggccgttgg 309
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 69 cagggagtgctggcgatgctctgttcagggaactctggcatgcttgtgctgggccgttgg 128
Query: 310 tcacagtgcctcgccaaggcgagctggtttactacttcccacagggtcatatggaacagc 369
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 129 tcacagtgcctcgccaaggcgagctggtttactacttcccgcagggtcatatggaacagc 188
Query: 370 ttgaagcatctacagatcaacaacttgatcagcacttacctttgtttgatctaccaccca 429
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 189 ttgaagcatctacagatcaacaacttgatcagcacttacctctgtttaatctaccaccca 248
Query: 430 agattctctgcaaggtggtcaatgtagaacttagagctgaaactgattctgatgaagttt 489
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 249 agatcctctgcaaggtggtcaatgtagaacttagagctgaaactgattccgatgaagttt 308
Query: 490 atgctcaaattatgctgcaaccagaagcaga 520
||||||| |||||||| ||||| ||||||||
Sbjct: 309 atgctcagattatgctacaacccgaagcaga 339
>gb|BG355508.1|BG355508 EM1_17_C11.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 524
Score = 438 bits (221), Expect = e-121
Identities = 255/265 (96%), Gaps = 1/265 (0%)
Strand = Plus / Plus
Query: 170 tcggtgctctccagctgaattctgctcgcggctcgtctcggaggc-agcggagatggcga 228
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 256 tcggtgctctccagctgaattctgctcgcggctcgtctcggaggccagcggagatggcgg 315
Query: 229 gcgccggcgtggcgggctgctcagggagtgctggcgatgctttgttcagggaactctggc 288
||||||||||||| || || |||||||||||||||||||| ||||||||||||||||||
Sbjct: 316 acgccggcgtggcgcgcggcccagggagtgctggcgatgctctgttcagggaactctggc 375
Query: 289 atgcttgtgctgggccgttggtcacagtgcctcgccaaggcgagctggtttactacttcc 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 atgcttgtgctgggccgttggtcacagtgcctcgccaaggcgagctggtttactacttcc 435
Query: 349 cacagggtcatatggaacagcttgaagcatctacagatcaacaacttgatcagcacttac 408
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 cgcagggtcatatggaacagcttgaagcatctacagatcaacaacttgatcagcacttac 495
Query: 409 ctttgtttgatctaccacccaagat 433
|| ||||| ||||||||||||||||
Sbjct: 496 ctctgtttaatctaccacccaagat 520
Score = 99.6 bits (50), Expect = 3e-019
Identities = 86/97 (88%), Gaps = 2/97 (2%)
Strand = Plus / Plus
Query: 77 ccgccgaggctcggctcccgtccgcagccaccacgtgcgacctcccctcccctgttcctg 136
|||||||| ||||||||||||||||||| ||||||||||| || ||||||| |||||
Sbjct: 153 ccgccgagcctcggctcccgtccgcagcagccacgtgcgacgacc--tcccctgctcctg 210
Query: 137 agaatctccgtaggtcggcatggggtgaccagatcgg 173
||||||| || || |||||||||||||||||||||||
Sbjct: 211 agaatctgcggagctcggcatggggtgaccagatcgg 247
>gb|CD228392.1|CD228392 CCC1_7_C10.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_7_C10_A007 5', mRNA sequence
Length = 595
Score = 349 bits (176), Expect = 2e-094
Identities = 204/212 (96%), Gaps = 1/212 (0%)
Strand = Plus / Plus
Query: 170 tcggtgctctccagctgaattctgctcgcggctcgtctcggaggc-agcggagatggcga 228
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 282 tcggtgctctccagctgaattctgctcgcggctcgtctcggaggccagcggagatggcgg 341
Query: 229 gcgccggcgtggcgggctgctcagggagtgctggcgatgctttgttcagggaactctggc 288
||||||||||||| || || |||||||||||||||||||| ||||||||||||||||||
Sbjct: 342 acgccggcgtggcgcgcggcccagggagtgctggcgatgctctgttcagggaactctggc 401
Query: 289 atgcttgtgctgggccgttggtcacagtgcctcgccaaggcgagctggtttactacttcc 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 atgcttgtgctgggccgttggtcacagtgcctcgccaaggcgagctggtttactacttcc 461
Query: 349 cacagggtcatatggaacagcttgaagcatct 380
| ||||||||||||||||||||||||||||||
Sbjct: 462 cgcagggtcatatggaacagcttgaagcatct 493
Score = 99.6 bits (50), Expect = 3e-019
Identities = 86/97 (88%), Gaps = 2/97 (2%)
Strand = Plus / Plus
Query: 77 ccgccgaggctcggctcccgtccgcagccaccacgtgcgacctcccctcccctgttcctg 136
|||||||| ||||||||||||||||||| ||||||||||| || ||||||| |||||
Sbjct: 179 ccgccgagcctcggctcccgtccgcagcagccacgtgcgacgacc--tcccctgctcctg 236
Query: 137 agaatctccgtaggtcggcatggggtgaccagatcgg 173
||||||| || || |||||||||||||||||||||||
Sbjct: 237 agaatctgcggagctcggcatggggtgaccagatcgg 273
>gb|CL187199.1|CL187199 104_402_10900716_114_32431_038 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10900716, DNA
sequence
Length = 781
Score = 218 bits (110), Expect = 5e-055
Identities = 116/118 (98%)
Strand = Plus / Minus
Query: 251 agggagtgctggcgatgctttgttcagggaactctggcatgcttgtgctgggccgttggt 310
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 agggagtgctggcgatgctctgttcagggaactctggcatgcttgtgctgggccgttggt 86
Query: 311 cacagtgcctcgccaaggcgagctggtttactacttcccacagggtcatatggaacag 368
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 85 cacagtgcctcgccaaggcgagctggtttactacttcccgcagggtcatatggaacag 28
>gb|CW512591.1|CW512591 115_2_10510711_1_30019 Sorghum unfiltered library (LibID: 115)
Sorghum bicolor genomic clone 10510711, DNA sequence
Length = 652
Score = 218 bits (110), Expect = 5e-055
Identities = 116/118 (98%)
Strand = Plus / Plus
Query: 251 agggagtgctggcgatgctttgttcagggaactctggcatgcttgtgctgggccgttggt 310
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 agggagtgctggcgatgctctgttcagggaactctggcatgcttgtgctgggccgttggt 142
Query: 311 cacagtgcctcgccaaggcgagctggtttactacttcccacagggtcatatggaacag 368
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 143 cacagtgcctcgccaaggcgagctggtttactacttcccgcagggtcatatggaacag 200
Score = 172 bits (87), Expect = 3e-041
Identities = 96/99 (96%)
Strand = Plus / Plus
Query: 367 agcttgaagcatctacagatcaacaacttgatcagcacttacctttgtttgatctaccac 426
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 388 agcttgaagcatctacagatcaacaacttgatcagcacttacctctgtttaatctaccac 447
Query: 427 ccaagattctctgcaaggtggtcaatgtagaacttagag 465
||||||| |||||||||||||||||||||||||||||||
Sbjct: 448 ccaagatcctctgcaaggtggtcaatgtagaacttagag 486
Score = 79.8 bits (40), Expect = 3e-013
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 465 gctgaaactgattctgatgaagtttatgctcaaattatgctgcaaccagaagcaga 520
|||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||
Sbjct: 571 gctgaaactgattccgatgaagtttatgctcagattatgctacaacccgaagcaga 626
>gb|BG053877.1|BG053877 RHIZ2_11_A06.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 117
Score = 157 bits (79), Expect = 2e-036
Identities = 104/111 (93%), Gaps = 1/111 (0%)
Strand = Plus / Plus
Query: 253 ggagtgctggcgatgctttgttcagggaactctggcatgcttgtgctgggccgttggtca 312
||||||||||||||||| ||| || |||||||||| ||||||||||||||||||||||||
Sbjct: 8 ggagtgctggcgatgctctgt-cacggaactctggtatgcttgtgctgggccgttggtca 66
Query: 313 cagtgcctcgccaaggcgagctggtttactacttcccacagggtcatatgg 363
|||||||||||||||||||||||| |||||||||||| || ||||||||||
Sbjct: 67 cagtgcctcgccaaggcgagctggcttactacttcccgcacggtcatatgg 117
>gb|CL187200.1|CL187200 104_402_10900716_116_32435_038 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10900716, DNA
sequence
Length = 677
Score = 115 bits (58), Expect = 5e-024
Identities = 71/74 (95%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 170 tcggtgctctccagctgaattctgctcgcggctcgtctcggagg-cagcggagatggcga 228
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 76 tcggtgctctccagctgaattctgctcgcggctcgtctcggaggccagcggagatggcgg 135
Query: 229 gcgccggcgtggcg 242
|||||||||||||
Sbjct: 136 acgccggcgtggcg 149
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 151 tcggcatggggtgaccagatcgg 173
|||||||||||||||||||||||
Sbjct: 45 tcggcatggggtgaccagatcgg 67
>gb|CW227007.1|CW227007 104_665_11205188_148_37225_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11205188, DNA
sequence
Length = 618
Score = 115 bits (58), Expect = 5e-024
Identities = 71/74 (95%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 170 tcggtgctctccagctgaattctgctcgcggctcgtctcggagg-cagcggagatggcga 228
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 487 tcggtgctctccagctgaattctgctcgcggctcgtctcggaggccagcggagatggcgg 546
Query: 229 gcgccggcgtggcg 242
|||||||||||||
Sbjct: 547 acgccggcgtggcg 560
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 77 ccgccgaggctcggctcccgtccgcagccaccacgtgcgac 117
|||||||| ||||||||||||||||||| |||||||||||
Sbjct: 271 ccgccgagcctcggctcccgtccgcagcagccacgtgcgac 311
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 151 tcggcatggggtgaccagatcgg 173
|||||||||||||||||||||||
Sbjct: 456 tcggcatggggtgaccagatcgg 478
>gb|CF432143.1|CF432143 NIT1_14_E09.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_14_E09_A002 5', mRNA sequence
Length = 305
Score = 113 bits (57), Expect = 2e-023
Identities = 156/189 (82%)
Strand = Plus / Plus
Query: 472 ctgattctgatgaagtttatgctcaaattatgctgcaaccagaagcagatcaaagtgagc 531
||||||| |||||||||||||||||||||||| ||||||||||||| ||||||| || |
Sbjct: 17 ctgattcagatgaagtttatgctcaaattatgttgcaaccagaagctgatcaaaacgaac 76
Query: 532 ccaccagcccagattctgagccaccggagcctgaaagatgcaacgtctattccttctgca 591
|||||||| || |||| |||| || ||||||| ||||| | | ||||||||||||
Sbjct: 77 tcaccagcctggaccctgaaccacaagaacctgaaaaatgcactgcccattccttctgca 136
Query: 592 agaccttgactgcttcagatacaagtacccatggtggattctctgtcctcaggaggcatg 651
|||| |||| ||||||||||| || || || || || || ||||| || |||||||||
Sbjct: 137 agacactgacagcttcagatacgagcactcacggcggtttttctgttcttcggaggcatg 196
Query: 652 ctgaagaat 660
|||||||||
Sbjct: 197 ctgaagaat 205
>gb|BG159611.1|BG159611 OV2_6_G07.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 484
Score = 60.0 bits (30), Expect = 3e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 584 cttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgt 637
|||||||||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct: 245 cttctgcaagacgttgactgcaagtgatacgagtacccatggtggattctctgt 298
>gb|CN132560.1|CN132560 OX1_6_H08.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_6_H08_A002 5', mRNA sequence
Length = 733
Score = 54.0 bits (27), Expect = 2e-005
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 285 tggcatgcttgtgctgggccgttggtcacagtgcctcgccaaggcgagctggtttactac 344
|||||||| ||||| || |||||||||||||| ||| | |||||||||| || || |||
Sbjct: 661 tggcatgcgtgtgccggcccgttggtcacagtacctagacaaggcgagcgcgtctattac 720
Query: 345 ttcccacaggg 355
||||| |||||
Sbjct: 721 ttcccccaggg 731
>gb|BZ781161.1|BZ781161 ii24f11.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ii24f11, DNA sequence
Length = 597
Score = 44.1 bits (22), Expect = 0.016
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 612 acaagtacccatggtggattctctgt 637
||||||||||||||||| ||||||||
Sbjct: 474 acaagtacccatggtgggttctctgt 499
>gb|CC059543.1|CC059543 ii24f11.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ii24f11, DNA sequence
Length = 722
Score = 44.1 bits (22), Expect = 0.016
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 612 acaagtacccatggtggattctctgt 637
||||||||||||||||| ||||||||
Sbjct: 422 acaagtacccatggtgggttctctgt 397
>gb|CL176668.1|CL176668 104_383_10893279_116_31773_111 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10893279, DNA
sequence
Length = 675
Score = 42.1 bits (21), Expect = 0.064
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 585 ttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgt 637
||||||||||| | || ||||| |||||||| || ||||| |||||||||||
Sbjct: 264 ttctgcaagacactcacagcttctgatacaagcactcatgggggattctctgt 316
>gb|CW052647.1|CW052647 104_292_10515599_114_30188 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515599, DNA
sequence
Length = 666
Score = 42.1 bits (21), Expect = 0.064
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 585 ttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgt 637
||||||||||| | || ||||| |||||||| || ||||| |||||||||||
Sbjct: 505 ttctgcaagacactcacagcttctgatacaagcactcatgggggattctctgt 453
>gb|CW052648.1|CW052648 104_292_10515599_114_30286 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515599, DNA
sequence
Length = 694
Score = 42.1 bits (21), Expect = 0.064
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 585 ttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgt 637
||||||||||| | || ||||| |||||||| || ||||| |||||||||||
Sbjct: 505 ttctgcaagacactcacagcttctgatacaagcactcatgggggattctctgt 453
>gb|CW052649.1|CW052649 104_292_10515599_115_30187 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515599, DNA
sequence
Length = 584
Score = 42.1 bits (21), Expect = 0.064
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 585 ttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgt 637
||||||||||| | || ||||| |||||||| || ||||| |||||||||||
Sbjct: 271 ttctgcaagacactcacagcttctgatacaagcactcatgggggattctctgt 323
>gb|CW052650.1|CW052650 104_292_10515599_115_30287 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515599, DNA
sequence
Length = 597
Score = 42.1 bits (21), Expect = 0.064
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 585 ttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgt 637
||||||||||| | || ||||| |||||||| || ||||| |||||||||||
Sbjct: 271 ttctgcaagacactcacagcttctgatacaagcactcatgggggattctctgt 323
>gb|BI140057.1|BI140057 IP1_49_D09.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 477
Score = 42.1 bits (21), Expect = 0.064
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 585 ttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgt 637
||||||||||| | || ||||| |||||||| || ||||| |||||||||||
Sbjct: 189 ttctgcaagacactcacagcttctgatacaagcactcatgggggattctctgt 241
>gb|BI140442.1|BI140442 IP1_49_D09.b2_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 474
Score = 42.1 bits (21), Expect = 0.064
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 585 ttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgt 637
||||||||||| | || ||||| |||||||| || ||||| |||||||||||
Sbjct: 189 ttctgcaagacactcacagcttctgatacaagcactcatgggggattctctgt 241
>gb|CN145920.1|CN145920 WOUND1_36_E03.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_36_E03_A002 3', mRNA sequence
Length = 812
Score = 42.1 bits (21), Expect = 0.064
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 218 ggagatggcgagcgccggcgtggcg 242
|||||||| ||||||||||||||||
Sbjct: 419 ggagatggagagcgccggcgtggcg 443
>gb|CD422915.1|CD422915 SA1_38_H02.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_38_H02_A002 5', mRNA sequence
Length = 657
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 26 cctccagagctccccgcctg 45
||||||||||||||||||||
Sbjct: 167 cctccagagctccccgcctg 148
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 181,982
Number of Sequences: 832831
Number of extensions: 181982
Number of successful extensions: 51711
Number of sequences better than 0.5: 23
Number of HSP's better than 0.5 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51662
Number of HSP's gapped (non-prelim): 38
length of query: 660
length of database: 491,359,669
effective HSP length: 19
effective length of query: 641
effective length of database: 475,535,880
effective search space: 304818499080
effective search space used: 304818499080
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)