BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750436.2.1
(656 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF587811.1|BF587811 FM1_40_G12.g1_A003 Floral-Induced Me... 763 0.0
gb|BE918387.1|BE918387 OV1_3_A02.g1_A002 Ovary 1 (OV1) Sorg... 680 0.0
gb|CW288695.1|CW288695 104_767_11412087_116_35543_060 Sorgh... 678 0.0
gb|BF588366.1|BF588366 FM1_40_G12.b1_A003 Floral-Induced Me... 672 0.0
gb|CW028654.1|CW028654 104_255_10499222_116_30393 Sorghum m... 553 e-156
gb|CW206373.1|CW206373 104_635_11187557_148_36963_029 Sorgh... 549 e-154
gb|CW399305.1|CW399305 fsbb001f089b15f0 Sorghum methylation... 385 e-105
gb|BZ346591.1|BZ346591 hv20g12.b1 WGS-SbicolorF (JM107 adap... 143 2e-032
gb|BZ351272.1|BZ351272 hv20g12.g1 WGS-SbicolorF (JM107 adap... 143 2e-032
gb|CW028653.1|CW028653 104_255_10499222_114_30394 Sorghum m... 105 5e-021
gb|CW060871.1|CW060871 104_304_10520092_114_30143 Sorghum m... 74 2e-011
gb|CW217464.1|CW217464 104_650_11195670_116_37132_019 Sorgh... 74 2e-011
gb|CW217465.1|CW217465 104_650_11195670_148_37131_019 Sorgh... 74 2e-011
gb|CW471098.1|CW471098 fsbb001f224m06k0 Sorghum methylation... 74 2e-011
gb|CW273361.1|CW273361 104_745_11403854_148_35359_049 Sorgh... 62 7e-008
gb|CW273362.1|CW273362 104_745_11403854_148_35717_049 Sorgh... 62 7e-008
gb|CW178892.1|CW178892 104_592_11159808_116_36621_084 Sorgh... 58 1e-006
gb|BZ691149.1|BZ691149 SP__Ba0002O10.r SP__Ba Sorghum propi... 48 0.001
gb|CW784754.1|CW784754 SP__Ba0002O10.r SP__Ba Sorghum propi... 48 0.001
gb|CL194980.1|CL194980 104_420_10942034_116_32305_015 Sorgh... 44 0.016
gb|CW031503.1|CW031503 104_260_10500849_115_30366 Sorghum m... 44 0.016
gb|CW161910.1|CW161910 104_569_11150660_116_36441_080 Sorgh... 44 0.016
gb|CW161911.1|CW161911 104_569_11150660_148_36442_080 Sorgh... 44 0.016
gb|CW337324.1|CW337324 104_837_11484098_116_36117_013 Sorgh... 44 0.016
gb|CW355444.1|CW355444 fsbb001f020b06k0 Sorghum methylation... 44 0.016
gb|CW432597.1|CW432597 fsbb001f147g08k0 Sorghum methylation... 44 0.016
gb|CD226270.1|CD226270 CCC1_44_F10.g1_A007 Callus culture/c... 44 0.016
gb|BG933290.1|BG933290 WS1_92_F03.g1_A002 Water-stressed 1 ... 42 0.063
gb|CF772813.1|CF772813 DSBF1_39_G01.g1_A010 Drought-stresse... 42 0.063
gb|CN126431.1|CN126431 RHOH1_17_D03.b1_A002 Acid- and alkal... 42 0.063
gb|CW140005.1|CW140005 104_530_11135549_148_34918_025 Sorgh... 40 0.25
gb|CW244204.1|CW244204 104_705_11220467_116_37589_048 Sorgh... 40 0.25
gb|CD209494.1|CD209494 HS1_42_B06.g1_A012 Heat-shocked seed... 40 0.25
>gb|BF587811.1|BF587811 FM1_40_G12.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 654
Score = 763 bits (385), Expect = 0.0
Identities = 520/560 (92%), Gaps = 9/560 (1%)
Strand = Plus / Minus
Query: 105 gaaacattcatgctcaaattaacgaatactgaatcgaacaagacaagacacaaccgcaga 164
|||||||||| |||||||||||| ||||| |||| ||||| || |||||||||||||||
Sbjct: 628 gaaacattcaggctcaaattaacaaatacgaaatcaaacaacacgagacacaaccgcaga 569
Query: 165 gtgtcctgatcattagaacccccaatcccacccatcggatcgaattggaacccctcattt 224
||||||||||||||||||||||| | ||||| || ||||||||||| |||||||||||||
Sbjct: 568 gtgtcctgatcattagaacccccca-cccacacagcggatcgaattcgaacccctcattt 510
Query: 225 cattt---cacaa-ttcacaaccccgg-cgttgttcctcccatcacaactcgatca---c 276
||| ||||| ||||||||||||| |||||||| ||| ||||||||||||||| |
Sbjct: 509 ttttttttcacaaattcacaaccccggtcgttgttcatccaatcacaactcgatcaagac 450
Query: 277 ctcctgaggctggtggcgattggcacgatgacaagcaggacgaggagcagcaggattatg 336
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct: 449 ctcctgaggctggtggcgatgggcacgatgacgagcaggacgaggagcagcaggatgatg 390
Query: 337 atgccgatgcagagacacttgcggctgcttctctggtactccttggccttgcccagctcc 396
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 389 atgccgatgcagagacacttgcggctgctccgttggtactccttggccttgcccagctcc 330
Query: 397 ttgttgccgccctgcacgtagtgggaggcgttggcgacgtggctctcgatgtcgtcgagc 456
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ttgttgccgctctgcacgtagtgggaggcgttggcgacgtggctctcgatgtcgtcgagc 270
Query: 457 ttctccccctgcgtctccaccatgacggccatgtcgaggaacacttggtggagctccagg 516
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 269 ttctccccctgcatctccaccatgacggccatgtcgaggaacacctggtggagctccagg 210
Query: 517 aggctgcgttccacctcgcgcgccgcgtcacggcggncctggatctcgtgcaccgcggcg 576
|||||||| |||||||||||||||||||| ||| | |||||||||||||||||||||||
Sbjct: 209 aggctgcgctccacctcgcgcgccgcgtcgtggcagtcctggatctcgtgcaccgcggcg 150
Query: 577 agcacggcgcccttgccgtgctccgcgacagcggcgcccaggagctcctcgccgcggtcg 636
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 149 agcacggcgcccttgccgtgctccgcgacggcggcgcccaggagctcctcgccgcggccg 90
Query: 637 tcggagatgatgcgctcgat 656
||||||||||||||||||||
Sbjct: 89 tcggagatgatgcgctcgat 70
>gb|BE918387.1|BE918387 OV1_3_A02.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 680
Score = 680 bits (343), Expect = 0.0
Identities = 408/428 (95%), Gaps = 4/428 (0%)
Strand = Plus / Minus
Query: 233 aattcacaaccccgg-cgttgttcctcccatcacaactcgatca---cctcctgaggctg 288
||||||||||||||| |||||||| ||| ||||||||||||||| |||||||||||||
Sbjct: 648 aattcacaaccccggtcgttgttcatccaatcacaactcgatcaagacctcctgaggctg 589
Query: 289 gtggcgattggcacgatgacaagcaggacgaggagcagcaggattatgatgccgatgcag 348
|||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 588 gtggcgatgggcacgatgacgagcaggacgaggagcagcaggatgatgatgccgatgcag 529
Query: 349 agacacttgcggctgcttctctggtactccttggccttgcccagctccttgttgccgccc 408
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
Sbjct: 528 agacacttgcggctgctccgctggtactccttggccttgcccagctccttgttgccgctc 469
Query: 409 tgcacgtagtgggaggcgttggcgacgtggctctcgatgtcgtcgagcttctccccctgc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tgcacgtagtgggaggcgttggcgacgtggctctcgatgtcgtcgagcttctccccctgc 409
Query: 469 gtctccaccatgacggccatgtcgaggaacacttggtggagctccaggaggctgcgttcc 528
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 408 atctccaccatgacggccatgtcgaggaacacctggtggagctccaggaggctgcgctcc 349
Query: 529 acctcgcgcgccgcgtcacggcggncctggatctcgtgcaccgcggcgagcacggcgccc 588
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 348 acctcgcgcgccgcgtcgtggcggtcctggatctcgtgcaccgcggcgagcacggcgccc 289
Query: 589 ttgccgtgctccgcgacagcggcgcccaggagctcctcgccgcggtcgtcggagatgatg 648
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 288 ttgccgtgctccgcgacggcggcgcccaggagctcctcgccgcggccgtcggagatgatg 229
Query: 649 cgctcgat 656
||||||||
Sbjct: 228 cgctcgat 221
>gb|CW288695.1|CW288695 104_767_11412087_116_35543_060 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11412087, DNA
sequence
Length = 499
Score = 678 bits (342), Expect = 0.0
Identities = 462/497 (92%), Gaps = 9/497 (1%)
Strand = Plus / Plus
Query: 127 cgaatactgaatcgaacaagacaagacacaaccgcagagtgtcctgatcattagaacccc 186
||||||| |||| ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgaatacgaaatcaaacaacacgagacacaaccgcagagtgtcctgatcattagaacccc 60
Query: 187 caatcccacccatcggatcgaattggaacccctcatttca---tttcacaa-ttcacaac 242
| | ||||| || ||||||||||| ||||||||||||| |||||||| ||||||||
Sbjct: 61 cca-cccacacagcggatcgaattcgaacccctcatttttgtttttcacaaattcacaac 119
Query: 243 cccgg-cgttgttcctcccatcacaactcgatca---cctcctgaggctggtggcgattg 298
||||| |||||||| ||| ||||||||||||||| ||||||||||||||||||||| |
Sbjct: 120 cccggtcgttgttcatccaatcacaactcgatcaagacctcctgaggctggtggcgatgg 179
Query: 299 gcacgatgacaagcaggacgaggagcagcaggattatgatgccgatgcagagacacttgc 358
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 180 gcacgatgacgagcaggacgaggagcagcaggatgatgatgccgatgcagagacacttgc 239
Query: 359 ggctgcttctctggtactccttggccttgcccagctccttgttgccgccctgcacgtagt 418
||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 240 ggctgctccgctggtactccttggccttgcccagctccttgttgccgctctgcacgtagt 299
Query: 419 gggaggcgttggcgacgtggctctcgatgtcgtcgagcttctccccctgcgtctccacca 478
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 300 gggaggcgttggcgacgtggctctcgatgtcgtcgagcttctccccctgcatctccacca 359
Query: 479 tgacggccatgtcgaggaacacttggtggagctccaggaggctgcgttccacctcgcgcg 538
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 360 tgacggccatgtcgaggaacacctggtggagctccaggaggctgcgctccacctcgcgcg 419
Query: 539 ccgcgtcacggcggncctggatctcgtgcaccgcggcgagcacggcgcccttgccgtgct 598
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ccgcgtcgtggcggtcctggatctcgtgcaccgcggcgagcacggcgcccttgccgtgct 479
Query: 599 ccgcgacagcggcgccc 615
||||||| |||||||||
Sbjct: 480 ccgcgacggcggcgccc 496
>gb|BF588366.1|BF588366 FM1_40_G12.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 552
Score = 672 bits (339), Expect = 0.0
Identities = 443/474 (93%), Gaps = 8/474 (1%)
Strand = Plus / Minus
Query: 191 cccacccatcggatcgaattggaacccctcatttcattt---cacaa-ttcacaaccccg 246
||||| || ||||||||||| ||||||||||||| ||| ||||| ||||||||||||
Sbjct: 543 cccacacagcggatcgaattcgaacccctcatttttttttttcacaaattcacaaccccg 484
Query: 247 g-cgttgttcctcccatcacaactcgatca---cctcctgaggctggtggcgattggcac 302
| |||||||| ||| ||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 483 gtcgttgttcatccaatcacaactcgatcaagacctcctgaggctggtggcgatgggcac 424
Query: 303 gatgacaagcaggacgaggagcagcaggattatgatgccgatgcagagacacttgcggct 362
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 423 gatgacgagcaggacgaggagcagcaggatgatgatgccgatgcagagacacttgcggct 364
Query: 363 gcttctctggtactccttggccttgcccagctccttgttgccgccctgcacgtagtggga 422
||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 363 gctccgttggtactccttggccttgcccagctccttgttgccgctctgcacgtagtggga 304
Query: 423 ggcgttggcgacgtggctctcgatgtcgtcgagcttctccccctgcgtctccaccatgac 482
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 303 ggcgttggcgacgtggctctcgatgtcgtcgagcttctccccctgcatctccaccatgac 244
Query: 483 ggccatgtcgaggaacacttggtggagctccaggaggctgcgttccacctcgcgcgccgc 542
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 243 ggccatgtcgaggaacacctggtggagctccaggaggctgcgctccacctcgcgcgccgc 184
Query: 543 gtcacggcggncctggatctcgtgcaccgcggcgagcacggcgcccttgccgtgctccgc 602
||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 gtcgtggcagtcctggatctcgtgcaccgcggcgagcacggcgcccttgccgtgctccgc 124
Query: 603 gacagcggcgcccaggagctcctcgccgcggtcgtcggagatgatgcgctcgat 656
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 123 gacggcggcgcccaggagctcctcgccgcggccgtcggagatgatgcgctcgat 70
>gb|CW028654.1|CW028654 104_255_10499222_116_30393 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10499222, DNA
sequence
Length = 830
Score = 553 bits (279), Expect = e-156
Identities = 320/334 (95%)
Strand = Plus / Minus
Query: 323 gcagcaggattatgatgccgatgcagagacacttgcggctgcttctctggtactccttgg 382
|||||||||| |||||||||||||||||||||||||||||||| | ||||||||| | ||
Sbjct: 830 gcagcaggatgatgatgccgatgcagagacacttgcggctgctccgctggtactcttggg 771
Query: 383 ccttgcccagctccttgttgccgccctgcacgtagtgggaggcgttggcgacgtggctct 442
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 770 ccttgcccagctccttgttgccgctctgcacgtagtgggaggcgttggcgacgtggctct 711
Query: 443 cgatgtcgtcgagcttctccccctgcgtctccaccatgacggccatgtcgaggaacactt 502
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 710 cgatgtcgtcgagcttctccccctgcatctccaccatgacggccatgtcgaggaacacct 651
Query: 503 ggtggagctccaggaggctgcgttccacctcgcgcgccgcgtcacggcggncctggatct 562
|||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||
Sbjct: 650 ggtggagctccaggaggctgcgctccacctcgcgcgccgcgtcgtggcggtcctggatct 591
Query: 563 cgtgcaccgcggcgagcacggcgcccttgccgtgctccgcgacagcggcgcccaggagct 622
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 590 cgtgcaccgcggcgagcacggcgcccttgccgtgctccgcgacggcggcgcccaggagct 531
Query: 623 cctcgccgcggtcgtcggagatgatgcgctcgat 656
||||||||||| ||||||||||||||||||||||
Sbjct: 530 cctcgccgcggccgtcggagatgatgcgctcgat 497
>gb|CW206373.1|CW206373 104_635_11187557_148_36963_029 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187557, DNA
sequence
Length = 561
Score = 549 bits (277), Expect = e-154
Identities = 346/366 (94%), Gaps = 5/366 (1%)
Strand = Plus / Minus
Query: 233 aattcacaaccccgg-cgttgttcctcccatcacaactcgatca---cctcctgaggctg 288
||||||||||||||| |||||||| ||| ||||||||||||||| |||||||||||||
Sbjct: 366 aattcacaaccccggtcgttgttcatccaatcacaactcgatcaagacctcctgaggctg 307
Query: 289 gtggcgattggcacgatgacaagcaggacgaggagcagcaggattatgatgccgatgcag 348
|||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 306 gtggcgatgggcacgatgacgagcaggacgaggagcagcaggatgatgatgccgatgcag 247
Query: 349 agacacttgcggctgcttctctggtactccttggccttgcccagctccttgttgccgccc 408
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
Sbjct: 246 agacacttgcggctgctccgctggtactccttggccttgcccagctccttgttgccgctc 187
Query: 409 tgcacgtagtgggaggcgttggcgacgtggctctcgatgtcgtcgagcttctccccctgc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 tgcacgtagtgggaggcgttggcgacgtggctctcgatgtcgtcgagcttctccccctgc 127
Query: 469 gtctccaccatgacggccatgtcgaggaacacttggtggagctccaggaggctgcgttcc 528
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||
Sbjct: 126 atctccaccatgacggccatgtcgagaaacacctggtggagctccaggaggctgcgctcc 67
Query: 529 acctcgcgcgccgcgtcacggcggncctggatctcgtg-caccgcggcgagcacggcgcc 587
||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 66 acctcgcgcgccgcgtcgtggcggtcctggatctcgtgacaccgcggcgagcacggcgcc 7
Query: 588 cttgcc 593
||||||
Sbjct: 6 cttgcc 1
Score = 117 bits (59), Expect = 1e-024
Identities = 95/106 (89%), Gaps = 1/106 (0%)
Strand = Plus / Minus
Query: 105 gaaacattcatgctcaaattaacgaatactgaatcgaacaagacaagacacaaccgcaga 164
|||||||||| |||||||||||||||||| |||| ||||| || ||||||| |||||||
Sbjct: 497 gaaacattcaggctcaaattaacgaatacgaaatcaaacaacacgagacacanccgcaga 438
Query: 165 gtgtcctgatcattagaacccccaatcccacccatcggatcgaatt 210
||||||||||||||||||||||| | ||||| || |||||||||||
Sbjct: 437 gtgtcctgatcattagaacccccca-cccacacagcggatcgaatt 393
>gb|CW399305.1|CW399305 fsbb001f089b15f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f089b15, DNA
sequence
Length = 239
Score = 385 bits (194), Expect = e-105
Identities = 224/234 (95%)
Strand = Plus / Plus
Query: 275 acctcctgaggctggtggcgattggcacgatgacaagcaggacgaggagcagcaggatta 334
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct: 6 acctcctgaggctggtggcgatgggcacgatgacgagcaggacgaggagcagcaggatga 65
Query: 335 tgatgccgatgcagagacacttgcggctgcttctctggtactccttggccttgcccagct 394
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 66 tgatgccgatgcagagacacttgcggctgctccgctggtactccttggccttgcccagct 125
Query: 395 ccttgttgccgccctgcacgtagtgggaggcgttggcgacgtggctctcgatgtcgtcga 454
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 ccttgttgccgctctgcacgtagtgggaggcgttggcgacgtggctctcgatgtcgtcga 185
Query: 455 gcttctccccctgcgtctccaccatgacggccatgtcgaggaacacttggtgga 508
|||||||||||||| |||||||||||||||||||| | |||||||| |||||||
Sbjct: 186 gcttctccccctgcatctccaccatgacggccatggccaggaacacctggtgga 239
>gb|BZ346591.1|BZ346591 hv20g12.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hv20g12 5', DNA sequence
Length = 574
Score = 143 bits (72), Expect = 2e-032
Identities = 109/120 (90%), Gaps = 1/120 (0%)
Strand = Plus / Minus
Query: 105 gaaacattcatgctcaaattaacgaatactgaatcgaacaagacaagacacaaccgcaga 164
|||||||||| |||||||||||||||||| |||| ||||| || |||||||||||||||
Sbjct: 137 gaaacattcaggctcaaattaacgaatacgaaatcaaacaacacgagacacaaccgcaga 78
Query: 165 gtgtcctgatcattagaacccccaatcccacccatcggatcgaattggaacccctcattt 224
||||||||||||||||||||||| | ||||| || ||||||||||| |||||||||||||
Sbjct: 77 gtgtcctgatcattagaacccccca-cccacacagcggatcgaattcgaacccctcattt 19
>gb|BZ351272.1|BZ351272 hv20g12.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hv20g12 5', DNA sequence
Length = 619
Score = 143 bits (72), Expect = 2e-032
Identities = 109/120 (90%), Gaps = 1/120 (0%)
Strand = Plus / Plus
Query: 105 gaaacattcatgctcaaattaacgaatactgaatcgaacaagacaagacacaaccgcaga 164
|||||||||| |||||||||||||||||| |||| ||||| || |||||||||||||||
Sbjct: 500 gaaacattcaggctcaaattaacgaatacgaaatcaaacaacacgagacacaaccgcaga 559
Query: 165 gtgtcctgatcattagaacccccaatcccacccatcggatcgaattggaacccctcattt 224
||||||||||||||||||||||| | ||||| || ||||||||||| |||||||||||||
Sbjct: 560 gtgtcctgatcattagaacccccca-cccacacagcggatcgaattcgaacccctcattt 618
>gb|CW028653.1|CW028653 104_255_10499222_114_30394 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10499222, DNA
sequence
Length = 954
Score = 105 bits (53), Expect = 5e-021
Identities = 105/120 (87%), Gaps = 3/120 (2%)
Strand = Plus / Plus
Query: 105 gaaacattcatgctcaaattaacgaatactgaatcgaacaagacaagacacaaccgcaga 164
|||||||||| |||||||||||||||||| || |||| || |||||||||||||||
Sbjct: 838 gaaacattcaggctcaaattaacgaatacgaaaatcaacac-acgagacacaaccgcaga 896
Query: 165 gtgtcctgatcattagaacccccaatcccacccatcggatcgaattggaacccctcattt 224
||||||||||||||||||||||| | |||| || ||||||||||| |||||||||||||
Sbjct: 897 gtgtcctgatcattagaacccccca--ccacacagcggatcgaattcgaacccctcattt 954
>gb|CW060871.1|CW060871 104_304_10520092_114_30143 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10520092, DNA
sequence
Length = 487
Score = 73.8 bits (37), Expect = 2e-011
Identities = 85/101 (84%)
Strand = Plus / Minus
Query: 433 acgtggctctcgatgtcgtcgagcttctccccctgcgtctccaccatgacggccatgtcg 492
||||||||||||||||||| |||| | ||||||| |||||||| | ||||||||
Sbjct: 183 acgtggctctcgatgtcgttcagctggtgtccctgcgcctccaccagcgccgccatgtcc 124
Query: 493 aggaacacttggtggagctccaggaggctgcgttccacctc 533
|||||||| |||||||||||| ||||||||| ||||||||
Sbjct: 123 aggaacacctggtggagctccctgaggctgcgctccacctc 83
>gb|CW217464.1|CW217464 104_650_11195670_116_37132_019 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195670, DNA
sequence
Length = 638
Score = 73.8 bits (37), Expect = 2e-011
Identities = 85/101 (84%)
Strand = Plus / Plus
Query: 433 acgtggctctcgatgtcgtcgagcttctccccctgcgtctccaccatgacggccatgtcg 492
||||||||||||||||||| |||| | ||||||| |||||||| | ||||||||
Sbjct: 427 acgtggctctcgatgtcgttcagctggtgtccctgcgcctccaccagcgccgccatgtcc 486
Query: 493 aggaacacttggtggagctccaggaggctgcgttccacctc 533
|||||||| |||||||||||| ||||||||| ||||||||
Sbjct: 487 aggaacacctggtggagctccctgaggctgcgctccacctc 527
>gb|CW217465.1|CW217465 104_650_11195670_148_37131_019 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195670, DNA
sequence
Length = 720
Score = 73.8 bits (37), Expect = 2e-011
Identities = 85/101 (84%)
Strand = Plus / Minus
Query: 433 acgtggctctcgatgtcgtcgagcttctccccctgcgtctccaccatgacggccatgtcg 492
||||||||||||||||||| |||| | ||||||| |||||||| | ||||||||
Sbjct: 362 acgtggctctcgatgtcgttcagctggtgtccctgcgcctccaccagcgccgccatgtcc 303
Query: 493 aggaacacttggtggagctccaggaggctgcgttccacctc 533
|||||||| |||||||||||| ||||||||| ||||||||
Sbjct: 302 aggaacacctggtggagctccctgaggctgcgctccacctc 262
>gb|CW471098.1|CW471098 fsbb001f224m06k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f224m06, DNA
sequence
Length = 505
Score = 73.8 bits (37), Expect = 2e-011
Identities = 85/101 (84%)
Strand = Plus / Plus
Query: 433 acgtggctctcgatgtcgtcgagcttctccccctgcgtctccaccatgacggccatgtcg 492
||||||||||||||||||| |||| | ||||||| |||||||| | ||||||||
Sbjct: 247 acgtggctctcgatgtcgttcagctggtgtccctgcgcctccaccagcgccgccatgtcc 306
Query: 493 aggaacacttggtggagctccaggaggctgcgttccacctc 533
|||||||| |||||||||||| ||||||||| ||||||||
Sbjct: 307 aggaacacctggtggagctccctgaggctgcgctccacctc 347
>gb|CW273361.1|CW273361 104_745_11403854_148_35359_049 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11403854, DNA
sequence
Length = 517
Score = 61.9 bits (31), Expect = 7e-008
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 430 gcgacgtggctctcgatgtcgtcgagcttctccccctgcgtctccaccatgacggccatg 489
|||||||||||||||||||||| ||||| | |||||||| ||| || | | ||||||
Sbjct: 245 gcgacgtggctctcgatgtcgttgagctggtgcccctgcgcctcgacgagcgccgccatg 304
Query: 490 tcgaggaacacttggtggagctccaggaggctgcg 524
|| |||||||| ||||| || |||| |||||||||
Sbjct: 305 tccaggaacacctggtgcaggtccatgaggctgcg 339
>gb|CW273362.1|CW273362 104_745_11403854_148_35717_049 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11403854, DNA
sequence
Length = 641
Score = 61.9 bits (31), Expect = 7e-008
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 430 gcgacgtggctctcgatgtcgtcgagcttctccccctgcgtctccaccatgacggccatg 489
|||||||||||||||||||||| ||||| | |||||||| ||| || | | ||||||
Sbjct: 245 gcgacgtggctctcgatgtcgttgagctggtgcccctgcgcctcgacgagcgccgccatg 304
Query: 490 tcgaggaacacttggtggagctccaggaggctgcg 524
|| |||||||| ||||| || |||| |||||||||
Sbjct: 305 tccaggaacacctggtgcaggtccatgaggctgcg 339
>gb|CW178892.1|CW178892 104_592_11159808_116_36621_084 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11159808, DNA
sequence
Length = 616
Score = 58.0 bits (29), Expect = 1e-006
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 433 acgtggctctcgatgtcgtcgagcttctccccctgcgtctccaccatgacggccatgtcg 492
||||||||||||||||||| |||| | ||||||| |||||||| | ||||||||
Sbjct: 524 acgtggctctcgatgtcgttcagctggtgtccctgcgcctccaccagcgccgccatgtcc 583
Query: 493 aggaacacttggtggagctcc 513
|||||||| ||||||||||||
Sbjct: 584 aggaacacctggtggagctcc 604
>gb|BZ691149.1|BZ691149 SP__Ba0002O10.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0002O10 3', DNA sequence
Length = 960
Score = 48.1 bits (24), Expect = 0.001
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 482 cggccatgtcgaggaacacttggtggagctccaggaggctgcgttccacctc 533
|||||||||| ||||||| || |||||||||||||||| | | ||||||||
Sbjct: 242 cggccatgtccaggaacagctgctggagctccaggaggccgtgctccacctc 293
>gb|CW784754.1|CW784754 SP__Ba0002O10.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0002O10 3', DNA sequence
Length = 644
Score = 48.1 bits (24), Expect = 0.001
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 482 cggccatgtcgaggaacacttggtggagctccaggaggctgcgttccacctc 533
|||||||||| ||||||| || |||||||||||||||| | | ||||||||
Sbjct: 245 cggccatgtccaggaacagctgctggagctccaggaggccgtgctccacctc 296
>gb|CL194980.1|CL194980 104_420_10942034_116_32305_015 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10942034, DNA
sequence
Length = 480
Score = 44.1 bits (22), Expect = 0.016
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 616 aggagctcctcgccgcggtcgt 637
||||||||||||||||||||||
Sbjct: 288 aggagctcctcgccgcggtcgt 267
>gb|CW031503.1|CW031503 104_260_10500849_115_30366 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10500849, DNA
sequence
Length = 569
Score = 44.1 bits (22), Expect = 0.016
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 616 aggagctcctcgccgcggtcgt 637
||||||||||||||||||||||
Sbjct: 163 aggagctcctcgccgcggtcgt 142
>gb|CW161910.1|CW161910 104_569_11150660_116_36441_080 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11150660, DNA
sequence
Length = 743
Score = 44.1 bits (22), Expect = 0.016
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 616 aggagctcctcgccgcggtcgt 637
||||||||||||||||||||||
Sbjct: 706 aggagctcctcgccgcggtcgt 685
>gb|CW161911.1|CW161911 104_569_11150660_148_36442_080 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11150660, DNA
sequence
Length = 709
Score = 44.1 bits (22), Expect = 0.016
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 616 aggagctcctcgccgcggtcgt 637
||||||||||||||||||||||
Sbjct: 148 aggagctcctcgccgcggtcgt 169
>gb|CW337324.1|CW337324 104_837_11484098_116_36117_013 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11484098, DNA
sequence
Length = 638
Score = 44.1 bits (22), Expect = 0.016
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 616 aggagctcctcgccgcggtcgt 637
||||||||||||||||||||||
Sbjct: 287 aggagctcctcgccgcggtcgt 266
>gb|CW355444.1|CW355444 fsbb001f020b06k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f020b06, DNA
sequence
Length = 581
Score = 44.1 bits (22), Expect = 0.016
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 616 aggagctcctcgccgcggtcgt 637
||||||||||||||||||||||
Sbjct: 487 aggagctcctcgccgcggtcgt 466
>gb|CW432597.1|CW432597 fsbb001f147g08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f147g08, DNA
sequence
Length = 752
Score = 44.1 bits (22), Expect = 0.016
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 616 aggagctcctcgccgcggtcgt 637
||||||||||||||||||||||
Sbjct: 603 aggagctcctcgccgcggtcgt 582
>gb|CD226270.1|CD226270 CCC1_44_F10.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_44_F10_A007 5', mRNA sequence
Length = 642
Score = 44.1 bits (22), Expect = 0.016
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 616 aggagctcctcgccgcggtcgt 637
||||||||||||||||||||||
Sbjct: 266 aggagctcctcgccgcggtcgt 245
>gb|BG933290.1|BG933290 WS1_92_F03.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 724
Score = 42.1 bits (21), Expect = 0.063
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 441 ctcgatgtcgtcgagcttctccccctgcg 469
|||||||||||| |||| |||||||||||
Sbjct: 291 ctcgatgtcgtccagctgctccccctgcg 263
>gb|CF772813.1|CF772813 DSBF1_39_G01.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_39_G01_A010 3', mRNA sequence
Length = 437
Score = 42.1 bits (21), Expect = 0.063
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 441 ctcgatgtcgtcgagcttctccccctgcg 469
|||||||||||| |||| |||||||||||
Sbjct: 55 ctcgatgtcgtccagctgctccccctgcg 27
>gb|CN126431.1|CN126431 RHOH1_17_D03.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_17_D03_A002 3', mRNA sequence
Length = 726
Score = 42.1 bits (21), Expect = 0.063
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 441 ctcgatgtcgtcgagcttctccccctgcg 469
|||||||||||| |||| |||||||||||
Sbjct: 282 ctcgatgtcgtccagctgctccccctgcg 254
>gb|CW140005.1|CW140005 104_530_11135549_148_34918_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11135549, DNA
sequence
Length = 673
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 565 tgcaccgcggcgagcacggc 584
||||||||||||||||||||
Sbjct: 147 tgcaccgcggcgagcacggc 128
>gb|CW244204.1|CW244204 104_705_11220467_116_37589_048 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11220467, DNA
sequence
Length = 670
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 581 cggcgcccttgccgtgctccgcga 604
||||||||||||||||| ||||||
Sbjct: 572 cggcgcccttgccgtgccccgcga 549
>gb|CD209494.1|CD209494 HS1_42_B06.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_42_B06_A012 5', mRNA sequence
Length = 702
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 582 ggcgcccttgccgtgctccgcgac 605
||||||||||||||||||| ||||
Sbjct: 89 ggcgcccttgccgtgctccccgac 112
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 198,435
Number of Sequences: 832831
Number of extensions: 198435
Number of successful extensions: 57534
Number of sequences better than 0.5: 33
Number of HSP's better than 0.5 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57456
Number of HSP's gapped (non-prelim): 54
length of query: 656
length of database: 491,359,669
effective HSP length: 19
effective length of query: 637
effective length of database: 475,535,880
effective search space: 302916355560
effective search space used: 302916355560
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)