BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2649891.2.1
(621 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW396909.1|CW396909 fsbb001f085j02k0 Sorghum methylation... 276 2e-072
gb|BG048512.1|BG048512 OV1_14_E03.g2_A002 Ovary 1 (OV1) Sor... 276 2e-072
gb|CW268308.1|CW268308 104_739_11401215_116_35306_064 Sorgh... 224 8e-057
gb|CW062333.1|CW062333 104_307_10521280_5_30083 Sorghum met... 216 2e-054
gb|CW134146.1|CW134146 104_518_11117151_116_34820_060 Sorgh... 214 7e-054
gb|BG048752.1|BG048752 OV1_22_E11.b1_A002 Ovary 1 (OV1) Sor... 121 8e-026
gb|BG049103.1|BG049103 OV1_23_C12.g1_A002 Ovary 1 (OV1) Sor... 121 8e-026
gb|BG049047.1|BG049047 OV1_22_E11.g1_A002 Ovary 1 (OV1) Sor... 119 3e-025
gb|CW062332.1|CW062332 104_307_10521280_1_30043 Sorghum met... 113 2e-023
gb|CN146289.1|CN146289 WOUND1_39_H03.b1_A002 Wounded leaves... 111 8e-023
gb|CW268309.1|CW268309 104_739_11401215_148_35310_064 Sorgh... 109 3e-022
gb|CD219865.1|CD219865 CCC1_59_D05.g1_A007 Callus culture/c... 109 3e-022
gb|BZ339450.1|BZ339450 ic32c10.b1 WGS-SbicolorF (JM107 adap... 86 4e-015
gb|CW241492.1|CW241492 104_700_11218800_148_37543_086 Sorgh... 86 4e-015
gb|CW369801.1|CW369801 fsbb001f044g11f0 Sorghum methylation... 86 4e-015
gb|BG049025.1|BG049025 OV1_22_C07.g1_A002 Ovary 1 (OV1) Sor... 86 4e-015
gb|CD219482.1|CD219482 CCC1_57_C04.b1_A007 Callus culture/c... 86 4e-015
gb|CD226829.1|CD226829 CCC1_48_E12.b1_A007 Callus culture/c... 86 4e-015
gb|CW233768.1|CW233768 104_687_11213622_116_37380_027 Sorgh... 78 1e-012
gb|CW435340.1|CW435340 fsbb001f151h04k0 Sorghum methylation... 78 1e-012
gb|BG047628.1|BG047628 OV1_26_C01.b1_A002 Ovary 1 (OV1) Sor... 78 1e-012
gb|CW217959.1|CW217959 104_651_11195928_148_37066_090 Sorgh... 76 4e-012
gb|CW233769.1|CW233769 104_687_11213622_148_37379_027 Sorgh... 74 2e-011
gb|CW241491.1|CW241491 104_700_11218800_116_37544_086 Sorgh... 74 2e-011
gb|BZ349112.1|BZ349112 hq87c03.g1 WGS-SbicolorF (JM107 adap... 72 7e-011
gb|CL165129.1|CL165129 104_359_10808375_114_31816_359 Sorgh... 72 7e-011
gb|CW204078.1|CW204078 104_631_11186348_148_37094_066 Sorgh... 72 7e-011
gb|CW402616.1|CW402616 fsbb001f093p05k0 Sorghum methylation... 72 7e-011
gb|BE357973.1|BE357973 DG1_23_H03.g1_A002 Dark Grown 1 (DG1... 72 7e-011
gb|CD230488.1|CD230488 SS1_44_B08.b1_A012 Salt-stressed see... 72 7e-011
gb|CD231800.1|CD231800 SS1_30_D03.b1_A012 Salt-stressed see... 72 7e-011
gb|CD233638.1|CD233638 SS1_3_G02.b1_A012 Salt-stressed seed... 72 7e-011
gb|CD428756.1|CD428756 ETH1_36_H11.b1_A002 Ethylene-treated... 72 7e-011
gb|CD432496.1|CD432496 ETH1_30_C04.b1_A002 Ethylene-treated... 72 7e-011
gb|CD462510.1|CD462510 ETH1_38_D10.b1_A002 Ethylene-treated... 72 7e-011
gb|CN125001.1|CN125001 RHOH1_8_F08.b1_A002 Acid- and alkali... 72 7e-011
gb|CD219585.1|CD219585 CCC1_57_C04.g1_A007 Callus culture/c... 66 4e-009
gb|CD226852.1|CD226852 CCC1_48_E12.g1_A007 Callus culture/c... 66 4e-009
gb|CW433265.1|CW433265 fsbb001f148g13f0 Sorghum methylation... 64 2e-008
gb|BF656823.1|BF656823 OV2_23_D07.g1_A002 Ovary 2 (OV2) Sor... 64 2e-008
gb|CX613415.1|CX613415 GABR1_8_B11.b1_A002 GA- or brassinol... 64 2e-008
gb|DN552513.1|DN552513 pSHR-RT-A-H1_H09_C105 pSHR Sorghum h... 64 2e-008
gb|BH245862.1|BH245862 pSB1435.2 S. bicolor BTx623 PstI-dig... 62 6e-008
gb|CW377780.1|CW377780 fsbb001f056d24k0 Sorghum methylation... 62 6e-008
gb|CW445527.1|CW445527 fsbb001f170l16k0 Sorghum methylation... 62 6e-008
gb|BG048731.1|BG048731 OV1_22_C07.b1_A002 Ovary 1 (OV1) Sor... 62 6e-008
gb|BG048811.1|BG048811 OV1_23_C12.b1_A002 Ovary 1 (OV1) Sor... 62 6e-008
gb|CD229975.1|CD229975 SS1_40_F09.b1_A012 Salt-stressed see... 62 6e-008
gb|CN146372.1|CN146372 WOUND1_39_H03.g1_A002 Wounded leaves... 56 4e-006
gb|BG159238.1|BG159238 OV2_5_B04.g1_A002 Ovary 2 (OV2) Sorg... 54 2e-005
gb|BI099614.1|BI099614 IP1_44_E02.g1_A002 Immature pannicle... 54 2e-005
gb|CD220424.1|CD220424 CCC1_67_F12.b1_A007 Callus culture/c... 54 2e-005
gb|CL155532.1|CL155532 104_341_10782207_114_31471_303 Sorgh... 52 6e-005
gb|CW051419.1|CW051419 104_291_10515236_114_30192 Sorghum m... 52 6e-005
gb|CW134147.1|CW134147 104_518_11117151_148_34816_060 Sorgh... 52 6e-005
gb|CW138756.1|CW138756 104_528_11134865_116_34888_069 Sorgh... 52 6e-005
gb|CW138757.1|CW138757 104_528_11134865_148_34892_069 Sorgh... 52 6e-005
gb|CW407265.1|CW407265 fsbb001f100k14k0 Sorghum methylation... 52 6e-005
gb|AW287233.2|AW287233 LG1_268_C03.b1_A002 Light Grown 1 (L... 52 6e-005
gb|BE358945.1|BE358945 DG1_37_C09.b1_A002 Dark Grown 1 (DG1... 52 6e-005
gb|BE361499.1|BE361499 DG1_81_B09.b1_A002 Dark Grown 1 (DG1... 52 6e-005
gb|BF421147.1|BF421147 FM1_6_A06.b1_A003 Floral-Induced Mer... 52 6e-005
gb|CD223455.1|CD223455 CCC1_28_H10.b1_A007 Callus culture/c... 52 6e-005
gb|CD227549.1|CD227549 CCC1_52_B10.b1_A007 Callus culture/c... 52 6e-005
gb|CN127255.1|CN127255 RHOH1_22_A01.b1_A002 Acid- and alkal... 52 6e-005
gb|BZ780043.1|BZ780043 ii36g12.g1 WGS-SbicolorF (DH5a methy... 48 0.001
gb|CW430464.1|CW430464 fsbb001f144d01f0 Sorghum methylation... 48 0.001
gb|BG158255.1|BG158255 EM1_9_D12.b1_A002 Embryo 1 (EM1) Sor... 48 0.001
gb|CN128146.1|CN128146 RHOH1_27_G06.b1_A002 Acid- and alkal... 48 0.001
gb|BZ780437.1|BZ780437 ii12c06.b1 WGS-SbicolorF (DH5a methy... 46 0.004
gb|CW061064.1|CW061064 104_304_10520199_114_30143 Sorghum m... 46 0.004
gb|CW089886.1|CW089886 104_435_10948967_116_32598_088 Sorgh... 46 0.004
gb|CW133289.1|CW133289 104_517_11116679_148_34812_096 Sorgh... 46 0.004
gb|CW189107.1|CW189107 104_610_11173790_116_37100_059 Sorgh... 46 0.004
gb|CW253166.1|CW253166 104_716_11224935_116_35104_054 Sorgh... 46 0.004
gb|CW376698.1|CW376698 fsbb001f054l06f0 Sorghum methylation... 46 0.004
gb|CW399257.1|CW399257 fsbb001f089a13f0 Sorghum methylation... 46 0.004
gb|CW480555.1|CW480555 fsbb001f239k22f0 Sorghum methylation... 46 0.004
gb|BE358978.1|BE358978 DG1_37_C09.g1_A002 Dark Grown 1 (DG1... 46 0.004
gb|CD210102.1|CD210102 HS1_57_F11.b1_A012 Heat-shocked seed... 46 0.004
gb|CD221639.1|CD221639 CCC1_70_G11.b1_A007 Callus culture/c... 46 0.004
gb|CD221661.1|CD221661 CCC1_70_E11.b1_A007 Callus culture/c... 46 0.004
gb|CN128898.1|CN128898 RHOH1_32_F11.b1_A002 Acid- and alkal... 46 0.004
gb|CN128978.1|CN128978 RHOH1_32_F11.g1_A002 Acid- and alkal... 46 0.004
gb|CN133273.1|CN133273 OX1_11_E08.b1_A002 Oxidatively-stres... 46 0.004
gb|CN133353.1|CN133353 OX1_11_E08.g1_A002 Oxidatively-stres... 46 0.004
gb|CN134577.1|CN134577 OX1_27_E09.b1_A002 Oxidatively-stres... 46 0.004
gb|CN134664.1|CN134664 OX1_27_E09.g1_A002 Oxidatively-stres... 46 0.004
gb|CN146585.1|CN146585 WOUND1_42_E05.b1_A002 Wounded leaves... 46 0.004
gb|CX606182.1|CX606182 ANR1_1_C10.g1_A002 Anaerobic roots S... 46 0.004
gb|CX616493.1|CX616493 GABR1_28_F03.b1_A002 GA- or brassino... 46 0.004
gb|CX616580.1|CX616580 GABR1_28_F03.g1_A002 GA- or brassino... 46 0.004
gb|CW038534.1|CW038534 104_270_10504977_115_30386 Sorghum m... 44 0.015
gb|CW054610.1|CW054610 104_295_10516628_115_30179 Sorghum m... 44 0.015
gb|CW140343.1|CW140343 104_530_11135731_148_34916_066 Sorgh... 44 0.015
gb|CW155769.1|CW155769 104_558_11146316_116_36370_074 Sorgh... 44 0.015
gb|CW417495.1|CW417495 fsbb001f120i17f0 Sorghum methylation... 44 0.015
gb|CW417496.1|CW417496 fsbb001f120i17k0 Sorghum methylation... 44 0.015
gb|CW428522.1|CW428522 fsbb001f141e10k0 Sorghum methylation... 44 0.015
gb|CW454420.1|CW454420 fsbb001f198n16k0 Sorghum methylation... 44 0.015
gb|BG559766.1|BG559766 RHIZ2_73_D05.g1_A003 Rhizome2 (RHIZ2... 44 0.015
gb|CN136626.1|CN136626 OX1_44_G12.b1_A002 Oxidatively-stres... 44 0.015
gb|CX607987.1|CX607987 ANR1_32_A06.b1_A002 Anaerobic roots ... 44 0.015
gb|CX614568.1|CX614568 GABR1_14_H01.g1_A002 GA- or brassino... 44 0.015
gb|CW217957.1|CW217957 104_651_11195928_116_37067_090 Sorgh... 42 0.060
gb|CW376699.1|CW376699 fsbb001f054l06k0 Sorghum methylation... 42 0.060
gb|BE357900.1|BE357900 DG1_23_H03.b1_A002 Dark Grown 1 (DG1... 42 0.060
gb|CN125086.1|CN125086 RHOH1_8_F08.g1_A002 Acid- and alkali... 42 0.060
gb|CN128214.1|CN128214 RHOH1_27_G06.g1_A002 Acid- and alkal... 42 0.060
gb|CN128815.1|CN128815 RHOH1_31_F05.g1_A002 Acid- and alkal... 42 0.060
gb|CN130578.1|CN130578 RHOH1_42_A01.g1_A002 Acid- and alkal... 42 0.060
gb|CN131734.1|CN131734 OX1_2_B01.b1_A002 Oxidatively-stress... 42 0.060
gb|CL184581.1|CL184581 104_398_10898944_116_32371_064 Sorgh... 40 0.24
gb|CL189510.1|CL189510 104_406_10902348_114_32468_034 Sorgh... 40 0.24
gb|CW115055.1|CW115055 104_490_11106333_148_34588_095 Sorgh... 40 0.24
gb|CW204077.1|CW204077 104_631_11186348_116_37095_066 Sorgh... 40 0.24
gb|CW296541.1|CW296541 104_778_11461562_116_35631_009 Sorgh... 40 0.24
gb|CW314900.1|CW314900 104_805_11472073_116_35817_003 Sorgh... 40 0.24
gb|CW323837.1|CW323837 104_818_11476843_116_35904_078 Sorgh... 40 0.24
gb|CW402615.1|CW402615 fsbb001f093p05f0 Sorghum methylation... 40 0.24
gb|CW450615.1|CW450615 fsbb001f189f13f0 Sorghum methylation... 40 0.24
gb|BE360318.1|BE360318 DG1_62_E04.g1_A002 Dark Grown 1 (DG1... 40 0.24
gb|CD233659.1|CD233659 SS1_3_G02.g1_A012 Salt-stressed seed... 40 0.24
gb|CD431147.1|CD431147 ETH1_7_B06.b1_A002 Ethylene-treated ... 40 0.24
gb|CD432508.1|CD432508 ETH1_30_C04.g1_A002 Ethylene-treated... 40 0.24
gb|CD462620.1|CD462620 ETH1_38_D10.g1_A002 Ethylene-treated... 40 0.24
gb|CF427057.1|CF427057 PH1_3_D05.b1_A002 Phosphorous-defici... 40 0.24
gb|CF429158.1|CF429158 PH1_20_E04.b1_A002 Phosphorous-defic... 40 0.24
gb|CF429637.1|CF429637 PH1_23_B04.b1_A002 Phosphorous-defic... 40 0.24
gb|CN125883.1|CN125883 RHOH1_14_A01.b1_A002 Acid- and alkal... 40 0.24
gb|CN126589.1|CN126589 RHOH1_18_C01.b1_A002 Acid- and alkal... 40 0.24
gb|CN126677.1|CN126677 RHOH1_18_C01.g1_A002 Acid- and alkal... 40 0.24
gb|CN129415.1|CN129415 RHOH1_35_G04.b3_A002 Acid- and alkal... 40 0.24
gb|CN129456.1|CN129456 RHOH1_35_B11.g1_A002 Acid- and alkal... 40 0.24
gb|CN131170.1|CN131170 RHOH1_46_G08.b1_A002 Acid- and alkal... 40 0.24
gb|CN131258.1|CN131258 RHOH1_46_G08.g1_A002 Acid- and alkal... 40 0.24
gb|CN135165.1|CN135165 OX1_31_B04.b1_A002 Oxidatively-stres... 40 0.24
gb|CX606110.1|CX606110 ANR1_1_E07.b1_A002 Anaerobic roots S... 40 0.24
gb|CX606202.1|CX606202 ANR1_1_E07.g1_A002 Anaerobic roots S... 40 0.24
gb|CX609868.1|CX609868 ANR1_15_F01.b1_A002 Anaerobic roots ... 40 0.24
gb|CX609949.1|CX609949 ANR1_15_F01.g1_A002 Anaerobic roots ... 40 0.24
gb|CX610369.1|CX610369 ANR1_18_F11.b1_A002 Anaerobic roots ... 40 0.24
>gb|CW396909.1|CW396909 fsbb001f085j02k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f085j02, DNA
sequence
Length = 598
Score = 276 bits (139), Expect = 2e-072
Identities = 176/189 (93%)
Strand = Plus / Minus
Query: 210 ttagttgctgaagttgacgaccgagcggtacgtggcgccgggcgtccaccccgcggggat 269
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 229 ttagttgttgaagttgacgaccgagcggtacgtggcgccgggcgaccaccccgcggggat 170
Query: 270 gacgtcgctggcgacgaccgtcctgccggagcccgacgtgaggcggacggagaagggccc 329
||||| | |||| |||||||||||||||||||| || ||||||||||||||||||||| |
Sbjct: 169 gacgttggtggccacgaccgtcctgccggagccggaggtgaggcggacggagaagggcgc 110
Query: 330 ctgcagggtggcgccggagttgnacctccacaccgngccccacgactgctgcatcggcgc 389
|||||||| ||||||||||||| |||||||||| | |||||||||| |||||||||||||
Sbjct: 109 ctgcagggcggcgccggagttgtacctccacacggcgccccacgaccgctgcatcggcgc 50
Query: 390 ccacgccgc 398
|||||||||
Sbjct: 49 ccacgccgc 41
Score = 56.0 bits (28), Expect = 4e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 419 gctgcatgagctccacggacctgagctcgccg 450
|||||||||||||||||||||| |||||||||
Sbjct: 32 gctgcatgagctccacggacctcagctcgccg 1
Score = 52.0 bits (26), Expect = 6e-005
Identities = 33/34 (97%), Gaps = 1/34 (2%)
Strand = Plus / Minus
Query: 107 agctcgaatcataaaccaagcc-agcgccacgcc 139
|||||||||||||||||||||| |||||||||||
Sbjct: 323 agctcgaatcataaaccaagccaagcgccacgcc 290
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 53 tgtcacgcacgcaacagtacaca 75
|||||||||||||||||||||||
Sbjct: 383 tgtcacgcacgcaacagtacaca 361
>gb|BG048512.1|BG048512 OV1_14_E03.g2_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 547
Score = 276 bits (139), Expect = 2e-072
Identities = 176/189 (93%)
Strand = Plus / Minus
Query: 210 ttagttgctgaagttgacgaccgagcggtacgtggcgccgggcgtccaccccgcggggat 269
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 360 ttagttgttgaagttgacgaccgagcggtacgtggcgccgggcgaccaccccgcggggat 301
Query: 270 gacgtcgctggcgacgaccgtcctgccggagcccgacgtgaggcggacggagaagggccc 329
||||| | |||| |||||||||||||||||||| || ||||||||||||||||||||| |
Sbjct: 300 gacgttggtggccacgaccgtcctgccggagccggaggtgaggcggacggagaagggcgc 241
Query: 330 ctgcagggtggcgccggagttgnacctccacaccgngccccacgactgctgcatcggcgc 389
|||||||| ||||||||||||| |||||||||| | |||||||||| |||||||||||||
Sbjct: 240 ctgcagggcggcgccggagttgtacctccacacggcgccccacgaccgctgcatcggcgc 181
Query: 390 ccacgccgc 398
|||||||||
Sbjct: 180 ccacgccgc 172
Score = 238 bits (120), Expect = 5e-061
Identities = 149/159 (93%)
Strand = Plus / Minus
Query: 419 gctgcatgagctccacggacctgagctcgccgtcgccggactcgtactcgaccagcaccg 478
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 163 gctgcatgagctccacggacctcagctcgccgtcgccggactcgtactcgatcagcaccg 104
Query: 479 ccaagtagttcgcgttcgagccggcgtccaccttgaacgcgatgtccatcccgttccagc 538
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 103 gcaagtagttcgcgttcgacccgccgtccaccttgaacgcgatgtccatcccgttccagt 44
Query: 539 tgcacggcacccgggngtactggatcctgaggcgtccgg 577
||||||||||||| | |||||||||| ||||| ||||||
Sbjct: 43 tgcacggcacccgagtgtactggatcttgaggagtccgg 5
Score = 52.0 bits (26), Expect = 6e-005
Identities = 33/34 (97%), Gaps = 1/34 (2%)
Strand = Plus / Minus
Query: 107 agctcgaatcataaaccaagcc-agcgccacgcc 139
|||||||||||||||||||||| |||||||||||
Sbjct: 454 agctcgaatcataaaccaagccaagcgccacgcc 421
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 53 tgtcacgcacgcaacagtacaca 75
|||||||||||||||||||||||
Sbjct: 514 tgtcacgcacgcaacagtacaca 492
>gb|CW268308.1|CW268308 104_739_11401215_116_35306_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11401215, DNA
sequence
Length = 465
Score = 224 bits (113), Expect = 8e-057
Identities = 165/183 (90%)
Strand = Plus / Plus
Query: 210 ttagttgctgaagttgacgaccgagcggtacgtggcgccgggcgtccaccccgcggggat 269
||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 215 ttagttgttgaacttgacgaccgagcggtacgtggcgccgggcgaccaccccgcggggat 274
Query: 270 gacgtcgctggcgacgaccgtcctgccggagcccgacgtgaggcggacggagaagggccc 329
||||| | |||| |||||||||||||||||||| || |||| |||||||||||||||| |
Sbjct: 275 gacgttggtggccacgaccgtcctgccggagccggaggtgaagcggacggagaagggcgc 334
Query: 330 ctgcagggtggcgccggagttgnacctccacaccgngccccacgactgctgcatcggcgc 389
|||||||| || ||| |||||| |||||||||| | |||||||||| ||||||||||| |
Sbjct: 335 ctgcagggcggggccagagttgtacctccacactgcgccccacgaccgctgcatcggctc 394
Query: 390 cca 392
|||
Sbjct: 395 cca 397
Score = 85.7 bits (43), Expect = 4e-015
Identities = 49/51 (96%)
Strand = Plus / Plus
Query: 419 gctgcatgagctccacggacctgagctcgccgtcgccggactcgtactcga 469
|||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 412 gctgcatgagctccacggacctcagctcgccatcgccggactcgtactcga 462
Score = 48.1 bits (24), Expect = 0.001
Identities = 31/32 (96%), Gaps = 1/32 (3%)
Strand = Plus / Plus
Query: 109 ctcgaatcataaaccaagcc-agcgccacgcc 139
|||||||||||||||||||| |||||||||||
Sbjct: 123 ctcgaatcataaaccaagccaagcgccacgcc 154
>gb|CW062333.1|CW062333 104_307_10521280_5_30083 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10521280, DNA
sequence
Length = 399
Score = 216 bits (109), Expect = 2e-054
Identities = 124/129 (96%)
Strand = Plus / Minus
Query: 422 gcatgagctccacggacctgagctcgccgtcgccggactcgtactcgaccagcaccgcca 481
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 399 gcatgagctccacggacctcagctcgccgtcgccggactcgtactcgatcagcaccgcca 340
Query: 482 agtagttcgcgttcgagccggcgtccaccttgaacgcgatgtccatcccgttccagctgc 541
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 339 agtagttcgcgttcgacccgccgtccaccttgaacgcgatgtccatcccgttccagttgc 280
Query: 542 acggcaccc 550
|||||||||
Sbjct: 279 acggcaccc 271
>gb|CW134146.1|CW134146 104_518_11117151_116_34820_060 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11117151, DNA
sequence
Length = 437
Score = 214 bits (108), Expect = 7e-054
Identities = 126/132 (95%)
Strand = Plus / Minus
Query: 419 gctgcatgagctccacggacctgagctcgccgtcgccggactcgtactcgaccagcaccg 478
|||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||
Sbjct: 395 gctgcatgagctccacggacctcagctcgctgtcgccggactcgtactcgatcagcaccg 336
Query: 479 ccaagtagttcgcgttcgagccggcgtccaccttgaacgcgatgtccatcccgttccagc 538
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 335 ccaagtagttcgcgttcgacccgccgtccaccttgaacgcgatgtccatcccgttccagt 276
Query: 539 tgcacggcaccc 550
||||||||||||
Sbjct: 275 tgcacggcaccc 264
Score = 44.1 bits (22), Expect = 0.015
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Minus
Query: 366 gccccacgactgc-tgcatcggcgcccacgccgc 398
|||||||||| || ||||||||||||||||||||
Sbjct: 437 gccccacgaccgcctgcatcggcgcccacgccgc 404
>gb|BG048752.1|BG048752 OV1_22_E11.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 405
Score = 121 bits (61), Expect = 8e-026
Identities = 120/140 (85%)
Strand = Plus / Minus
Query: 478 gccaagtagttcgcgttcgagccggcgtccaccttgaacgcgatgtccatcccgttccag 537
|||| |||||| ||||||||||||||||||||| |||| || | ||||| |||||||||
Sbjct: 300 gccaggtagttggcgttcgagccggcgtccaccctgaaggccacgtccacgccgttccag 241
Query: 538 ctgcacggcacccgggngtactggatcctgaggcgtccggcgctgcggagctggtcggcc 597
||||||||||||| | |||||||| |||||| ||| || | |||||||||||||||
Sbjct: 240 ttgcacggcacccgagtgtactggactgggaggcggccgacgtttcggagctggtcggcc 181
Query: 598 tggccgggcttcgccatggc 617
|||||||| |||||||||||
Sbjct: 180 tggccgggtttcgccatggc 161
Score = 42.1 bits (21), Expect = 0.060
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 358 cacaccgngccccacgactgctgcatcggcgcccacgccgccgc 401
||||||| |||||| || ||| ||| |||||||||||||||||
Sbjct: 405 cacaccgcgccccaggagcgctccatgggcgcccacgccgccgc 362
>gb|BG049103.1|BG049103 OV1_23_C12.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 554
Score = 121 bits (61), Expect = 8e-026
Identities = 120/140 (85%)
Strand = Plus / Minus
Query: 478 gccaagtagttcgcgttcgagccggcgtccaccttgaacgcgatgtccatcccgttccag 537
|||| |||||| ||||||||||||||||||||| |||| || | ||||| |||||||||
Sbjct: 221 gccaggtagttggcgttcgagccggcgtccaccctgaaggccacgtccacgccgttccag 162
Query: 538 ctgcacggcacccgggngtactggatcctgaggcgtccggcgctgcggagctggtcggcc 597
||||||||||||| | |||||||| |||||| ||| || | |||||||||||||||
Sbjct: 161 ttgcacggcacccgagtgtactggactgggaggcggccgacgtttcggagctggtcggcc 102
Query: 598 tggccgggcttcgccatggc 617
|||||||| |||||||||||
Sbjct: 101 tggccgggtttcgccatggc 82
Score = 85.7 bits (43), Expect = 4e-015
Identities = 85/99 (85%)
Strand = Plus / Minus
Query: 219 gaagttgacgaccgagcggtacgtggcgccgggcgtccaccccgcggggatgacgtcgct 278
|||||||||||| |||||||| ||| ||||||| ||| || |||||||||||| ||||
Sbjct: 471 gaagttgacgacggagcggtaggtgttgccgggctgccatccggcggggatgacgccgct 412
Query: 279 ggcgacgaccgtcctgccggagcccgacgtgaggcggac 317
|||||||| ||| |||||||||| || |||||||||||
Sbjct: 411 ggcgacgagggtcttgccggagccggaggtgaggcggac 373
Score = 44.1 bits (22), Expect = 0.015
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 357 ccacaccgngccccacgactgctgcatcggcgcccacgccgccgc 401
|||||||| |||||| || ||| ||| |||||||||||||||||
Sbjct: 327 ccacaccgcgccccaggagcgctccatgggcgcccacgccgccgc 283
>gb|BG049047.1|BG049047 OV1_22_E11.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 566
Score = 119 bits (60), Expect = 3e-025
Identities = 119/139 (85%)
Strand = Plus / Minus
Query: 478 gccaagtagttcgcgttcgagccggcgtccaccttgaacgcgatgtccatcccgttccag 537
|||| |||||| ||||||||||||||||||||| |||| || | ||||| |||||||||
Sbjct: 142 gccaggtagttggcgttcgagccggcgtccaccctgaaggccacgtccacgccgttccag 83
Query: 538 ctgcacggcacccgggngtactggatcctgaggcgtccggcgctgcggagctggtcggcc 597
||||||||||||| | |||||||| |||||| ||| || | |||||||||||||||
Sbjct: 82 ttgcacggcacccgagtgtactggactgggaggcggccgacgtttcggagctggtcggcc 23
Query: 598 tggccgggcttcgccatgg 616
|||||||| ||||||||||
Sbjct: 22 tggccgggtttcgccatgg 4
Score = 85.7 bits (43), Expect = 4e-015
Identities = 85/99 (85%)
Strand = Plus / Minus
Query: 219 gaagttgacgaccgagcggtacgtggcgccgggcgtccaccccgcggggatgacgtcgct 278
|||||||||||| |||||||| ||| ||||||| ||| || |||||||||||| ||||
Sbjct: 392 gaagttgacgacggagcggtaggtgttgccgggctgccatccggcggggatgacgccgct 333
Query: 279 ggcgacgaccgtcctgccggagcccgacgtgaggcggac 317
|||||||| ||| |||||||||| || |||||||||||
Sbjct: 332 ggcgacgagggtcttgccggagccggaggtgaggcggac 294
Score = 44.1 bits (22), Expect = 0.015
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 357 ccacaccgngccccacgactgctgcatcggcgcccacgccgccgc 401
|||||||| |||||| || ||| ||| |||||||||||||||||
Sbjct: 248 ccacaccgcgccccaggagcgctccatgggcgcccacgccgccgc 204
>gb|CW062332.1|CW062332 104_307_10521280_1_30043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10521280, DNA
sequence
Length = 518
Score = 113 bits (57), Expect = 2e-023
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 210 ttagttgctgaagttgacgaccgagcggtacgtggcgccgggcgtccaccccgcggggat 269
||||||| |||| |||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 430 ttagttgttgaaagtgacgaccgagcggtacgtggcgcggggcgaccaccccgcggggat 489
Query: 270 gacgtcgctggcgacgaccgtcctgccgg 298
||||| | |||| ||||||||||||||||
Sbjct: 490 gacgttggtggccacgaccgtcctgccgg 518
Score = 52.0 bits (26), Expect = 6e-005
Identities = 33/34 (97%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 107 agctcgaatcataaaccaagcc-agcgccacgcc 139
|||||||||||||||||||||| |||||||||||
Sbjct: 336 agctcgaatcataaaccaagccaagcgccacgcc 369
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 tgtcacgcacgcaacagtacaca 75
|||||||||||||||||||||||
Sbjct: 276 tgtcacgcacgcaacagtacaca 298
>gb|CN146289.1|CN146289 WOUND1_39_H03.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_39_H03_A002 3', mRNA sequence
Length = 509
Score = 111 bits (56), Expect = 8e-023
Identities = 132/158 (83%)
Strand = Plus / Minus
Query: 236 ggtacgtggcgccgggcgtccaccccgcggggatgacgtcgctggcgacgaccgtcctgc 295
|||| |||||||||||||||||||| ||||||||||||| ||||||||||| | | |||
Sbjct: 190 ggtaggtggcgccgggcgtccacccggcggggatgacgttgctggcgacgagctgcttgc 131
Query: 296 cggagcccgacgtgaggcggacggagaagggcccctgcagggtggcgccggagttgnacc 355
|||||| |||||| ||||||| ||| |||||| |||||| || | |||| |||| ||
Sbjct: 130 cggagctcgacgtcaggcggatggacaagggcgcctgcaaggccgacccggcgttgaact 71
Query: 356 tccacaccgngccccacgactgctgcatcggcgcccac 393
|||| || | |||||||||| ||||||| | |||||||
Sbjct: 70 tccagacggcgccccacgacggctgcatggacgcccac 33
>gb|CW268309.1|CW268309 104_739_11401215_148_35310_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11401215, DNA
sequence
Length = 713
Score = 109 bits (55), Expect = 3e-022
Identities = 64/67 (95%)
Strand = Plus / Minus
Query: 555 gtactggatcctgaggcgtccggcgctgcggagctggtcggcctggccgggcttcgccat 614
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gtactggatcttgaggagtccggcgctgcggagctggtcggcctggccgggcttcgccag 393
Query: 615 ggctccg 621
|||||||
Sbjct: 392 ggctccg 386
>gb|CD219865.1|CD219865 CCC1_59_D05.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_59_D05_A007 5', mRNA sequence
Length = 596
Score = 109 bits (55), Expect = 3e-022
Identities = 64/67 (95%)
Strand = Plus / Minus
Query: 555 gtactggatcctgaggcgtccggcgctgcggagctggtcggcctggccgggcttcgccat 614
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gtactggatcttgaggagtccggcgctgcggagctggtcggcctggccgggcttcgccag 468
Query: 615 ggctccg 621
|||||||
Sbjct: 467 ggctccg 461
>gb|BZ339450.1|BZ339450 ic32c10.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic32c10 5', DNA sequence
Length = 683
Score = 85.7 bits (43), Expect = 4e-015
Identities = 85/99 (85%)
Strand = Plus / Minus
Query: 219 gaagttgacgaccgagcggtacgtggcgccgggcgtccaccccgcggggatgacgtcgct 278
|||||||||||| |||||||| ||| ||||||| ||| || |||||||||||| ||||
Sbjct: 383 gaagttgacgacggagcggtaggtgttgccgggctgccatccggcggggatgacgccgct 324
Query: 279 ggcgacgaccgtcctgccggagcccgacgtgaggcggac 317
|||||||| ||| |||||||||| || |||||||||||
Sbjct: 323 ggcgacgagggtcttgccggagccggaggtgaggcggac 285
Score = 73.8 bits (37), Expect = 2e-011
Identities = 64/73 (87%)
Strand = Plus / Minus
Query: 478 gccaagtagttcgcgttcgagccggcgtccaccttgaacgcgatgtccatcccgttccag 537
|||| |||||| ||||||||||||||||||||| |||| || | ||||| |||||||||
Sbjct: 133 gccaggtagttggcgttcgagccggcgtccaccctgaaggccacgtccacgccgttccag 74
Query: 538 ctgcacggcaccc 550
||||||||||||
Sbjct: 73 ttgcacggcaccc 61
Score = 44.1 bits (22), Expect = 0.015
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 357 ccacaccgngccccacgactgctgcatcggcgcccacgccgccgc 401
|||||||| |||||| || ||| ||| |||||||||||||||||
Sbjct: 239 ccacaccgcgccccaggagcgctccatgggcgcccacgccgccgc 195
>gb|CW241492.1|CW241492 104_700_11218800_148_37543_086 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11218800, DNA
sequence
Length = 644
Score = 85.7 bits (43), Expect = 4e-015
Identities = 85/99 (85%)
Strand = Plus / Plus
Query: 219 gaagttgacgaccgagcggtacgtggcgccgggcgtccaccccgcggggatgacgtcgct 278
|||||||||||| |||||||| ||| ||||||| ||| || |||||||||||| ||||
Sbjct: 44 gaagttgacgacggagcggtaggtgttgccgggctgccatccggcggggatgacgccgct 103
Query: 279 ggcgacgaccgtcctgccggagcccgacgtgaggcggac 317
|||||||| ||| |||||||||| || |||||||||||
Sbjct: 104 ggcgacgagggtcttgccggagccggaggtgaggcggac 142
Score = 73.8 bits (37), Expect = 2e-011
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 478 gccaagtagttcgcgttcgagccggcgtccaccttgaacgcgatgtccatcccgttccag 537
|||| |||||| ||||||||||||||||||||| |||| || | ||||| |||||||||
Sbjct: 294 gccaggtagttggcgttcgagccggcgtccaccctgaaggccacgtccacgccgttccag 353
Query: 538 ctgcacggcaccc 550
||||||||||||
Sbjct: 354 ttgcacggcaccc 366
Score = 61.9 bits (31), Expect = 6e-008
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 583 cggagctggtcggcctggccgggcttcgccatggc 617
||||||||||||||||||||||| |||||||||||
Sbjct: 515 cggagctggtcggcctggccgggtttcgccatggc 549
Score = 44.1 bits (22), Expect = 0.015
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 357 ccacaccgngccccacgactgctgcatcggcgcccacgccgccgc 401
|||||||| |||||| || ||| ||| |||||||||||||||||
Sbjct: 188 ccacaccgcgccccaggagcgctccatgggcgcccacgccgccgc 232
>gb|CW369801.1|CW369801 fsbb001f044g11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f044g11, DNA
sequence
Length = 743
Score = 85.7 bits (43), Expect = 4e-015
Identities = 85/99 (85%)
Strand = Plus / Minus
Query: 219 gaagttgacgaccgagcggtacgtggcgccgggcgtccaccccgcggggatgacgtcgct 278
|||||||||||| |||||||| ||| ||||||| ||| || |||||||||||| ||||
Sbjct: 109 gaagttgacgacggagcggtaggtgttgccgggctgccatccggcggggatgacgccgct 50
Query: 279 ggcgacgaccgtcctgccggagcccgacgtgaggcggac 317
|||||||| ||| |||||||||| || |||||||||||
Sbjct: 49 ggcgacgagggtcttgccggagccggaggtgaggcggac 11
>gb|BG049025.1|BG049025 OV1_22_C07.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 386
Score = 85.7 bits (43), Expect = 4e-015
Identities = 85/99 (85%)
Strand = Plus / Minus
Query: 219 gaagttgacgaccgagcggtacgtggcgccgggcgtccaccccgcggggatgacgtcgct 278
|||||||||||| |||||||| ||| ||||||| ||| || |||||||||||| ||||
Sbjct: 365 gaagttgacgacggagcggtaggtgttgccgggctgccatccggcggggatgacgccgct 306
Query: 279 ggcgacgaccgtcctgccggagcccgacgtgaggcggac 317
|||||||| ||| |||||||||| || |||||||||||
Sbjct: 305 ggcgacgagggtcttgccggagccggaggtgaggcggac 267
Score = 83.8 bits (42), Expect = 2e-014
Identities = 74/85 (87%)
Strand = Plus / Minus
Query: 478 gccaagtagttcgcgttcgagccggcgtccaccttgaacgcgatgtccatcccgttccag 537
|||| |||||| ||||||||||||||||||||| |||| || | ||||| |||||||||
Sbjct: 113 gccaggtagttggcgttcgagccggcgtccaccctgaaggccacgtccacgccgttccag 54
Query: 538 ctgcacggcacccgggngtactgga 562
||||||||||||| | ||||||||
Sbjct: 53 ttgcacggcacccgagtgtactgga 29
Score = 40.1 bits (20), Expect = 0.24
Identities = 37/43 (86%)
Strand = Plus / Minus
Query: 357 ccacaccgngccccacgactgctgcatcggcgcccacgccgcc 399
|||||||| |||||| || ||| ||| |||||||||||||||
Sbjct: 219 ccacaccgcgccccaggagcgctccatgggcgcccacgccgcc 177
>gb|CD219482.1|CD219482 CCC1_57_C04.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_57_C04_A007 3', mRNA sequence
Length = 580
Score = 85.7 bits (43), Expect = 4e-015
Identities = 85/99 (85%)
Strand = Plus / Minus
Query: 236 ggtacgtggcgccgggcgtccaccccgcggggatgacgtcgctggcgacgaccgtcctgc 295
|||| ||||||||||||||||| || ||||||||||||| ||||||||||| | | |||
Sbjct: 189 ggtaggtggcgccgggcgtccagccggcggggatgacgttgctggcgacgagctgcttgc 130
Query: 296 cggagcccgacgtgaggcggacggagaagggcccctgca 334
|||||| ||||| ||||||| ||| |||||| ||||||
Sbjct: 129 cggagctggacgtcaggcggatggacaagggcgcctgca 91
>gb|CD226829.1|CD226829 CCC1_48_E12.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_48_E12_A007 3', mRNA sequence
Length = 648
Score = 85.7 bits (43), Expect = 4e-015
Identities = 85/99 (85%)
Strand = Plus / Minus
Query: 236 ggtacgtggcgccgggcgtccaccccgcggggatgacgtcgctggcgacgaccgtcctgc 295
|||| ||||||||||||||||| || ||||||||||||| ||||||||||| | | |||
Sbjct: 257 ggtaggtggcgccgggcgtccagccggcggggatgacgttgctggcgacgagctgcttgc 198
Query: 296 cggagcccgacgtgaggcggacggagaagggcccctgca 334
|||||| ||||| ||||||| ||| |||||| ||||||
Sbjct: 197 cggagctggacgtcaggcggatggacaagggcgcctgca 159
>gb|CW233768.1|CW233768 104_687_11213622_116_37380_027 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11213622, DNA
sequence
Length = 712
Score = 77.8 bits (39), Expect = 1e-012
Identities = 84/99 (84%)
Strand = Plus / Plus
Query: 219 gaagttgacgaccgagcggtacgtggcgccgggcgtccaccccgcggggatgacgtcgct 278
|||||||||||| ||||||| ||| ||||||| ||| || |||||||||||| ||||
Sbjct: 202 gaagttgacgacgcagcggtaggtgttgccgggctgccatccggcggggatgacgccgct 261
Query: 279 ggcgacgaccgtcctgccggagcccgacgtgaggcggac 317
|||||||| ||| |||||||||| || |||||||||||
Sbjct: 262 ggcgacgagggtcttgccggagccggaggtgaggcggac 300
Score = 73.8 bits (37), Expect = 2e-011
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 478 gccaagtagttcgcgttcgagccggcgtccaccttgaacgcgatgtccatcccgttccag 537
|||| |||||| ||||||||||||||||||||| |||| || | ||||| |||||||||
Sbjct: 452 gccaggtagttggcgttcgagccggcgtccaccctgaaggccacgtccacgccgttccag 511
Query: 538 ctgcacggcaccc 550
||||||||||||
Sbjct: 512 ttgcacggcaccc 524
>gb|CW435340.1|CW435340 fsbb001f151h04k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f151h04, DNA
sequence
Length = 598
Score = 77.8 bits (39), Expect = 1e-012
Identities = 196/249 (78%)
Strand = Plus / Plus
Query: 254 tccaccccgcggggatgacgtcgctggcgacgaccgtcctgccggagcccgacgtgaggc 313
|||||||||| || ||| ||| || |||||||| | |||||| |||| | |||||||
Sbjct: 186 tccaccccgcaggtatggcgttgccggcgacgagcaccctgccagagctgaaggtgaggc 245
Query: 314 ggacggagaagggcccctgcagggtggcgccggagttgnacctccacaccgngccccacg 373
||| | |||||| ||||| ||| ||||||||||||| | ||||||| | ||||||||
Sbjct: 246 ggatgttgaaggggccctggaggacggcgccggagttgatcttccacacggcgccccacg 305
Query: 374 actgctgcatcggcgcccacgccgccgccggaccggctcgcccgggctgcatgagctcca 433
|||||||||||||| ||||| | ||| || ||| | | || ||||||||| ||||
Sbjct: 306 actgctgcatcggcacccactgccccgtcgtgccgccctgaccctgctgcatgatgtcca 365
Query: 434 cggacctgagctcgccgtcgccggactcgtactcgaccagcaccgccaagtagttcgcgt 493
|||| ||| |||| ||||| | ||||||||||| |||||| |||| |||||||| ||
Sbjct: 366 cggagtagaggtcgctgtcgctgtcctcgtactcgatcagcacggccaggtagttcgggt 425
Query: 494 tcgagccgg 502
| |||||||
Sbjct: 426 tggagccgg 434
>gb|BG047628.1|BG047628 OV1_26_C01.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 436
Score = 77.8 bits (39), Expect = 1e-012
Identities = 84/99 (84%)
Strand = Plus / Minus
Query: 219 gaagttgacgaccgagcggtacgtggcgccgggcgtccaccccgcggggatgacgtcgct 278
|||||||||||| |||||||| ||| ||||||| ||| || |||||||||||| ||||
Sbjct: 260 gaagttgacgacggagcggtaggtgttgccgggctgccatccggcggggatgacgccgct 201
Query: 279 ggcgacgaccgtcctgccggagcccgacgtgaggcggac 317
|||||||| ||| |||||||||| || ||||||||||
Sbjct: 200 ggcgacgagggtcttgccggagccggagttgaggcggac 162
Score = 44.1 bits (22), Expect = 0.015
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 357 ccacaccgngccccacgactgctgcatcggcgcccacgccgccgc 401
|||||||| |||||| || ||| ||| |||||||||||||||||
Sbjct: 116 ccacaccgcgccccaggagcgctccatgggcgcccacgccgccgc 72
>gb|CW217959.1|CW217959 104_651_11195928_148_37066_090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195928, DNA
sequence
Length = 715
Score = 75.8 bits (38), Expect = 4e-012
Identities = 114/140 (81%)
Strand = Plus / Plus
Query: 254 tccaccccgcggggatgacgtcgctggcgacgaccgtcctgccggagcccgacgtgaggc 313
|||||||||| || ||| ||| || |||||||| | |||||| |||| | |||||||
Sbjct: 423 tccaccccgcaggtatggcgttgccggcgacgagcaccctgccagagctgaaggtgaggc 482
Query: 314 ggacggagaagggcccctgcagggtggcgccggagttgnacctccacaccgngccccacg 373
||| | |||||| ||||| ||| ||||||||||||| | ||||||| | ||||||||
Sbjct: 483 ggatgttgaaggggccctggaggacggcgccggagttgatcttccacacggcgccccacg 542
Query: 374 actgctgcatcggcgcccac 393
|||||||||||||| |||||
Sbjct: 543 actgctgcatcggcacccac 562
>gb|CW233769.1|CW233769 104_687_11213622_148_37379_027 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11213622, DNA
sequence
Length = 710
Score = 73.8 bits (37), Expect = 2e-011
Identities = 64/73 (87%)
Strand = Plus / Minus
Query: 478 gccaagtagttcgcgttcgagccggcgtccaccttgaacgcgatgtccatcccgttccag 537
|||| |||||| ||||||||||||||||||||| |||| || | ||||| |||||||||
Sbjct: 615 gccaggtagttggcgttcgagccggcgtccaccctgaaggccacgtccacgccgttccag 556
Query: 538 ctgcacggcaccc 550
||||||||||||
Sbjct: 555 ttgcacggcaccc 543
Score = 61.9 bits (31), Expect = 6e-008
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 583 cggagctggtcggcctggccgggcttcgccatggc 617
||||||||||||||||||||||| |||||||||||
Sbjct: 398 cggagctggtcggcctggccgggtttcgccatggc 364
>gb|CW241491.1|CW241491 104_700_11218800_116_37544_086 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11218800, DNA
sequence
Length = 641
Score = 73.8 bits (37), Expect = 2e-011
Identities = 64/73 (87%)
Strand = Plus / Minus
Query: 478 gccaagtagttcgcgttcgagccggcgtccaccttgaacgcgatgtccatcccgttccag 537
|||| |||||| ||||||||||||||||||||| |||| || | ||||| |||||||||
Sbjct: 438 gccaggtagttggcgttcgagccggcgtccaccctgaaggccacgtccacgccgttccag 379
Query: 538 ctgcacggcaccc 550
||||||||||||
Sbjct: 378 ttgcacggcaccc 366
Score = 61.9 bits (31), Expect = 6e-008
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 583 cggagctggtcggcctggccgggcttcgccatggc 617
||||||||||||||||||||||| |||||||||||
Sbjct: 217 cggagctggtcggcctggccgggtttcgccatggc 183
Score = 56.0 bits (28), Expect = 4e-006
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 266 ggatgacgtcgctggcgacgaccgtcctgccggagcccgacgtgaggcggac 317
|||||||| |||||||||||| ||| |||||||||| || |||||||||||
Sbjct: 641 ggatgacgccgctggcgacgagggtcttgccggagccggaggtgaggcggac 590
Score = 44.1 bits (22), Expect = 0.015
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 357 ccacaccgngccccacgactgctgcatcggcgcccacgccgccgc 401
|||||||| |||||| || ||| ||| |||||||||||||||||
Sbjct: 544 ccacaccgcgccccaggagcgctccatgggcgcccacgccgccgc 500
>gb|BZ349112.1|BZ349112 hq87c03.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hq87c03 5', DNA sequence
Length = 436
Score = 71.9 bits (36), Expect = 7e-011
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 232 gagcggtacgtggcgccgggcgtccaccccgcggggatgacgtcgctggcgacgaccgtc 291
|||||||||||||||||||| |||| || ||||||||||||| | ||||||||| | |
Sbjct: 406 gagcggtacgtggcgccggggttccagccggcggggatgacgttgttggcgacgagcacc 347
Query: 292 ctgccggagcccgacgtgaggcggacggagaagggc 327
|||||||| | || |||||||||| |||||||||
Sbjct: 346 ttgccggagtcggaggtgaggcggagcgagaagggc 311
Score = 42.1 bits (21), Expect = 0.060
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 430 tccacggacctgagctcgccgtcgccggactcgtactcgaccagcaccgccaagtag 486
||||||| ||||| |||||||||||| |||| |||| ||||||||| | ||||||
Sbjct: 214 tccacggcgctgaggtcgccgtcgccgtcctcgaactccaccagcacctcgaagtag 158
>gb|CL165129.1|CL165129 104_359_10808375_114_31816_359 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10808375, DNA
sequence
Length = 758
Score = 71.9 bits (36), Expect = 7e-011
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 232 gagcggtacgtggcgccgggcgtccaccccgcggggatgacgtcgctggcgacgaccgtc 291
|||||||||||||||||||| |||| || ||||||||||||| | ||||||||| | |
Sbjct: 596 gagcggtacgtggcgccggggttccagccggcggggatgacgttgttggcgacgagcacc 537
Query: 292 ctgccggagcccgacgtgaggcggacggagaagggc 327
|||||||| | || |||||||||| |||||||||
Sbjct: 536 ttgccggagtcggaggtgaggcggagcgagaagggc 501
Score = 42.1 bits (21), Expect = 0.060
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 430 tccacggacctgagctcgccgtcgccggactcgtactcgaccagcaccgccaagtag 486
||||||| ||||| |||||||||||| |||| |||| ||||||||| | ||||||
Sbjct: 404 tccacggcgctgaggtcgccgtcgccgtcctcgaactccaccagcacctcgaagtag 348
Score = 40.1 bits (20), Expect = 0.24
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 586 agctggtcggcctggccgggcttcgccatggc 617
|||| ||||||| ||||||||||||||||||
Sbjct: 170 agcttgtcggccatgccgggcttcgccatggc 139
>gb|CW204078.1|CW204078 104_631_11186348_148_37094_066 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11186348, DNA
sequence
Length = 736
Score = 71.9 bits (36), Expect = 7e-011
Identities = 81/96 (84%)
Strand = Plus / Plus
Query: 232 gagcggtacgtggcgccgggcgtccaccccgcggggatgacgtcgctggcgacgaccgtc 291
|||||||||||||||||||| |||| || ||||||||||||| | ||||||||| | |
Sbjct: 332 gagcggtacgtggcgccggggttccagccggcggggatgacgttgttggcgacgagcacc 391
Query: 292 ctgccggagcccgacgtgaggcggacggagaagggc 327
|||||||| | || |||||||||| |||||||||
Sbjct: 392 ttgccggagtcggaggtgaggcggagcgagaagggc 427
Score = 42.1 bits (21), Expect = 0.060
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 430 tccacggacctgagctcgccgtcgccggactcgtactcgaccagcaccgccaagtag 486
||||||| ||||| |||||||||||| |||| |||| ||||||||| | ||||||
Sbjct: 524 tccacggcgctgaggtcgccgtcgccgtcctcgaactccaccagcacctcgaagtag 580
>gb|CW402616.1|CW402616 fsbb001f093p05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f093p05, DNA
sequence
Length = 658
Score = 71.9 bits (36), Expect = 7e-011
Identities = 81/96 (84%)
Strand = Plus / Plus
Query: 232 gagcggtacgtggcgccgggcgtccaccccgcggggatgacgtcgctggcgacgaccgtc 291
|||||||||||||||||||| |||| || ||||||||||||| | ||||||||| | |
Sbjct: 307 gagcggtacgtggcgccggggttccagccggcggggatgacgttgttggcgacgagcacc 366
Query: 292 ctgccggagcccgacgtgaggcggacggagaagggc 327
|||||||| | || |||||||||| |||||||||
Sbjct: 367 ttgccggagtcggaggtgaggcggagcgagaagggc 402
Score = 42.1 bits (21), Expect = 0.060
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 430 tccacggacctgagctcgccgtcgccggactcgtactcgaccagcaccgccaagtag 486
||||||| ||||| |||||||||||| |||| |||| ||||||||| | ||||||
Sbjct: 499 tccacggcgctgaggtcgccgtcgccgtcctcgaactccaccagcacctcgaagtag 555
>gb|BE357973.1|BE357973 DG1_23_H03.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 582
Score = 71.9 bits (36), Expect = 7e-011
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 232 gagcggtacgtggcgccgggcgtccaccccgcggggatgacgtcgctggcgacgaccgtc 291
|||||||||||||||||||| |||| || ||||||||||||| | ||||||||| | |
Sbjct: 274 gagcggtacgtggcgccggggttccagccggcggggatgacgttgttggcgacgagcacc 215
Query: 292 ctgccggagcccgacgtgaggcggacggagaagggc 327
|||||||| | || |||||||||| |||||||||
Sbjct: 214 ttgccggagtcggaggtgaggcggagcgagaagggc 179
Score = 42.1 bits (21), Expect = 0.060
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 430 tccacggacctgagctcgccgtcgccggactcgtactcgaccagcaccgccaagtag 486
||||||| ||||| |||||||||||| |||| |||| ||||||||| | ||||||
Sbjct: 82 tccacggcgctgaggtcgccgtcgccgtcctcgaactccaccagcacctcgaagtag 26
>gb|CD230488.1|CD230488 SS1_44_B08.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_44_B08_A012 3', mRNA sequence
Length = 503
Score = 71.9 bits (36), Expect = 7e-011
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 232 gagcggtacgtggcgccgggcgtccaccccgcggggatgacgtcgctggcgacgaccgtc 291
|||||||||||||||||||| |||| || ||||||||||||| | ||||||||| | |
Sbjct: 188 gagcggtacgtggcgccggggttccagccggcggggatgacgttgttggcgacgagcacc 129
Query: 292 ctgccggagcccgacgtgaggcggacggagaagggc 327
|||||||| | || |||||||||| |||||||||
Sbjct: 128 ttgccggagtcggaggtgaggcggagcgagaagggc 93
>gb|CD231800.1|CD231800 SS1_30_D03.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_30_D03_A012 3', mRNA sequence
Length = 604
Score = 71.9 bits (36), Expect = 7e-011
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 232 gagcggtacgtggcgccgggcgtccaccccgcggggatgacgtcgctggcgacgaccgtc 291
|||||||||||||||||||| |||| || ||||||||||||| | ||||||||| | |
Sbjct: 160 gagcggtacgtggcgccggggttccagccggcggggatgacgttgttggcgacgagcacc 101
Query: 292 ctgccggagcccgacgtgaggcggacggagaagggc 327
|||||||| | || |||||||||| |||||||||
Sbjct: 100 ttgccggagtcggaggtgaggcggagcgagaagggc 65
>gb|CD233638.1|CD233638 SS1_3_G02.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_3_G02_A012 3', mRNA sequence
Length = 542
Score = 71.9 bits (36), Expect = 7e-011
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 232 gagcggtacgtggcgccgggcgtccaccccgcggggatgacgtcgctggcgacgaccgtc 291
|||||||||||||||||||| |||| || ||||||||||||| | ||||||||| | |
Sbjct: 223 gagcggtacgtggcgccggggttccagccggcggggatgacgttgttggcgacgagcacc 164
Query: 292 ctgccggagcccgacgtgaggcggacggagaagggc 327
|||||||| | || |||||||||| |||||||||
Sbjct: 163 ttgccggagtcggaggtgaggcggagcgagaagggc 128
>gb|CD428756.1|CD428756 ETH1_36_H11.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_36_H11_A002 3', mRNA sequence
Length = 531
Score = 71.9 bits (36), Expect = 7e-011
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 232 gagcggtacgtggcgccgggcgtccaccccgcggggatgacgtcgctggcgacgaccgtc 291
|||||||||||||||||||| |||| || ||||||||||||| | ||||||||| | |
Sbjct: 232 gagcggtacgtggcgccggggttccagccggcggggatgacgttgttggcgacgagcacc 173
Query: 292 ctgccggagcccgacgtgaggcggacggagaagggc 327
|||||||| | || |||||||||| |||||||||
Sbjct: 172 ttgccggagtcggaggtgaggcggagcgagaagggc 137
>gb|CD432496.1|CD432496 ETH1_30_C04.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_30_C04_A002 3', mRNA sequence
Length = 657
Score = 71.9 bits (36), Expect = 7e-011
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 232 gagcggtacgtggcgccgggcgtccaccccgcggggatgacgtcgctggcgacgaccgtc 291
|||||||||||||||||||| |||| || ||||||||||||| | ||||||||| | |
Sbjct: 329 gagcggtacgtggcgccggggttccagccggcggggatgacgttgttggcgacgagcacc 270
Query: 292 ctgccggagcccgacgtgaggcggacggagaagggc 327
|||||||| | || |||||||||| |||||||||
Sbjct: 269 ttgccggagtcggaggtgaggcggagcgagaagggc 234
Score = 42.1 bits (21), Expect = 0.060
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 430 tccacggacctgagctcgccgtcgccggactcgtactcgaccagcaccgccaagtag 486
||||||| ||||| |||||||||||| |||| |||| ||||||||| | ||||||
Sbjct: 137 tccacggcgctgaggtcgccgtcgccgtcctcgaactccaccagcacctcgaagtag 81
>gb|CD462510.1|CD462510 ETH1_38_D10.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_38_D10_A002 3', mRNA sequence
Length = 669
Score = 71.9 bits (36), Expect = 7e-011
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 232 gagcggtacgtggcgccgggcgtccaccccgcggggatgacgtcgctggcgacgaccgtc 291
|||||||||||||||||||| |||| || ||||||||||||| | ||||||||| | |
Sbjct: 328 gagcggtacgtggcgccggggttccagccggcggggatgacgttgttggcgacgagcacc 269
Query: 292 ctgccggagcccgacgtgaggcggacggagaagggc 327
|||||||| | || |||||||||| |||||||||
Sbjct: 268 ttgccggagtcggaggtgaggcggagcgagaagggc 233
Score = 42.1 bits (21), Expect = 0.060
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 430 tccacggacctgagctcgccgtcgccggactcgtactcgaccagcaccgccaagtag 486
||||||| ||||| |||||||||||| |||| |||| ||||||||| | ||||||
Sbjct: 136 tccacggcgctgaggtcgccgtcgccgtcctcgaactccaccagcacctcgaagtag 80
>gb|CN125001.1|CN125001 RHOH1_8_F08.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_8_F08_A002 3', mRNA sequence
Length = 730
Score = 71.9 bits (36), Expect = 7e-011
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 232 gagcggtacgtggcgccgggcgtccaccccgcggggatgacgtcgctggcgacgaccgtc 291
|||||||||||||||||||| |||| || ||||||||||||| | ||||||||| | |
Sbjct: 403 gagcggtacgtggcgccggggttccagccggcggggatgacgttgttggcgacgagcacc 344
Query: 292 ctgccggagcccgacgtgaggcggacggagaagggc 327
|||||||| | || |||||||||| |||||||||
Sbjct: 343 ttgccggagtcggaagtgaggcggaacgagaagggc 308
Score = 40.1 bits (20), Expect = 0.24
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 586 agctggtcggcctggccgggcttcgccatggc 617
|||| ||||||| ||||||||||||||||||
Sbjct: 55 agcttgtcggccatgccgggcttcgccatggc 24
>gb|CD219585.1|CD219585 CCC1_57_C04.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_57_C04_A007 5', mRNA sequence
Length = 660
Score = 65.9 bits (33), Expect = 4e-009
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 534 ccagctgcacggcacccgggngtactggatcctgaggcgtccggcgctgcggagctggtc 593
|||| |||||||||| |||| ||||||||| |||| |||||| |||| |||| |||
Sbjct: 593 ccagttgcacggcacgcgggtgtactggatttggaggacgccggcgttgcgcagcttgtc 534
Query: 594 ggcctggccgggcttcgccatggc 617
|||||||||||| |||||||||||
Sbjct: 533 ggcctggccggggttcgccatggc 510
>gb|CD226852.1|CD226852 CCC1_48_E12.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_48_E12_A007 5', mRNA sequence
Length = 627
Score = 65.9 bits (33), Expect = 4e-009
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 534 ccagctgcacggcacccgggngtactggatcctgaggcgtccggcgctgcggagctggtc 593
|||| |||||||||| |||| ||||||||| |||| |||||| |||| |||| |||
Sbjct: 595 ccagttgcacggcacgcgggtgtactggatttggaggacgccggcgttgcgcagcttgtc 536
Query: 594 ggcctggccgggcttcgccatggc 617
|||||||||||| |||||||||||
Sbjct: 535 ggcctggccggggttcgccatggc 512
>gb|CW433265.1|CW433265 fsbb001f148g13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f148g13, DNA
sequence
Length = 768
Score = 63.9 bits (32), Expect = 2e-008
Identities = 80/96 (83%)
Strand = Plus / Plus
Query: 232 gagcggtacgtggcgccgggcgtccaccccgcggggatgacgtcgctggcgacgaccgtc 291
||||||||||| |||||||| |||| || ||||||||||||| | ||||||||| | |
Sbjct: 55 gagcggtacgttgcgccggggttccagccggcggggatgacgttgttggcgacgagcacc 114
Query: 292 ctgccggagcccgacgtgaggcggacggagaagggc 327
|||||||| | || |||||||||| |||||||||
Sbjct: 115 ttgccggagtcggaggtgaggcggagcgagaagggc 150
Score = 50.1 bits (25), Expect = 2e-004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 430 tccacggacctgagctcgccgtcgccggactcgtactcgaccagcaccgccaagtag 486
||||||| ||||| |||||||||||| |||| |||| ||||||||| ||||||||
Sbjct: 247 tccacggcgctgaggtcgccgtcgccgtcctcgaactccaccagcacctccaagtag 303
>gb|BF656823.1|BF656823 OV2_23_D07.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 552
Score = 63.9 bits (32), Expect = 2e-008
Identities = 80/96 (83%)
Strand = Plus / Minus
Query: 232 gagcggtacgtggcgccgggcgtccaccccgcggggatgacgtcgctggcgacgaccgtc 291
||||||||||| |||||||| |||| || ||||||||||||| | ||||||||| | |
Sbjct: 162 gagcggtacgttgcgccggggttccagccggcggggatgacgttgttggcgacgagcacc 103
Query: 292 ctgccggagcccgacgtgaggcggacggagaagggc 327
|||||||| | || |||||||||| |||||||||
Sbjct: 102 ttgccggagtcggaggtgaggcggagcgagaagggc 67
>gb|CX613415.1|CX613415 GABR1_8_B11.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_8_B11_A002 3', mRNA sequence
Length = 779
Score = 63.9 bits (32), Expect = 2e-008
Identities = 80/96 (83%)
Strand = Plus / Minus
Query: 232 gagcggtacgtggcgccgggcgtccaccccgcggggatgacgtcgctggcgacgaccgtc 291
||||||||||| |||||||| |||| || ||||||||||||| | ||||||||| | |
Sbjct: 331 gagcggtacgttgcgccggggttccagccggcggggatgacgttgttggcgacgagcacc 272
Query: 292 ctgccggagcccgacgtgaggcggacggagaagggc 327
|||||||| | || |||||||||| |||||||||
Sbjct: 271 ttgccggagtcggaggtgaggcggagcgagaagggc 236
Score = 50.1 bits (25), Expect = 2e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 430 tccacggacctgagctcgccgtcgccggactcgtactcgaccagcaccgccaagtag 486
||||||| ||||| |||||||||||| |||| |||| ||||||||| ||||||||
Sbjct: 139 tccacggcgctgaggtcgccgtcgccgtcctcgaactccaccagcacctccaagtag 83
>gb|DN552513.1|DN552513 pSHR-RT-A-H1_H09_C105 pSHR Sorghum halepense cDNA, mRNA sequence
Length = 1256
Score = 63.9 bits (32), Expect = 2e-008
Identities = 80/96 (83%)
Strand = Plus / Plus
Query: 232 gagcggtacgtggcgccgggcgtccaccccgcggggatgacgtcgctggcgacgaccgtc 291
||||||||||| |||||||| |||| || ||||||||||||| | ||||||||| | |
Sbjct: 347 gagcggtacgttgcgccggggttccagccggcggggatgacgttgttggcgacgagcacc 406
Query: 292 ctgccggagcccgacgtgaggcggacggagaagggc 327
|||||||| | || |||||||||| |||||||||
Sbjct: 407 ttgccggagtcggaggtgaggcggagcgagaagggc 442
Score = 44.1 bits (22), Expect = 0.015
Identities = 76/94 (80%)
Strand = Plus / Plus
Query: 430 tccacggacctgagctcgccgtcgccggactcgtactcgaccagcaccgccaagtagttc 489
||||||| ||||| |||||||||||| |||| |||| ||||||||| | ||||||
Sbjct: 539 tccacggcgctgaggtcgccgtcgccgtcctcgaactccaccagcacctcaaagtagaat 598
Query: 490 gcgttcgagccggcgtccaccttgaacgcgatgt 523
| ||||||||| ||||||| |||||||||||
Sbjct: 599 gggttcgagccctggtccacccggaacgcgatgt 632
>gb|BH245862.1|BH245862 pSB1435.2 S. bicolor BTx623 PstI-digested total genomic DNA library
Sorghum bicolor genomic clone pSB1435 similar to
putative beta-expansin (pollen allergen) (AAD32826), DNA
sequence
Length = 384
Score = 61.9 bits (31), Expect = 6e-008
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 583 cggagctggtcggcctggccgggcttcgccatggc 617
||||||||||||||||||||||| |||||||||||
Sbjct: 150 cggagctggtcggcctggccgggtttcgccatggc 184
>gb|CW377780.1|CW377780 fsbb001f056d24k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f056d24, DNA
sequence
Length = 751
Score = 61.9 bits (31), Expect = 6e-008
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 583 cggagctggtcggcctggccgggcttcgccatggc 617
||||||||||||||||||||||| |||||||||||
Sbjct: 51 cggagctggtcggcctggccgggtttcgccatggc 85
>gb|CW445527.1|CW445527 fsbb001f170l16k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f170l16, DNA
sequence
Length = 663
Score = 61.9 bits (31), Expect = 6e-008
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 583 cggagctggtcggcctggccgggcttcgccatggc 617
||||||||||||||||||||||| |||||||||||
Sbjct: 96 cggagctggtcggcctggccgggtttcgccatggc 130
>gb|BG048731.1|BG048731 OV1_22_C07.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 329
Score = 61.9 bits (31), Expect = 6e-008
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 583 cggagctggtcggcctggccgggcttcgccatggc 617
||||||||||||||||||||||| |||||||||||
Sbjct: 324 cggagctggtcggcctggccgggtttcgccatggc 290
>gb|BG048811.1|BG048811 OV1_23_C12.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 483
Score = 61.9 bits (31), Expect = 6e-008
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 583 cggagctggtcggcctggccgggcttcgccatggc 617
||||||||||||||||||||||| |||||||||||
Sbjct: 471 cggagctggtcggcctggccgggtttcgccatggc 437
>gb|CD229975.1|CD229975 SS1_40_F09.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_40_F09_A012 3', mRNA sequence
Length = 517
Score = 61.9 bits (31), Expect = 6e-008
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 232 gagcggtacgtggcgccgggcgtccaccccgcggggatgacgtcgctggcgacga 286
|||||||||||||||||||| |||| || ||||||||||||| | |||||||||
Sbjct: 68 gagcggtacgtggcgccggggttccagccggcggggatgacgttgttggcgacga 14
>gb|CN146372.1|CN146372 WOUND1_39_H03.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_39_H03_A002 5', mRNA sequence
Length = 666
Score = 56.0 bits (28), Expect = 4e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 574 ccggcgctgcggagctggtcggcctggccgggcttcgccatggc 617
|||||| |||| |||| ||||||||||||||| |||||||||||
Sbjct: 542 ccggcgttgcgcagcttgtcggcctggccggggttcgccatggc 499
>gb|BG159238.1|BG159238 OV2_5_B04.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 445
Score = 54.0 bits (27), Expect = 2e-005
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 232 gagcggtacgtggcgccgggcgtccaccccgcggggatgacgtcgctggcgacga 286
||||||||||| |||||||| |||| || ||||||||||||| | |||||||||
Sbjct: 74 gagcggtacgttgcgccggggttccagccggcggggatgacgttgttggcgacga 20
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 265,875
Number of Sequences: 832831
Number of extensions: 265875
Number of successful extensions: 73432
Number of sequences better than 0.5: 142
Number of HSP's better than 0.5 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73151
Number of HSP's gapped (non-prelim): 278
length of query: 621
length of database: 491,359,669
effective HSP length: 19
effective length of query: 602
effective length of database: 475,535,880
effective search space: 286272599760
effective search space used: 286272599760
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)