BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2647494.2.1
(730 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE362349.1|BE362349 DG1_86_B10.b1_A002 Dark Grown 1 (DG1... 432 e-119
gb|BF586678.1|BF586678 FM1_30_E02.b1_A003 Floral-Induced Me... 432 e-119
gb|CF486080.1|CF486080 POL1_35_C09.g1_A002 Pollen Sorghum b... 432 e-119
gb|CX606790.1|CX606790 ANR1_5_B01.b1_A002 Anaerobic roots S... 432 e-119
gb|CX606881.1|CX606881 ANR1_5_B01.g1_A002 Anaerobic roots S... 432 e-119
gb|DN551869.1|DN551869 pSPR-RT-MR-H1_F12_C273 pSPR Sorghum ... 432 e-119
gb|CD428630.1|CD428630 ETH1_27_E11.g1_A002 Ethylene-treated... 410 e-113
gb|BE362469.1|BE362469 DG1_86_B10.g1_A002 Dark Grown 1 (DG1... 400 e-110
gb|CD428516.1|CD428516 ETH1_27_E11.b1_A002 Ethylene-treated... 394 e-108
gb|BG559333.1|BG559333 RHIZ2_53_E07.b1_A003 Rhizome2 (RHIZ2... 389 e-106
gb|BF586799.1|BF586799 FM1_30_E02.g1_A003 Floral-Induced Me... 369 e-100
gb|BG241710.1|BG241710 RHIZ2_49_H05.b1_A003 Rhizome2 (RHIZ2... 357 9e-097
gb|BG465545.1|BG465545 RHIZ2_45_H03.b1_A003 Rhizome2 (RHIZ2... 357 9e-097
gb|BG559341.1|BG559341 RHIZ2_53_F03.b1_A003 Rhizome2 (RHIZ2... 357 9e-097
gb|BG241484.1|BG241484 RHIZ2_49_H05.g1_A003 Rhizome2 (RHIZ2... 301 5e-080
gb|AW923932.1|AW923932 WS1_31_G12.b1_A002 Water-stressed 1 ... 299 2e-079
gb|CD430066.1|CD430066 ETH1_13_H06.g1_A002 Ethylene-treated... 299 2e-079
gb|CN139896.1|CN139896 OX1_24_G04.g1_A002 Oxidatively-stres... 299 2e-079
gb|BG559016.1|BG559016 RHIZ2_53_E07.g1_A003 Rhizome2 (RHIZ2... 297 7e-079
gb|AW745521.1|AW745521 WS1_35_A05.b1_A002 Water-stressed 1 ... 293 1e-077
gb|BG463946.1|BG463946 EM1_52_G07.b1_A002 Embryo 1 (EM1) So... 293 1e-077
gb|BG559265.1|BG559265 RHIZ2_52_F09.b1_A003 Rhizome2 (RHIZ2... 293 1e-077
gb|CD211812.1|CD211812 HS1_64_D06.g1_A012 Heat-shocked seed... 293 1e-077
gb|CD222706.1|CD222706 CCC1_23_D07.g1_A007 Callus culture/c... 270 2e-070
gb|CD427769.1|CD427769 ETH1_34_G01.b1_A002 Ethylene-treated... 260 2e-067
gb|BG158055.1|BG158055 EM1_7_H04.b1_A002 Embryo 1 (EM1) Sor... 256 3e-066
gb|CN139818.1|CN139818 OX1_24_G04.b1_A002 Oxidatively-stres... 252 4e-065
gb|AW286703.2|AW286703 LG1_204_C06.b1_A002 Light Grown 1 (L... 244 1e-062
gb|AW679757.1|AW679757 WS1_31_G12.g1_A002 Water-stressed 1 ... 230 1e-058
gb|BG464027.1|BG464027 EM1_52_G07.g1_A002 Embryo 1 (EM1) So... 230 1e-058
gb|CD222465.1|CD222465 CCC1_22_E06.b1_A007 Callus culture/c... 228 6e-058
gb|CF761219.1|CF761219 DSAF1_72_E10.b1_A011 Drought-stresse... 228 6e-058
gb|CF770011.1|CF770011 DSBF1_5_D10.b1_A010 Drought-stressed... 228 6e-058
gb|CF770095.1|CF770095 DSBF1_5_D10.g1_A010 Drought-stressed... 228 6e-058
gb|BG559023.1|BG559023 RHIZ2_53_F03.g1_A003 Rhizome2 (RHIZ2... 226 2e-057
gb|BE365066.1|BE365066 PI1_24_D07.b1_A002 Pathogen induced ... 210 1e-052
gb|BE365067.1|BE365067 PI1_24_D06.b1_A002 Pathogen induced ... 210 1e-052
gb|BE365076.1|BE365076 PI1_24_F07.b1_A002 Pathogen induced ... 210 1e-052
gb|BE365077.1|BE365077 PI1_24_F06.b1_A002 Pathogen induced ... 210 1e-052
gb|BE365080.1|BE365080 PI1_24_E07.b1_A002 Pathogen induced ... 210 1e-052
gb|BE365081.1|BE365081 PI1_24_E06.b1_A002 Pathogen induced ... 210 1e-052
gb|BE365095.1|BE365095 PI1_24_C06.b1_A002 Pathogen induced ... 210 1e-052
gb|AW745172.1|AW745172 LG1_386_G05.g1_A002 Light Grown 1 (L... 208 5e-052
gb|BG465889.1|BG465889 RHIZ2_45_H03.g1_A003 Rhizome2 (RHIZ2... 204 8e-051
gb|CD427858.1|CD427858 ETH1_34_G01.g1_A002 Ethylene-treated... 190 1e-046
gb|BG558946.1|BG558946 RHIZ2_52_F09.g1_A003 Rhizome2 (RHIZ2... 182 3e-044
gb|CW301925.1|CW301925 104_785_11464455_116_36265_050 Sorgh... 174 7e-042
gb|BE593616.1|BE593616 WS1_98_H01.b1_A002 Water-stressed 1 ... 165 7e-039
gb|BE352961.1|BE352961 DG1_1_D02.g1_A002 Dark Grown 1 (DG1)... 159 4e-037
gb|CW301926.1|CW301926 104_785_11464455_148_36266_050 Sorgh... 153 3e-035
gb|BE365068.1|BE365068 PI1_24_D05.b1_A002 Pathogen induced ... 149 4e-034
gb|CF771911.1|CF771911 DSBF1_26_A02.g9_A010 Drought-stresse... 119 4e-025
gb|CW428058.1|CW428058 fsbb001f140f23f0 Sorghum methylation... 101 9e-020
gb|CD211715.1|CD211715 HS1_64_D06.b1_A012 Heat-shocked seed... 100 3e-019
gb|CW069103.1|CW069103 104_318_10525635_1_30095 Sorghum met... 84 2e-014
gb|CD221983.1|CD221983 CCC1_1_A01.b1_A007 Callus culture/ce... 82 8e-014
gb|BG049696.1|BG049696 EM1_7_H04.g1_A002 Embryo 1 (EM1) Sor... 80 3e-013
gb|CD222046.1|CD222046 CCC1_1_A01.g1_A007 Callus culture/ce... 78 1e-012
gb|CL161847.1|CL161847 104_353_10806005_116_31829_293 Sorgh... 62 8e-008
gb|CW042927.1|CW042927 104_277_10507398_114_30253 Sorghum m... 62 8e-008
gb|CW458302.1|CW458302 fsbb001f204i08f0 Sorghum methylation... 62 8e-008
gb|CW458303.1|CW458303 fsbb001f204i08k0 Sorghum methylation... 54 2e-005
gb|CW475999.1|CW475999 fsbb001f232k08k0 Sorghum methylation... 52 7e-005
gb|CW475998.1|CW475998 fsbb001f232k08f0 Sorghum methylation... 50 3e-004
gb|CW105794.1|CW105794 104_475_11013068_116_34457_078 Sorgh... 42 0.070
gb|CW128181.1|CW128181 104_509_11113866_116_34747_069 Sorgh... 42 0.070
gb|CW165789.1|CW165789 104_574_11152698_148_36477_075 Sorgh... 40 0.28
>gb|BE362349.1|BE362349 DG1_86_B10.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 605
Score = 432 bits (218), Expect = e-119
Identities = 389/446 (87%)
Strand = Plus / Minus
Query: 241 tacaggcgagtccactccttcgctgtctcaacagcttcagcttcgttggatttccagtgt 300
|||||||||||||||||||| ||||| ||||||||||| | || |||| |||||||||
Sbjct: 514 tacaggcgagtccactccttggctgtttcaacagcttctacctcattggctttccagtgc 455
Query: 301 ttcgcaatgttgtctgagagaggatcatctgggtttggggcgctcagaagtgcctgaatg 360
|| |||||||| || || ||||| |||||||| ||||| || ||||| || ||||| ||
Sbjct: 454 tttgcaatgttatcggaaagagggtcatctggatttggcgcactcaggagagcctgtata 395
Query: 361 ctcagtagaactgtacgtatctgaagagctggactccatttgtccttaagaatgtcgagg 420
|||| ||||| || || |||||||| || || |||||||||||||| ||||||||||||
Sbjct: 394 ctcaaaagaaccgtgcgaatctgaagtgccgggctccatttgtccttgagaatgtcgagg 335
Query: 421 catatcctaccaagcttgtcaatattaggatggtaaatttttgtgagaaatctaactttt 480
||||||||||||||||||||||| || ||||| ||||| || || ||||| ||||| |||
Sbjct: 334 catatcctaccaagcttgtcaatgttgggatgataaatcttggtcagaaacctaaccttt 275
Query: 481 ggggcagccattggatattcctcaggcaagaatagttcaagcttgaaaactccaccttca 540
||||||||||||||||||||||| || || || ||||||||||| |||||||| ||||||
Sbjct: 274 ggggcagccattggatattcctcgggtaaaaagagttcaagcttaaaaactcccccttca 215
Query: 541 tagggtgactgcgcggggccaaggatcatgacattgaagtaccgcatattctcctccgac 600
||||| |||||||| || ||||||||||| || |||||||| ||||| |||||||||||
Sbjct: 214 tagggcgactgcgccggcccaaggatcataacgttgaagtagcgcatgttctcctccgag 155
Query: 601 ggcgacgcgctaatccccggtgctggttcgctgagaagccgctgcgtctccttgatgatt 660
||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 154 ggcgacgcgctgatccccggtgctggctcgctgagcagccgctgcgtctccttgatgatc 95
Query: 661 cggcgcgggagattgctgttggccat 686
|| |||||||| ||||||||||||||
Sbjct: 94 cgccgcgggaggttgctgttggccat 69
>gb|BF586678.1|BF586678 FM1_30_E02.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 571
Score = 432 bits (218), Expect = e-119
Identities = 389/446 (87%)
Strand = Plus / Minus
Query: 241 tacaggcgagtccactccttcgctgtctcaacagcttcagcttcgttggatttccagtgt 300
|||||||||||||||||||| ||||| ||||||||||| | || |||| |||||||||
Sbjct: 481 tacaggcgagtccactccttggctgtttcaacagcttctacctcattggctttccagtgc 422
Query: 301 ttcgcaatgttgtctgagagaggatcatctgggtttggggcgctcagaagtgcctgaatg 360
|| |||||||| || || ||||| |||||||| ||||| || ||||| || ||||| ||
Sbjct: 421 tttgcaatgttatcggaaagagggtcatctggatttggcgcactcaggagagcctgtata 362
Query: 361 ctcagtagaactgtacgtatctgaagagctggactccatttgtccttaagaatgtcgagg 420
|||| ||||| || || |||||||| || || |||||||||||||| ||||||||||||
Sbjct: 361 ctcaaaagaaccgttcgaatctgaagtgccgggctccatttgtccttgagaatgtcgagg 302
Query: 421 catatcctaccaagcttgtcaatattaggatggtaaatttttgtgagaaatctaactttt 480
||||||||||||||||||||||| || ||||| ||||| || || ||||| ||||| |||
Sbjct: 301 catatcctaccaagcttgtcaatgttgggatgataaatcttggtcagaaacctaaccttt 242
Query: 481 ggggcagccattggatattcctcaggcaagaatagttcaagcttgaaaactccaccttca 540
||||||||||||||||||||||| || || || ||||||||||| |||||||| ||||||
Sbjct: 241 ggggcagccattggatattcctcgggtaaaaagagttcaagcttaaaaactcccccttca 182
Query: 541 tagggtgactgcgcggggccaaggatcatgacattgaagtaccgcatattctcctccgac 600
||||| |||||||| || ||||||||||| || |||||||| ||||| |||||||||||
Sbjct: 181 tagggcgactgcgccggcccaaggatcataacgttgaagtagcgcatgttctcctccgag 122
Query: 601 ggcgacgcgctaatccccggtgctggttcgctgagaagccgctgcgtctccttgatgatt 660
||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 121 ggcgacgcgctgatccccggtgctggctcgctgagcagccgctgcgtctccttgatgatc 62
Query: 661 cggcgcgggagattgctgttggccat 686
|| |||||||| ||||||||||||||
Sbjct: 61 cgccgcgggaggttgctgttggccat 36
>gb|CF486080.1|CF486080 POL1_35_C09.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_35_C09_A002 5', mRNA sequence
Length = 609
Score = 432 bits (218), Expect = e-119
Identities = 389/446 (87%)
Strand = Plus / Minus
Query: 241 tacaggcgagtccactccttcgctgtctcaacagcttcagcttcgttggatttccagtgt 300
|||||||||||||||||||| ||||| ||||||||||| | || |||| |||||||||
Sbjct: 552 tacaggcgagtccactccttggctgtttcaacagcttctacctcattggctttccagtgc 493
Query: 301 ttcgcaatgttgtctgagagaggatcatctgggtttggggcgctcagaagtgcctgaatg 360
|| |||||||| || || ||||| |||||||| ||||| || ||||| || ||||| ||
Sbjct: 492 tttgcaatgttatcggaaagagggtcatctggatttggcgcactcaggagagcctgtata 433
Query: 361 ctcagtagaactgtacgtatctgaagagctggactccatttgtccttaagaatgtcgagg 420
|||| ||||| || || |||||||| || || |||||||||||||| ||||||||||||
Sbjct: 432 ctcaaaagaaccgtgcgaatctgaagtgccgggctccatttgtccttgagaatgtcgagg 373
Query: 421 catatcctaccaagcttgtcaatattaggatggtaaatttttgtgagaaatctaactttt 480
||||||||||||||||||||||| || ||||| ||||| || || ||||| ||||| |||
Sbjct: 372 catatcctaccaagcttgtcaatgttgggatgataaatcttggtcagaaacctaaccttt 313
Query: 481 ggggcagccattggatattcctcaggcaagaatagttcaagcttgaaaactccaccttca 540
||||||||||||||||||||||| || || || ||||||||||| |||||||| ||||||
Sbjct: 312 ggggcagccattggatattcctcgggtaaaaagagttcaagcttaaaaactcccccttca 253
Query: 541 tagggtgactgcgcggggccaaggatcatgacattgaagtaccgcatattctcctccgac 600
||||| |||||||| || ||||||||||| || |||||||| ||||| |||||||||||
Sbjct: 252 tagggcgactgcgccggcccaaggatcataacgttgaagtagcgcatgttctcctccgag 193
Query: 601 ggcgacgcgctaatccccggtgctggttcgctgagaagccgctgcgtctccttgatgatt 660
||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 192 ggcgacgcgctgatccccggtgctggctcgctgagcagccgctgcgtctccttgatgatc 133
Query: 661 cggcgcgggagattgctgttggccat 686
|| |||||||| ||||||||||||||
Sbjct: 132 cgccgcgggaggttgctgttggccat 107
>gb|CX606790.1|CX606790 ANR1_5_B01.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_5_B01_A002 3', mRNA sequence
Length = 757
Score = 432 bits (218), Expect = e-119
Identities = 389/446 (87%)
Strand = Plus / Minus
Query: 241 tacaggcgagtccactccttcgctgtctcaacagcttcagcttcgttggatttccagtgt 300
|||||||||||||||||||| ||||| ||||||||||| | || |||| |||||||||
Sbjct: 508 tacaggcgagtccactccttggctgtttcaacagcttctacctcattggctttccagtgc 449
Query: 301 ttcgcaatgttgtctgagagaggatcatctgggtttggggcgctcagaagtgcctgaatg 360
|| |||||||| || || ||||| |||||||| ||||| || ||||| || ||||| ||
Sbjct: 448 tttgcaatgttatcggaaagagggtcatctggatttggcgcactcaggagagcctgtata 389
Query: 361 ctcagtagaactgtacgtatctgaagagctggactccatttgtccttaagaatgtcgagg 420
|||| ||||| || || |||||||| || || |||||||||||||| ||||||||||||
Sbjct: 388 ctcaaaagaaccgtgcgaatctgaagtgccgggctccatttgtccttgagaatgtcgagg 329
Query: 421 catatcctaccaagcttgtcaatattaggatggtaaatttttgtgagaaatctaactttt 480
||||||||||||||||||||||| || ||||| ||||| || || ||||| ||||| |||
Sbjct: 328 catatcctaccaagcttgtcaatgttgggatgataaatcttggtcagaaacctaaccttt 269
Query: 481 ggggcagccattggatattcctcaggcaagaatagttcaagcttgaaaactccaccttca 540
||||||||||||||||||||||| || || || ||||||||||| |||||||| ||||||
Sbjct: 268 ggggcagccattggatattcctcgggtaaaaagagttcaagcttaaaaactcccccttca 209
Query: 541 tagggtgactgcgcggggccaaggatcatgacattgaagtaccgcatattctcctccgac 600
||||| |||||||| || ||||||||||| || |||||||| ||||| |||||||||||
Sbjct: 208 tagggcgactgcgccggcccaaggatcataacgttgaagtagcgcatgttctcctccgag 149
Query: 601 ggcgacgcgctaatccccggtgctggttcgctgagaagccgctgcgtctccttgatgatt 660
||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 148 ggcgacgcgctgatccccggtgctggctcgctgagcagccgctgcgtctccttgatgatc 89
Query: 661 cggcgcgggagattgctgttggccat 686
|| |||||||| ||||||||||||||
Sbjct: 88 cgccgcgggaggttgctgttggccat 63
>gb|CX606881.1|CX606881 ANR1_5_B01.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_5_B01_A002 5', mRNA sequence
Length = 819
Score = 432 bits (218), Expect = e-119
Identities = 389/446 (87%)
Strand = Plus / Minus
Query: 241 tacaggcgagtccactccttcgctgtctcaacagcttcagcttcgttggatttccagtgt 300
|||||||||||||||||||| ||||| ||||||||||| | || |||| |||||||||
Sbjct: 603 tacaggcgagtccactccttggctgtttcaacagcttctacctcattggctttccagtgc 544
Query: 301 ttcgcaatgttgtctgagagaggatcatctgggtttggggcgctcagaagtgcctgaatg 360
|| |||||||| || || ||||| |||||||| ||||| || ||||| || ||||| ||
Sbjct: 543 tttgcaatgttatcggaaagagggtcatctggatttggcgcactcaggagagcctgtata 484
Query: 361 ctcagtagaactgtacgtatctgaagagctggactccatttgtccttaagaatgtcgagg 420
|||| ||||| || || |||||||| || || |||||||||||||| ||||||||||||
Sbjct: 483 ctcaaaagaaccgtgcgaatctgaagtgccgggctccatttgtccttgagaatgtcgagg 424
Query: 421 catatcctaccaagcttgtcaatattaggatggtaaatttttgtgagaaatctaactttt 480
||||||||||||||||||||||| || ||||| ||||| || || ||||| ||||| |||
Sbjct: 423 catatcctaccaagcttgtcaatgttgggatgataaatcttggtcagaaacctaaccttt 364
Query: 481 ggggcagccattggatattcctcaggcaagaatagttcaagcttgaaaactccaccttca 540
||||||||||||||||||||||| || || || ||||||||||| |||||||| ||||||
Sbjct: 363 ggggcagccattggatattcctcgggtaaaaagagttcaagcttaaaaactcccccttca 304
Query: 541 tagggtgactgcgcggggccaaggatcatgacattgaagtaccgcatattctcctccgac 600
||||| |||||||| || ||||||||||| || |||||||| ||||| |||||||||||
Sbjct: 303 tagggcgactgcgccggcccaaggatcataacgttgaagtagcgcatgttctcctccgag 244
Query: 601 ggcgacgcgctaatccccggtgctggttcgctgagaagccgctgcgtctccttgatgatt 660
||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 243 ggcgacgcgctgatccccggtgctggctcgctgagcagccgctgcgtctccttgatgatc 184
Query: 661 cggcgcgggagattgctgttggccat 686
|| |||||||| ||||||||||||||
Sbjct: 183 cgccgcgggaggttgctgttggccat 158
>gb|DN551869.1|DN551869 pSPR-RT-MR-H1_F12_C273 pSPR Sorghum propinquum cDNA, mRNA sequence
Length = 779
Score = 432 bits (218), Expect = e-119
Identities = 389/446 (87%)
Strand = Plus / Plus
Query: 241 tacaggcgagtccactccttcgctgtctcaacagcttcagcttcgttggatttccagtgt 300
|||||||||||||||||||| ||||| ||||||||||| | || |||| |||||||||
Sbjct: 241 tacaggcgagtccactccttggctgtttcaacagcttctacctcattggctttccagtgc 300
Query: 301 ttcgcaatgttgtctgagagaggatcatctgggtttggggcgctcagaagtgcctgaatg 360
|| |||||||| || || ||||| |||||||| ||||| || ||||| || ||||| ||
Sbjct: 301 tttgcaatgttatcggaaagagggtcatctggatttggcgcactcaggagagcctgtata 360
Query: 361 ctcagtagaactgtacgtatctgaagagctggactccatttgtccttaagaatgtcgagg 420
|||| ||||| || || |||||||| || || |||||||||||||| ||||||||||||
Sbjct: 361 ctcaaaagaaccgttcgaatctgaagtgccgggctccatttgtccttgagaatgtcgagg 420
Query: 421 catatcctaccaagcttgtcaatattaggatggtaaatttttgtgagaaatctaactttt 480
||||||||||||||||||||||| || ||||| ||||| || || ||||| ||||| |||
Sbjct: 421 catatcctaccaagcttgtcaatgttgggatgataaatcttggtcagaaacctaaccttt 480
Query: 481 ggggcagccattggatattcctcaggcaagaatagttcaagcttgaaaactccaccttca 540
||||||||||||||||||||||| || || || ||||||||||| |||||||| ||||||
Sbjct: 481 ggggcagccattggatattcctcgggtaaaaagagttcaagcttaaaaactcccccttca 540
Query: 541 tagggtgactgcgcggggccaaggatcatgacattgaagtaccgcatattctcctccgac 600
||||| |||||||| || ||||||||||| || |||||||| ||||| |||||||||||
Sbjct: 541 tagggcgactgcgccggcccaaggatcataacgttgaagtagcgcatgttctcctccgag 600
Query: 601 ggcgacgcgctaatccccggtgctggttcgctgagaagccgctgcgtctccttgatgatt 660
||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 601 ggcgacgcgctgatccccggtgctggctcgctgagcagccgctgcgtctccttgatgatc 660
Query: 661 cggcgcgggagattgctgttggccat 686
|| |||||||| ||||||||||||||
Sbjct: 661 cgccgcgggaggttgctgttggccat 686
>gb|CD428630.1|CD428630 ETH1_27_E11.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_27_E11_A002 5', mRNA sequence
Length = 703
Score = 410 bits (207), Expect = e-113
Identities = 388/447 (86%), Gaps = 1/447 (0%)
Strand = Plus / Minus
Query: 241 tacaggcgagtccactccttcgctgtctcaacagcttcagcttcgttggatttccagtgt 300
|||||||||||||||||||| ||||| ||||||||||| | || |||| |||||||||
Sbjct: 618 tacaggcgagtccactccttggctgtttcaacagcttctacctcattggctttccagtgc 559
Query: 301 ttcgcaatgttgtctgagagaggatcatctgggtttggggcgctcagaagtgcctgaatg 360
|| |||||||| || || ||||| |||||||| ||||| || ||||| || ||||| ||
Sbjct: 558 tttgcaatgttatcggaaagagggtcatctggatttggcgcactcaggagagcctgtata 499
Query: 361 ctcagtagaactgtacgtatctgaagagctggactccatttgtccttaagaatgtcgagg 420
|||| ||||| || || |||||||| || || |||||||||||||| ||||||||||||
Sbjct: 498 ctcaaaagaaccgtgcgaatctgaagtgccgggctccatttgtccttgagaatgtcgagg 439
Query: 421 catatcctaccaagcttgtcaatattaggatggtaaatttttgtgagaaatctaactttt 480
||||||||||||||||||||||| || ||||| ||||| || || ||||| ||||| |||
Sbjct: 438 catatcctaccaagcttgtcaatgttgggatgataaatcttggtcagaaacctaaccttt 379
Query: 481 ggggcagcc-attggatattcctcaggcaagaatagttcaagcttgaaaactccaccttc 539
||||||||| |||||||||||||| || || || ||||||||||| |||||||| ||||
Sbjct: 378 ggggcagcccattggatattcctcgggtaaaaagagttcaagcttaaaaactcccccttt 319
Query: 540 atagggtgactgcgcggggccaaggatcatgacattgaagtaccgcatattctcctccga 599
|||||| |||||||| || ||||||||||| || |||||||| ||||| |||||||||||
Sbjct: 318 atagggcgactgcgccggcccaaggatcataacgttgaagtagcgcatgttctcctccga 259
Query: 600 cggcgacgcgctaatccccggtgctggttcgctgagaagccgctgcgtctccttgatgat 659
||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 258 gggcgacgcgctgatccccggtgctggctcgctgagcagccgctgcgtctccttgatgat 199
Query: 660 tcggcgcgggagattgctgttggccat 686
|| |||||||| ||||||||||||||
Sbjct: 198 ccgccgcgggaggttgctgttggccat 172
>gb|BE362469.1|BE362469 DG1_86_B10.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 500
Score = 400 bits (202), Expect = e-110
Identities = 364/418 (87%)
Strand = Plus / Minus
Query: 241 tacaggcgagtccactccttcgctgtctcaacagcttcagcttcgttggatttccagtgt 300
|||||||||||||||||||| ||||| ||||||||||| | || |||| |||||||||
Sbjct: 418 tacaggcgagtccactccttggctgtttcaacagcttctacctcattggctttccagtgc 359
Query: 301 ttcgcaatgttgtctgagagaggatcatctgggtttggggcgctcagaagtgcctgaatg 360
|| |||||||| || || ||||| |||||||| ||||| || ||||| || ||||| ||
Sbjct: 358 tttgcaatgttatcggaaagagggtcatctggatttggcgcactcaggagagcctgtata 299
Query: 361 ctcagtagaactgtacgtatctgaagagctggactccatttgtccttaagaatgtcgagg 420
|||| ||||| || || |||||||| || || |||||||||||||| ||||||||||||
Sbjct: 298 ctcaaaagaaccgtgcgaatctgaagtgccgggctccatttgtccttgagaatgtcgagg 239
Query: 421 catatcctaccaagcttgtcaatattaggatggtaaatttttgtgagaaatctaactttt 480
||||||||||||||||||||||| || ||||| ||||| || || ||||| ||||| |||
Sbjct: 238 catatcctaccaagcttgtcaatgttgggatgataaatcttggtcagaaacctaaccttt 179
Query: 481 ggggcagccattggatattcctcaggcaagaatagttcaagcttgaaaactccaccttca 540
||||||||||||||||||||||| || || || ||||||||||| |||||||| ||||||
Sbjct: 178 ggggcagccattggatattcctcgggtaaaaagagttcaagcttaaaaactcccccttca 119
Query: 541 tagggtgactgcgcggggccaaggatcatgacattgaagtaccgcatattctcctccgac 600
||||| |||||||| || ||||||||||| || |||||||| ||||| |||||||||||
Sbjct: 118 tagggcgactgcgccggcccaaggatcataacgttgaagtagcgcatgttctcctccgag 59
Query: 601 ggcgacgcgctaatccccggtgctggttcgctgagaagccgctgcgtctccttgatga 658
||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 58 ggcgacgcgctgatccccggtgctggctcgctgagcagccgctgcgtctccttgatga 1
>gb|CD428516.1|CD428516 ETH1_27_E11.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_27_E11_A002 3', mRNA sequence
Length = 678
Score = 394 bits (199), Expect = e-108
Identities = 364/419 (86%)
Strand = Plus / Minus
Query: 241 tacaggcgagtccactccttcgctgtctcaacagcttcagcttcgttggatttccagtgt 300
|||||||||||||||||||| ||||| ||||||||||| | || |||| |||||||||
Sbjct: 419 tacaggcgagtccactccttggctgtttcaacagcttctacctcattggctttccagtgc 360
Query: 301 ttcgcaatgttgtctgagagaggatcatctgggtttggggcgctcagaagtgcctgaatg 360
|| |||||||| || || ||||| |||||||| ||||| || ||||| || ||||| ||
Sbjct: 359 tttgcaatgttatcggaaagagggtcatctggatttggcgcactcaggagagcctgtata 300
Query: 361 ctcagtagaactgtacgtatctgaagagctggactccatttgtccttaagaatgtcgagg 420
|||| ||||| || || |||||||| || || |||||||||||||| ||||||||||||
Sbjct: 299 ctcaaaagaaccgtgcgaatctgaagtgccgggctccatttgtccttgagaatgtcgagg 240
Query: 421 catatcctaccaagcttgtcaatattaggatggtaaatttttgtgagaaatctaactttt 480
||||||||||||||||||||||| || ||||| ||||| || || ||||| ||||| |||
Sbjct: 239 catatcctaccaagcttgtcaatgttgggatgataaatcttggtcagaaacctaaccttt 180
Query: 481 ggggcagccattggatattcctcaggcaagaatagttcaagcttgaaaactccaccttca 540
||||||||||||||||||||||| || || || ||||||||||| |||||||| |||| |
Sbjct: 179 ggggcagccattggatattcctcgggtaaaaagagttcaagcttaaaaactcccccttta 120
Query: 541 tagggtgactgcgcggggccaaggatcatgacattgaagtaccgcatattctcctccgac 600
||||| |||||||| || ||||||||||| || |||||||| ||||| |||||||||||
Sbjct: 119 tagggcgactgcgccggcccaaggatcataacgttgaagtagcgcatgttctcctccgag 60
Query: 601 ggcgacgcgctaatccccggtgctggttcgctgagaagccgctgcgtctccttgatgat 659
||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 59 ggcgacgcgctgatccccggtgctggctcgctgagcagccgctgcgtctccttgatgat 1
>gb|BG559333.1|BG559333 RHIZ2_53_E07.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 505
Score = 389 bits (196), Expect = e-106
Identities = 346/396 (87%)
Strand = Plus / Minus
Query: 291 tttccagtgtttcgcaatgttgtctgagagaggatcatctgggtttggggcgctcagaag 350
||||||||| || |||||||| || || ||||| |||||||| ||||| || ||||| ||
Sbjct: 501 tttccagtgctttgcaatgttatcggaaagagggtcatctggatttggcgcactcaggag 442
Query: 351 tgcctgaatgctcagtagaactgtacgtatctgaagagctggactccatttgtccttaag 410
||||| || |||| ||||| || || |||||||| || || |||||||||||||| ||
Sbjct: 441 agcctgtatactcaaaagaaccgttcgaatctgaagtgccgggctccatttgtccttgag 382
Query: 411 aatgtcgaggcatatcctaccaagcttgtcaatattaggatggtaaatttttgtgagaaa 470
||||||||||||||||||||||||||||||||| || ||||| ||||| || || |||||
Sbjct: 381 aatgtcgaggcatatcctaccaagcttgtcaatgttgggatgataaatcttggtcagaaa 322
Query: 471 tctaacttttggggcagccattggatattcctcaggcaagaatagttcaagcttgaaaac 530
||||| |||||||||||||||||||||||||| || || || ||||||||||| |||||
Sbjct: 321 cctaacctttggggcagccattggatattcctcgggtaaaaagagttcaagcttaaaaac 262
Query: 531 tccaccttcatagggtgactgcgcggggccaaggatcatgacattgaagtaccgcatatt 590
||| ||||||||||| |||||||| || ||||||||||| || |||||||| ||||| ||
Sbjct: 261 tcccccttcatagggcgactgcgccggcccaaggatcataacgttgaagtagcgcatgtt 202
Query: 591 ctcctccgacggcgacgcgctaatccccggtgctggttcgctgagaagccgctgcgtctc 650
||||||||| ||||||||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct: 201 ctcctccgagggcgacgcgctgatccccggtgctggctcgctgagcagccgctgcgtctc 142
Query: 651 cttgatgattcggcgcgggagattgctgttggccat 686
||||||||| || |||||||| ||||||||||||||
Sbjct: 141 cttgatgatccgccgcgggaggttgctgttggccat 106
>gb|BF586799.1|BF586799 FM1_30_E02.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 619
Score = 369 bits (186), Expect = e-100
Identities = 348/402 (86%)
Strand = Plus / Minus
Query: 241 tacaggcgagtccactccttcgctgtctcaacagcttcagcttcgttggatttccagtgt 300
|||||||||||||||||||| ||||| ||||||||||| | || |||| |||||||||
Sbjct: 402 tacaggcgagtccactccttggctgtttcaacagcttctacctcattggctttccagtgc 343
Query: 301 ttcgcaatgttgtctgagagaggatcatctgggtttggggcgctcagaagtgcctgaatg 360
|| |||||||| || || ||||| |||||||| ||||| || ||||| || ||||| ||
Sbjct: 342 tttgcaatgttatcggaaagagggtcatctggatttggcgcactcaggagagcctgtata 283
Query: 361 ctcagtagaactgtacgtatctgaagagctggactccatttgtccttaagaatgtcgagg 420
|||| ||||| || || |||||||| || || |||||||||||||| ||||||||||||
Sbjct: 282 ctcaaaagaaccgttcgaatctgaagtgccgggctccatttgtccttgagaatgtcgagg 223
Query: 421 catatcctaccaagcttgtcaatattaggatggtaaatttttgtgagaaatctaactttt 480
||||||||||||||||||||||| || ||||| ||||| || || ||||| ||||| |||
Sbjct: 222 catatcctaccaagcttgtcaatgttgggatgataaatcttggtcagaaacctaaccttt 163
Query: 481 ggggcagccattggatattcctcaggcaagaatagttcaagcttgaaaactccaccttca 540
||||||||||||||||||||||| || || || ||||||||||| |||||||| ||||||
Sbjct: 162 ggggcagccattggatattcctcgggtaaaaagagttcaagcttaaaaactcccccttca 103
Query: 541 tagggtgactgcgcggggccaaggatcatgacattgaagtaccgcatattctcctccgac 600
||||| |||||||| || ||||||||||| || |||||||| ||||| |||||||||||
Sbjct: 102 tagggcgactgcgccggcccaaggatcataacgttgaagtagcgcatgttctcctccgag 43
Query: 601 ggcgacgcgctaatccccggtgctggttcgctgagaagccgc 642
||||||||||| |||||||||||||| |||||||| ||||||
Sbjct: 42 ggcgacgcgctgatccccggtgctggctcgctgagcagccgc 1
>gb|BG241710.1|BG241710 RHIZ2_49_H05.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 420
Score = 357 bits (180), Expect = 9e-097
Identities = 276/308 (89%)
Strand = Plus / Minus
Query: 379 atctgaagagctggactccatttgtccttaagaatgtcgaggcatatcctaccaagcttg 438
|||||||| || || |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 413 atctgaagtgccgggctccatttgtccttgagaatgtcgaggcatatcctaccaagcttg 354
Query: 439 tcaatattaggatggtaaatttttgtgagaaatctaacttttggggcagccattggatat 498
||||| || ||||| ||||| || || ||||| ||||| |||||||||||||||||||||
Sbjct: 353 tcaatgttgggatgataaatcttggtcagaaacctaacctttggggcagccattggatat 294
Query: 499 tcctcaggcaagaatagttcaagcttgaaaactccaccttcatagggtgactgcgcgggg 558
||||| || || || ||||||||||| |||||||| ||||||||||| |||||||| ||
Sbjct: 293 tcctcgggtaaaaagagttcaagcttaaaaactcccccttcatagggcgactgcgccggc 234
Query: 559 ccaaggatcatgacattgaagtaccgcatattctcctccgacggcgacgcgctaatcccc 618
||||||||||| || |||||||| ||||| ||||||||||| ||||||||||| ||||||
Sbjct: 233 ccaaggatcataacgttgaagtagcgcatgttctcctccgagggcgacgcgctgatcccc 174
Query: 619 ggtgctggttcgctgagaagccgctgcgtctccttgatgattcggcgcgggagattgctg 678
|||||||| |||||||| ||||||||||||||||||||||| || |||||||| ||||||
Sbjct: 173 ggtgctggctcgctgagcagccgctgcgtctccttgatgatccgccgcgggaggttgctg 114
Query: 679 ttggccat 686
||||||||
Sbjct: 113 ttggccat 106
>gb|BG465545.1|BG465545 RHIZ2_45_H03.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 454
Score = 357 bits (180), Expect = 9e-097
Identities = 276/308 (89%)
Strand = Plus / Minus
Query: 379 atctgaagagctggactccatttgtccttaagaatgtcgaggcatatcctaccaagcttg 438
|||||||| || || |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 413 atctgaagtgccgggctccatttgtccttgagaatgtcgaggcatatcctaccaagcttg 354
Query: 439 tcaatattaggatggtaaatttttgtgagaaatctaacttttggggcagccattggatat 498
||||| || ||||| ||||| || || ||||| ||||| |||||||||||||||||||||
Sbjct: 353 tcaatgttgggatgataaatcttggtcagaaacctaacctttggggcagccattggatat 294
Query: 499 tcctcaggcaagaatagttcaagcttgaaaactccaccttcatagggtgactgcgcgggg 558
||||| || || || ||||||||||| |||||||| ||||||||||| |||||||| ||
Sbjct: 293 tcctcgggtaaaaagagttcaagcttaaaaactcccccttcatagggcgactgcgccggc 234
Query: 559 ccaaggatcatgacattgaagtaccgcatattctcctccgacggcgacgcgctaatcccc 618
||||||||||| || |||||||| ||||| ||||||||||| ||||||||||| ||||||
Sbjct: 233 ccaaggatcataacgttgaagtagcgcatgttctcctccgagggcgacgcgctgatcccc 174
Query: 619 ggtgctggttcgctgagaagccgctgcgtctccttgatgattcggcgcgggagattgctg 678
|||||||| |||||||| ||||||||||||||||||||||| || |||||||| ||||||
Sbjct: 173 ggtgctggctcgctgagcagccgctgcgtctccttgatgatccgccgcgggaggttgctg 114
Query: 679 ttggccat 686
||||||||
Sbjct: 113 ttggccat 106
>gb|BG559341.1|BG559341 RHIZ2_53_F03.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 448
Score = 357 bits (180), Expect = 9e-097
Identities = 276/308 (89%)
Strand = Plus / Minus
Query: 379 atctgaagagctggactccatttgtccttaagaatgtcgaggcatatcctaccaagcttg 438
|||||||| || || |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 413 atctgaagtgccgggctccatttgtccttgagaatgtcgaggcatatcctaccaagcttg 354
Query: 439 tcaatattaggatggtaaatttttgtgagaaatctaacttttggggcagccattggatat 498
||||| || ||||| ||||| || || ||||| ||||| |||||||||||||||||||||
Sbjct: 353 tcaatgttgggatgataaatcttggtcagaaacctaacctttggggcagccattggatat 294
Query: 499 tcctcaggcaagaatagttcaagcttgaaaactccaccttcatagggtgactgcgcgggg 558
||||| || || || ||||||||||| |||||||| ||||||||||| |||||||| ||
Sbjct: 293 tcctcgggtaaaaagagttcaagcttaaaaactcccccttcatagggcgactgcgccggc 234
Query: 559 ccaaggatcatgacattgaagtaccgcatattctcctccgacggcgacgcgctaatcccc 618
||||||||||| || |||||||| ||||| ||||||||||| ||||||||||| ||||||
Sbjct: 233 ccaaggatcataacgttgaagtagcgcatgttctcctccgagggcgacgcgctgatcccc 174
Query: 619 ggtgctggttcgctgagaagccgctgcgtctccttgatgattcggcgcgggagattgctg 678
|||||||| |||||||| ||||||||||||||||||||||| || |||||||| ||||||
Sbjct: 173 ggtgctggctcgctgagcagccgctgcgtctccttgatgatccgccgcgggaggttgctg 114
Query: 679 ttggccat 686
||||||||
Sbjct: 113 ttggccat 106
>gb|BG241484.1|BG241484 RHIZ2_49_H05.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 553
Score = 301 bits (152), Expect = 5e-080
Identities = 302/352 (85%)
Strand = Plus / Minus
Query: 241 tacaggcgagtccactccttcgctgtctcaacagcttcagcttcgttggatttccagtgt 300
|||||||||||||||||||| ||||| ||||||||||| | || |||| |||||||||
Sbjct: 352 tacaggcgagtccactccttggctgtttcaacagcttctacctcattggctttccagtgc 293
Query: 301 ttcgcaatgttgtctgagagaggatcatctgggtttggggcgctcagaagtgcctgaatg 360
|| |||||||| || || ||||| |||||||| ||||| || ||||| || ||||| ||
Sbjct: 292 tttgcaatgttatcggaaagagggtcatctggatttggcgcactcaggagagcctgtata 233
Query: 361 ctcagtagaactgtacgtatctgaagagctggactccatttgtccttaagaatgtcgagg 420
|||| ||||| || || |||||||| || || |||||||||||||| ||||||||||||
Sbjct: 232 ctcaaaagaaccgttcgaatctgaagtgccgggctccatttgtccttgagaatgtcgagg 173
Query: 421 catatcctaccaagcttgtcaatattaggatggtaaatttttgtgagaaatctaactttt 480
||||||||||||||||||||||| || ||||| ||||| || || ||||| ||||| |||
Sbjct: 172 catatcctaccaagcttgtcaatgttgggatgataaatcttggtcagaaacctaaccttt 113
Query: 481 ggggcagccattggatattcctcaggcaagaatagttcaagcttgaaaactccaccttca 540
||||||||||||||||||||||| || || || ||||||||||| |||||||| ||||||
Sbjct: 112 ggggcagccattggatattcctcgggtaaaaagagttcaagcttaaaaactcccccttca 53
Query: 541 tagggtgactgcgcggggccaaggatcatgacattgaagtaccgcatattct 592
||||| |||||||| || ||||||||||| || |||||||| ||||| ||||
Sbjct: 52 tagggcgactgcgccggcccaaggatcataacgttgaagtagcgcatgttct 1
>gb|AW923932.1|AW923932 WS1_31_G12.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 600
Score = 299 bits (151), Expect = 2e-079
Identities = 367/439 (83%)
Strand = Plus / Minus
Query: 250 gtccactccttcgctgtctcaacagcttcagcttcgttggatttccagtgtttcgcaatg 309
|||||||| || ||||| || |||||||||||||| || | |||||||| || || |
Sbjct: 551 gtccactctttagctgtttctacagcttcagcttcattagccttccagtgctttgccaca 492
Query: 310 ttgtctgagagaggatcatctgggtttggggcgctcagaagtgcctgaatgctcagtaga 369
||||| | || || ||||| |||||||| || || || | |||||| ||||||| || |
Sbjct: 491 ttgtcggcaagtgggtcatcagggtttggagcactaagcaatgcctggatgctcaataaa 432
Query: 370 actgtacgtatctgaagagctggactccatttgtccttaagaatgtcgaggcatatccta 429
||||| || |||||||| || |||||||| |||||||| | ||| || ||||||||||||
Sbjct: 431 actgttcgaatctgaagggcaggactccacttgtccttcaaaatatcaaggcatatccta 372
Query: 430 ccaagcttgtcaatattaggatggtaaatttttgtgagaaatctaacttttggggcagcc 489
|||||||||||||| ||||| || ||||||||||||||||| | ||| ||||| | ||||
Sbjct: 371 ccaagcttgtcaatgttagggtgataaatttttgtgagaaaacgaacctttggtggagcc 312
Query: 490 attggatattcctcaggcaagaatagttcaagcttgaaaactccaccttcatagggtgac 549
||||||||||| ||||||||||||| || |||||||||||||| || || || || |||
Sbjct: 311 attggatattcttcaggcaagaataactcgagcttgaaaactcctccctcgtatggcgac 252
Query: 550 tgcgcggggccaaggatcatgacattgaagtaccgcatattctcctccgacggcgacgcg 609
|||| || ||||||||||||||||||||||| ||||| |||||||| || ||||| ||
Sbjct: 251 tgcgatggtccaaggatcatgacattgaagtagcgcatgttctcctctgatggcgaggca 192
Query: 610 ctaatccccggtgctggttcgctgagaagccgctgcgtctccttgatgattcggcgcggg 669
|| || || || ||||| |||||||| | ||||||||||||||||||||| ||||| |||
Sbjct: 191 ctgattcctggagctggctcgctgagcaaccgctgcgtctccttgatgatgcggcggggg 132
Query: 670 agattgctgttggccatgg 688
|| ||||||||||||||||
Sbjct: 131 aggttgctgttggccatgg 113
>gb|CD430066.1|CD430066 ETH1_13_H06.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_13_H06_A002 5', mRNA sequence
Length = 644
Score = 299 bits (151), Expect = 2e-079
Identities = 367/439 (83%)
Strand = Plus / Minus
Query: 250 gtccactccttcgctgtctcaacagcttcagcttcgttggatttccagtgtttcgcaatg 309
|||||||| || ||||| || |||||||||||||| || | |||||||| || || |
Sbjct: 571 gtccactctttagctgtttctacagcttcagcttcattagccttccagtgctttgccaca 512
Query: 310 ttgtctgagagaggatcatctgggtttggggcgctcagaagtgcctgaatgctcagtaga 369
||||| | || || ||||| |||||||| || || || | |||||| ||||||| || |
Sbjct: 511 ttgtcggcaagtgggtcatcagggtttggagcactaagcaatgcctggatgctcaataaa 452
Query: 370 actgtacgtatctgaagagctggactccatttgtccttaagaatgtcgaggcatatccta 429
||||| || |||||||| || |||||||| |||||||| | ||| || ||||||||||||
Sbjct: 451 actgttcgaatctgaagggcaggactccacttgtccttcaaaatatcaaggcatatccta 392
Query: 430 ccaagcttgtcaatattaggatggtaaatttttgtgagaaatctaacttttggggcagcc 489
|||||||||||||| ||||| || ||||||||||||||||| | ||| ||||| | ||||
Sbjct: 391 ccaagcttgtcaatgttagggtgataaatttttgtgagaaaacgaacctttggtggagcc 332
Query: 490 attggatattcctcaggcaagaatagttcaagcttgaaaactccaccttcatagggtgac 549
||||||||||| ||||||||||||| || |||||||||||||| || || || || |||
Sbjct: 331 attggatattcttcaggcaagaataactcgagcttgaaaactcctccctcgtatggcgac 272
Query: 550 tgcgcggggccaaggatcatgacattgaagtaccgcatattctcctccgacggcgacgcg 609
|||| || ||||||||||||||||||||||| ||||| |||||||| || ||||| ||
Sbjct: 271 tgcgatggtccaaggatcatgacattgaagtagcgcatgttctcctctgatggcgaggca 212
Query: 610 ctaatccccggtgctggttcgctgagaagccgctgcgtctccttgatgattcggcgcggg 669
|| || || || ||||| |||||||| | ||||||||||||||||||||| ||||| |||
Sbjct: 211 ctgattcctggagctggctcgctgagcaaccgctgcgtctccttgatgatgcggcggggg 152
Query: 670 agattgctgttggccatgg 688
|| ||||||||||||||||
Sbjct: 151 aggttgctgttggccatgg 133
>gb|CN139896.1|CN139896 OX1_24_G04.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_24_G04_A002 5', mRNA sequence
Length = 794
Score = 299 bits (151), Expect = 2e-079
Identities = 367/439 (83%)
Strand = Plus / Minus
Query: 250 gtccactccttcgctgtctcaacagcttcagcttcgttggatttccagtgtttcgcaatg 309
|||||||| || ||||| || |||||||||||||| || | |||||||| || || |
Sbjct: 569 gtccactctttagctgtttctacagcttcagcttcattagccttccagtgctttgccaca 510
Query: 310 ttgtctgagagaggatcatctgggtttggggcgctcagaagtgcctgaatgctcagtaga 369
||||| | || || ||||| |||||||| || || || | |||||| ||||||| || |
Sbjct: 509 ttgtcggcaagtgggtcatcagggtttggagcactaagcaatgcctggatgctcaataaa 450
Query: 370 actgtacgtatctgaagagctggactccatttgtccttaagaatgtcgaggcatatccta 429
||||| || |||||||| || |||||||| |||||||| | ||| || ||||||||||||
Sbjct: 449 actgttcgaatctgaagggcaggactccacttgtccttcaaaatatcaaggcatatccta 390
Query: 430 ccaagcttgtcaatattaggatggtaaatttttgtgagaaatctaacttttggggcagcc 489
|||||||||||||| ||||| || ||||||||||||||||| | ||| ||||| | ||||
Sbjct: 389 ccaagcttgtcaatgttagggtgataaatttttgtgagaaaacgaacctttggtggagcc 330
Query: 490 attggatattcctcaggcaagaatagttcaagcttgaaaactccaccttcatagggtgac 549
||||||||||| ||||||||||||| || |||||||||||||| || || || || |||
Sbjct: 329 attggatattcttcaggcaagaataactcgagcttgaaaactcctccctcgtatggcgac 270
Query: 550 tgcgcggggccaaggatcatgacattgaagtaccgcatattctcctccgacggcgacgcg 609
|||| || ||||||||||||||||||||||| ||||| |||||||| || ||||| ||
Sbjct: 269 tgcgatggtccaaggatcatgacattgaagtagcgcatgttctcctctgatggcgaggca 210
Query: 610 ctaatccccggtgctggttcgctgagaagccgctgcgtctccttgatgattcggcgcggg 669
|| || || || ||||| |||||||| | ||||||||||||||||||||| ||||| |||
Sbjct: 209 ctgattcctggagctggctcgctgagcaaccgctgcgtctccttgatgatgcggcggggg 150
Query: 670 agattgctgttggccatgg 688
|| ||||||||||||||||
Sbjct: 149 aggttgctgttggccatgg 131
>gb|BG559016.1|BG559016 RHIZ2_53_E07.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 631
Score = 297 bits (150), Expect = 7e-079
Identities = 297/346 (85%)
Strand = Plus / Minus
Query: 241 tacaggcgagtccactccttcgctgtctcaacagcttcagcttcgttggatttccagtgt 300
|||||||||||||||||||| ||||| ||||||||||| | || |||| |||||||||
Sbjct: 346 tacaggcgagtccactccttggctgtttcaacagcttctacctcattggctttccagtgc 287
Query: 301 ttcgcaatgttgtctgagagaggatcatctgggtttggggcgctcagaagtgcctgaatg 360
|| |||||||| || || ||||| |||||||| ||||| || ||||| || ||||| ||
Sbjct: 286 tttgcaatgttatcggaaagagggtcatctggatttggcgcactcaggagagcctgtata 227
Query: 361 ctcagtagaactgtacgtatctgaagagctggactccatttgtccttaagaatgtcgagg 420
|||| ||||| || || |||||||| || || |||||||||||||| ||||||||||||
Sbjct: 226 ctcaaaagaaccgttcgaatctgaagtgccgggctccatttgtccttgagaatgtcgagg 167
Query: 421 catatcctaccaagcttgtcaatattaggatggtaaatttttgtgagaaatctaactttt 480
||||||||||||||||||||||| || ||||| ||||| || || ||||| ||||| |||
Sbjct: 166 catatcctaccaagcttgtcaatgttgggatgataaatcttggtcagaaacctaaccttt 107
Query: 481 ggggcagccattggatattcctcaggcaagaatagttcaagcttgaaaactccaccttca 540
||||||||||||||||||||||| || || || ||||||||||| |||||||| ||||||
Sbjct: 106 ggggcagccattggatattcctcgggtaaaaagagttcaagcttaaaaactcccccttca 47
Query: 541 tagggtgactgcgcggggccaaggatcatgacattgaagtaccgca 586
||||| |||||||| || ||||||||||| || |||||||| ||||
Sbjct: 46 tagggcgactgcgccggcccaaggatcataacgttgaagtagcgca 1
>gb|AW745521.1|AW745521 WS1_35_A05.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 549
Score = 293 bits (148), Expect = 1e-077
Identities = 310/364 (85%)
Strand = Plus / Minus
Query: 325 tcatctgggtttggggcgctcagaagtgcctgaatgctcagtagaactgtacgtatctga 384
||||| |||||||| || || || | |||||| ||||||| || |||||| || ||||||
Sbjct: 489 tcatcagggtttggagcactaagcaatgcctggatgctcaataaaactgttcgaatctga 430
Query: 385 agagctggactccatttgtccttaagaatgtcgaggcatatcctaccaagcttgtcaata 444
|| || |||||||| |||||||| | ||| || ||||||||||||||||||||||||||
Sbjct: 429 agggcaggactccacttgtccttcaaaatatcaaggcatatcctaccaagcttgtcaatg 370
Query: 445 ttaggatggtaaatttttgtgagaaatctaacttttggggcagccattggatattcctca 504
||||| || ||||||||||||||||| | ||| ||||| | ||||||||||||||| |||
Sbjct: 369 ttagggtgataaatttttgtgagaaaacgaacctttggtggagccattggatattcttca 310
Query: 505 ggcaagaatagttcaagcttgaaaactccaccttcatagggtgactgcgcggggccaagg 564
|||||||||| || |||||||||||||| || || || || ||||||| || ||||||
Sbjct: 309 ggcaagaataactcgagcttgaaaactcctccctcgtatggcgactgcgatggtccaagg 250
Query: 565 atcatgacattgaagtaccgcatattctcctccgacggcgacgcgctaatccccggtgct 624
||||||||||||||||| ||||| |||||||| || ||||| || || || || || |||
Sbjct: 249 atcatgacattgaagtagcgcatgttctcctctgatggcgaggcactgattcctggagct 190
Query: 625 ggttcgctgagaagccgctgcgtctccttgatgattcggcgcgggagattgctgttggcc 684
|| |||||||| | ||||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct: 189 ggctcgctgagcaaccgctgcgtctccttgatgatgcggcgggggaggttgctgttggcc 130
Query: 685 atgg 688
||||
Sbjct: 129 atgg 126
>gb|BG463946.1|BG463946 EM1_52_G07.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 517
Score = 293 bits (148), Expect = 1e-077
Identities = 310/364 (85%)
Strand = Plus / Minus
Query: 325 tcatctgggtttggggcgctcagaagtgcctgaatgctcagtagaactgtacgtatctga 384
||||| |||||||| || || || | |||||| ||||||| || |||||| || ||||||
Sbjct: 496 tcatcagggtttggagcactaagcaatgcctggatgctcaataaaactgttcgaatctga 437
Query: 385 agagctggactccatttgtccttaagaatgtcgaggcatatcctaccaagcttgtcaata 444
|| || |||||||| |||||||| | ||| || ||||||||||||||||||||||||||
Sbjct: 436 agggcaggactccacttgtccttcaaaatatcaaggcatatcctaccaagcttgtcaatg 377
Query: 445 ttaggatggtaaatttttgtgagaaatctaacttttggggcagccattggatattcctca 504
||||| || ||||||||||||||||| | ||| ||||| | ||||||||||||||| |||
Sbjct: 376 ttagggtgataaatttttgtgagaaaacgaacctttggtggagccattggatattcttca 317
Query: 505 ggcaagaatagttcaagcttgaaaactccaccttcatagggtgactgcgcggggccaagg 564
|||||||||| || |||||||||||||| || || || || ||||||| || ||||||
Sbjct: 316 ggcaagaataactcgagcttgaaaactcctccctcgtatggcgactgcgatggtccaagg 257
Query: 565 atcatgacattgaagtaccgcatattctcctccgacggcgacgcgctaatccccggtgct 624
||||||||||||||||| ||||| |||||||| || ||||| || || || || || |||
Sbjct: 256 atcatgacattgaagtagcgcatgttctcctctgatggcgaggcactgattcctggagct 197
Query: 625 ggttcgctgagaagccgctgcgtctccttgatgattcggcgcgggagattgctgttggcc 684
|| |||||||| | ||||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct: 196 ggctcgctgagcaaccgctgcgtctccttgatgatgcggcgggggaggttgctgttggcc 137
Query: 685 atgg 688
||||
Sbjct: 136 atgg 133
>gb|BG559265.1|BG559265 RHIZ2_52_F09.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 553
Score = 293 bits (148), Expect = 1e-077
Identities = 310/364 (85%)
Strand = Plus / Minus
Query: 325 tcatctgggtttggggcgctcagaagtgcctgaatgctcagtagaactgtacgtatctga 384
||||| |||||||| || || || | |||||| ||||||| || |||||| || ||||||
Sbjct: 493 tcatcagggtttggagcactaagcaatgcctggatgctcaataaaactgttcgaatctga 434
Query: 385 agagctggactccatttgtccttaagaatgtcgaggcatatcctaccaagcttgtcaata 444
|| || |||||||| |||||||| | ||| || ||||||||||||||||||||||||||
Sbjct: 433 agggcaggactccacttgtccttcaaaatatcaaggcatatcctaccaagcttgtcaatg 374
Query: 445 ttaggatggtaaatttttgtgagaaatctaacttttggggcagccattggatattcctca 504
||||| || ||||||||||||||||| | ||| ||||| | ||||||||||||||| |||
Sbjct: 373 ttagggtgataaatttttgtgagaaaacgaacctttggtggagccattggatattcttca 314
Query: 505 ggcaagaatagttcaagcttgaaaactccaccttcatagggtgactgcgcggggccaagg 564
|||||||||| || |||||||||||||| || || || || ||||||| || ||||||
Sbjct: 313 ggcaagaataactcgagcttgaaaactcctccctcgtatggcgactgcgatggtccaagg 254
Query: 565 atcatgacattgaagtaccgcatattctcctccgacggcgacgcgctaatccccggtgct 624
||||||||||||||||| ||||| |||||||| || ||||| || || || || || |||
Sbjct: 253 atcatgacattgaagtagcgcatgttctcctctgatggcgaggcactgattcctggagct 194
Query: 625 ggttcgctgagaagccgctgcgtctccttgatgattcggcgcgggagattgctgttggcc 684
|| |||||||| | ||||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct: 193 ggctcgctgagcaaccgctgcgtctccttgatgatgcggcgggggaggttgctgttggcc 134
Query: 685 atgg 688
||||
Sbjct: 133 atgg 130
>gb|CD211812.1|CD211812 HS1_64_D06.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_64_D06_A012 5', mRNA sequence
Length = 555
Score = 293 bits (148), Expect = 1e-077
Identities = 310/364 (85%)
Strand = Plus / Minus
Query: 325 tcatctgggtttggggcgctcagaagtgcctgaatgctcagtagaactgtacgtatctga 384
||||| |||||||| || || || | |||||| ||||||| || |||||| || ||||||
Sbjct: 512 tcatcagggtttggagcactaagcaatgcctggatgctcaataaaactgttcgaatctga 453
Query: 385 agagctggactccatttgtccttaagaatgtcgaggcatatcctaccaagcttgtcaata 444
|| || |||||||| |||||||| | ||| || ||||||||||||||||||||||||||
Sbjct: 452 agggcaggactccacttgtccttcaaaatatcaaggcatatcctaccaagcttgtcaatg 393
Query: 445 ttaggatggtaaatttttgtgagaaatctaacttttggggcagccattggatattcctca 504
||||| || ||||||||||||||||| | ||| ||||| | ||||||||||||||| |||
Sbjct: 392 ttagggtgataaatttttgtgagaaaacgaacctttggtggagccattggatattcttca 333
Query: 505 ggcaagaatagttcaagcttgaaaactccaccttcatagggtgactgcgcggggccaagg 564
|||||||||| || |||||||||||||| || || || || ||||||| || ||||||
Sbjct: 332 ggcaagaataactcgagcttgaaaactcctccctcgtatggcgactgcgatggtccaagg 273
Query: 565 atcatgacattgaagtaccgcatattctcctccgacggcgacgcgctaatccccggtgct 624
||||||||||||||||| ||||| |||||||| || ||||| || || || || || |||
Sbjct: 272 atcatgacattgaagtagcgcatgttctcctctgatggcgaggcactgattcctggagct 213
Query: 625 ggttcgctgagaagccgctgcgtctccttgatgattcggcgcgggagattgctgttggcc 684
|| |||||||| | ||||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct: 212 ggctcgctgagcaaccgctgcgtctccttgatgatgcggcgggggaggttgctgttggcc 153
Query: 685 atgg 688
||||
Sbjct: 152 atgg 149
>gb|CD222706.1|CD222706 CCC1_23_D07.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_23_D07_A007 5', mRNA sequence
Length = 667
Score = 270 bits (136), Expect = 2e-070
Identities = 346/416 (83%)
Strand = Plus / Minus
Query: 250 gtccactccttcgctgtctcaacagcttcagcttcgttggatttccagtgtttcgcaatg 309
|||||||| || ||||| || |||||||||||||| || | |||||||| || || |
Sbjct: 458 gtccactctttagctgtttctacagcttcagcttcattagccttccagtgctttgccaca 399
Query: 310 ttgtctgagagaggatcatctgggtttggggcgctcagaagtgcctgaatgctcagtaga 369
||||| | || || ||||| |||||||| || || || | |||||| ||||||| || |
Sbjct: 398 ttgtcggcaagtgggtcatcagggtttggagcactaagcaatgcctggatgctcaataaa 339
Query: 370 actgtacgtatctgaagagctggactccatttgtccttaagaatgtcgaggcatatccta 429
||||| || |||||||| || |||||||| |||||||| | ||| || ||||||||||||
Sbjct: 338 actgttcgaatctgaagggcaggactccacttgtccttcaaaatatcaaggcatatccta 279
Query: 430 ccaagcttgtcaatattaggatggtaaatttttgtgagaaatctaacttttggggcagcc 489
|||||||||||||| ||||| || ||||||||||||||||| | ||| ||||| | ||||
Sbjct: 278 ccaagcttgtcaatgttagggtgataaatttttgtgagaaaacgaacctttggtggagcc 219
Query: 490 attggatattcctcaggcaagaatagttcaagcttgaaaactccaccttcatagggtgac 549
||||||||||| ||||||||||||| || |||||||||||||| || || || || |||
Sbjct: 218 attggatattcttcaggcaagaataactcgagcttgaaaactcctccctcgtatggcgac 159
Query: 550 tgcgcggggccaaggatcatgacattgaagtaccgcatattctcctccgacggcgacgcg 609
|||| || ||||||||||||||||||||||| ||||| |||||||| || ||||| ||
Sbjct: 158 tgcgatggtccaaggatcatgacattgaagtagcgcatgttctcctctgatggcgaggca 99
Query: 610 ctaatccccggtgctggttcgctgagaagccgctgcgtctccttgatgattcggcg 665
|| || || || ||||| |||||||| | ||||||||||||||||||||| |||||
Sbjct: 98 ctgattcctggagctggctcgctgagcaaccgctgcgtctccttgatgatgcggcg 43
>gb|CD427769.1|CD427769 ETH1_34_G01.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_34_G01_A002 3', mRNA sequence
Length = 552
Score = 260 bits (131), Expect = 2e-067
Identities = 260/303 (85%)
Strand = Plus / Minus
Query: 241 tacaggcgagtccactccttcgctgtctcaacagcttcagcttcgttggatttccagtgt 300
|||||||||||||||||||| ||||| ||||||||||| | || |||| |||||||||
Sbjct: 303 tacaggcgagtccactccttggctgtttcaacagcttctacctcattggctttccagtgc 244
Query: 301 ttcgcaatgttgtctgagagaggatcatctgggtttggggcgctcagaagtgcctgaatg 360
|| |||||||| || || ||||| |||||||| ||||| || ||||| || ||||| ||
Sbjct: 243 tttgcaatgttatcggaaagagggtcatctggatttggcgcactcaggagagcctgtata 184
Query: 361 ctcagtagaactgtacgtatctgaagagctggactccatttgtccttaagaatgtcgagg 420
|||| ||||| || || |||||||| || || |||||||||||||| ||||||||||||
Sbjct: 183 ctcaaaagaaccgtgcgaatctgaagtgccgggctccatttgtccttgagaatgtcgagg 124
Query: 421 catatcctaccaagcttgtcaatattaggatggtaaatttttgtgagaaatctaactttt 480
||||||||||||||||||||||| || ||||| ||||| || || ||||| ||||| |||
Sbjct: 123 catatcctaccaagcttgtcaatgttgggatgataaatcttggtcagaaacctaaccttt 64
Query: 481 ggggcagccattggatattcctcaggcaagaatagttcaagcttgaaaactccaccttca 540
||||||||||||||||||||||| || || || ||||||||||| |||||||| ||||||
Sbjct: 63 ggggcagccattggatattcctcgggtaaaaagagttcaagcttaaaaactcccccttca 4
Query: 541 tag 543
|||
Sbjct: 3 tag 1
>gb|BG158055.1|BG158055 EM1_7_H04.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 424
Score = 256 bits (129), Expect = 3e-066
Identities = 249/289 (86%)
Strand = Plus / Minus
Query: 400 ttgtccttaagaatgtcgaggcatatcctaccaagcttgtcaatattaggatggtaaatt 459
|||||||| | ||| || |||||||||||||||||||||||||| ||||| || ||||||
Sbjct: 421 ttgtccttcaaaatatcaaggcatatcctaccaagcttgtcaatgttagggtgataaatt 362
Query: 460 tttgtgagaaatctaacttttggggcagccattggatattcctcaggcaagaatagttca 519
||||||||||| | ||| ||||| | ||||||||||||||| ||||||||||||| ||
Sbjct: 361 tttgtgagaaaacgaacctttggtggagccattggatattcttcaggcaagaataactcg 302
Query: 520 agcttgaaaactccaccttcatagggtgactgcgcggggccaaggatcatgacattgaag 579
|||||||||||||| || || || || ||||||| || |||||||||||||||||||||
Sbjct: 301 agcttgaaaactcctccctcgtatggcgactgcgatggtccaaggatcatgacattgaag 242
Query: 580 taccgcatattctcctccgacggcgacgcgctaatccccggtgctggttcgctgagaagc 639
|| ||||| |||||||| || ||||| || || || || || ||||| |||||||| | |
Sbjct: 241 tagcgcatgttctcctctgatggcgaggcactgattcctggagctggctcgctgagcaac 182
Query: 640 cgctgcgtctccttgatgattcggcgcgggagattgctgttggccatgg 688
|||||||||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct: 181 cgctgcgtctccttgatgatgcggcgggggaggttgctgttggccatgg 133
>gb|CN139818.1|CN139818 OX1_24_G04.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_24_G04_A002 3', mRNA sequence
Length = 710
Score = 252 bits (127), Expect = 4e-065
Identities = 334/403 (82%)
Strand = Plus / Minus
Query: 250 gtccactccttcgctgtctcaacagcttcagcttcgttggatttccagtgtttcgcaatg 309
|||||||| || ||||| || |||||||||||||| || | |||||||| || || |
Sbjct: 403 gtccactctttagctgtttctacagcttcagcttcattagccttccagtgctttgccaca 344
Query: 310 ttgtctgagagaggatcatctgggtttggggcgctcagaagtgcctgaatgctcagtaga 369
||||| | || || ||||| |||||||| || || || | |||||| ||||||| || |
Sbjct: 343 ttgtcggcaagtgggtcatcagggtttggagcactaagcaatgcctggatgctcaataaa 284
Query: 370 actgtacgtatctgaagagctggactccatttgtccttaagaatgtcgaggcatatccta 429
||||| || |||||||| || |||||||| |||||||| | ||| || ||||||||||||
Sbjct: 283 actgttcgaatctgaagggcaggactccacttgtccttcaaaatatcaaggcatatccta 224
Query: 430 ccaagcttgtcaatattaggatggtaaatttttgtgagaaatctaacttttggggcagcc 489
|||||||||||||| ||||| || ||||||||||||||||| | ||| ||||| | ||||
Sbjct: 223 ccaagcttgtcaatgttagggtgataaatttttgtgagaaaacgaacctttggtggagcc 164
Query: 490 attggatattcctcaggcaagaatagttcaagcttgaaaactccaccttcatagggtgac 549
||||||||||| ||||||||||||| || |||||||||||||| || || || || |||
Sbjct: 163 attggatattcttcaggcaagaataactcgagcttgaaaactcctccctcgtatggcgac 104
Query: 550 tgcgcggggccaaggatcatgacattgaagtaccgcatattctcctccgacggcgacgcg 609
|||| || ||||||||||||||||||||||| ||||| |||||||| || ||||| ||
Sbjct: 103 tgcgatggtccaaggatcatgacattgaagtagcgcatgttctcctctgatggcgaggca 44
Query: 610 ctaatccccggtgctggttcgctgagaagccgctgcgtctcct 652
|| || || || ||||| |||||||| | ||||||||||||||
Sbjct: 43 ctgattcctggagctggctcgctgagcaaccgctgcgtctcct 1
>gb|AW286703.2|AW286703 LG1_204_C06.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 322
Score = 244 bits (123), Expect = 1e-062
Identities = 183/203 (90%)
Strand = Plus / Minus
Query: 484 gcagccattggatattcctcaggcaagaatagttcaagcttgaaaactccaccttcatag 543
|||||||||||||||||||| || || || ||||||||||| |||||||| |||||||||
Sbjct: 322 gcagccattggatattcctcgggtaaaaagagttcaagcttaaaaactcccccttcatag 263
Query: 544 ggtgactgcgcggggccaaggatcatgacattgaagtaccgcatattctcctccgacggc 603
|| |||||||| || ||||||||||| || |||||||| ||||| ||||||||||| |||
Sbjct: 262 ggcgactgcgccggcccaaggatcataacgttgaagtagcgcatgttctcctccgagggc 203
Query: 604 gacgcgctaatccccggtgctggttcgctgagaagccgctgcgtctccttgatgattcgg 663
|||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct: 202 gacgcgctgatccccggtgctggctcgctgagcagccgctgcgtctccttgatgatccgc 143
Query: 664 cgcgggagattgctgttggccat 686
|||||||| ||||||||||||||
Sbjct: 142 cgcgggaggttgctgttggccat 120
>gb|AW679757.1|AW679757 WS1_31_G12.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 686
Score = 230 bits (116), Expect = 1e-058
Identities = 296/356 (83%)
Strand = Plus / Minus
Query: 250 gtccactccttcgctgtctcaacagcttcagcttcgttggatttccagtgtttcgcaatg 309
|||||||| || ||||| || |||||||||||||| || | |||||||| || || |
Sbjct: 378 gtccactctttagctgtttctacagcttcagcttcattagccttccagtgctttgccaca 319
Query: 310 ttgtctgagagaggatcatctgggtttggggcgctcagaagtgcctgaatgctcagtaga 369
||||| | || || ||||| |||||||| || || || | |||||| ||||||| || |
Sbjct: 318 ttgtcggcaagtgggtcatcagggtttggagcactaagcaatgcctggatgctcaataaa 259
Query: 370 actgtacgtatctgaagagctggactccatttgtccttaagaatgtcgaggcatatccta 429
||||| || |||||||| || |||||||| |||||||| | ||| || ||||||||||||
Sbjct: 258 actgttcgaatctgaagggcaggactccacttgtccttcaaaatatcaaggcatatccta 199
Query: 430 ccaagcttgtcaatattaggatggtaaatttttgtgagaaatctaacttttggggcagcc 489
|||||||||||||| ||||| || ||||||||||||||||| | ||| ||||| | ||||
Sbjct: 198 ccaagcttgtcaatgttagggtgataaatttttgtgagaaaacgaacctttggtggagcc 139
Query: 490 attggatattcctcaggcaagaatagttcaagcttgaaaactccaccttcatagggtgac 549
||||||||||| ||||||||||||| || |||||||||||||| || || || || |||
Sbjct: 138 attggatattcttcaggcaagaataactcgagcttgaaaactcctccctcgtatggcgac 79
Query: 550 tgcgcggggccaaggatcatgacattgaagtaccgcatattctcctccgacggcga 605
|||| || ||||||||||||||||||||||| ||||| |||||||| || |||||
Sbjct: 78 tgcgatggtccaaggatcatgacattgaagtagcgcatgttctcctctgatggcga 23
>gb|BG464027.1|BG464027 EM1_52_G07.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 657
Score = 230 bits (116), Expect = 1e-058
Identities = 296/356 (83%)
Strand = Plus / Minus
Query: 250 gtccactccttcgctgtctcaacagcttcagcttcgttggatttccagtgtttcgcaatg 309
|||||||| || ||||| || |||||||||||||| || | |||||||| || || |
Sbjct: 357 gtccactctttagctgtttctacagcttcagcttcattagccttccagtgctttgccaca 298
Query: 310 ttgtctgagagaggatcatctgggtttggggcgctcagaagtgcctgaatgctcagtaga 369
||||| | || || ||||| |||||||| || || || | |||||| ||||||| || |
Sbjct: 297 ttgtcggcaagtgggtcatcagggtttggagcactaagcaatgcctggatgctcaataaa 238
Query: 370 actgtacgtatctgaagagctggactccatttgtccttaagaatgtcgaggcatatccta 429
||||| || |||||||| || |||||||| |||||||| | ||| || ||||||||||||
Sbjct: 237 actgttcgaatctgaagggcaggactccacttgtccttcaaaatatcaaggcatatccta 178
Query: 430 ccaagcttgtcaatattaggatggtaaatttttgtgagaaatctaacttttggggcagcc 489
|||||||||||||| ||||| || ||||||||||||||||| | ||| ||||| | ||||
Sbjct: 177 ccaagcttgtcaatgttagggtgataaatttttgtgagaaaacgaacctttggtggagcc 118
Query: 490 attggatattcctcaggcaagaatagttcaagcttgaaaactccaccttcatagggtgac 549
||||||||||| ||||||||||||| || |||||||||||||| || || || || |||
Sbjct: 117 attggatattcttcaggcaagaataactcgagcttgaaaactcctccctcgtatggcgac 58
Query: 550 tgcgcggggccaaggatcatgacattgaagtaccgcatattctcctccgacggcga 605
|||| || ||||||||||||||||||||||| ||||| |||||||| || |||||
Sbjct: 57 tgcgatggtccaaggatcatgacattgaagtagcgcatgttctcctctgatggcga 2
>gb|CD222465.1|CD222465 CCC1_22_E06.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_22_E06_A007 3', mRNA sequence
Length = 647
Score = 228 bits (115), Expect = 6e-058
Identities = 289/347 (83%)
Strand = Plus / Minus
Query: 250 gtccactccttcgctgtctcaacagcttcagcttcgttggatttccagtgtttcgcaatg 309
|||||||| || ||||| || |||||||||||||| || | |||||||| || || |
Sbjct: 355 gtccactctttagctgtttctacagcttcagcttcattagccttccagtgctttgccaca 296
Query: 310 ttgtctgagagaggatcatctgggtttggggcgctcagaagtgcctgaatgctcagtaga 369
||||| | || || ||||| |||||||| || || || | |||||| ||||||| || |
Sbjct: 295 ttgtcggcaagtgggtcatcagggtttggagcactaagcaatgcctggatgctcaataaa 236
Query: 370 actgtacgtatctgaagagctggactccatttgtccttaagaatgtcgaggcatatccta 429
||||| || |||||||| || |||||||| |||||||| | ||| || ||||||||||||
Sbjct: 235 actgttcgaatctgaagggcaggactccacttgtccttcaaaatatcaaggcatatccta 176
Query: 430 ccaagcttgtcaatattaggatggtaaatttttgtgagaaatctaacttttggggcagcc 489
|||||||||||||| ||||| || ||||||||||||||||| | ||| ||||| | ||||
Sbjct: 175 ccaagcttgtcaatgttagggtgataaatttttgtgagaaaacgaacctttggtggagcc 116
Query: 490 attggatattcctcaggcaagaatagttcaagcttgaaaactccaccttcatagggtgac 549
||||||||||| ||||||||||||| || |||||||||||||| || || || || |||
Sbjct: 115 attggatattcttcaggcaagaataactcgagcttgaaaactcctccctcgtatggcgac 56
Query: 550 tgcgcggggccaaggatcatgacattgaagtaccgcatattctcctc 596
|||| || ||||||||||||||||||||||| ||||| ||||||||
Sbjct: 55 tgcgatggtccaaggatcatgacattgaagtagcgcatgttctcctc 9
>gb|CF761219.1|CF761219 DSAF1_72_E10.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_72_E10_A011 5', mRNA sequence
Length = 422
Score = 228 bits (115), Expect = 6e-058
Identities = 226/263 (85%)
Strand = Plus / Minus
Query: 241 tacaggcgagtccactccttcgctgtctcaacagcttcagcttcgttggatttccagtgt 300
|||||||||||||||||||| ||||| ||||||||||| | || |||| |||||||||
Sbjct: 278 tacaggcgagtccactccttggctgtttcaacagcttctacctcattggctttccagtgc 219
Query: 301 ttcgcaatgttgtctgagagaggatcatctgggtttggggcgctcagaagtgcctgaatg 360
|| |||||||| || || ||||| |||||||| ||||| || ||||| || ||||| ||
Sbjct: 218 tttgcaatgttatcggaaagagggtcatctggatttggcgcactcaggagagcctgtata 159
Query: 361 ctcagtagaactgtacgtatctgaagagctggactccatttgtccttaagaatgtcgagg 420
|||| ||||| || || |||||||| || || |||||||||||||| ||||||||||||
Sbjct: 158 ctcaaaagaaccgtgcgaatctgaagtgccgggctccatttgtccttgagaatgtcgagg 99
Query: 421 catatcctaccaagcttgtcaatattaggatggtaaatttttgtgagaaatctaactttt 480
||||||||||||||||||||||| || ||||| ||||| || || ||||| ||||| |||
Sbjct: 98 catatcctaccaagcttgtcaatgttgggatgataaatcttggtcagaaacctaaccttt 39
Query: 481 ggggcagccattggatattcctc 503
|||||||||||||||||||||||
Sbjct: 38 ggggcagccattggatattcctc 16
>gb|CF770011.1|CF770011 DSBF1_5_D10.b1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_5_D10_A010 5', mRNA sequence
Length = 534
Score = 228 bits (115), Expect = 6e-058
Identities = 226/263 (85%)
Strand = Plus / Minus
Query: 241 tacaggcgagtccactccttcgctgtctcaacagcttcagcttcgttggatttccagtgt 300
|||||||||||||||||||| ||||| ||||||||||| | || |||| |||||||||
Sbjct: 278 tacaggcgagtccactccttggctgtttcaacagcttctacctcattggctttccagtgc 219
Query: 301 ttcgcaatgttgtctgagagaggatcatctgggtttggggcgctcagaagtgcctgaatg 360
|| |||||||| || || ||||| |||||||| ||||| || ||||| || ||||| ||
Sbjct: 218 tttgcaatgttatcggaaagagggtcatctggatttggcgcactcaggagagcctgtata 159
Query: 361 ctcagtagaactgtacgtatctgaagagctggactccatttgtccttaagaatgtcgagg 420
|||| ||||| || || |||||||| || || |||||||||||||| ||||||||||||
Sbjct: 158 ctcaaaagaaccgtgcgaatctgaagtgccgggctccatttgtccttgagaatgtcgagg 99
Query: 421 catatcctaccaagcttgtcaatattaggatggtaaatttttgtgagaaatctaactttt 480
||||||||||||||||||||||| || ||||| ||||| || || ||||| ||||| |||
Sbjct: 98 catatcctaccaagcttgtcaatgttgggatgataaatcttggtcagaaacctaaccttt 39
Query: 481 ggggcagccattggatattcctc 503
|||||||||||||||||||||||
Sbjct: 38 ggggcagccattggatattcctc 16
>gb|CF770095.1|CF770095 DSBF1_5_D10.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_5_D10_A010 3', mRNA sequence
Length = 526
Score = 228 bits (115), Expect = 6e-058
Identities = 226/263 (85%)
Strand = Plus / Minus
Query: 241 tacaggcgagtccactccttcgctgtctcaacagcttcagcttcgttggatttccagtgt 300
|||||||||||||||||||| ||||| ||||||||||| | || |||| |||||||||
Sbjct: 278 tacaggcgagtccactccttggctgtttcaacagcttctacctcattggctttccagtgc 219
Query: 301 ttcgcaatgttgtctgagagaggatcatctgggtttggggcgctcagaagtgcctgaatg 360
|| |||||||| || || ||||| |||||||| ||||| || ||||| || ||||| ||
Sbjct: 218 tttgcaatgttatcggaaagagggtcatctggatttggcgcactcaggagagcctgtata 159
Query: 361 ctcagtagaactgtacgtatctgaagagctggactccatttgtccttaagaatgtcgagg 420
|||| ||||| || || |||||||| || || |||||||||||||| ||||||||||||
Sbjct: 158 ctcaaaagaaccgtgcgaatctgaagtgccgggctccatttgtccttgagaatgtcgagg 99
Query: 421 catatcctaccaagcttgtcaatattaggatggtaaatttttgtgagaaatctaactttt 480
||||||||||||||||||||||| || ||||| ||||| || || ||||| ||||| |||
Sbjct: 98 catatcctaccaagcttgtcaatgttgggatgataaatcttggtcagaaacctaaccttt 39
Query: 481 ggggcagccattggatattcctc 503
|||||||||||||||||||||||
Sbjct: 38 ggggcagccattggatattcctc 16
>gb|BG559023.1|BG559023 RHIZ2_53_F03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 515
Score = 226 bits (114), Expect = 2e-057
Identities = 225/262 (85%)
Strand = Plus / Minus
Query: 241 tacaggcgagtccactccttcgctgtctcaacagcttcagcttcgttggatttccagtgt 300
|||||||||||||||||||| ||||| ||||||||||| | || |||| |||||||||
Sbjct: 262 tacaggcgagtccactccttggctgtttcaacagcttctacctcattggctttccagtgc 203
Query: 301 ttcgcaatgttgtctgagagaggatcatctgggtttggggcgctcagaagtgcctgaatg 360
|| |||||||| || || ||||| |||||||| ||||| || ||||| || ||||| ||
Sbjct: 202 tttgcaatgttatcggaaagagggtcatctggatttggcgcactcaggagagcctgtata 143
Query: 361 ctcagtagaactgtacgtatctgaagagctggactccatttgtccttaagaatgtcgagg 420
|||| ||||| || || |||||||| || || |||||||||||||| ||||||||||||
Sbjct: 142 ctcaaaagaaccgttcgaatctgaagtgccgggctccatttgtccttgagaatgtcgagg 83
Query: 421 catatcctaccaagcttgtcaatattaggatggtaaatttttgtgagaaatctaactttt 480
||||||||||||||||||||||| || ||||| ||||| || || ||||| ||||| |||
Sbjct: 82 catatcctaccaagcttgtcaatgttgggatgataaatcttggtcagaaacctaaccttt 23
Query: 481 ggggcagccattggatattcct 502
||||||||||||||||||||||
Sbjct: 22 ggggcagccattggatattcct 1
>gb|BE365066.1|BE365066 PI1_24_D07.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 546
Score = 210 bits (106), Expect = 1e-052
Identities = 214/250 (85%)
Strand = Plus / Minus
Query: 435 cttgtcaatattaggatggtaaatttttgtgagaaatctaacttttggggcagccattgg 494
||||||||| ||||| || ||||||||||||||||| | ||| ||||| | |||||||||
Sbjct: 258 cttgtcaatgttagggtgataaatttttgtgagaaaacgaacctttggtggagccattgg 199
Query: 495 atattcctcaggcaagaatagttcaagcttgaaaactccaccttcatagggtgactgcgc 554
|||||| ||||||||||||| || |||||||||||||| || || || || |||||||
Sbjct: 198 atattcttcaggcaagaataactcgagcttgaaaactcctccctcgtatggcgactgcga 139
Query: 555 ggggccaaggatcatgacattgaagtaccgcatattctcctccgacggcgacgcgctaat 614
|| ||||||||||||||||||||||| ||||| |||||||| || ||||| || || ||
Sbjct: 138 tggtccaaggatcatgacattgaagtagcgcatgttctcctctgatggcgaggcactgat 79
Query: 615 ccccggtgctggttcgctgagaagccgctgcgtctccttgatgattcggcgcgggagatt 674
|| || ||||| |||||||| | ||||||||||||||||||||| ||||| ||||| ||
Sbjct: 78 tcctggagctggctcgctgagcaaccgctgcgtctccttgatgatgcggcgggggaggtt 19
Query: 675 gctgttggcc 684
||||||||||
Sbjct: 18 gctgttggcc 9
Score = 63.9 bits (32), Expect = 2e-008
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 369 aactgtacgtatctgaagagctggactccatttgtccttaagaatgtcgaggcatatcct 428
|||||| || |||||||| || |||||||| |||||||| | ||| || |||||||||||
Sbjct: 394 aactgttcgaatctgaagggcaggactccacttgtccttcaaaatatcaaggcatatcct 335
Query: 429 accaagct 436
||||||||
Sbjct: 334 accaagct 327
>gb|BE365067.1|BE365067 PI1_24_D06.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 576
Score = 210 bits (106), Expect = 1e-052
Identities = 214/250 (85%)
Strand = Plus / Minus
Query: 435 cttgtcaatattaggatggtaaatttttgtgagaaatctaacttttggggcagccattgg 494
||||||||| ||||| || ||||||||||||||||| | ||| ||||| | |||||||||
Sbjct: 258 cttgtcaatgttagggtgataaatttttgtgagaaaacgaacctttggtggagccattgg 199
Query: 495 atattcctcaggcaagaatagttcaagcttgaaaactccaccttcatagggtgactgcgc 554
|||||| ||||||||||||| || |||||||||||||| || || || || |||||||
Sbjct: 198 atattcttcaggcaagaataactcgagcttgaaaactcctccctcgtatggcgactgcga 139
Query: 555 ggggccaaggatcatgacattgaagtaccgcatattctcctccgacggcgacgcgctaat 614
|| ||||||||||||||||||||||| ||||| |||||||| || ||||| || || ||
Sbjct: 138 tggtccaaggatcatgacattgaagtagcgcatgttctcctctgatggcgaggcactgat 79
Query: 615 ccccggtgctggttcgctgagaagccgctgcgtctccttgatgattcggcgcgggagatt 674
|| || ||||| |||||||| | ||||||||||||||||||||| ||||| ||||| ||
Sbjct: 78 tcctggagctggctcgctgagcaaccgctgcgtctccttgatgatgcggcgggggaggtt 19
Query: 675 gctgttggcc 684
||||||||||
Sbjct: 18 gctgttggcc 9
Score = 63.9 bits (32), Expect = 2e-008
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 369 aactgtacgtatctgaagagctggactccatttgtccttaagaatgtcgaggcatatcct 428
|||||| || |||||||| || |||||||| |||||||| | ||| || |||||||||||
Sbjct: 394 aactgttcgaatctgaagggcaggactccacttgtccttcaaaatatcaaggcatatcct 335
Query: 429 accaagct 436
||||||||
Sbjct: 334 accaagct 327
>gb|BE365076.1|BE365076 PI1_24_F07.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 559
Score = 210 bits (106), Expect = 1e-052
Identities = 214/250 (85%)
Strand = Plus / Minus
Query: 435 cttgtcaatattaggatggtaaatttttgtgagaaatctaacttttggggcagccattgg 494
||||||||| ||||| || ||||||||||||||||| | ||| ||||| | |||||||||
Sbjct: 258 cttgtcaatgttagggtgataaatttttgtgagaaaacgaacctttggtggagccattgg 199
Query: 495 atattcctcaggcaagaatagttcaagcttgaaaactccaccttcatagggtgactgcgc 554
|||||| ||||||||||||| || |||||||||||||| || || || || |||||||
Sbjct: 198 atattcttcaggcaagaataactcgagcttgaaaactcctccctcgtatggcgactgcga 139
Query: 555 ggggccaaggatcatgacattgaagtaccgcatattctcctccgacggcgacgcgctaat 614
|| ||||||||||||||||||||||| ||||| |||||||| || ||||| || || ||
Sbjct: 138 tggtccaaggatcatgacattgaagtagcgcatgttctcctctgatggcgaggcactgat 79
Query: 615 ccccggtgctggttcgctgagaagccgctgcgtctccttgatgattcggcgcgggagatt 674
|| || ||||| |||||||| | ||||||||||||||||||||| ||||| ||||| ||
Sbjct: 78 tcctggagctggctcgctgagcaaccgctgcgtctccttgatgatgcggcgggggaggtt 19
Query: 675 gctgttggcc 684
||||||||||
Sbjct: 18 gctgttggcc 9
Score = 63.9 bits (32), Expect = 2e-008
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 369 aactgtacgtatctgaagagctggactccatttgtccttaagaatgtcgaggcatatcct 428
|||||| || |||||||| || |||||||| |||||||| | ||| || |||||||||||
Sbjct: 394 aactgttcgaatctgaagggcaggactccacttgtccttcaaaatatcaaggcatatcct 335
Query: 429 accaagct 436
||||||||
Sbjct: 334 accaagct 327
>gb|BE365077.1|BE365077 PI1_24_F06.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 628
Score = 210 bits (106), Expect = 1e-052
Identities = 214/250 (85%)
Strand = Plus / Minus
Query: 435 cttgtcaatattaggatggtaaatttttgtgagaaatctaacttttggggcagccattgg 494
||||||||| ||||| || ||||||||||||||||| | ||| ||||| | |||||||||
Sbjct: 258 cttgtcaatgttagggtgataaatttttgtgagaaaacgaacctttggtggagccattgg 199
Query: 495 atattcctcaggcaagaatagttcaagcttgaaaactccaccttcatagggtgactgcgc 554
|||||| ||||||||||||| || |||||||||||||| || || || || |||||||
Sbjct: 198 atattcttcaggcaagaataactcgagcttgaaaactcctccctcgtatggcgactgcga 139
Query: 555 ggggccaaggatcatgacattgaagtaccgcatattctcctccgacggcgacgcgctaat 614
|| ||||||||||||||||||||||| ||||| |||||||| || ||||| || || ||
Sbjct: 138 tggtccaaggatcatgacattgaagtagcgcatgttctcctctgatggcgaggcactgat 79
Query: 615 ccccggtgctggttcgctgagaagccgctgcgtctccttgatgattcggcgcgggagatt 674
|| || ||||| |||||||| | ||||||||||||||||||||| ||||| ||||| ||
Sbjct: 78 tcctggagctggctcgctgagcaaccgctgcgtctccttgatgatgcggcgggggaggtt 19
Query: 675 gctgttggcc 684
||||||||||
Sbjct: 18 gctgttggcc 9
Score = 63.9 bits (32), Expect = 2e-008
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 369 aactgtacgtatctgaagagctggactccatttgtccttaagaatgtcgaggcatatcct 428
|||||| || |||||||| || |||||||| |||||||| | ||| || |||||||||||
Sbjct: 394 aactgttcgaatctgaagggcaggactccacttgtccttcaaaatatcaaggcatatcct 335
Query: 429 accaagct 436
||||||||
Sbjct: 334 accaagct 327
>gb|BE365080.1|BE365080 PI1_24_E07.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 624
Score = 210 bits (106), Expect = 1e-052
Identities = 214/250 (85%)
Strand = Plus / Minus
Query: 435 cttgtcaatattaggatggtaaatttttgtgagaaatctaacttttggggcagccattgg 494
||||||||| ||||| || ||||||||||||||||| | ||| ||||| | |||||||||
Sbjct: 258 cttgtcaatgttagggtgataaatttttgtgagaaaacgaacctttggtggagccattgg 199
Query: 495 atattcctcaggcaagaatagttcaagcttgaaaactccaccttcatagggtgactgcgc 554
|||||| ||||||||||||| || |||||||||||||| || || || || |||||||
Sbjct: 198 atattcttcaggcaagaataactcgagcttgaaaactcctccctcgtatggcgactgcga 139
Query: 555 ggggccaaggatcatgacattgaagtaccgcatattctcctccgacggcgacgcgctaat 614
|| ||||||||||||||||||||||| ||||| |||||||| || ||||| || || ||
Sbjct: 138 tggtccaaggatcatgacattgaagtagcgcatgttctcctctgatggcgaggcactgat 79
Query: 615 ccccggtgctggttcgctgagaagccgctgcgtctccttgatgattcggcgcgggagatt 674
|| || ||||| |||||||| | ||||||||||||||||||||| ||||| ||||| ||
Sbjct: 78 tcctggagctggctcgctgagcaaccgctgcgtctccttgatgatgcggcgggggaggtt 19
Query: 675 gctgttggcc 684
||||||||||
Sbjct: 18 gctgttggcc 9
Score = 63.9 bits (32), Expect = 2e-008
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 369 aactgtacgtatctgaagagctggactccatttgtccttaagaatgtcgaggcatatcct 428
|||||| || |||||||| || |||||||| |||||||| | ||| || |||||||||||
Sbjct: 394 aactgttcgaatctgaagggcaggactccacttgtccttcaaaatatcaaggcatatcct 335
Query: 429 accaagct 436
||||||||
Sbjct: 334 accaagct 327
>gb|BE365081.1|BE365081 PI1_24_E06.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 547
Score = 210 bits (106), Expect = 1e-052
Identities = 214/250 (85%)
Strand = Plus / Minus
Query: 435 cttgtcaatattaggatggtaaatttttgtgagaaatctaacttttggggcagccattgg 494
||||||||| ||||| || ||||||||||||||||| | ||| ||||| | |||||||||
Sbjct: 258 cttgtcaatgttagggtgataaatttttgtgagaaaacgaacctttggtggagccattgg 199
Query: 495 atattcctcaggcaagaatagttcaagcttgaaaactccaccttcatagggtgactgcgc 554
|||||| ||||||||||||| || |||||||||||||| || || || || |||||||
Sbjct: 198 atattcttcaggcaagaataactcgagcttgaaaactcctccctcgtatggcgactgcga 139
Query: 555 ggggccaaggatcatgacattgaagtaccgcatattctcctccgacggcgacgcgctaat 614
|| ||||||||||||||||||||||| ||||| |||||||| || ||||| || || ||
Sbjct: 138 tggtccaaggatcatgacattgaagtagcgcatgttctcctctgatggcgaggcactgat 79
Query: 615 ccccggtgctggttcgctgagaagccgctgcgtctccttgatgattcggcgcgggagatt 674
|| || ||||| |||||||| | ||||||||||||||||||||| ||||| ||||| ||
Sbjct: 78 tcctggagctggctcgctgagcaaccgctgcgtctccttgatgatgcggcgggggaggtt 19
Query: 675 gctgttggcc 684
||||||||||
Sbjct: 18 gctgttggcc 9
Score = 63.9 bits (32), Expect = 2e-008
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 369 aactgtacgtatctgaagagctggactccatttgtccttaagaatgtcgaggcatatcct 428
|||||| || |||||||| || |||||||| |||||||| | ||| || |||||||||||
Sbjct: 394 aactgttcgaatctgaagggcaggactccacttgtccttcaaaatatcaaggcatatcct 335
Query: 429 accaagct 436
||||||||
Sbjct: 334 accaagct 327
>gb|BE365095.1|BE365095 PI1_24_C06.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 355
Score = 210 bits (106), Expect = 1e-052
Identities = 214/250 (85%)
Strand = Plus / Minus
Query: 435 cttgtcaatattaggatggtaaatttttgtgagaaatctaacttttggggcagccattgg 494
||||||||| ||||| || ||||||||||||||||| | ||| ||||| | |||||||||
Sbjct: 258 cttgtcaatgttagggtgataaatttttgtgagaaaacgaacctttggtggagccattgg 199
Query: 495 atattcctcaggcaagaatagttcaagcttgaaaactccaccttcatagggtgactgcgc 554
|||||| ||||||||||||| || |||||||||||||| || || || || |||||||
Sbjct: 198 atattcttcaggcaagaataactcgagcttgaaaactcctccctcgtatggcgactgcga 139
Query: 555 ggggccaaggatcatgacattgaagtaccgcatattctcctccgacggcgacgcgctaat 614
|| ||||||||||||||||||||||| ||||| |||||||| || ||||| || || ||
Sbjct: 138 tggtccaaggatcatgacattgaagtagcgcatgttctcctctgatggcgaggcactgat 79
Query: 615 ccccggtgctggttcgctgagaagccgctgcgtctccttgatgattcggcgcgggagatt 674
|| || ||||| |||||||| | ||||||||||||||||||||| ||||| ||||| ||
Sbjct: 78 tcctggagctggctcgctgagcaaccgctgcgtctccttgatgatgcggcgggggaggtt 19
Query: 675 gctgttggcc 684
||||||||||
Sbjct: 18 gctgttggcc 9
>gb|AW745172.1|AW745172 LG1_386_G05.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 506
Score = 208 bits (105), Expect = 5e-052
Identities = 216/253 (85%)
Strand = Plus / Minus
Query: 241 tacaggcgagtccactccttcgctgtctcaacagcttcagcttcgttggatttccagtgt 300
|||||||||||||||||||| ||||| ||||||||||| | || |||| |||||||||
Sbjct: 253 tacaggcgagtccactccttggctgtttcaacagcttctacctcattggctttccagtgc 194
Query: 301 ttcgcaatgttgtctgagagaggatcatctgggtttggggcgctcagaagtgcctgaatg 360
|| |||||||| || || ||||| |||||||| ||||| || ||||| || ||||| ||
Sbjct: 193 tttgcaatgttatcggaaagagggtcatctggatttggcgcactcaggagagcctgtata 134
Query: 361 ctcagtagaactgtacgtatctgaagagctggactccatttgtccttaagaatgtcgagg 420
|||| ||||| || || |||||||| || || |||||||||||||| ||||||||||||
Sbjct: 133 ctcaaaagaaccgtgcgaatctgaagtgccgggctccatttgtccttgagaatgtcgagg 74
Query: 421 catatcctaccaagcttgtcaatattaggatggtaaatttttgtgagaaatctaactttt 480
||||||||||||||||||||||| || ||||| ||||| || || ||||| ||||| |||
Sbjct: 73 catatcctaccaagcttgtcaatgttgggatgataaatcttggtcagaaacctaaccttt 14
Query: 481 ggggcagccattg 493
|||||||||||||
Sbjct: 13 ggggcagccattg 1
>gb|BG465889.1|BG465889 RHIZ2_45_H03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 504
Score = 204 bits (103), Expect = 8e-051
Identities = 214/251 (85%)
Strand = Plus / Minus
Query: 241 tacaggcgagtccactccttcgctgtctcaacagcttcagcttcgttggatttccagtgt 300
|||||||||||||||||||| ||||| ||||||||||| | || |||| |||||||||
Sbjct: 251 tacaggcgagtccactccttggctgtttcaacagcttctacctcattggctttccagtgc 192
Query: 301 ttcgcaatgttgtctgagagaggatcatctgggtttggggcgctcagaagtgcctgaatg 360
|| |||||||| || || ||||| |||||||| ||||| || ||||| || ||||| ||
Sbjct: 191 tttgcaatgttatcggaaagagggtcatctggatttggcgcactcaggagagcctgtata 132
Query: 361 ctcagtagaactgtacgtatctgaagagctggactccatttgtccttaagaatgtcgagg 420
|||| ||||| || || |||||||| || || |||||||||||||| ||||||||||||
Sbjct: 131 ctcaaaagaaccgttcgaatctgaagtgccgggctccatttgtccttgagaatgtcgagg 72
Query: 421 catatcctaccaagcttgtcaatattaggatggtaaatttttgtgagaaatctaactttt 480
||||||||||||||||||||||| || ||||| ||||| || || ||||| ||||| |||
Sbjct: 71 catatcctaccaagcttgtcaatgttgggatgataaatcttggtcagaaacctaaccttt 12
Query: 481 ggggcagccat 491
|||||||||||
Sbjct: 11 ggggcagccat 1
>gb|CD427858.1|CD427858 ETH1_34_G01.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_34_G01_A002 5', mRNA sequence
Length = 328
Score = 190 bits (96), Expect = 1e-046
Identities = 138/152 (90%)
Strand = Plus / Minus
Query: 535 ccttcatagggtgactgcgcggggccaaggatcatgacattgaagtaccgcatattctcc 594
||||||||||| |||||||| || ||||||||||| || |||||||| ||||| ||||||
Sbjct: 324 ccttcatagggcgactgcgccggcccaaggatcataacgttgaagtagcgcatgttctcc 265
Query: 595 tccgacggcgacgcgctaatccccggtgctggttcgctgagaagccgctgcgtctccttg 654
||||| ||||||||||| |||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 264 tccgagggcgacgcgctgatccccggtgctggctcgctgagcagccgctgcgtctccttg 205
Query: 655 atgattcggcgcgggagattgctgttggccat 686
||||| || |||||||| ||||||||||||||
Sbjct: 204 atgatccgccgcgggaggttgctgttggccat 173
>gb|BG558946.1|BG558946 RHIZ2_52_F09.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 603
Score = 182 bits (92), Expect = 3e-044
Identities = 236/284 (83%)
Strand = Plus / Minus
Query: 250 gtccactccttcgctgtctcaacagcttcagcttcgttggatttccagtgtttcgcaatg 309
|||||||| || ||||| || |||||||||||||| || | |||||||| || || |
Sbjct: 295 gtccactctttagctgtttctacagcttcagcttcattagccttccagtgctttgccaca 236
Query: 310 ttgtctgagagaggatcatctgggtttggggcgctcagaagtgcctgaatgctcagtaga 369
||||| | || || ||||| |||||||| || || || | |||||| ||||||| || |
Sbjct: 235 ttgtcggcaagtgggtcatcagggtttggagcactaagcaatgcctggatgctcaataaa 176
Query: 370 actgtacgtatctgaagagctggactccatttgtccttaagaatgtcgaggcatatccta 429
||||| || |||||||| || |||||||| |||||||| | ||| || ||||||||||||
Sbjct: 175 actgttcgaatctgaagggcaggactccacttgtccttcaaaatatcaaggcatatccta 116
Query: 430 ccaagcttgtcaatattaggatggtaaatttttgtgagaaatctaacttttggggcagcc 489
|||||||||||||| ||||| || ||||||||||||||||| | ||| ||||| | ||||
Sbjct: 115 ccaagcttgtcaatgttagggtgataaatttttgtgagaaaacgaacctttggtggagcc 56
Query: 490 attggatattcctcaggcaagaatagttcaagcttgaaaactcc 533
||||||||||| ||||||||||||| || ||||||||||||||
Sbjct: 55 attggatattcttcaggcaagaataactcgagcttgaaaactcc 12
>gb|CW301925.1|CW301925 104_785_11464455_116_36265_050 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11464455, DNA
sequence
Length = 664
Score = 174 bits (88), Expect = 7e-042
Identities = 97/100 (97%)
Strand = Plus / Minus
Query: 263 ctgtctcaacagcttcagcttcgttggatttccagtgtttcgcaatgttgtctgagagag 322
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 575 ctgtctcaacagcttcagcttcattggatttccagtgtctcgcaatgttgtctgagagag 516
Query: 323 gatcatctgggtttggggcgctcagaagtgcctgaatgct 362
|||||||||| |||||||||||||||||||||||||||||
Sbjct: 515 gatcatctggatttggggcgctcagaagtgcctgaatgct 476
Score = 52.0 bits (26), Expect = 7e-005
Identities = 39/42 (92%), Gaps = 1/42 (2%)
Strand = Plus / Minus
Query: 435 cttgtcaatattaggatggtaaatttttgtgagaaatctaac 476
||||||||| || |||||||||| ||||||||||||||||||
Sbjct: 179 cttgtcaatgttgggatggtaaa-ttttgtgagaaatctaac 139
Score = 50.1 bits (25), Expect = 3e-004
Identities = 38/41 (92%), Gaps = 1/41 (2%)
Strand = Plus / Minus
Query: 361 ctcagtagaactgtacgtatctgaagagctggactccattt 401
||||| ||||||||||||||||||||| | |||||||||||
Sbjct: 314 ctcagcagaactgtacgtatctgaaga-ccggactccattt 275
>gb|BE593616.1|BE593616 WS1_98_H01.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 217
Score = 165 bits (83), Expect = 7e-039
Identities = 173/203 (85%)
Strand = Plus / Minus
Query: 394 ctccatttgtccttaagaatgtcgaggcatatcctaccaagcttgtcaatattaggatgg 453
||||| |||||||| | ||| || |||||||||||||||||||||||||| ||||| ||
Sbjct: 214 ctccacttgtccttcaaaatatcaaggcatatcctaccaagcttgtcaatgttagggtga 155
Query: 454 taaatttttgtgagaaatctaacttttggggcagccattggatattcctcaggcaagaat 513
|| |||||||||||||| | ||| ||||| | ||||||||||||||| ||||||||||||
Sbjct: 154 tagatttttgtgagaaaacgaacctttggtggagccattggatattcttcaggcaagaat 95
Query: 514 agttcaagcttgaaaactccaccttcatagggtgactgcgcggggccaaggatcatgaca 573
| || |||||||||||||| || | || || || |||| || |||||||||||||||
Sbjct: 94 aactcgagcttgaaaactcctccctggtatggcgagtgcgatggtccaaggatcatgaca 35
Query: 574 ttgaagtaccgcatattctcctc 596
|||||||| ||||| ||||||||
Sbjct: 34 ttgaagtagcgcatgttctcctc 12
>gb|BE352961.1|BE352961 DG1_1_D02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 449
Score = 159 bits (80), Expect = 4e-037
Identities = 167/196 (85%)
Strand = Plus / Minus
Query: 241 tacaggcgagtccactccttcgctgtctcaacagcttcagcttcgttggatttccagtgt 300
|||||||||||||||||||| ||||| ||||||||||| | || |||| |||||||||
Sbjct: 196 tacaggcgagtccactccttggctgtttcaacagcttctacctcattggctttccagtgc 137
Query: 301 ttcgcaatgttgtctgagagaggatcatctgggtttggggcgctcagaagtgcctgaatg 360
|| |||||||| || || ||||| |||||||| ||||| || ||||| || ||||| ||
Sbjct: 136 tttgcaatgttatcggaaagagggtcatctggatttggcgcactcaggagagcctgtata 77
Query: 361 ctcagtagaactgtacgtatctgaagagctggactccatttgtccttaagaatgtcgagg 420
|||| ||||| || || |||||||| || || |||||||||||||| ||||||||||||
Sbjct: 76 ctcaaaagaaccgtgcgaatctgaagtgccgggctccatttgtccttgagaatgtcgagg 17
Query: 421 catatcctaccaagct 436
||||||||||||||||
Sbjct: 16 catatcctaccaagct 1
>gb|CW301926.1|CW301926 104_785_11464455_148_36266_050 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11464455, DNA
sequence
Length = 759
Score = 153 bits (77), Expect = 3e-035
Identities = 128/145 (88%)
Strand = Plus / Plus
Query: 121 accccattgcaacatttcacaaatttgcgcacaccaagcaagaggggtgttcaatcgacc 180
||||||||||||| || ||| |||||| | || |||||||| ||||| |||||||| |
Sbjct: 491 accccattgcaacgttcaacagatttgctctcatcaagcaagcggggtattcaatcggct 550
Query: 181 ccaaactatggaagtgttgttacatctggaacaacacttggctgtcatgccccacttgtg 240
|||||||||||||||||| ||||||||| || ||||||||| ||||||||||||||||
Sbjct: 551 ccaaactatggaagtgttattacatctgaaataacacttggttgtcatgccccacttgca 610
Query: 241 tacaggcgagtccactccttcgctg 265
|||||||||||||||||||||||||
Sbjct: 611 tacaggcgagtccactccttcgctg 635
Score = 101 bits (51), Expect = 9e-020
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 21 aggaacggacaaagcaacacctgctttgatgttcatgggcactgcagcgaacggagctac 80
|||||| |||||||||||||||||||||||| | | ||||||||||||||| ||||||||
Sbjct: 390 aggaacagacaaagcaacacctgctttgatgcttacgggcactgcagcgaatggagctac 449
Query: 81 agccacaagta 91
|||||||||||
Sbjct: 450 agccacaagta 460
Score = 54.0 bits (27), Expect = 2e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 263 ctgtctcaacagcttcagcttcgttggattt 293
|||||||||||||||||||||| ||||||||
Sbjct: 729 ctgtctcaacagcttcagcttcattggattt 759
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 160,840
Number of Sequences: 832831
Number of extensions: 160840
Number of successful extensions: 43032
Number of sequences better than 0.5: 67
Number of HSP's better than 0.5 without gapping: 66
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 42927
Number of HSP's gapped (non-prelim): 101
length of query: 730
length of database: 491,359,669
effective HSP length: 20
effective length of query: 710
effective length of database: 474,703,049
effective search space: 337039164790
effective search space used: 337039164790
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)