BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2647492.2.1
(1179 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW339733.1|CW339733 104_840_11485424_148_36144_024 Sorgh... 860 0.0
gb|CW156724.1|CW156724 104_559_11146842_116_36378_067 Sorgh... 741 0.0
gb|CW216665.1|CW216665 104_649_11195238_116_37124_021 Sorgh... 644 0.0
gb|BG464761.1|BG464761 EM1_33_G08.g1_A002 Embryo 1 (EM1) So... 581 e-164
gb|CW216666.1|CW216666 104_649_11195238_148_37123_021 Sorgh... 565 e-159
gb|CW339732.1|CW339732 104_840_11485424_116_36145_024 Sorgh... 559 e-157
gb|CW156725.1|CW156725 104_559_11146842_148_36377_067 Sorgh... 529 e-148
gb|CL156878.1|CL156878 104_344_10783171_114_31373_115 Sorgh... 212 5e-053
gb|CL156879.1|CL156879 104_344_10783171_116_31374_115 Sorgh... 212 5e-053
gb|CW031858.1|CW031858 104_260_10501046_115_30366 Sorghum m... 212 5e-053
gb|CW161514.1|CW161514 104_568_11150454_116_36432_023 Sorgh... 212 5e-053
gb|CW412016.1|CW412016 fsbb001f107h08f0 Sorghum methylation... 212 5e-053
gb|CW412017.1|CW412017 fsbb001f107h08k0 Sorghum methylation... 212 5e-053
gb|CW471152.1|CW471152 fsbb001f224n21k0 Sorghum methylation... 202 5e-050
gb|CW452574.1|CW452574 fsbb001f193d06k0 Sorghum methylation... 143 4e-032
gb|CW421283.1|CW421283 fsbb001f130a11k0 Sorghum methylation... 66 8e-009
gb|CW121799.1|CW121799 104_499_11110107_116_34663_002 Sorgh... 62 1e-007
gb|BG357766.1|BG357766 OV2_30_A08.b1_A002 Ovary 2 (OV2) Sor... 58 2e-006
gb|CW110937.1|CW110937 104_484_11104018_148_34528_047 Sorgh... 48 0.002
gb|CW149393.1|CW149393 104_548_11142468_116_36292_042 Sorgh... 48 0.002
gb|CW149394.1|CW149394 104_548_11142468_148_36291_042 Sorgh... 48 0.002
gb|CW209460.1|CW209460 104_639_11189257_148_36990_007 Sorgh... 48 0.002
gb|AW284695.1|AW284695 LG1_214_D03.g1_A002 Light Grown 1 (L... 46 0.007
gb|CD210963.1|CD210963 HS1_58_F06.b1_A012 Heat-shocked seed... 46 0.007
gb|CW041743.1|CW041743 104_275_10506722_114_30284 Sorghum m... 42 0.11
gb|CW116094.1|CW116094 104_491_11106924_148_34595_038 Sorgh... 42 0.11
gb|BG241689.1|BG241689 RHIZ2_49_F04.b1_A003 Rhizome2 (RHIZ2... 40 0.45
gb|BG241700.1|BG241700 RHIZ2_49_G04.b1_A003 Rhizome2 (RHIZ2... 40 0.45
gb|BG465618.1|BG465618 RHIZ2_46_G02.b1_A003 Rhizome2 (RHIZ2... 40 0.45
>gb|CW339733.1|CW339733 104_840_11485424_148_36144_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485424, DNA
sequence
Length = 739
Score = 860 bits (434), Expect = 0.0
Identities = 581/630 (92%)
Strand = Plus / Minus
Query: 275 gaatttgtacagaagctcgtcccagacgtggaagtcagttctgtgcacggggacggctgc 334
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 660 gaatttgtacagaagctcgtcccggacgtggaagtcagttctgtgcacggcgacggctgc 601
Query: 335 acgtcgagagcgccaccgctgacagcctcgcacttccacggccggacaggcgcaccacca 394
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 600 acgtcgagagcgccaccgctgacagcctcgcacttccacggctggacaggcgcacctcca 541
Query: 395 gtgaacttgacgttcgacaggcagatccgggagaaggccgagttggggatgcccttgatc 454
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 540 gtgagcttgacgttcgacaggcagatccgggagaaggccgagttggcaatgcccttgatc 481
Query: 455 agcccagcctccctgacgttctggccctggacattctttaccgtaagggcgtcgacgatc 514
|||||||||||| ||| ||||||||||||||||||||||| ||| |||||||| |||||
Sbjct: 480 agcccagcctccttgatgttctggccctggacattctttatcgtcagggcgtcaacgatt 421
Query: 515 gggagcgcactccggttgtagctgtcgtcggggtgattgccgacatcgccaacgatccgc 574
|||||||| ||||||||||||| ||||||||||| ||||| |||||||| |||||||||
Sbjct: 420 gggagcgcgctccggttgtagcgctcgtcggggtggttgccaacatcgccgacgatccgc 361
Query: 575 aggccgtaccggacgttatccagcgtcacatccgagacagtgatgttcctgatgaagccg 634
|||||||| |||||||||||||| ||||| || |||||||||| ||||| |||||||||
Sbjct: 360 aggccgtagcggacgttatccagggtcacgtcggagacagtgacgttccggatgaagcct 301
Query: 635 cccctgcctgtgttggtcttgacatggatcccaaaccctgagttgaagaagttcaagtgt 694
|||||||| ||||||||||||| |||||||| ||||||||| |||||||||||| |||
Sbjct: 300 cccctgccggtgttggtcttgatgtggatcccgaaccctgagctgaagaagttcaggtgc 241
Query: 695 tctgcaaggacgttctccacgccacctgatgtctcgcttccgaccgcgaagccagcaaac 754
|||||||||||||||||||||||||||||||| |||||||| || |||||||| |||||
Sbjct: 240 tctgcaaggacgttctccacgccacctgatgtttcgcttccaacagcgaagccggcaaaa 181
Query: 755 ggggaggagcctgtgatccgccgcacggtgattccagaactggggcggccataggcgatt 814
|||||||||||||||||||| || |||||||| | || |||||||||||||| ||||||
Sbjct: 180 ggggaggagcctgtgatccggcggacggtgatgtcggagctggggcggccataagcgatt 121
Query: 815 ccatactcatcccagccactcttgatggcgatggaatcgtcaccagtcgaaatgtagcaa 874
||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||
Sbjct: 120 ccatactcatcccagccactcttgatggcaatggcatcgtcacccgtcgaaatgtagcaa 61
Query: 875 tcctcgatgcagatgttgctgctggaatct 904
||||| ||||||||||||||||||||||||
Sbjct: 60 tcctcaatgcagatgttgctgctggaatct 31
Score = 56.0 bits (28), Expect = 8e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 185 tgcccaagctttaaagcaccagtatacatactcgtagatacaga 228
||||||||||||||| ||| || ||||||||||||||||||||
Sbjct: 735 tgcccaagctttaaaacacatgtgtacatactcgtagatacaga 692
>gb|CW156724.1|CW156724 104_559_11146842_116_36378_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11146842, DNA
sequence
Length = 727
Score = 741 bits (374), Expect = 0.0
Identities = 529/578 (91%), Gaps = 2/578 (0%)
Strand = Plus / Minus
Query: 328 cggctgcacgtcgagagcgccaccgctgacagcctcgcacttccacggccggacaggcgc 387
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 727 cggctgcacgtcgagagcgccaccgctgacagcctcgcacttccacggctggacaggcgc 668
Query: 388 accaccagtgaacttgacgttcgacaggcagatccgggagaaggccgagttggggatgcc 447
||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 667 acctccagtgagcttgacgttcgacaggcagatccgggagaaggccgagttggcaatgcc 608
Query: 448 cttgatcagcccagcctccctgacgttctggccctggacatt-ctttaccgtaagggcgt 506
||||||||||||||||||| ||| |||||||||||| ||||| ||||| ||| |||||||
Sbjct: 607 cttgatcagcccagcctccttgatgttctggccctg-acatttctttatcgtcagggcgt 549
Query: 507 cgacgatcgggagcgcactccggttgtagctgtcgtcggggtgattgccgacatcgccaa 566
| ||||| |||||||| ||||||||||||| ||||||||||| ||||| |||||||| |
Sbjct: 548 caacgattgggagcgcgctccggttgtagcgctcgtcggggtggttgccaacatcgccga 489
Query: 567 cgatccgcaggccgtaccggacgttatccagcgtcacatccgagacagtgatgttcctga 626
|||||||||||||||| |||||||||||||| ||||| || |||||||||| ||||| ||
Sbjct: 488 cgatccgcaggccgtagcggacgttatccagggtcacgtcggagacagtgacgttccgga 429
Query: 627 tgaagccgcccctgcctgtgttggtcttgacatggatcccaaaccctgagttgaagaagt 686
||||||| |||||||| ||||||||||||| |||||||| ||||||||| |||||||||
Sbjct: 428 tgaagcctcccctgccggtgttggtcttgatgtggatcccgaaccctgagctgaagaagt 369
Query: 687 tcaagtgttctgcaaggacgttctccacgccacctgatgtctcgcttccgaccgcgaagc 746
||| ||| |||||||||||||||||||||||||||||||| |||||||| || |||||||
Sbjct: 368 tcaggtgctctgcaaggacgttctccacgccacctgatgtttcgcttccaacagcgaagc 309
Query: 747 cagcaaacggggaggagcctgtgatccgccgcacggtgattccagaactggggcggccat 806
| ||||| |||||||||||||||||||| || |||||||| | || |||||||||||||
Sbjct: 308 cggcaaaaggggaggagcctgtgatccggcggacggtgatgtcggagctggggcggccat 249
Query: 807 aggcgattccatactcatcccagccactcttgatggcgatggaatcgtcaccagtcgaaa 866
| ||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||
Sbjct: 248 aagcgattccatactcatcccagccactcttgatggcaatggcatcgtcacccgtcgaaa 189
Query: 867 tgtagcaatcctcgatgcagatgttgctgctggaatct 904
||||||||||||| ||||||||||||||||||||||||
Sbjct: 188 tgtagcaatcctcaatgcagatgttgctgctggaatct 151
Score = 107 bits (54), Expect = 2e-021
Identities = 57/58 (98%)
Strand = Plus / Minus
Query: 903 ctggatcaattccatccgtgttgggggagtcatgtggagctaggatagtcacgtttct 960
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 58 ctggatcaattccatccgtgttgggggagtcatgtggagctaggatagtcacatttct 1
>gb|CW216665.1|CW216665 104_649_11195238_116_37124_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195238, DNA
sequence
Length = 599
Score = 644 bits (325), Expect = 0.0
Identities = 427/461 (92%)
Strand = Plus / Plus
Query: 275 gaatttgtacagaagctcgtcccagacgtggaagtcagttctgtgcacggggacggctgc 334
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 127 gaatttgtacagaagctcgtcccggacgtggaagtcagttctgtgcacggcgacggctgc 186
Query: 335 acgtcgagagcgccaccgctgacagcctcgcacttccacggccggacaggcgcaccacca 394
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 187 acgtcgagagcgccaccgctgacagcctcgcacttccacggctggacaggcgcacctcca 246
Query: 395 gtgaacttgacgttcgacaggcagatccgggagaaggccgagttggggatgcccttgatc 454
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 247 gtgagcttgacgttcgacaggcagatccgggagaaggccgagttggcaatgcccttgatc 306
Query: 455 agcccagcctccctgacgttctggccctggacattctttaccgtaagggcgtcgacgatc 514
|||||||||||| ||| ||||||||||||||||||||||| ||| |||||||| |||||
Sbjct: 307 agcccagcctccttgatgttctggccctggacattctttatcgtcagggcgtcaacgatt 366
Query: 515 gggagcgcactccggttgtagctgtcgtcggggtgattgccgacatcgccaacgatccgc 574
|||||||| ||||||||||||| ||||||||||| ||||| |||||||| |||||||||
Sbjct: 367 gggagcgcgctccggttgtagcgctcgtcggggtggttgccaacatcgccgacgatccgc 426
Query: 575 aggccgtaccggacgttatccagcgtcacatccgagacagtgatgttcctgatgaagccg 634
|||||||| |||||||||||||| ||||| || |||||||||| ||||| |||||||||
Sbjct: 427 aggccgtagcggacgttatccagggtcacgtcggagacagtgacgttccggatgaagcct 486
Query: 635 cccctgcctgtgttggtcttgacatggatcccaaaccctgagttgaagaagttcaagtgt 694
|||||||| ||||||||||||| |||||||| ||||||||| |||||||||||| |||
Sbjct: 487 cccctgccggtgttggtcttgatgtggatcccgaaccctgagctgaagaagttcaggtgc 546
Query: 695 tctgcaaggacgttctccacgccacctgatgtctcgcttcc 735
|||||||||||||||||||||||||||||||| ||||||||
Sbjct: 547 tctgcaaggacgttctccacgccacctgatgtttcgcttcc 587
Score = 65.9 bits (33), Expect = 8e-009
Identities = 61/69 (88%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 161 ttttcgggaagataaatacttgggt-gcccaagctttaaagcaccagtatacatactcgt 219
|||| |||||||||||| |||||| |||||||||||||| ||| || |||||||||||
Sbjct: 27 tttttgggaagataaatggttgggttgcccaagctttaaaacacatgtgtacatactcgt 86
Query: 220 agatacaga 228
|||||||||
Sbjct: 87 agatacaga 95
>gb|BG464761.1|BG464761 EM1_33_G08.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 467
Score = 581 bits (293), Expect = e-164
Identities = 424/464 (91%), Gaps = 3/464 (0%)
Strand = Plus / Minus
Query: 310 cagttctgtgcacggggacggctgcacgtcgagagcgccaccgctgacagcctcgcactt 369
||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 461 cagttctgtgcacggcgacggctgcncgtcgagagcgccaccgctgacagcct-gcactt 403
Query: 370 ccacggccggacaggcgcaccaccagtgaacttgacgttcgacaggcagatccgggagaa 429
| ||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 402 c-acggctggacaggcgcacctccagtgagcttgacgttcgacaggcagatccgggagaa 344
Query: 430 ggccgagttggggatgcccttgatcagcccagcctccctgacgttctggccctggacatt 489
||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 343 ggccgagttggcaatgcccttgatcagcccagcctccttgatgttctggccctggacatt 284
Query: 490 ctttaccgtaagggcgtcgacgatcgggagcgcactccggttgtagctgtcgtcggggtg 549
||||| ||| |||||||| ||||| |||||||| ||||||||||||| |||||||||||
Sbjct: 283 ctttatcgtcagggcgtcaacgattgggagcgcgctccggttgtagcgctcgtcggggtg 224
Query: 550 attgccgacatcgccaacgatccgcaggccgtaccggacgttatccagcgtcacatccga 609
||||| |||||||| ||||||||||||||||| |||||||||||||| ||||| || ||
Sbjct: 223 gttgccaacatcgccgacgatccgcaggccgtagcggacgttatccagggtcacgtcgga 164
Query: 610 gacagtgatgttcctgatgaagccgcccctgcctgtgttggtcttgacatggatcccaaa 669
|||||||| ||||| ||||||||| |||||||| ||||||||||||| |||||||| ||
Sbjct: 163 gacagtgacgttccggatgaagcctcccctgccggtgttggtcttgatgtggatcccgaa 104
Query: 670 ccctgagttgaagaagttcaagtgttctgcaaggacgttctccacgccacctgatgtctc 729
||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||| ||
Sbjct: 103 ccctgagctgaagaagttcaggtgctctgcaaggacgttctccacgccacctgatgtttc 44
Query: 730 gcttccgaccgcgaagccagcaaacggggaggagcctgtgatcc 773
|||||| || |||||||| ||||| |||||||||||||||||||
Sbjct: 43 gcttcc-acagcgaagccggcaaaaggggaggagcctgtgatcc 1
>gb|CW216666.1|CW216666 104_649_11195238_148_37123_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195238, DNA
sequence
Length = 652
Score = 565 bits (285), Expect = e-159
Identities = 411/453 (90%)
Strand = Plus / Minus
Query: 452 atcagcccagcctccctgacgttctggccctggacattctttaccgtaagggcgtcgacg 511
||||||||||||||| ||| ||||||||||||||||||||||| ||| |||||||| |||
Sbjct: 652 atcagcccagcctccttgatgttctggccctggacattctttatcgtcagggcgtcaacg 593
Query: 512 atcgggagcgcactccggttgtagctgtcgtcggggtgattgccgacatcgccaacgatc 571
|| |||||||| ||||||||||||| ||||||||||| ||||| |||||||| ||||||
Sbjct: 592 attgggagcgcgctccggttgtagcgctcgtcggggtggttgccaacatcgccgacgatc 533
Query: 572 cgcaggccgtaccggacgttatccagcgtcacatccgagacagtgatgttcctgatgaag 631
||||||||||| |||||||||||||| ||||| || |||||||||| ||||| |||||||
Sbjct: 532 cgcaggccgtagcggacgttatccagggtcacgtcggagacagtgacgttccggatgaag 473
Query: 632 ccgcccctgcctgtgttggtcttgacatggatcccaaaccctgagttgaagaagttcaag 691
|| |||||||| ||||||||||||| |||||||| ||||||||| |||||||||||| |
Sbjct: 472 cctcccctgccggtgttggtcttgatgtggatcccgaaccctgagctgaagaagttcagg 413
Query: 692 tgttctgcaaggacgttctccacgccacctgatgtctcgcttccgaccgcgaagccagca 751
|| |||||||||||||||||||||||||||||||| |||||||| || |||||||| |||
Sbjct: 412 tgctctgcaaggacgttctccacgccacctgatgtttcgcttccaacagcgaagccggca 353
Query: 752 aacggggaggagcctgtgatccgccgcacggtgattccagaactggggcggccataggcg 811
|| |||||||||||||||||||| || |||||||| | || |||||||||||||| |||
Sbjct: 352 aaaggggaggagcctgtgatccggcggacggtgatgtcggagctggggcggccataagcg 293
Query: 812 attccatactcatcccagccactcttgatggcgatggaatcgtcaccagtcgaaatgtag 871
|||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||
Sbjct: 292 attccatactcatcccagccactcttgatggcaatggcatcgtcacccgtcgaaatgtag 233
Query: 872 caatcctcgatgcagatgttgctgctggaatct 904
|||||||| ||||||||||||||||||||||||
Sbjct: 232 caatcctcaatgcagatgttgctgctggaatct 200
Score = 143 bits (72), Expect = 4e-032
Identities = 75/76 (98%)
Strand = Plus / Minus
Query: 903 ctggatcaattccatccgtgttgggggagtcatgtggagctaggatagtcacgtttctga 962
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 107 ctggatcaattccatccgtgttgggggagtcatgtggagctaggatagtcacatttctga 48
Query: 963 tcacaacattgctgca 978
||||||||||||||||
Sbjct: 47 tcacaacattgctgca 32
>gb|CW339732.1|CW339732 104_840_11485424_116_36145_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485424, DNA
sequence
Length = 651
Score = 559 bits (282), Expect = e-157
Identities = 372/402 (92%)
Strand = Plus / Plus
Query: 275 gaatttgtacagaagctcgtcccagacgtggaagtcagttctgtgcacggggacggctgc 334
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 246 gaatttgtacagaagctcgtcccggacgtggaagtcagttctgtgcacggcgacggctgc 305
Query: 335 acgtcgagagcgccaccgctgacagcctcgcacttccacggccggacaggcgcaccacca 394
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 306 acgtcgagagcgccaccgctgacagcctcgcacttccacggctggacaggcgcacctcca 365
Query: 395 gtgaacttgacgttcgacaggcagatccgggagaaggccgagttggggatgcccttgatc 454
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 366 gtgagcttgacgttcgacaggcagatccgggagaaggccgagttggcaatgcccttgatc 425
Query: 455 agcccagcctccctgacgttctggccctggacattctttaccgtaagggcgtcgacgatc 514
|||||||||||| ||| ||||||||||||||||||||||| ||| |||||||| |||||
Sbjct: 426 agcccagcctccttgatgttctggccctggacattctttatcgtcagggcgtcaacgatt 485
Query: 515 gggagcgcactccggttgtagctgtcgtcggggtgattgccgacatcgccaacgatccgc 574
|||||||| ||||||||||||| ||||||||||| ||||| |||||||| |||||||||
Sbjct: 486 gggagcgcgctccggttgtagcgctcgtcggggtggttgccaacatcgccgacgatccgc 545
Query: 575 aggccgtaccggacgttatccagcgtcacatccgagacagtgatgttcctgatgaagccg 634
|||||||| |||||||||||||| ||||| || |||||||||| ||||| |||||||||
Sbjct: 546 aggccgtagcggacgttatccagggtcacgtcggagacagtgacgttccggatgaagcct 605
Query: 635 cccctgcctgtgttggtcttgacatggatcccaaaccctgag 676
|||||||| ||||||||||||| |||||||| |||||||||
Sbjct: 606 cccctgccggtgttggtcttgatgtggatcccgaaccctgag 647
Score = 71.9 bits (36), Expect = 1e-010
Identities = 107/127 (84%), Gaps = 4/127 (3%)
Strand = Plus / Plus
Query: 106 tcaagaattattctcttcgtataga--ggttcaaataaattacggaaaccaaattaattt 163
||||||| |||||||||||||||| ||||||| | ||||| |||| || |||||||
Sbjct: 88 tcaagaaccattctcttcgtatagaaaggttcaatttaattagtgaaatcatcttaattt 147
Query: 164 tc-gggaagataaatacttgggt-gcccaagctttaaagcaccagtatacatactcgtag 221
| |||||||||||| |||||| |||||||||||||| ||| || |||||||||||||
Sbjct: 148 tttgggaagataaatggttgggttgcccaagctttaaaacacatgtgtacatactcgtag 207
Query: 222 atacaga 228
|||||||
Sbjct: 208 atacaga 214
>gb|CW156725.1|CW156725 104_559_11146842_148_36377_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11146842, DNA
sequence
Length = 399
Score = 529 bits (267), Expect = e-148
Identities = 366/399 (91%)
Strand = Plus / Plus
Query: 306 aagtcagttctgtgcacggggacggctgcacgtcgagagcgccaccgctgacagcctcgc 365
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagtcagttctgtgcacggcgacggctgcacgtcgagagcgccaccgctgacagcctcgc 60
Query: 366 acttccacggccggacaggcgcaccaccagtgaacttgacgttcgacaggcagatccggg 425
||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 61 acttccacggctggacaggcgcacctccagtgagcttgacgttcgacaggcagatccggg 120
Query: 426 agaaggccgagttggggatgcccttgatcagcccagcctccctgacgttctggccctgga 485
||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 121 agaaggccgagttggcaatgcccttgatcagcccagcctccttgatgttctggccctgga 180
Query: 486 cattctttaccgtaagggcgtcgacgatcgggagcgcactccggttgtagctgtcgtcgg 545
||||||||| ||| |||||||| ||||| |||||||| ||||||||||||| |||||||
Sbjct: 181 cattctttatcgtcagggcgtcaacgattgggagcgcgctccggttgtagcgctcgtcgg 240
Query: 546 ggtgattgccgacatcgccaacgatccgcaggccgtaccggacgttatccagcgtcacat 605
|||| ||||| |||||||| ||||||||||||||||| |||||||||||||| ||||| |
Sbjct: 241 ggtggttgccaacatcgccgacgatccgcaggccgtagcggacgttatccagggtcacgt 300
Query: 606 ccgagacagtgatgttcctgatgaagccgcccctgcctgtgttggtcttgacatggatcc 665
| |||||||||| ||||| ||||||||| |||||||| ||||||||||||| || ||||
Sbjct: 301 cggagacagtgacgttccggatgaagcctcccctgccggtgttggtcttgatgtgcatcc 360
Query: 666 caaaccctgagttgaagaagttcaagtgttctgcaagga 704
| ||||||||| |||||||||||| ||| ||||||||||
Sbjct: 361 cgaaccctgagctgaagaagttcaggtgctctgcaagga 399
>gb|CL156878.1|CL156878 104_344_10783171_114_31373_115 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10783171, DNA
sequence
Length = 735
Score = 212 bits (107), Expect = 5e-053
Identities = 158/178 (88%)
Strand = Plus / Minus
Query: 974 ctgcaataaacaggatggatgttccagaatggcgaatcctgaaagacgacattggagaca 1033
||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct: 559 ctgcaataaacaggatgaatgttccagaatggtgaatcctgaaagacaacattggagacg 500
Query: 1034 atgatatcagaagagctcatcagctcaagaaggtgaggccttgtgtagagcagnnnnnnn 1093
||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 atgatatgagaagagctcatcagctcaagaaggtgaggccttgtgtagagcagtgtgccc 440
Query: 1094 nncttccacatatcccaccacgcgctgccttaaccaccaatagttccattctcgcctg 1151
|||||||||||||||||| | | |||||| |||| |||||||||||||||| ||||
Sbjct: 439 ttcttccacatatcccaccatggggtgccttgaccatcaatagttccattctcacctg 382
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 1148 cctgtgatgacaacatcctgaagccc 1173
||||||||||||||||||||||||||
Sbjct: 225 cctgtgatgacaacatcctgaagccc 200
>gb|CL156879.1|CL156879 104_344_10783171_116_31374_115 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10783171, DNA
sequence
Length = 752
Score = 212 bits (107), Expect = 5e-053
Identities = 158/178 (88%)
Strand = Plus / Plus
Query: 974 ctgcaataaacaggatggatgttccagaatggcgaatcctgaaagacgacattggagaca 1033
||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct: 180 ctgcaataaacaggatgaatgttccagaatggtgaatcctgaaagacaacattggagacg 239
Query: 1034 atgatatcagaagagctcatcagctcaagaaggtgaggccttgtgtagagcagnnnnnnn 1093
||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 atgatatgagaagagctcatcagctcaagaaggtgaggccttgtgtagagcagtgtgccc 299
Query: 1094 nncttccacatatcccaccacgcgctgccttaaccaccaatagttccattctcgcctg 1151
|||||||||||||||||| | | |||||| |||| |||||||||||||||| ||||
Sbjct: 300 ttcttccacatatcccaccatggggtgccttgaccatcaatagttccattctcacctg 357
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1148 cctgtgatgacaacatcctgaagccc 1173
||||||||||||||||||||||||||
Sbjct: 514 cctgtgatgacaacatcctgaagccc 539
>gb|CW031858.1|CW031858 104_260_10501046_115_30366 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10501046, DNA
sequence
Length = 550
Score = 212 bits (107), Expect = 5e-053
Identities = 158/178 (88%)
Strand = Plus / Plus
Query: 974 ctgcaataaacaggatggatgttccagaatggcgaatcctgaaagacgacattggagaca 1033
||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct: 57 ctgcaataaacaggatgaatgttccagaatggtgaatcctgaaagacaacattggagacg 116
Query: 1034 atgatatcagaagagctcatcagctcaagaaggtgaggccttgtgtagagcagnnnnnnn 1093
||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 atgatatgagaagagctcatcagctcaagaaggtgaggccttgtgtagagcagtgtgccc 176
Query: 1094 nncttccacatatcccaccacgcgctgccttaaccaccaatagttccattctcgcctg 1151
|||||||||||||||||| | | |||||| |||| |||||||||||||||| ||||
Sbjct: 177 ttcttccacatatcccaccatggggtgccttgaccatcaatagttccattctcacctg 234
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1148 cctgtgatgacaacatcctgaagccc 1173
||||||||||||||||||||||||||
Sbjct: 391 cctgtgatgacaacatcctgaagccc 416
>gb|CW161514.1|CW161514 104_568_11150454_116_36432_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11150454, DNA
sequence
Length = 681
Score = 212 bits (107), Expect = 5e-053
Identities = 158/178 (88%)
Strand = Plus / Plus
Query: 974 ctgcaataaacaggatggatgttccagaatggcgaatcctgaaagacgacattggagaca 1033
||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct: 25 ctgcaataaacaggatgaatgttccagaatggtgaatcctgaaagacaacattggagacg 84
Query: 1034 atgatatcagaagagctcatcagctcaagaaggtgaggccttgtgtagagcagnnnnnnn 1093
||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 atgatatgagaagagctcatcagctcaagaaggtgaggccttgtgtagagcagtgtgccc 144
Query: 1094 nncttccacatatcccaccacgcgctgccttaaccaccaatagttccattctcgcctg 1151
|||||||||||||||||| | | |||||| |||| |||||||||||||||| ||||
Sbjct: 145 ttcttccacatatcccaccatggggtgccttgaccatcaatagttccattctcacctg 202
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1148 cctgtgatgacaacatcctgaagccc 1173
||||||||||||||||||||||||||
Sbjct: 359 cctgtgatgacaacatcctgaagccc 384
>gb|CW412016.1|CW412016 fsbb001f107h08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f107h08, DNA
sequence
Length = 775
Score = 212 bits (107), Expect = 5e-053
Identities = 158/178 (88%)
Strand = Plus / Minus
Query: 974 ctgcaataaacaggatggatgttccagaatggcgaatcctgaaagacgacattggagaca 1033
||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct: 628 ctgcaataaacaggatgaatgttccagaatggtgaatcctgaaagacaacattggagacg 569
Query: 1034 atgatatcagaagagctcatcagctcaagaaggtgaggccttgtgtagagcagnnnnnnn 1093
||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 atgatatgagaagagctcatcagctcaagaaggtgaggccttgtgtagagcagtgtgccc 509
Query: 1094 nncttccacatatcccaccacgcgctgccttaaccaccaatagttccattctcgcctg 1151
|||||||||||||||||| | | |||||| |||| |||||||||||||||| ||||
Sbjct: 508 ttcttccacatatcccaccatggggtgccttgaccatcaatagttccattctcacctg 451
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 1148 cctgtgatgacaacatcctgaagccc 1173
||||||||||||||||||||||||||
Sbjct: 294 cctgtgatgacaacatcctgaagccc 269
>gb|CW412017.1|CW412017 fsbb001f107h08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f107h08, DNA
sequence
Length = 718
Score = 212 bits (107), Expect = 5e-053
Identities = 158/178 (88%)
Strand = Plus / Plus
Query: 974 ctgcaataaacaggatggatgttccagaatggcgaatcctgaaagacgacattggagaca 1033
||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct: 491 ctgcaataaacaggatgaatgttccagaatggtgaatcctgaaagacaacattggagacg 550
Query: 1034 atgatatcagaagagctcatcagctcaagaaggtgaggccttgtgtagagcagnnnnnnn 1093
||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 atgatatgagaagagctcatcagctcaagaaggtgaggccttgtgtagagcagtgtgccc 610
Query: 1094 nncttccacatatcccaccacgcgctgccttaaccaccaatagttccattctcgcctg 1151
|||||||||||||||||| | | |||||| |||| |||||||||||||||| ||||
Sbjct: 611 ttcttccacatatcccaccatggggtgccttgaccatcaatagttccattctcacctg 668
>gb|CW471152.1|CW471152 fsbb001f224n21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f224n21, DNA
sequence
Length = 544
Score = 202 bits (102), Expect = 5e-050
Identities = 153/173 (88%)
Strand = Plus / Plus
Query: 979 ataaacaggatggatgttccagaatggcgaatcctgaaagacgacattggagacaatgat 1038
|||||||||||| |||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct: 21 ataaacaggatgaatgttccagaatggtgaatcctgaaagacaacattggagacgatgat 80
Query: 1039 atcagaagagctcatcagctcaagaaggtgaggccttgtgtagagcagnnnnnnnnnctt 1098
|| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 81 atgagaagagctcatcagctcaagaaggtgaggccttgtgtagagcagtgtgcccttctt 140
Query: 1099 ccacatatcccaccacgcgctgccttaaccaccaatagttccattctcgcctg 1151
||||||||||||||| | | |||||| |||| |||||||||||||||| ||||
Sbjct: 141 ccacatatcccaccatggggtgccttgaccatcaatagttccattctcacctg 193
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1148 cctgtgatgacaacatcctgaagccc 1173
||||||||||||||||||||||||||
Sbjct: 350 cctgtgatgacaacatcctgaagccc 375
>gb|CW452574.1|CW452574 fsbb001f193d06k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f193d06, DNA
sequence
Length = 328
Score = 143 bits (72), Expect = 4e-032
Identities = 75/76 (98%)
Strand = Plus / Minus
Query: 903 ctggatcaattccatccgtgttgggggagtcatgtggagctaggatagtcacgtttctga 962
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 136 ctggatcaattccatccgtgttgggggagtcatgtggagctaggatagtcacatttctga 77
Query: 963 tcacaacattgctgca 978
||||||||||||||||
Sbjct: 76 tcacaacattgctgca 61
Score = 139 bits (70), Expect = 7e-031
Identities = 88/94 (93%)
Strand = Plus / Minus
Query: 811 gattccatactcatcccagccactcttgatggcgatggaatcgtcaccagtcgaaatgta 870
||||||||||||||||||||| || |||||||| |||| ||||||||| |||||||||||
Sbjct: 322 gattccatactcatcccagccgctgttgatggcaatggcatcgtcacccgtcgaaatgta 263
Query: 871 gcaatcctcgatgcagatgttgctgctggaatct 904
||||||||| ||||||||||||||||||||||||
Sbjct: 262 gcaatcctcaatgcagatgttgctgctggaatct 229
>gb|CW421283.1|CW421283 fsbb001f130a11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f130a11, DNA
sequence
Length = 405
Score = 65.9 bits (33), Expect = 8e-009
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 1054 cagctcaagaaggtgaggccttgtgtagagcag 1086
|||||||||||||||||||||||||||||||||
Sbjct: 405 cagctcaagaaggtgaggccttgtgtagagcag 373
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 1148 cctgtgatgacaacatcctgaagccc 1173
||||||||||||||||||||||||||
Sbjct: 144 cctgtgatgacaacatcctgaagccc 119
>gb|CW121799.1|CW121799 104_499_11110107_116_34663_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11110107, DNA
sequence
Length = 131
Score = 61.9 bits (31), Expect = 1e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 707 ttctccacgccacctgatgtctcgcttccgaccgcgaagccagcaaa 753
|||||||||||||| |||||||||||||| || || |||||||||||
Sbjct: 74 ttctccacgccaccagatgtctcgcttccaactgcaaagccagcaaa 28
>gb|BG357766.1|BG357766 OV2_30_A08.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 539
Score = 58.0 bits (29), Expect = 2e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 875 tcctcgatgcagatgttgctgctggaatctggatcaattccatccgtgttgggggagtca 934
||||||||||| | |||| ||| ||||||||||| ||||| || ||||| |||||||||
Sbjct: 325 tcctcgatgcacacgttggagctagaatctggatcgattccgtctgtgtttggggagtca 266
Query: 935 tgtgg 939
|||||
Sbjct: 265 tgtgg 261
>gb|CW110937.1|CW110937 104_484_11104018_148_34528_047 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11104018, DNA
sequence
Length = 587
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1150 tgtgatgacaacatcctgaagccc 1173
||||||||||||||||||||||||
Sbjct: 382 tgtgatgacaacatcctgaagccc 359
>gb|CW149393.1|CW149393 104_548_11142468_116_36292_042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11142468, DNA
sequence
Length = 618
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1150 tgtgatgacaacatcctgaagccc 1173
||||||||||||||||||||||||
Sbjct: 513 tgtgatgacaacatcctgaagccc 490
>gb|CW149394.1|CW149394 104_548_11142468_148_36291_042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11142468, DNA
sequence
Length = 682
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1150 tgtgatgacaacatcctgaagccc 1173
||||||||||||||||||||||||
Sbjct: 568 tgtgatgacaacatcctgaagccc 591
>gb|CW209460.1|CW209460 104_639_11189257_148_36990_007 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11189257, DNA
sequence
Length = 658
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1150 tgtgatgacaacatcctgaagccc 1173
||||||||||||||||||||||||
Sbjct: 237 tgtgatgacaacatcctgaagccc 214
>gb|AW284695.1|AW284695 LG1_214_D03.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 518
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 815 ccatactcatcccagccactcttgatg 841
|||||||||||||| ||||||||||||
Sbjct: 380 ccatactcatcccacccactcttgatg 406
>gb|CD210963.1|CD210963 HS1_58_F06.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_58_F06_A012 3', mRNA sequence
Length = 694
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 815 ccatactcatcccagccactcttgatg 841
|||||||||||||| ||||||||||||
Sbjct: 103 ccatactcatcccacccactcttgatg 77
>gb|CW041743.1|CW041743 104_275_10506722_114_30284 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506722, DNA
sequence
Length = 728
Score = 42.1 bits (21), Expect = 0.11
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 903 ctggatcaattccatccgtgttgggggagtcatgtgg 939
||||||| ||||| || ||||| ||||||||||||||
Sbjct: 367 ctggatcgattccgtctgtgtttggggagtcatgtgg 331
>gb|CW116094.1|CW116094 104_491_11106924_148_34595_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11106924, DNA
sequence
Length = 544
Score = 42.1 bits (21), Expect = 0.11
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 903 ctggatcaattccatccgtgttgggggagtcatgtgg 939
||||||| ||||| || ||||| ||||||||||||||
Sbjct: 268 ctggatcgattccgtctgtgtttggggagtcatgtgg 232
>gb|BG241689.1|BG241689 RHIZ2_49_F04.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 451
Score = 40.1 bits (20), Expect = 0.45
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 815 ccatactcatcccagccact 834
||||||||||||||||||||
Sbjct: 370 ccatactcatcccagccact 351
>gb|BG241700.1|BG241700 RHIZ2_49_G04.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 417
Score = 40.1 bits (20), Expect = 0.45
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 815 ccatactcatcccagccact 834
||||||||||||||||||||
Sbjct: 370 ccatactcatcccagccact 351
>gb|BG465618.1|BG465618 RHIZ2_46_G02.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 439
Score = 40.1 bits (20), Expect = 0.45
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 815 ccatactcatcccagccact 834
||||||||||||||||||||
Sbjct: 370 ccatactcatcccagccact 351
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 268,260
Number of Sequences: 832831
Number of extensions: 268260
Number of successful extensions: 70526
Number of sequences better than 0.5: 29
Number of HSP's better than 0.5 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70465
Number of HSP's gapped (non-prelim): 55
length of query: 1179
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1159
effective length of database: 474,703,049
effective search space: 550180833791
effective search space used: 550180833791
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)