BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2647391.2.1
(1118 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW395210.1|CW395210 fsbb001f083c11f0 Sorghum methylation... 500 e-139
gb|BE360387.1|BE360387 DG1_63_F11.b1_A002 Dark Grown 1 (DG1... 500 e-139
gb|BE594226.1|BE594226 WS1_103_H02.b1_A002 Water-stressed 1... 500 e-139
gb|CN132861.1|CN132861 OX1_8_E01.g1_A002 Oxidatively-stress... 500 e-139
gb|CN139739.1|CN139739 OX1_23_G10.g1_A002 Oxidatively-stres... 492 e-137
gb|BE356065.1|BE356065 DG1_122_C07.b1_A002 Dark Grown 1 (DG... 412 e-113
gb|CW311029.1|CW311029 104_800_11470021_116_35753_057 Sorgh... 391 e-106
gb|CW370296.1|CW370296 fsbb001f045c09k0 Sorghum methylation... 375 e-102
gb|BG649436.1|BG649436 EM1_79_D06.b1_A002 Embryo 1 (EM1) So... 335 5e-090
gb|CW067692.1|CW067692 104_315_10524451_114_30124 Sorghum m... 305 5e-081
gb|CW370295.1|CW370295 fsbb001f045c09f0 Sorghum methylation... 289 3e-076
gb|CW311030.1|CW311030 104_800_11470021_148_35757_057 Sorgh... 281 7e-074
gb|BE593909.1|BE593909 WS1_103_H02.g1_A002 Water-stressed 1... 281 7e-074
gb|CW495714.1|CW495714 fsbb001f287j19f0 Sorghum methylation... 234 1e-059
gb|CW495715.1|CW495715 fsbb001f287j19k0 Sorghum methylation... 234 1e-059
gb|AW746008.1|AW746008 WS1_38_H05.g1_A002 Water-stressed 1 ... 232 6e-059
gb|BE360463.1|BE360463 DG1_63_F11.g1_A002 Dark Grown 1 (DG1... 186 3e-045
gb|CW040599.1|CW040599 104_274_10506221_114_30467 Sorghum m... 184 1e-044
gb|CW032162.1|CW032162 104_261_10501223_114_30363 Sorghum m... 109 6e-022
gb|CD463195.1|CD463195 ETH1_42_D08.g1_A002 Ethylene-treated... 109 6e-022
gb|CN134135.1|CN134135 OX1_20_B02.g1_A002 Oxidatively-stres... 109 6e-022
gb|CN135950.1|CN135950 OX1_39_H10.g1_A002 Oxidatively-stres... 109 6e-022
gb|CW252632.1|CW252632 104_715_11224618_116_35095_033 Sorgh... 103 3e-020
gb|CW226157.1|CW226157 104_664_11204738_148_37217_013 Sorgh... 101 1e-019
gb|CW298152.1|CW298152 104_780_11462428_116_35649_006 Sorgh... 101 1e-019
gb|CW366630.1|CW366630 fsbb001f039l10k0 Sorghum methylation... 101 1e-019
gb|CW248190.1|CW248190 104_709_11222168_116_35030_024 Sorgh... 100 5e-019
gb|CW248191.1|CW248191 104_709_11222168_148_35026_024 Sorgh... 100 5e-019
gb|BI643627.1|BI643627 DG1_92_B06.b1_A002 Dark Grown 1 (DG1... 100 5e-019
gb|CN138744.1|CN138744 OX1_13_D12.g1_A002 Oxidatively-stres... 100 5e-019
gb|CW095836.1|CW095836 104_461_11001557_148_34328_027 Sorgh... 94 3e-017
gb|BF421185.1|BF421185 FM1_6_E04.b1_A003 Floral-Induced Mer... 94 3e-017
gb|BF421398.1|BF421398 FM1_8_D04.b1_A003 Floral-Induced Mer... 94 3e-017
gb|CL171842.1|CL171842 104_374_10889715_148_31774_003 Sorgh... 92 1e-016
gb|CW139439.1|CW139439 104_529_11135238_148_34909_021 Sorgh... 92 1e-016
gb|CW141974.1|CW141974 104_533_11136596_148_34941_078 Sorgh... 92 1e-016
gb|AW287684.2|AW287684 LG1_271_B05.b1_A002 Light Grown 1 (L... 92 1e-016
gb|BG557842.1|BG557842 EM1_55_A10.b1_A002 Embryo 1 (EM1) So... 92 1e-016
gb|CW141121.1|CW141121 104_532_11136149_116_34932_031 Sorgh... 90 5e-016
gb|CW467395.1|CW467395 fsbb001f219b03k0 Sorghum methylation... 90 5e-016
gb|CW090101.1|CW090101 104_435_10949088_114_32597_084 Sorgh... 84 3e-014
gb|BG411605.1|BG411605 EM1_58_H08.b1_A002 Embryo 1 (EM1) So... 84 3e-014
gb|BG557514.1|BG557514 EM1_54_B10.b1_A002 Embryo 1 (EM1) So... 84 3e-014
gb|CF427419.1|CF427419 PH1_1_A12.g1_A002 Phosphorous-defici... 84 3e-014
gb|CN145377.1|CN145377 WOUND1_28_C01.g1_A002 Wounded leaves... 84 3e-014
gb|CW301871.1|CW301871 104_785_11464426_148_36264_033 Sorgh... 78 2e-012
gb|CN141311.1|CN141311 OX1_50_E02.g1_A002 Oxidatively-stres... 78 2e-012
gb|CW139438.1|CW139438 104_529_11135238_116_34905_021 Sorgh... 72 1e-010
gb|CW168013.1|CW168013 104_577_11153917_148_36492_055 Sorgh... 72 1e-010
gb|CW224877.1|CW224877 104_662_11204056_116_37206_060 Sorgh... 72 1e-010
gb|CD463985.1|CD463985 ETH1_47_F10.g1_A002 Ethylene-treated... 72 1e-010
gb|AW677377.1|AW677377 DG1_6_A05.b1_A002 Dark Grown 1 (DG1)... 70 5e-010
gb|AW677398.1|AW677398 DG1_6_C05.b1_A002 Dark Grown 1 (DG1)... 70 5e-010
gb|AW923105.1|AW923105 DG1_49_F10.b1_A002 Dark Grown 1 (DG1... 70 5e-010
gb|BE358056.1|BE358056 DG1_24_E12.b1_A002 Dark Grown 1 (DG1... 70 5e-010
gb|BI643620.1|BI643620 DG1_91_G03.b1_A002 Dark Grown 1 (DG1... 70 5e-010
gb|BE362928.2|BE362928 DG1_91_A07.b1_A002 Dark Grown 1 (DG1... 70 5e-010
gb|CD222182.1|CD222182 CCC1_2_E09.g1_A007 Callus culture/ce... 70 5e-010
gb|CD222247.1|CD222247 CCC1_2_A06.g1_A007 Callus culture/ce... 70 5e-010
gb|CD225294.1|CD225294 CCC1_39_A01.g1_A007 Callus culture/c... 70 5e-010
gb|CW161070.1|CW161070 104_567_11150217_148_36416_033 Sorgh... 66 8e-009
gb|CW298153.1|CW298153 104_780_11462428_148_35653_006 Sorgh... 66 8e-009
gb|BE355901.1|BE355901 DG1_11_E04.g1_A002 Dark Grown 1 (DG1... 66 8e-009
gb|BZ626753.1|BZ626753 ih48b09.b1 WGS-SbicolorF (DH5a methy... 64 3e-008
gb|CL150041.1|CL150041 104_331_10778242_116_31356_178 Sorgh... 64 3e-008
gb|CL172252.1|CL172252 104_374_10890016_116_31775_304 Sorgh... 64 3e-008
gb|CW024958.1|CW024958 104_226_10487881_116_30524 Sorghum m... 64 3e-008
gb|CW098399.1|CW098399 104_464_11002986_116_34363_065 Sorgh... 64 3e-008
gb|CW098400.1|CW098400 104_464_11002986_148_34367_065 Sorgh... 64 3e-008
gb|CW173032.1|CW173032 104_584_11156623_148_36546_024 Sorgh... 64 3e-008
gb|CW177868.1|CW177868 104_591_11159260_148_36613_010 Sorgh... 64 3e-008
gb|CW226217.1|CW226217 104_664_11204768_148_37221_030 Sorgh... 64 3e-008
gb|BE358852.1|BE358852 DG1_32_D11.g1_A002 Dark Grown 1 (DG1... 64 3e-008
gb|BG239935.1|BG239935 OV1_30_H09.g1_A002 Ovary 1 (OV1) Sor... 64 3e-008
gb|BG240513.1|BG240513 OV1_30_H09.b1_A002 Ovary 1 (OV1) Sor... 64 3e-008
gb|BM328097.1|BM328097 PIC1_21_B02.g1_A002 Pathogen-infecte... 64 3e-008
gb|CD428024.1|CD428024 ETH1_32_C09.b1_A002 Ethylene-treated... 64 3e-008
gb|CD428130.1|CD428130 ETH1_32_C09.g1_A002 Ethylene-treated... 64 3e-008
gb|CD430662.1|CD430662 ETH1_20_G03.b1_A002 Ethylene-treated... 64 3e-008
gb|CD430702.1|CD430702 ETH1_20_G03.g1_A002 Ethylene-treated... 64 3e-008
gb|CN124361.1|CN124361 RHOH1_4_F03.b1_A002 Acid- and alkali... 64 3e-008
gb|CN129214.1|CN129214 RHOH1_34_D09.b3_A002 Acid- and alkal... 64 3e-008
gb|CN129302.1|CN129302 RHOH1_34_D09.g1_A002 Acid- and alkal... 64 3e-008
gb|CN143544.1|CN143544 WOUND1_17_A02.b1_A002 Wounded leaves... 64 3e-008
gb|CN143625.1|CN143625 WOUND1_17_A02.g1_A002 Wounded leaves... 64 3e-008
gb|CN149574.1|CN149574 WOUND1_63_D02.g1_A002 Wounded leaves... 64 3e-008
gb|CX610774.1|CX610774 ANR1_20_F02.g1_A002 Anaerobic roots ... 64 3e-008
gb|CW033159.1|CW033159 104_262_10501795_115_30362 Sorghum m... 62 1e-007
gb|CW036911.1|CW036911 104_268_10504039_114_30381 Sorghum m... 62 1e-007
gb|CW103666.1|CW103666 104_472_11012013_148_34436_089 Sorgh... 62 1e-007
gb|CW155745.1|CW155745 104_558_11146303_116_36367_026 Sorgh... 62 1e-007
gb|CW215449.1|CW215449 104_647_11194545_116_37165_035 Sorgh... 62 1e-007
gb|CW220174.1|CW220174 104_654_11197212_116_37148_036 Sorgh... 62 1e-007
gb|CW238007.1|CW238007 104_694_11216489_148_37400_069 Sorgh... 62 1e-007
gb|CW310613.1|CW310613 104_799_11469805_148_37433_049 Sorgh... 62 1e-007
gb|CW321790.1|CW321790 104_815_11475741_148_35942_091 Sorgh... 62 1e-007
gb|CW447900.1|CW447900 fsbb001f181d19k0 Sorghum methylation... 62 1e-007
gb|AW676810.1|AW676810 DG1_1_F08.b1_A002 Dark Grown 1 (DG1)... 62 1e-007
gb|AW676903.1|AW676903 DG1_2_H05.b1_A002 Dark Grown 1 (DG1)... 62 1e-007
gb|BE125671.1|BE125671 DG1_54_E06.b1_A002 Dark Grown 1 (DG1... 62 1e-007
gb|BF705100.1|BF705100 RHIZ2_1_D07.b1_A003 Rhizome2 (RHIZ2)... 62 1e-007
gb|BF705368.1|BF705368 RHIZ2_3_B07.b1_A003 Rhizome2 (RHIZ2)... 62 1e-007
gb|CD431749.1|CD431749 ETH1_10_F11.g1_A002 Ethylene-treated... 62 1e-007
gb|CN133158.1|CN133158 OX1_10_B06.g1_A002 Oxidatively-stres... 62 1e-007
gb|CN138660.1|CN138660 OX1_13_D12.b1_A002 Oxidatively-stres... 62 1e-007
gb|CW486287.1|CW486287 fsbb001f249h09f0 Sorghum methylation... 60 5e-007
gb|BE355802.1|BE355802 DG1_11_E04.b1_A002 Dark Grown 1 (DG1... 60 5e-007
gb|CN141237.1|CN141237 OX1_50_E02.b1_A002 Oxidatively-stres... 60 5e-007
gb|BF421110.1|BF421110 FM1_6_E04.g1_A003 Floral-Induced Mer... 58 2e-006
gb|BF421487.1|BF421487 FM1_8_D04.g1_A003 Floral-Induced Mer... 58 2e-006
gb|BF421496.1|BF421496 FM1_8_E04.g1_A003 Floral-Induced Mer... 58 2e-006
gb|CW032163.1|CW032163 104_261_10501223_115_30364 Sorghum m... 56 7e-006
gb|CW209075.1|CW209075 104_638_11189032_148_36983_050 Sorgh... 56 7e-006
gb|CW252633.1|CW252633 104_715_11224618_148_35091_033 Sorgh... 56 7e-006
gb|BE358825.1|BE358825 DG1_32_D11.b1_A002 Dark Grown 1 (DG1... 56 7e-006
gb|CD463102.1|CD463102 ETH1_42_D08.b1_A002 Ethylene-treated... 56 7e-006
gb|CN124436.1|CN124436 RHOH1_4_F03.g1_A002 Acid- and alkali... 56 7e-006
gb|CN134563.1|CN134563 OX1_27_D04.b1_A002 Oxidatively-stres... 56 7e-006
gb|CN134649.1|CN134649 OX1_27_D04.g1_A002 Oxidatively-stres... 56 7e-006
gb|CN135542.1|CN135542 OX1_37_B02.g1_A002 Oxidatively-stres... 56 7e-006
gb|CN149495.1|CN149495 WOUND1_63_D02.b1_A002 Wounded leaves... 56 7e-006
gb|CX610689.1|CX610689 ANR1_20_F02.b1_A002 Anaerobic roots ... 56 7e-006
gb|CW068471.1|CW068471 104_317_10525139_1_30096 Sorghum met... 54 3e-005
gb|CW137912.1|CW137912 104_525_11119926_116_34877_023 Sorgh... 54 3e-005
gb|CW137913.1|CW137913 104_525_11119926_148_34873_023 Sorgh... 54 3e-005
gb|CW141122.1|CW141122 104_532_11136149_148_34928_031 Sorgh... 54 3e-005
gb|CW144970.1|CW144970 104_537_11138222_116_34973_057 Sorgh... 54 3e-005
gb|CW144971.1|CW144971 104_537_11138222_148_34969_057 Sorgh... 54 3e-005
gb|CW301870.1|CW301870 104_785_11464426_116_36263_033 Sorgh... 54 3e-005
gb|CW467394.1|CW467394 fsbb001f219b03f0 Sorghum methylation... 54 3e-005
gb|AW678260.1|AW678260 WS1_14_C01.b1_A002 Water-stressed 1 ... 54 3e-005
gb|AW678342.1|AW678342 WS1_14_C01.g1_A002 Water-stressed 1 ... 54 3e-005
gb|AW679039.1|AW679039 WS1_22_H01.b1_A002 Water-stressed 1 ... 54 3e-005
gb|AW679107.1|AW679107 WS1_22_H01.g1_A002 Water-stressed 1 ... 54 3e-005
gb|BZ342179.1|BZ342179 ic81a06.b1 WGS-SbicolorF (JM107 adap... 52 1e-004
gb|CL187928.1|CL187928 104_404_10901237_114_32442_031 Sorgh... 52 1e-004
gb|CW512360.1|CW512360 115_1_10510471_1_30023 Sorghum unfil... 52 1e-004
gb|CW022096.1|CW022096 104_161_10431639_5_30007 Sorghum met... 52 1e-004
gb|CW036817.1|CW036817 104_268_10503984_115_30382 Sorghum m... 52 1e-004
gb|CW091410.1|CW091410 104_453_10998534_114_33029_025 Sorgh... 52 1e-004
gb|CW112321.1|CW112321 104_486_11104821_148_34541_093 Sorgh... 52 1e-004
gb|CW124983.1|CW124983 104_505_11112086_148_34712_063 Sorgh... 52 1e-004
gb|CW157339.1|CW157339 104_560_11147178_116_36386_069 Sorgh... 52 1e-004
gb|CW238006.1|CW238006 104_694_11216489_116_37395_069 Sorgh... 52 1e-004
gb|CW292718.1|CW292718 104_772_11414235_116_35579_002 Sorgh... 52 1e-004
gb|CW396616.1|CW396616 fsbb001f085c05k0 Sorghum methylation... 52 1e-004
gb|CW415526.1|CW415526 fsbb001f115k18f0 Sorghum methylation... 52 1e-004
gb|CW415527.1|CW415527 fsbb001f115k18k0 Sorghum methylation... 52 1e-004
gb|CN124295.1|CN124295 RHOH1_3_G12.g1_A002 Acid- and alkali... 52 1e-004
gb|CN125978.1|CN125978 RHOH1_14_A10.g1_A002 Acid- and alkal... 52 1e-004
gb|CN141562.1|CN141562 OX1_52_A06.g1_A002 Oxidatively-stres... 52 1e-004
gb|CF675644.1|CF675644 GST3 Subtractive cDNA library from s... 52 1e-004
gb|CX609701.1|CX609701 ANR1_14_F01.b1_A002 Anaerobic roots ... 52 1e-004
gb|CX622518.1|CX622518 GABR1_64_A06.g2_A002 GA- or brassino... 52 1e-004
gb|CW097287.1|CW097287 104_463_11002374_116_34345_025 Sorgh... 50 4e-004
gb|CW157340.1|CW157340 104_560_11147178_148_36385_069 Sorgh... 50 4e-004
gb|CW161660.1|CW161660 104_568_11150530_148_36435_037 Sorgh... 50 4e-004
gb|CW190530.1|CW190530 104_612_11174553_148_36834_043 Sorgh... 50 4e-004
gb|CW301982.1|CW301982 104_786_11464484_116_35663_080 Sorgh... 50 4e-004
gb|CW342336.1|CW342336 104_844_11486818_116_36180_045 Sorgh... 50 4e-004
gb|CW342337.1|CW342337 104_844_11486818_148_36179_045 Sorgh... 50 4e-004
gb|CW365897.1|CW365897 fsbb001f038k07k0 Sorghum methylation... 50 4e-004
gb|CW396435.1|CW396435 fsbb001f084n24f0 Sorghum methylation... 50 4e-004
gb|CW404467.1|CW404467 fsbb001f096j23f0 Sorghum methylation... 50 4e-004
gb|CW434447.1|CW434447 fsbb001f150c10f0 Sorghum methylation... 50 4e-004
gb|CW434881.1|CW434881 fsbb001f150m16f0 Sorghum methylation... 50 4e-004
gb|CW478504.1|CW478504 fsbb001f236g21f0 Sorghum methylation... 50 4e-004
gb|BE355015.1|BE355015 DG1_10_E05.b1_A002 Dark Grown 1 (DG1... 50 4e-004
gb|BG559403.1|BG559403 RHIZ2_54_D07.b1_A003 Rhizome2 (RHIZ2... 50 4e-004
gb|CD430586.1|CD430586 ETH1_19_E05.g1_A002 Ethylene-treated... 50 4e-004
gb|CN124218.1|CN124218 RHOH1_3_G12.b1_A002 Acid- and alkali... 50 4e-004
gb|CN125891.1|CN125891 RHOH1_14_A10.b1_A002 Acid- and alkal... 50 4e-004
gb|CN141484.1|CN141484 OX1_52_A06.b1_A002 Oxidatively-stres... 50 4e-004
gb|CX622438.1|CX622438 GABR1_64_A06.b2_A002 GA- or brassino... 50 4e-004
gb|CL150040.1|CL150040 104_331_10778242_114_31355_178 Sorgh... 48 0.002
gb|CL178881.1|CL178881 104_387_10894905_116_31906_201 Sorgh... 48 0.002
gb|CL179424.1|CL179424 104_388_10895295_148_31909_207 Sorgh... 48 0.002
gb|CW131231.1|CW131231 104_514_11115560_148_34789_030 Sorgh... 48 0.002
gb|CW209074.1|CW209074 104_638_11189032_116_36984_050 Sorgh... 48 0.002
gb|CW268578.1|CW268578 104_739_11401384_116_35309_058 Sorgh... 48 0.002
gb|CW273304.1|CW273304 104_745_11403819_116_35356_004 Sorgh... 48 0.002
gb|CW273305.1|CW273305 104_745_11403819_148_35360_004 Sorgh... 48 0.002
gb|CW365896.1|CW365896 fsbb001f038k07f0 Sorghum methylation... 48 0.002
gb|CW385200.1|CW385200 fsbb001f068j10k0 Sorghum methylation... 48 0.002
gb|CW401628.1|CW401628 fsbb001f092i09k0 Sorghum methylation... 48 0.002
gb|BE352946.1|BE352946 DG1_1_F08.g1_A002 Dark Grown 1 (DG1)... 48 0.002
gb|BE355164.1|BE355164 DG1_10_E05.g1_A002 Dark Grown 1 (DG1... 48 0.002
gb|BE359585.1|BE359585 DG1_54_E06.g2_A002 Dark Grown 1 (DG1... 48 0.002
gb|BG412766.1|BG412766 OV2_34_E08.b1_A002 Ovary 2 (OV2) Sor... 48 0.002
gb|BM323139.1|BM323139 PIC1_8_B06.b1_A002 Pathogen-infected... 48 0.002
gb|BM323592.1|BM323592 PIC1_21_B02.b1_A002 Pathogen-infecte... 48 0.002
gb|CD430870.1|CD430870 ETH1_5_F09.g1_A002 Ethylene-treated ... 48 0.002
gb|CD430899.1|CD430899 ETH1_5_E09.g1_A002 Ethylene-treated ... 48 0.002
gb|CD463131.1|CD463131 ETH1_42_D03.g1_A002 Ethylene-treated... 48 0.002
gb|CD463838.1|CD463838 ETH1_47_F10.b1_A002 Ethylene-treated... 48 0.002
gb|CN132197.1|CN132197 OX1_4_D12.g1_A002 Oxidatively-stress... 48 0.002
gb|CN137157.1|CN137157 OX1_55_B10.g1_A002 Oxidatively-stres... 48 0.002
gb|CN139737.1|CN139737 OX1_23_G08.g1_A002 Oxidatively-stres... 48 0.002
gb|CN141334.1|CN141334 OX1_50_G06.g1_A002 Oxidatively-stres... 48 0.002
gb|CN142356.1|CN142356 WOUND1_9_B05.g1_A002 Wounded leaves ... 48 0.002
gb|CN143356.1|CN143356 WOUND1_15_F02.g1_A002 Wounded leaves... 48 0.002
gb|CN148797.1|CN148797 WOUND1_58_G11.g1_A002 Wounded leaves... 48 0.002
gb|CN149218.1|CN149218 WOUND1_61_A02.g1_A002 Wounded leaves... 48 0.002
gb|CW090102.1|CW090102 104_435_10949088_116_32599_084 Sorgh... 46 0.007
gb|CW183587.1|CW183587 104_599_11164694_148_36677_055 Sorgh... 46 0.007
gb|CW218492.1|CW218492 104_652_11196219_116_37460_014 Sorgh... 46 0.007
gb|CW220175.1|CW220175 104_654_11197212_148_37147_036 Sorgh... 46 0.007
gb|CW279627.1|CW279627 104_754_11407179_148_35439_008 Sorgh... 46 0.007
gb|CW446759.1|CW446759 fsbb001f179j05f0 Sorghum methylation... 46 0.007
gb|CB925482.1|CB925482 ABA1_33_G05.g1_A012 Abscisic acid-tr... 46 0.007
gb|CD432214.1|CD432214 ETH1_26_E09.g1_A002 Ethylene-treated... 46 0.007
gb|CN129146.1|CN129146 RHOH1_33_F09.g1_A002 Acid- and alkal... 46 0.007
gb|CN140982.1|CN140982 OX1_48_C12.g1_A002 Oxidatively-stres... 46 0.007
gb|CN147630.1|CN147630 WOUND1_50_H12.g1_A002 Wounded leaves... 46 0.007
gb|CX622011.1|CX622011 GABR1_61_B06.g2_A002 GA- or brassino... 46 0.007
gb|CW039480.1|CW039480 104_272_10505527_114_30389 Sorghum m... 44 0.028
gb|CW137234.1|CW137234 104_523_11119182_148_34867_023 Sorgh... 44 0.028
gb|CW180136.1|CW180136 104_594_11160476_148_36633_072 Sorgh... 44 0.028
gb|CW218302.1|CW218302 104_651_11196114_116_37067_065 Sorgh... 44 0.028
gb|CW218303.1|CW218303 104_651_11196114_116_37459_065 Sorgh... 44 0.028
gb|CW218304.1|CW218304 104_651_11196114_148_37066_065 Sorgh... 44 0.028
gb|CW218305.1|CW218305 104_651_11196114_148_37458_065 Sorgh... 44 0.028
gb|CW259602.1|CW259602 104_726_11228516_116_35191_080 Sorgh... 44 0.028
gb|CW425036.1|CW425036 fsbb001f135k20f0 Sorghum methylation... 44 0.028
gb|CW434448.1|CW434448 fsbb001f150c10k0 Sorghum methylation... 44 0.028
gb|CW434882.1|CW434882 fsbb001f150m16k0 Sorghum methylation... 44 0.028
gb|CW443580.1|CW443580 fsbb001f163m02f0 Sorghum methylation... 44 0.028
gb|CW443581.1|CW443581 fsbb001f163m02k0 Sorghum methylation... 44 0.028
gb|CW490180.1|CW490180 fsbb001f275h22f0 Sorghum methylation... 44 0.028
gb|AW677154.1|AW677154 DG1_5_C08.b1_A002 Dark Grown 1 (DG1)... 44 0.028
gb|AW677374.1|AW677374 DG1_6_A02.b1_A002 Dark Grown 1 (DG1)... 44 0.028
gb|AW923329.1|AW923329 DG1_51_F12.b1_A002 Dark Grown 1 (DG1... 44 0.028
gb|BE361727.1|BE361727 DG1_82_F09.b1_A002 Dark Grown 1 (DG1... 44 0.028
gb|BE363072.1|BE363072 DG1_9_F01.b1_A002 Dark Grown 1 (DG1)... 44 0.028
gb|BF657540.1|BF657540 OV2_23_E04.b1_A002 Ovary 2 (OV2) Sor... 44 0.028
gb|BG557805.1|BG557805 EM1_53_E01.b1_A002 Embryo 1 (EM1) So... 44 0.028
gb|BM323141.1|BM323141 PIC1_8_B08.b1_A002 Pathogen-infected... 44 0.028
gb|BM324939.1|BM324939 PIC1_37_G06.b1_A002 Pathogen-infecte... 44 0.028
gb|CD210770.1|CD210770 HS1_49_H06.g1_A012 Heat-shocked seed... 44 0.028
gb|CD226845.1|CD226845 CCC1_48_H06.g1_A007 Callus culture/c... 44 0.028
gb|CD428844.1|CD428844 ETH1_1_D06.b1_A002 Ethylene-treated ... 44 0.028
gb|CD431418.1|CD431418 ETH1_8_A12.g1_A002 Ethylene-treated ... 44 0.028
gb|CD432560.1|CD432560 ETH1_30_D08.g1_A002 Ethylene-treated... 44 0.028
gb|CD463437.1|CD463437 ETH1_44_B03.g1_A002 Ethylene-treated... 44 0.028
gb|CF484985.1|CF484985 POL1_28_F04.g1_A002 Pollen Sorghum b... 44 0.028
gb|CN127401.1|CN127401 RHOH1_22_G02.g3_A002 Acid- and alkal... 44 0.028
gb|CN129295.1|CN129295 RHOH1_34_D02.g1_A002 Acid- and alkal... 44 0.028
gb|CN130350.1|CN130350 RHOH1_40_H08.g1_A002 Acid- and alkal... 44 0.028
gb|CN134143.1|CN134143 OX1_20_B11.g1_A002 Oxidatively-stres... 44 0.028
gb|CX615642.1|CX615642 GABR1_21_B02.g1_A002 GA- or brassino... 44 0.028
gb|CX622055.1|CX622055 GABR1_61_F04.g2_A002 GA- or brassino... 44 0.028
gb|BZ345790.1|BZ345790 ht57a10.b1 WGS-SbicolorF (JM107 adap... 42 0.11
gb|CW141973.1|CW141973 104_533_11136596_116_34937_078 Sorgh... 42 0.11
gb|CW303549.1|CW303549 104_788_11465298_116_35692_077 Sorgh... 42 0.11
gb|CW323788.1|CW323788 104_818_11476816_148_35907_062 Sorgh... 42 0.11
gb|CW500124.1|CW500124 fsbb001f295e09k0 Sorghum methylation... 42 0.11
gb|AW286086.2|AW286086 LG1_261_C01.b1_A002 Light Grown 1 (L... 42 0.11
gb|AW924966.1|AW924966 WS1_73_G01.b1_A002 Water-stressed 1 ... 42 0.11
gb|BE358144.1|BE358144 DG1_24_E12.g1_A002 Dark Grown 1 (DG1... 42 0.11
gb|BG557624.1|BG557624 EM1_54_B10.g1_A002 Embryo 1 (EM1) So... 42 0.11
gb|BG558048.1|BG558048 RHIZ2_66_A02.g1_A003 Rhizome2 (RHIZ2... 42 0.11
gb|CD219557.1|CD219557 CCC1_57_E04.g1_A007 Callus culture/c... 42 0.11
gb|CD229233.1|CD229233 CCC1_13_F08.g1_A007 Callus culture/c... 42 0.11
gb|CF427390.1|CF427390 PH1_1_A12.b1_A002 Phosphorous-defici... 42 0.11
gb|CN145297.1|CN145297 WOUND1_28_C01.b2_A002 Wounded leaves... 42 0.11
gb|BZ332713.1|BZ332713 hx30b08.g1 WGS-SbicolorF (JM107 adap... 40 0.43
gb|CL173618.1|CL173618 104_377_10891001_148_31792_137 Sorgh... 40 0.43
gb|CW173031.1|CW173031 104_584_11156623_116_36545_024 Sorgh... 40 0.43
gb|CW174221.1|CW174221 104_586_11157282_116_36561_075 Sorgh... 40 0.43
gb|CW177867.1|CW177867 104_591_11159260_116_36614_010 Sorgh... 40 0.43
gb|CW198655.1|CW198655 104_623_11183089_148_36841_007 Sorgh... 40 0.43
gb|CW204527.1|CW204527 104_632_11186589_148_36922_087 Sorgh... 40 0.43
gb|CW226216.1|CW226216 104_664_11204768_116_37222_030 Sorgh... 40 0.43
gb|CW279626.1|CW279626 104_754_11407179_116_35435_008 Sorgh... 40 0.43
gb|CW292080.1|CW292080 104_772_11413895_116_35577_096 Sorgh... 40 0.43
gb|CW299514.1|CW299514 104_782_11463156_148_35687_040 Sorgh... 40 0.43
gb|CW304322.1|CW304322 104_789_11465721_148_35705_043 Sorgh... 40 0.43
gb|CW310091.1|CW310091 104_799_11469537_116_35745_045 Sorgh... 40 0.43
gb|CW332341.1|CW332341 104_830_11481372_148_36038_048 Sorgh... 40 0.43
gb|CW416582.1|CW416582 fsbb001f117d07f0 Sorghum methylation... 40 0.43
gb|CW451353.1|CW451353 fsbb001f191g07f0 Sorghum methylation... 40 0.43
gb|CW493277.1|CW493277 fsbb001f283p16f0 Sorghum methylation... 40 0.43
gb|CW496603.1|CW496603 fsbb001f288o23k0 Sorghum methylation... 40 0.43
gb|AW671936.1|AW671936 LG1_353_D11.b1_A002 Light Grown 1 (L... 40 0.43
gb|AW676991.1|AW676991 DG1_3_D10.b1_A002 Dark Grown 1 (DG1)... 40 0.43
gb|BE357599.1|BE357599 DG1_21_C03.b1_A002 Dark Grown 1 (DG1... 40 0.43
gb|BE358620.1|BE358620 DG1_30_F09.b1_A002 Dark Grown 1 (DG1... 40 0.43
gb|BE593329.1|BE593329 WS1_100_D10.g1_A002 Water-stressed 1... 40 0.43
gb|BE593535.1|BE593535 WS1_100_D10.b1_A002 Water-stressed 1... 40 0.43
gb|BG560441.1|BG560441 RHIZ2_74_D06.b1_A003 Rhizome2 (RHIZ2... 40 0.43
gb|BM323138.1|BM323138 PIC1_8_B05.b1_A002 Pathogen-infected... 40 0.43
gb|CD232655.1|CD232655 SS1_46_H03.g1_A012 Salt-stressed see... 40 0.43
gb|CD462982.1|CD462982 ETH1_41_C06.g1_A002 Ethylene-treated... 40 0.43
gb|CD463182.1|CD463182 ETH1_42_F03.g1_A002 Ethylene-treated... 40 0.43
gb|CD463767.1|CD463767 ETH1_46_B02.g1_A002 Ethylene-treated... 40 0.43
gb|CF480112.1|CF480112 POL1_63_G02.g1_A002 Pollen Sorghum b... 40 0.43
gb|CN130505.1|CN130505 RHOH1_42_A05.b1_A002 Acid- and alkal... 40 0.43
gb|CX609787.1|CX609787 ANR1_14_F01.g1_A002 Anaerobic roots ... 40 0.43
>gb|CW395210.1|CW395210 fsbb001f083c11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f083c11, DNA
sequence
Length = 661
Score = 500 bits (252), Expect = e-139
Identities = 381/424 (89%)
Strand = Plus / Plus
Query: 102 acgacctgaaggtgctcggcgtgtggacgagcccgttcgtgatccgggtccgcatcgtgc 161
|||||| |||| |||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 164 acgacccgaagttgctgggcgtgtggacgagcccgttcgtgatccgtgtccgcatcgtgc 223
Query: 162 tcaacctgaagggcctggcgtacgagtacgtggaggaggacctcagcaacaagagcgcgc 221
| |||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 224 tgaacctgaaaggcctggcgtacgagtacgtggaggaggacctgggcagcaagagcgcgc 283
Query: 222 tcctcctggggtccaacccggtgcacaagagcgtgccggtgctcctccacgccggccgcg 281
||||| |||| ||||||||||||||||||| ||| || || |||||||||| ||||||||
Sbjct: 284 tcctcgtgggctccaacccggtgcacaagaccgtccccgtcctcctccacggcggccgcg 343
Query: 282 ccataaacgagtcccaggtcatcctgcagtacatcgacgaggtgtgggcggggacggggc 341
|||| |||||||||||| ||||||||||||||||||||||||||| | ||||| || |
Sbjct: 344 ccatcaacgagtcccagatcatcctgcagtacatcgacgaggtgtactccgggaccggcc 403
Query: 342 cggacgtgctgccggccgacccctacgagcgcgcggtggcgcggttctggggcgcgtaca 401
||| |||||||||| |||||||||||||||||||| |||| ||||||||| |||||||
Sbjct: 404 cggccgtgctgccgtccgacccctacgagcgcgcgacggcgaggttctgggcggcgtaca 463
Query: 402 tcgacgacaaggtggagtcggcgtggctggggatgctgttcaggtgcgcgaacgaggagg 461
|||||||||||||| ||||||||||||||||||| |||||| |||| | |||||||||
Sbjct: 464 tcgacgacaaggtgaggtcggcgtggctggggatggtgttcacgtgcaaggacgaggagg 523
Query: 462 agagggcggcggcggtggcgcgcgcccgcgaggcgctcgacgcgctggagggcgcgttcc 521
||||||||| ||| |||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 524 agagggcggaggccgtggcgcgcgccggcgaggcgctcgacacgctggagggcgcgttcg 583
Query: 522 ggga 525
||||
Sbjct: 584 ggga 587
Score = 81.8 bits (41), Expect = 1e-013
Identities = 47/49 (95%)
Strand = Plus / Plus
Query: 545 ttcttcggcggcgacgacatcgggttcgtggacgccgtgctcggcgggt 593
|||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 613 ttcttcggcggcgacggcatcgggttcgtggacgtcgtgctcggcgggt 661
>gb|BE360387.1|BE360387 DG1_63_F11.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 624
Score = 500 bits (252), Expect = e-139
Identities = 381/424 (89%)
Strand = Plus / Plus
Query: 102 acgacctgaaggtgctcggcgtgtggacgagcccgttcgtgatccgggtccgcatcgtgc 161
|||||| |||| |||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 117 acgacccgaagttgctgggcgtgtggacgagcccgttcgtgatccgtgtccgcatcgtgc 176
Query: 162 tcaacctgaagggcctggcgtacgagtacgtggaggaggacctcagcaacaagagcgcgc 221
| |||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 177 tgaacctgaaaggcctggcgtacgagtacgtggaggaggacctgggcagcaagagcgcgc 236
Query: 222 tcctcctggggtccaacccggtgcacaagagcgtgccggtgctcctccacgccggccgcg 281
||||| |||| ||||||||||||||||||| ||| || || |||||||||| ||||||||
Sbjct: 237 tcctcgtgggctccaacccggtgcacaagaccgtccccgtcctcctccacggcggccgcg 296
Query: 282 ccataaacgagtcccaggtcatcctgcagtacatcgacgaggtgtgggcggggacggggc 341
|||| |||||||||||| ||||||||||||||||||||||||||| | ||||| || |
Sbjct: 297 ccatcaacgagtcccagatcatcctgcagtacatcgacgaggtgtactccgggaccggcc 356
Query: 342 cggacgtgctgccggccgacccctacgagcgcgcggtggcgcggttctggggcgcgtaca 401
||| |||||||||| |||||||||||||||||||| |||| ||||||||| |||||||
Sbjct: 357 cggccgtgctgccgtccgacccctacgagcgcgcgacggcgaggttctgggcggcgtaca 416
Query: 402 tcgacgacaaggtggagtcggcgtggctggggatgctgttcaggtgcgcgaacgaggagg 461
|||||||||||||| ||||||||||||||||||| |||||| |||| | |||||||||
Sbjct: 417 tcgacgacaaggtgaggtcggcgtggctggggatggtgttcacgtgcaaggacgaggagg 476
Query: 462 agagggcggcggcggtggcgcgcgcccgcgaggcgctcgacgcgctggagggcgcgttcc 521
||||||||| ||| |||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 477 agagggcggaggccgtggcgcgcgccggcgaggcgctcgacacgctggagggcgcgttcg 536
Query: 522 ggga 525
||||
Sbjct: 537 ggga 540
Score = 81.8 bits (41), Expect = 1e-013
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 545 ttcttcggcggcgacgacatcgggttcgtggacgccgtgctcggcgggtacct 597
|||||||||||||||| ||||||||||||||||| ||||||| ||||||||||
Sbjct: 566 ttcttcggcggcgacggcatcgggttcgtggacgtcgtgctccgcgggtacct 618
>gb|BE594226.1|BE594226 WS1_103_H02.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 508
Score = 500 bits (252), Expect = e-139
Identities = 381/424 (89%)
Strand = Plus / Plus
Query: 102 acgacctgaaggtgctcggcgtgtggacgagcccgttcgtgatccgggtccgcatcgtgc 161
|||||| |||| |||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 10 acgacccgaagttgctgggcgtgtggacgagcccgttcgtgatccgtgtccgcatcgtgc 69
Query: 162 tcaacctgaagggcctggcgtacgagtacgtggaggaggacctcagcaacaagagcgcgc 221
| |||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 70 tgaacctgaaaggcctggcgtacgagtacgtggaggaggacctgggcagcaagagcgcgc 129
Query: 222 tcctcctggggtccaacccggtgcacaagagcgtgccggtgctcctccacgccggccgcg 281
||||| |||| ||||||||||||||||||| ||| || || |||||||||| ||||||||
Sbjct: 130 tcctcgtgggctccaacccggtgcacaagaccgtccccgtcctcctccacggcggccgcg 189
Query: 282 ccataaacgagtcccaggtcatcctgcagtacatcgacgaggtgtgggcggggacggggc 341
|||| |||||||||||| ||||||||||||||||||||||||||| | ||||| || |
Sbjct: 190 ccatcaacgagtcccagatcatcctgcagtacatcgacgaggtgtactccgggaccggcc 249
Query: 342 cggacgtgctgccggccgacccctacgagcgcgcggtggcgcggttctggggcgcgtaca 401
||| |||||||||| |||||||||||||||||||| |||| ||||||||| |||||||
Sbjct: 250 cggccgtgctgccgtccgacccctacgagcgcgcgacggcgaggttctgggcggcgtaca 309
Query: 402 tcgacgacaaggtggagtcggcgtggctggggatgctgttcaggtgcgcgaacgaggagg 461
|||||||||||||| ||||||||||||||||||| |||||| |||| | |||||||||
Sbjct: 310 tcgacgacaaggtgaggtcggcgtggctggggatggtgttcacgtgcaaggacgaggagg 369
Query: 462 agagggcggcggcggtggcgcgcgcccgcgaggcgctcgacgcgctggagggcgcgttcc 521
||||||||| ||| |||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 370 agagggcggaggccgtggcgcgcgccggcgaggcgctcgacacgctggagggcgcgttcg 429
Query: 522 ggga 525
||||
Sbjct: 430 ggga 433
Score = 83.8 bits (42), Expect = 3e-014
Identities = 48/50 (96%)
Strand = Plus / Plus
Query: 545 ttcttcggcggcgacgacatcgggttcgtggacgccgtgctcggcgggta 594
|||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 459 ttcttcggcggcgacggcatcgggttcgtggacgtcgtgctcggcgggta 508
>gb|CN132861.1|CN132861 OX1_8_E01.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_8_E01_A002 5', mRNA sequence
Length = 623
Score = 500 bits (252), Expect = e-139
Identities = 381/424 (89%)
Strand = Plus / Plus
Query: 102 acgacctgaaggtgctcggcgtgtggacgagcccgttcgtgatccgggtccgcatcgtgc 161
|||||| |||| |||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 127 acgacccgaagttgctgggcgtgtggacgagcccgttcgtgatccgtgtccgcatcgtgc 186
Query: 162 tcaacctgaagggcctggcgtacgagtacgtggaggaggacctcagcaacaagagcgcgc 221
| |||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 187 tgaacctgaaaggcctggcgtacgagtacgtggaggaggacctgggcagcaagagcgcgc 246
Query: 222 tcctcctggggtccaacccggtgcacaagagcgtgccggtgctcctccacgccggccgcg 281
||||| |||| ||||||||||||||||||| ||| || || |||||||||| ||||||||
Sbjct: 247 tcctcgtgggctccaacccggtgcacaagaccgtccccgtcctcctccacggcggccgcg 306
Query: 282 ccataaacgagtcccaggtcatcctgcagtacatcgacgaggtgtgggcggggacggggc 341
|||| |||||||||||| ||||||||||||||||||||||||||| | ||||| || |
Sbjct: 307 ccatcaacgagtcccagatcatcctgcagtacatcgacgaggtgtactccgggaccggcc 366
Query: 342 cggacgtgctgccggccgacccctacgagcgcgcggtggcgcggttctggggcgcgtaca 401
||| |||||||||| |||||||||||||||||||| |||| ||||||||| |||||||
Sbjct: 367 cggccgtgctgccgtccgacccctacgagcgcgcgacggcgaggttctgggcggcgtaca 426
Query: 402 tcgacgacaaggtggagtcggcgtggctggggatgctgttcaggtgcgcgaacgaggagg 461
|||||||||||||| ||||||||||||||||||| |||||| |||| | |||||||||
Sbjct: 427 tcgacgacaaggtgaggtcggcgtggctggggatggtgttcacgtgcaaggacgaggagg 486
Query: 462 agagggcggcggcggtggcgcgcgcccgcgaggcgctcgacgcgctggagggcgcgttcc 521
||||||||| ||| |||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 487 agagggcggaggccgtggcgcgcgccggcgaggcgctcgacacgctggagggcgcgttcg 546
Query: 522 ggga 525
||||
Sbjct: 547 ggga 550
Score = 79.8 bits (40), Expect = 5e-013
Identities = 46/48 (95%)
Strand = Plus / Plus
Query: 545 ttcttcggcggcgacgacatcgggttcgtggacgccgtgctcggcggg 592
|||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 576 ttcttcggcggcgacggcatcgggttcgtggacgtcgtgctcggcggg 623
>gb|CN139739.1|CN139739 OX1_23_G10.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_23_G10_A002 5', mRNA sequence
Length = 618
Score = 492 bits (248), Expect = e-137
Identities = 380/424 (89%)
Strand = Plus / Plus
Query: 102 acgacctgaaggtgctcggcgtgtggacgagcccgttcgtgatccgggtccgcatcgtgc 161
|||||| |||| |||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 104 acgacccgaagttgctgggcgtgtggacgagcccgttcgtgatccgtgtccgcatcgtgc 163
Query: 162 tcaacctgaagggcctggcgtacgagtacgtggaggaggacctcagcaacaagagcgcgc 221
| |||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 164 tgaacctgaaaggcctggcgtacgagtacgtggaggaggacctgggcagcaagagcgcgc 223
Query: 222 tcctcctggggtccaacccggtgcacaagagcgtgccggtgctcctccacgccggccgcg 281
||||| |||| ||||||||||||||||||| ||| || || |||||||||| ||||||||
Sbjct: 224 tcctcgtgggctccaacccggtgcacaagaccgtccccgtcctcctccacggcggccgcg 283
Query: 282 ccataaacgagtcccaggtcatcctgcagtacatcgacgaggtgtgggcggggacggggc 341
|||| |||||||||||| ||||||||||||||||||||||||||| | ||||| || |
Sbjct: 284 ccatcaacgagtcccagatcatcctgcagtacatcgacgaggtgtactccgggaccggcc 343
Query: 342 cggacgtgctgccggccgacccctacgagcgcgcggtggcgcggttctggggcgcgtaca 401
||| |||||||||| |||||||||||||||||||| |||| ||||||||| |||||||
Sbjct: 344 cggccgtgctgccgtccgacccctacgagcgcgcgacggcgaggttctgggcggcgtaca 403
Query: 402 tcgacgacaaggtggagtcggcgtggctggggatgctgttcaggtgcgcgaacgaggagg 461
|||||||||||||| ||||||||||||||||||| |||||| ||| | |||||||||
Sbjct: 404 tcgacgacaaggtgaggtcggcgtggctggggatggtgttcacttgcaaggacgaggagg 463
Query: 462 agagggcggcggcggtggcgcgcgcccgcgaggcgctcgacgcgctggagggcgcgttcc 521
||||||||| ||| |||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 464 agagggcggaggccgtggcgcgcgccagcgaggcgctcgacacgctggagggcgcgttcg 523
Query: 522 ggga 525
||||
Sbjct: 524 ggga 527
Score = 58.0 bits (29), Expect = 2e-006
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 545 ttcttcggcggcgacgacatcgggttcgtggacgccgtgctcggcgggtacctcggctgg 604
|||||||||||||| | |||| |||||||||||| |||||||| ||||||| || |||
Sbjct: 553 ttcttcggcggcgaaggcatctggttcgtggacgtagtgctcggtgggtaccaggggtgg 612
Query: 605 ttcgg 609
|||||
Sbjct: 613 ttcgg 617
>gb|BE356065.1|BE356065 DG1_122_C07.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 475
Score = 412 bits (208), Expect = e-113
Identities = 322/360 (89%)
Strand = Plus / Plus
Query: 102 acgacctgaaggtgctcggcgtgtggacgagcccgttcgtgatccgggtccgcatcgtgc 161
|||||| |||| |||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 116 acgacccgaagttgctgggcgtgtggacgagcccgttcgtgatccgtgtccgcatcgtgc 175
Query: 162 tcaacctgaagggcctggcgtacgagtacgtggaggaggacctcagcaacaagagcgcgc 221
| |||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 176 tgaacctgaaaggcctggcgtacgagtacgtggaggaggacctgggcagcaagagcgcgc 235
Query: 222 tcctcctggggtccaacccggtgcacaagagcgtgccggtgctcctccacgccggccgcg 281
||||| |||| ||||||||||||||||||| ||| || || |||||||||| ||||||||
Sbjct: 236 tcctcgtgggctccaacccggtgcacaagaccgtccccgtcctcctccacggcggccgcg 295
Query: 282 ccataaacgagtcccaggtcatcctgcagtacatcgacgaggtgtgggcggggacggggc 341
|||| |||||||||||| ||||||||||||||||||||||||||| | ||||| || |
Sbjct: 296 ccatcaacgagtcccagatcatcctgcagtacatcgacgaggtgtactccgggaccggcc 355
Query: 342 cggacgtgctgccggccgacccctacgagcgcgcggtggcgcggttctggggcgcgtaca 401
||| |||||||||| |||||||||||||||||||| |||| ||||||||| |||||||
Sbjct: 356 cggccgtgctgccgtccgacccctacgagcgcgcgacggcgaggttctgggcggcgtaca 415
Query: 402 tcgacgacaaggtggagtcggcgtggctggggatgctgttcaggtgcgcgaacgaggagg 461
|||||||||||||| ||||||||||||||||||| |||||| |||| | |||||||||
Sbjct: 416 tcgacgacaaggtgaggtcggcgtggctggggatggtgttcacgtgcaaggacgaggagg 475
>gb|CW311029.1|CW311029 104_800_11470021_116_35753_057 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11470021, DNA
sequence
Length = 576
Score = 391 bits (197), Expect = e-106
Identities = 296/329 (89%)
Strand = Plus / Plus
Query: 102 acgacctgaaggtgctcggcgtgtggacgagcccgttcgtgatccgggtccgcatcgtgc 161
|||||| |||| |||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 248 acgacccgaagttgctgggcgtgtggacgagcccgttcgtgatccgtgtccgcatcgtgc 307
Query: 162 tcaacctgaagggcctggcgtacgagtacgtggaggaggacctcagcaacaagagcgcgc 221
| |||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 308 tgaacctgaaaggcctggcgtacgagtacgtggaggaggacctgggcagcaagagcgcgc 367
Query: 222 tcctcctggggtccaacccggtgcacaagagcgtgccggtgctcctccacgccggccgcg 281
||||| |||| ||||||||||||||||||| ||| || || |||||||||| ||||||||
Sbjct: 368 tcctcgtgggctccaacccggtgcacaagaccgtccccgtcctcctccacggcggccgcg 427
Query: 282 ccataaacgagtcccaggtcatcctgcagtacatcgacgaggtgtgggcggggacggggc 341
|||| |||||||||||| ||||||||||||||||||||||||||| | ||||| || |
Sbjct: 428 ccatcaacgagtcccagatcatcctgcagtacatcgacgaggtgtactccgggaccggcc 487
Query: 342 cggacgtgctgccggccgacccctacgagcgcgcggtggcgcggttctggggcgcgtaca 401
||| |||||||||| |||||||||||||||||||| |||| ||||||||| |||||||
Sbjct: 488 cggccgtgctgccgtccgacccctacgagcgcgcgacggcgaggttctgggcggcgtaca 547
Query: 402 tcgacgacaaggtggagtcggcgtggctg 430
|||||||||||||| |||||||||||||
Sbjct: 548 tcgacgacaaggtgaggtcggcgtggctg 576
>gb|CW370296.1|CW370296 fsbb001f045c09k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f045c09, DNA
sequence
Length = 611
Score = 375 bits (189), Expect = e-102
Identities = 303/341 (88%)
Strand = Plus / Minus
Query: 185 gagtacgtggaggaggacctcagcaacaagagcgcgctcctcctggggtccaacccggtg 244
|||| ||||||||||||||| ||| |||||||||||||||| |||| ||||||||||||
Sbjct: 611 gagtccgtggaggaggacctgggcagcaagagcgcgctcctcgtgggctccaacccggtg 552
Query: 245 cacaagagcgtgccggtgctcctccacgccggccgcgccataaacgagtcccaggtcatc 304
||||||| ||| || || |||||||||| |||||||||||| |||||||||||| |||||
Sbjct: 551 cacaagaccgtccccgtcctcctccacggcggccgcgccatcaacgagtcccagatcatc 492
Query: 305 ctgcagtacatcgacgaggtgtgggcggggacggggccggacgtgctgccggccgacccc 364
|||||||||||||||||||||| | ||||| || |||| |||||||||| ||||||||
Sbjct: 491 ctgcagtacatcgacgaggtgtactccgggaccggcccggccgtgctgccgtccgacccc 432
Query: 365 tacgagcgcgcggtggcgcggttctggggcgcgtacatcgacgacaaggtggagtcggcg 424
|||||||||||| |||| ||||||||| ||||||||||||||||||||| |||||||
Sbjct: 431 tacgagcgcgcgacggcgaggttctgggcggcgtacatcgacgacaaggtgaggtcggcg 372
Query: 425 tggctggggatgctgttcaggtgcgcgaacgaggaggagagggcggcggcggtggcgcgc 484
|||||||||||| |||||| |||| | |||||||||||||||||| ||| |||||||||
Sbjct: 371 tggctggggatggtgttcacgtgcaaggacgaggaggagagggcggaggccgtggcgcgc 312
Query: 485 gcccgcgaggcgctcgacgcgctggagggcgcgttccggga 525
||| |||||||||||||| ||||||||||||||||| ||||
Sbjct: 311 gccggcgaggcgctcgacacgctggagggcgcgttcgggga 271
Score = 281 bits (142), Expect = 7e-074
Identities = 193/210 (91%)
Strand = Plus / Minus
Query: 545 ttcttcggcggcgacgacatcgggttcgtggacgccgtgctcggcgggtacctcggctgg 604
|||||||||||||||| ||||||||||||||||| |||||||||||||||||| || |||
Sbjct: 245 ttcttcggcggcgacggcatcgggttcgtggacgtcgtgctcggcgggtacctggggtgg 186
Query: 605 ttcggggccgtcggcaggatcatcgggagcaggctcatcgacccggcccggacgccgctg 664
||||| ||||||| | |||||||||| ||||| | |||||||||||| |||||||||||
Sbjct: 185 ttcggcgccgtcgcgaagatcatcgggcgcagggtgatcgacccggccaggacgccgctg 126
Query: 665 ctggccgcgtgggaggaccggttccgcgccgccgacgtggccaagggcgtcgtgcccgac 724
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct: 125 ctggccgcgtgggaggaccggttccgcgccgccgatgtggcgaagggcgtcgtgccggac 66
Query: 725 gacctcgacaagatgctcgcgttcctgcag 754
||| |||||||| |||||||||||||||||
Sbjct: 65 gacgtcgacaaggtgctcgcgttcctgcag 36
>gb|BG649436.1|BG649436 EM1_79_D06.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 389
Score = 335 bits (169), Expect = 5e-090
Identities = 247/273 (90%)
Strand = Plus / Plus
Query: 102 acgacctgaaggtgctcggcgtgtggacgagcccgttcgtgatccgggtccgcatcgtgc 161
|||||| |||| |||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 117 acgacccgaagttgctgggcgtgtggacgagcccgttcgtgatccgtgtccgcatcgtgc 176
Query: 162 tcaacctgaagggcctggcgtacgagtacgtggaggaggacctcagcaacaagagcgcgc 221
| |||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 177 tgaacctgaaaggcctggcgtacgagtacgtggaggaggacctgggcagcaagagcgcgc 236
Query: 222 tcctcctggggtccaacccggtgcacaagagcgtgccggtgctcctccacgccggccgcg 281
||||| |||| ||||||||||||||||||| ||| || || |||||||||| ||||||||
Sbjct: 237 tcctcgtgggctccaacccggtgcacaagaccgtccccgtcctcctccacggcggccgcg 296
Query: 282 ccataaacgagtcccaggtcatcctgcagtacatcgacgaggtgtgggcggggacggggc 341
|||| |||||||||||| ||||||||||||||||||||||||||| | ||||| || |
Sbjct: 297 ccatcaacgagtcccagatcatcctgcagtacatcgacgaggtgtactccgggaccggcc 356
Query: 342 cggacgtgctgccggccgacccctacgagcgcg 374
||| |||||||||| ||||||||||||||||||
Sbjct: 357 cggccgtgctgccgtccgacccctacgagcgcg 389
>gb|CW067692.1|CW067692 104_315_10524451_114_30124 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10524451, DNA
sequence
Length = 591
Score = 305 bits (154), Expect = 5e-081
Identities = 229/254 (90%)
Strand = Plus / Plus
Query: 102 acgacctgaaggtgctcggcgtgtggacgagcccgttcgtgatccgggtccgcatcgtgc 161
|||||| |||| |||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 337 acgacccgaagttgctgggcgtgtggacgagcccgttcgtgatccgtgtccgcatcgtgc 396
Query: 162 tcaacctgaagggcctggcgtacgagtacgtggaggaggacctcagcaacaagagcgcgc 221
| |||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 397 tgaacctgaaaggcctggcgtacgagtacgtggaggaggacctgggcagcaagagcgcgc 456
Query: 222 tcctcctggggtccaacccggtgcacaagagcgtgccggtgctcctccacgccggccgcg 281
||||| |||| ||||||||||||||||||| ||| || || |||||||||| ||||||||
Sbjct: 457 tcctcgtgggctccaacccggtgcacaagaccgtccccgtcctcctccacggcggccgcg 516
Query: 282 ccataaacgagtcccaggtcatcctgcagtacatcgacgaggtgtgggcggggacggggc 341
|||| |||||||||||| ||||||||||||||||||||||||||| | ||||| || |
Sbjct: 517 ccatcaacgagtcccagatcatcctgcagtacatcgacgaggtgtactccgggaccggcc 576
Query: 342 cggacgtgctgccg 355
||| ||||||||||
Sbjct: 577 cgggcgtgctgccg 590
>gb|CW370295.1|CW370295 fsbb001f045c09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f045c09, DNA
sequence
Length = 526
Score = 289 bits (146), Expect = 3e-076
Identities = 207/226 (91%), Gaps = 1/226 (0%)
Strand = Plus / Plus
Query: 102 acgacctgaaggtgctcggcgtgtggacgagcccgttcgtgatccgggtccgcatcgtgc 161
|||||| |||| |||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 259 acgacccgaagttgctgggcgtgtggacgagcccgttcgtgatccgtgtccgcatcgtgc 318
Query: 162 tcaacctgaagggcctggcgtacgagtacgtggaggaggacctcagcaacaagagcgcgc 221
| |||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 319 tgaacctgaaaggcctggcgtacgagtacgtggaggaggacctgggcagcaagagcgcgc 378
Query: 222 tcctcctggggtccaacccggtgcacaagagcgtgccggtgctcctccacgccggccgcg 281
||||| |||| ||||||||||||||||||| ||| || || |||||||||| ||||||||
Sbjct: 379 tcctcgtgggctccaacccggtgcacaagaccgtccccgtcctcctccacggcggccgcg 438
Query: 282 ccataaacgagtcccag-gtcatcctgcagtacatcgacgaggtgt 326
|||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 439 ccatcaacgagtcccagaatcatcctgcagtacatcgacgaggtgt 484
>gb|CW311030.1|CW311030 104_800_11470021_148_35757_057 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11470021, DNA
sequence
Length = 643
Score = 281 bits (142), Expect = 7e-074
Identities = 193/210 (91%)
Strand = Plus / Minus
Query: 545 ttcttcggcggcgacgacatcgggttcgtggacgccgtgctcggcgggtacctcggctgg 604
|||||||||||||||| ||||||||||||||||| |||||||||||||||||| || |||
Sbjct: 399 ttcttcggcggcgacggcatcgggttcgtggacgtcgtgctcggcgggtacctggggtgg 340
Query: 605 ttcggggccgtcggcaggatcatcgggagcaggctcatcgacccggcccggacgccgctg 664
||||| ||||||| | |||||||||| ||||| | |||||||||||| |||||||||||
Sbjct: 339 ttcggcgccgtcgcgaagatcatcgggcgcagggtgatcgacccggccaggacgccgctg 280
Query: 665 ctggccgcgtgggaggaccggttccgcgccgccgacgtggccaagggcgtcgtgcccgac 724
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct: 279 ctggccgcgtgggaggaccggttccgcgccgccgatgtggcgaagggcgtcgtgccggac 220
Query: 725 gacctcgacaagatgctcgcgttcctgcag 754
||| |||||||| |||||||||||||||||
Sbjct: 219 gacgtcgacaaggtgctcgcgttcctgcag 190
Score = 236 bits (119), Expect = 4e-060
Identities = 194/219 (88%)
Strand = Plus / Minus
Query: 307 gcagtacatcgacgaggtgtgggcggggacggggccggacgtgctgccggccgaccccta 366
|||||||||||||||||||| | ||||| || |||| |||||||||| ||||||||||
Sbjct: 643 gcagtacatcgacgaggtgtactccgggaccggcccggccgtgctgccgtccgaccccta 584
Query: 367 cgagcgcgcggtggcgcggttctggggcgcgtacatcgacgacaaggtggagtcggcgtg 426
|||||||||| |||| ||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 583 cgagcgcgcgacggcgaggttctgggcggcgtacatcgacgacaaggtgaggtcggcgtg 524
Query: 427 gctggggatgctgttcaggtgcgcgaacgaggaggagagggcggcggcggtggcgcgcgc 486
|||||||||| |||||| |||| | |||||||||||||||||| ||| |||||||||||
Sbjct: 523 gctggggatggtgttcacgtgcaaggacgaggaggagagggcggaggccgtggcgcgcgc 464
Query: 487 ccgcgaggcgctcgacgcgctggagggcgcgttccggga 525
| |||||||||||||| ||||||||||||||||| ||||
Sbjct: 463 cggcgaggcgctcgacacgctggagggcgcgttcgggga 425
Score = 52.0 bits (26), Expect = 1e-004
Identities = 48/55 (87%), Gaps = 4/55 (7%)
Strand = Plus / Minus
Query: 854 tcactcagttttgctt----cttccgtcaataatcggtgtgctgaatacatgtac 904
|||||||||||||||| | ||||||||||||||||||||| |||| ||||||
Sbjct: 55 tcactcagttttgctttgttcgtccgtcaataatcggtgtgcttaataaatgtac 1
>gb|BE593909.1|BE593909 WS1_103_H02.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 663
Score = 281 bits (142), Expect = 7e-074
Identities = 193/210 (91%)
Strand = Plus / Plus
Query: 545 ttcttcggcggcgacgacatcgggttcgtggacgccgtgctcggcgggtacctcggctgg 604
|||||||||||||||| ||||||||||||||||| |||||||||||||||||| || |||
Sbjct: 248 ttcttcggcggcgacggcatcgggttcgtggacgtcgtgctcggcgggtacctggggtgg 307
Query: 605 ttcggggccgtcggcaggatcatcgggagcaggctcatcgacccggcccggacgccgctg 664
||||| ||||||| | |||||||||| ||||| | |||||||||||| |||||||||||
Sbjct: 308 ttcggcgccgtcgcgaagatcatcgggcgcagggtgatcgacccggccaggacgccgctg 367
Query: 665 ctggccgcgtgggaggaccggttccgcgccgccgacgtggccaagggcgtcgtgcccgac 724
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct: 368 ctggccgcgtgggaggaccggttccgcgccgccgatgtggcgaagggcgtcgtgccggac 427
Query: 725 gacctcgacaagatgctcgcgttcctgcag 754
||| |||||||| |||||||||||||||||
Sbjct: 428 gacgtcgacaaggtgctcgcgttcctgcag 457
Score = 242 bits (122), Expect = 6e-062
Identities = 197/222 (88%)
Strand = Plus / Plus
Query: 304 cctgcagtacatcgacgaggtgtgggcggggacggggccggacgtgctgccggccgaccc 363
||||||||||||||||||||||| | ||||| || |||| |||||||||| |||||||
Sbjct: 1 cctgcagtacatcgacgaggtgtactccgggaccggcccggccgtgctgccgtccgaccc 60
Query: 364 ctacgagcgcgcggtggcgcggttctggggcgcgtacatcgacgacaaggtggagtcggc 423
||||||||||||| |||| ||||||||| ||||||||||||||||||||| ||||||
Sbjct: 61 ctacgagcgcgcgacggcgaggttctgggcggcgtacatcgacgacaaggtgaggtcggc 120
Query: 424 gtggctggggatgctgttcaggtgcgcgaacgaggaggagagggcggcggcggtggcgcg 483
||||||||||||| |||||| |||| | |||||||||||||||||| ||| ||||||||
Sbjct: 121 gtggctggggatggtgttcacgtgcaaggacgaggaggagagggcggaggccgtggcgcg 180
Query: 484 cgcccgcgaggcgctcgacgcgctggagggcgcgttccggga 525
|||| |||||||||||||| ||||||||||||||||| ||||
Sbjct: 181 cgccggcgaggcgctcgacacgctggagggcgcgttcgggga 222
Score = 67.9 bits (34), Expect = 2e-009
Identities = 56/63 (88%), Gaps = 4/63 (6%)
Strand = Plus / Plus
Query: 854 tcactcagttttgctt----cttccgtcaataatcggtgtgctgaatacatgtacaacag 909
|||||||||||||||| | ||||||||||||||||||||| |||| |||||||||||
Sbjct: 592 tcactcagttttgctttgttcgtccgtcaataatcggtgtgcttaataaatgtacaacag 651
Query: 910 ctg 912
|||
Sbjct: 652 ctg 654
>gb|CW495714.1|CW495714 fsbb001f287j19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f287j19, DNA
sequence
Length = 674
Score = 234 bits (118), Expect = 1e-059
Identities = 187/210 (89%)
Strand = Plus / Plus
Query: 545 ttcttcggcggcgacgacatcgggttcgtggacgccgtgctcggcgggtacctcggctgg 604
|||||||||||||||| |||| |||||||||| |||||||||||||||||||| || |||
Sbjct: 448 ttcttcggcggcgacggcatcaggttcgtggatgccgtgctcggcgggtacctggggtgg 507
Query: 605 ttcggggccgtcggcaggatcatcgggagcaggctcatcgacccggcccggacgccgctg 664
||||| |||||||| | |||||||||| ||||| | ||||||||| | ||||||||||
Sbjct: 508 ttcggcgccgtcgggaagatcatcgggcgcagggtgatcgacccgactaagacgccgctg 567
Query: 665 ctggccgcgtgggaggaccggttccgcgccgccgacgtggccaagggcgtcgtgcccgac 724
|||||||||||| ||||||||||||||| |||||| ||||| |||||||||||||| ||
Sbjct: 568 ctggccgcgtggcaggaccggttccgcgtcgccgatgtggcgaagggcgtcgtgccgaac 627
Query: 725 gacctcgacaagatgctcgcgttcctgcag 754
||| |||||||| |||||||||||||||||
Sbjct: 628 gacgtcgacaaggtgctcgcgttcctgcag 657
>gb|CW495715.1|CW495715 fsbb001f287j19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f287j19, DNA
sequence
Length = 752
Score = 234 bits (118), Expect = 1e-059
Identities = 187/210 (89%)
Strand = Plus / Minus
Query: 545 ttcttcggcggcgacgacatcgggttcgtggacgccgtgctcggcgggtacctcggctgg 604
|||||||||||||||| |||| |||||||||| |||||||||||||||||||| || |||
Sbjct: 709 ttcttcggcggcgacggcatcaggttcgtggatgccgtgctcggcgggtacctggggtgg 650
Query: 605 ttcggggccgtcggcaggatcatcgggagcaggctcatcgacccggcccggacgccgctg 664
||||| |||||||| | |||||||||| ||||| | ||||||||| | ||||||||||
Sbjct: 649 ttcggcgccgtcgggaagatcatcgggcgcagggtgatcgacccgactaagacgccgctg 590
Query: 665 ctggccgcgtgggaggaccggttccgcgccgccgacgtggccaagggcgtcgtgcccgac 724
|||||||||||| ||||||||||||||| |||||| ||||| |||||||||||||| ||
Sbjct: 589 ctggccgcgtggcaggaccggttccgcgtcgccgatgtggcgaagggcgtcgtgccgaac 530
Query: 725 gacctcgacaagatgctcgcgttcctgcag 754
||| |||||||| |||||||||||||||||
Sbjct: 529 gacgtcgacaaggtgctcgcgttcctgcag 500
>gb|AW746008.1|AW746008 WS1_38_H05.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 584
Score = 232 bits (117), Expect = 6e-059
Identities = 165/181 (91%)
Strand = Plus / Plus
Query: 574 ggacgccgtgctcggcgggtacctcggctggttcggggccgtcggcaggatcatcgggag 633
||||| |||||||||||||||||| || |||||||| ||||||| | |||||||||| |
Sbjct: 1 ggacgtcgtgctcggcgggtacctggggtggttcggcgccgtcgcgaagatcatcgggcg 60
Query: 634 caggctcatcgacccggcccggacgccgctgctggccgcgtgggaggaccggttccgcgc 693
|||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cagggtgatcgacccggccaggacgccgctgctggccgcgtgggaggaccggttccgcgc 120
Query: 694 cgccgacgtggccaagggcgtcgtgcccgacgacctcgacaagatgctcgcgttcctgca 753
|||||| ||||| |||||||||||||| |||||| |||||||| ||||||||||||||||
Sbjct: 121 cgccgatgtggcgaagggcgtcgtgccggacgacgtcgacaaggtgctcgcgttcctgca 180
Query: 754 g 754
|
Sbjct: 181 g 181
Score = 67.9 bits (34), Expect = 2e-009
Identities = 56/63 (88%), Gaps = 4/63 (6%)
Strand = Plus / Plus
Query: 854 tcactcagttttgctt----cttccgtcaataatcggtgtgctgaatacatgtacaacag 909
|||||||||||||||| | ||||||||||||||||||||| |||| |||||||||||
Sbjct: 316 tcactcagttttgctttgttcgtccgtcaataatcggtgtgcttaataaatgtacaacag 375
Query: 910 ctg 912
|||
Sbjct: 376 ctg 378
>gb|BE360463.1|BE360463 DG1_63_F11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 146
Score = 186 bits (94), Expect = 3e-045
Identities = 127/138 (92%)
Strand = Plus / Plus
Query: 562 catcgggttcgtggacgccgtgctcggcgggtacctcggctggttcggggccgtcggcag 621
||||||||||||||||| |||||||||||||||||| || |||||||| ||||||| |
Sbjct: 5 catcgggttcgtggacgtcgtgctcggcgggtacctggggtggttcggcgccgtcgcgaa 64
Query: 622 gatcatcgggagcaggctcatcgacccggcccggacgccgctgctggccgcgtgggagga 681
|||||||||| ||||| | |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 65 gatcatcgggcgcagggtgatcgacccggccaggacgccgctgctggccgcgtgggagga 124
Query: 682 ccggttccgcgccgccga 699
||||||||||||||||||
Sbjct: 125 ccggttccgcgccgccga 142
>gb|CW040599.1|CW040599 104_274_10506221_114_30467 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506221, DNA
sequence
Length = 629
Score = 184 bits (93), Expect = 1e-044
Identities = 175/201 (87%), Gaps = 1/201 (0%)
Strand = Plus / Minus
Query: 545 ttcttcggcggcgacgacatcgggttcgtggacgccgtgctcggcgggtacctcggctgg 604
|||||||||||||||| |||| |||||||||| |||||||||||||||||||| || |||
Sbjct: 201 ttcttcggcggcgacggcatcaggttcgtggatgccgtgctcggcgggtacctggggtgg 142
Query: 605 ttcggggccgtcggcaggatcatcgggagcaggctcatcgacccggcccggacgccgctg 664
||||| |||||||| | ||||||||| || || | ||||||||| | ||||||||||
Sbjct: 141 ttcggcgccgtcgggaaaatcatcgggcgctgggtaatcgacccgactaagacgccgctg 82
Query: 665 ctggccgcgtgggaggaccggttccgcgccgccgacgtggccaagggcg-tcgtgcccga 723
|||||||||||| ||||||||||||||| |||||| ||||| ||||||| ||||||| |
Sbjct: 81 ctggccgcgtggcaggaccggttccgcgtcgccgatgtggcaaagggcgttcgtgccgaa 22
Query: 724 cgacctcgacaagatgctcgc 744
|||| |||||||| |||||||
Sbjct: 21 cgacgtcgacaaggtgctcgc 1
>gb|CW032162.1|CW032162 104_261_10501223_114_30363 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10501223, DNA
sequence
Length = 540
Score = 109 bits (55), Expect = 6e-022
Identities = 142/171 (83%)
Strand = Plus / Plus
Query: 107 ctgaaggtgctcggcgtgtggacgagcccgttcgtgatccgggtccgcatcgtgctcaac 166
|||||| |||||||||||||| ||||||||||||| ||| ||| |||| ||| |||||||
Sbjct: 327 ctgaagctgctcggcgtgtggtcgagcccgttcgttatcagggcccgcgtcgcgctcaac 386
Query: 167 ctgaagggcctggcgtacgagtacgtggaggaggacctcagcaacaagagcgcgctcctc 226
|| |||||||| || ||| ||||| ||||| ||||||| | |||||||| |||||||
Sbjct: 387 ctcaagggcctcgcctaccgatacgtcgaggacgacctcaactgcaagagcgagctcctc 446
Query: 227 ctggggtccaacccggtgcacaagagcgtgccggtgctcctccacgccggc 277
|| | |||||||| ||||||| | ||||| ||||||||||||| ||||
Sbjct: 447 ctcgcctccaaccccgtgcacaccaaggtgcctgtgctcctccacgacggc 497
>gb|CD463195.1|CD463195 ETH1_42_D08.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_42_D08_A002 5', mRNA sequence
Length = 721
Score = 109 bits (55), Expect = 6e-022
Identities = 142/171 (83%)
Strand = Plus / Plus
Query: 107 ctgaaggtgctcggcgtgtggacgagcccgttcgtgatccgggtccgcatcgtgctcaac 166
|||||| |||||||||||||| ||||||||||||| ||| ||| |||| ||| |||||||
Sbjct: 75 ctgaagctgctcggcgtgtggtcgagcccgttcgttatcagggcccgcgtcgcgctcaac 134
Query: 167 ctgaagggcctggcgtacgagtacgtggaggaggacctcagcaacaagagcgcgctcctc 226
|| |||||||| || ||| ||||| ||||| ||||||| | |||||||| |||||||
Sbjct: 135 ctcaagggcctcgcctaccgatacgtcgaggacgacctcaactgcaagagcgagctcctc 194
Query: 227 ctggggtccaacccggtgcacaagagcgtgccggtgctcctccacgccggc 277
|| | |||||||| ||||||| | ||||| ||||||||||||| ||||
Sbjct: 195 ctcgcctccaaccccgtgcacaccaaggtgcctgtgctcctccacgacggc 245
Score = 56.0 bits (28), Expect = 7e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 641 atcgacccggcccggacgccgctgctggccgcgtgggaggaccggttc 688
|||||||| ||| ||||||||||||||| ||||||| ||||||||||
Sbjct: 609 atcgaccccgccaagacgccgctgctggcggcgtgggcggaccggttc 656
>gb|CN134135.1|CN134135 OX1_20_B02.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_20_B02_A002 5', mRNA sequence
Length = 687
Score = 109 bits (55), Expect = 6e-022
Identities = 142/171 (83%)
Strand = Plus / Plus
Query: 107 ctgaaggtgctcggcgtgtggacgagcccgttcgtgatccgggtccgcatcgtgctcaac 166
|||||| |||||||||||||| ||||||||||||| ||| ||| |||| ||| |||||||
Sbjct: 39 ctgaagctgctcggcgtgtggtcgagcccgttcgttatcagggcccgcgtcgcgctcaac 98
Query: 167 ctgaagggcctggcgtacgagtacgtggaggaggacctcagcaacaagagcgcgctcctc 226
|| |||||||| || ||| ||||| ||||| ||||||| | |||||||| |||||||
Sbjct: 99 ctcaagggcctcgcctaccgatacgtcgaggacgacctcaactgcaagagcgagctcctc 158
Query: 227 ctggggtccaacccggtgcacaagagcgtgccggtgctcctccacgccggc 277
|| | |||||||| ||||||| | ||||| ||||||||||||| ||||
Sbjct: 159 ctcgcctccaaccccgtgcacaccaaggtgcctgtgctcctccacgacggc 209
Score = 56.0 bits (28), Expect = 7e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 641 atcgacccggcccggacgccgctgctggccgcgtgggaggaccggttc 688
|||||||| ||| ||||||||||||||| ||||||| ||||||||||
Sbjct: 575 atcgaccccgccaagacgccgctgctggcggcgtgggcggaccggttc 622
>gb|CN135950.1|CN135950 OX1_39_H10.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_39_H10_A002 5', mRNA sequence
Length = 459
Score = 109 bits (55), Expect = 6e-022
Identities = 142/171 (83%)
Strand = Plus / Plus
Query: 107 ctgaaggtgctcggcgtgtggacgagcccgttcgtgatccgggtccgcatcgtgctcaac 166
|||||| |||||||||||||| ||||||||||||| ||| ||| |||| ||| |||||||
Sbjct: 33 ctgaagctgctcggcgtgtggtcgagcccgttcgttatcagggcccgcgtcgcgctcaac 92
Query: 167 ctgaagggcctggcgtacgagtacgtggaggaggacctcagcaacaagagcgcgctcctc 226
|| |||||||| || ||| ||||| ||||| ||||||| | |||||||| |||||||
Sbjct: 93 ctcaagggcctcgcctaccgatacgtcgaggacgacctcaactgcaagagcgagctcctc 152
Query: 227 ctggggtccaacccggtgcacaagagcgtgccggtgctcctccacgccggc 277
|| | |||||||| ||||||| | ||||| ||||||||||||| ||||
Sbjct: 153 ctcgcctccaaccccgtgcacaccaaggtgcctgtgctcctccacgacggc 203
>gb|CW252632.1|CW252632 104_715_11224618_116_35095_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11224618, DNA
sequence
Length = 663
Score = 103 bits (52), Expect = 3e-020
Identities = 136/164 (82%)
Strand = Plus / Plus
Query: 107 ctgaaggtgctcggcgtgtggacgagcccgttcgtgatccgggtccgcatcgtgctcaac 166
|||||| |||||||||||||| ||||||||||||| ||| ||| |||| ||| |||||||
Sbjct: 500 ctgaagctgctcggcgtgtggtcgagcccgttcgttatcagggcccgcgtcgcgctcaac 559
Query: 167 ctgaagggcctggcgtacgagtacgtggaggaggacctcagcaacaagagcgcgctcctc 226
|| |||||||| || ||| ||||| ||||| ||||||| | |||||||| |||||||
Sbjct: 560 ctcaagggcctcgcctaccgatacgtcgaggacgacctcaactgcaagagcgagctcctc 619
Query: 227 ctggggtccaacccggtgcacaagagcgtgccggtgctcctcca 270
|| | |||||||| ||||||| | ||||| |||||||||||
Sbjct: 620 ctcgcctccaaccccgtgcacaccaaggtgcctgtgctcctcca 663
>gb|CW226157.1|CW226157 104_664_11204738_148_37217_013 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11204738, DNA
sequence
Length = 647
Score = 101 bits (51), Expect = 1e-019
Identities = 141/171 (82%)
Strand = Plus / Minus
Query: 107 ctgaaggtgctcggcgtgtggacgagcccgttcgtgatccgggtccgcatcgtgctcaac 166
|||||| |||| ||||||||| ||||||| ||| | | |||||| ||||||||||||
Sbjct: 405 ctgaagctgctgggcgtgtgggacagcccgtacgtcaacagggtccaaatcgtgctcaac 346
Query: 167 ctgaagggcctggcgtacgagtacgtggaggaggacctcagcaacaagagcgcgctcctc 226
|| |||||||| ||||||||||| ||||| |||||| ||||||||||| ||||||
Sbjct: 345 ctcaagggcctcagctacgagtacgtcgaggaagacctcctcaacaagagcgagctcctt 286
Query: 227 ctggggtccaacccggtgcacaagagcgtgccggtgctcctccacgccggc 277
|| |||||||||||||||||||| ||||| |||||| |||||| ||||
Sbjct: 285 ctccagtccaacccggtgcacaagaaggtgcccgtgctcatccacgacggc 235
>gb|CW298152.1|CW298152 104_780_11462428_116_35649_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11462428, DNA
sequence
Length = 609
Score = 101 bits (51), Expect = 1e-019
Identities = 141/171 (82%)
Strand = Plus / Plus
Query: 107 ctgaaggtgctcggcgtgtggacgagcccgttcgtgatccgggtccgcatcgtgctcaac 166
|||||| |||| ||||||||| ||||||| ||| | | |||||| ||||||||||||
Sbjct: 26 ctgaagctgctgggcgtgtgggacagcccgtacgtcaacagggtccaaatcgtgctcaac 85
Query: 167 ctgaagggcctggcgtacgagtacgtggaggaggacctcagcaacaagagcgcgctcctc 226
|| |||||||| ||||||||||| ||||| |||||| ||||||||||| ||||||
Sbjct: 86 ctcaagggcctcagctacgagtacgtcgaggaagacctcctcaacaagagcgagctcctt 145
Query: 227 ctggggtccaacccggtgcacaagagcgtgccggtgctcctccacgccggc 277
|| |||||||||||||||||||| ||||| |||||| |||||| ||||
Sbjct: 146 ctccagtccaacccggtgcacaagaaggtgcccgtgctcatccacgacggc 196
Score = 52.0 bits (26), Expect = 1e-004
Identities = 90/110 (81%), Gaps = 6/110 (5%)
Strand = Plus / Plus
Query: 504 cgctggagggcgcgttccgggactgctccagggggagg-----ccatt-cttcggcggcg 557
||||||||||||||||| ||||||||||| | |||||| | | | |||||||||||
Sbjct: 420 cgctggagggcgcgttcagggactgctccggcgggaggtacgtcgactacttcggcggcg 479
Query: 558 acgacatcgggttcgtggacgccgtgctcggcgggtacctcggctggttc 607
||| | ||||||||||||||| ||||| ||| | ||||| || ||||||
Sbjct: 480 acggcgtcgggttcgtggacgtggtgctgggcagctacctggggtggttc 529
Score = 44.1 bits (22), Expect = 0.028
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 654 ggacgccgctgctggccgcgtgggaggaccggtt 687
|||||||||| ||||||||||||| ||| |||||
Sbjct: 576 ggacgccgctcctggccgcgtggggggagcggtt 609
>gb|CW366630.1|CW366630 fsbb001f039l10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f039l10, DNA
sequence
Length = 679
Score = 101 bits (51), Expect = 1e-019
Identities = 141/171 (82%)
Strand = Plus / Minus
Query: 107 ctgaaggtgctcggcgtgtggacgagcccgttcgtgatccgggtccgcatcgtgctcaac 166
|||||| |||| ||||||||| ||||||| ||| | | |||||| ||||||||||||
Sbjct: 230 ctgaagctgctgggcgtgtgggacagcccgtacgtcaacagggtccaaatcgtgctcaac 171
Query: 167 ctgaagggcctggcgtacgagtacgtggaggaggacctcagcaacaagagcgcgctcctc 226
|| |||||||| ||||||||||| ||||| |||||| ||||||||||| ||||||
Sbjct: 170 ctcaagggcctcagctacgagtacgtcgaggaagacctcctcaacaagagcgagctcctt 111
Query: 227 ctggggtccaacccggtgcacaagagcgtgccggtgctcctccacgccggc 277
|| |||||||||||||||||||| ||||| |||||| |||||| ||||
Sbjct: 110 ctccagtccaacccggtgcacaagaaggtgcccgtgctcatccacgacggc 60
>gb|CW248190.1|CW248190 104_709_11222168_116_35030_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11222168, DNA
sequence
Length = 668
Score = 99.6 bits (50), Expect = 5e-019
Identities = 137/166 (82%)
Strand = Plus / Plus
Query: 107 ctgaaggtgctcggcgtgtggacgagcccgttcgtgatccgggtccgcatcgtgctcaac 166
|||||| |||| ||| | ||||| ||||||||||||||| ||| ||| ||| |||||||
Sbjct: 432 ctgaagctgctgggcctatggaccagcccgttcgtgatcagggcacgcctcgcgctcaac 491
Query: 167 ctgaagggcctggcgtacgagtacgtggaggaggacctcagcaacaagagcgcgctcctc 226
|| ||||||||| ||||||||||| ||||||||| ||| ||||||||| |||||||
Sbjct: 492 ctcaagggcctgagctacgagtacgtcgaggaggacgtcaagaacaagagccagctcctc 551
Query: 227 ctggggtccaacccggtgcacaagagcgtgccggtgctcctccacg 272
|| | |||||| || || ||||||| ||||| |||||| ||||||
Sbjct: 552 ctcgcgtccaatcccgttcacaagaaggtgcccgtgctcatccacg 597
>gb|CW248191.1|CW248191 104_709_11222168_148_35026_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11222168, DNA
sequence
Length = 618
Score = 99.6 bits (50), Expect = 5e-019
Identities = 137/166 (82%)
Strand = Plus / Minus
Query: 107 ctgaaggtgctcggcgtgtggacgagcccgttcgtgatccgggtccgcatcgtgctcaac 166
|||||| |||| ||| | ||||| ||||||||||||||| ||| ||| ||| |||||||
Sbjct: 553 ctgaagctgctgggcctatggaccagcccgttcgtgatcagggcacgcctcgcgctcaac 494
Query: 167 ctgaagggcctggcgtacgagtacgtggaggaggacctcagcaacaagagcgcgctcctc 226
|| ||||||||| ||||||||||| ||||||||| ||| ||||||||| |||||||
Sbjct: 493 ctcaagggcctgagctacgagtacgtcgaggaggacgtcaagaacaagagccagctcctc 434
Query: 227 ctggggtccaacccggtgcacaagagcgtgccggtgctcctccacg 272
|| | |||||| || || ||||||| ||||| |||||| ||||||
Sbjct: 433 ctcgcgtccaatcccgttcacaagaaggtgcccgtgctcatccacg 388
Score = 40.1 bits (20), Expect = 0.43
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 504 cgctggagggcgcgttccgggactgctccaggggga 539
||||||| ||||||||| ||||||||||| |||||
Sbjct: 64 cgctggaaagcgcgttccaggactgctccaagggga 29
>gb|BI643627.1|BI643627 DG1_92_B06.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 542
Score = 99.6 bits (50), Expect = 5e-019
Identities = 137/166 (82%)
Strand = Plus / Plus
Query: 107 ctgaaggtgctcggcgtgtggacgagcccgttcgtgatccgggtccgcatcgtgctcaac 166
|||||| |||| ||| | ||||| ||||||||||||||| ||| ||| ||| |||||||
Sbjct: 136 ctgaagctgctgggcctatggaccagcccgttcgtgatcagggcacgcctcgcgctcaac 195
Query: 167 ctgaagggcctggcgtacgagtacgtggaggaggacctcagcaacaagagcgcgctcctc 226
|| ||||||||| ||||||||||| ||||||||| ||| ||||||||| |||||||
Sbjct: 196 ctcaagggcctgagctacgagtacgtcgaggaggacgtcaagaacaagagccagctcctc 255
Query: 227 ctggggtccaacccggtgcacaagagcgtgccggtgctcctccacg 272
|| | |||||| || || ||||||| ||||| |||||| ||||||
Sbjct: 256 ctcgcgtccaatcccgttcacaagaaggtgcccgtgctcatccacg 301
>gb|CN138744.1|CN138744 OX1_13_D12.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_13_D12_A002 5', mRNA sequence
Length = 608
Score = 99.6 bits (50), Expect = 5e-019
Identities = 137/166 (82%)
Strand = Plus / Plus
Query: 107 ctgaaggtgctcggcgtgtggacgagcccgttcgtgatccgggtccgcatcgtgctcaac 166
|||||| |||| ||| | ||||| ||||||||||||||| ||| ||| ||| |||||||
Sbjct: 130 ctgaagctgctgggcctatggaccagcccgttcgtgatcagggcacgcctcgcgctcaac 189
Query: 167 ctgaagggcctggcgtacgagtacgtggaggaggacctcagcaacaagagcgcgctcctc 226
|| ||||||||| ||||||||||| ||||||||| ||| ||||||||| |||||||
Sbjct: 190 ctcaagggcctgagctacgagtacgtcgaggaggacgtcaagaacaagagccagctcctc 249
Query: 227 ctggggtccaacccggtgcacaagagcgtgccggtgctcctccacg 272
|| | |||||| || || ||||||| ||||| |||||| ||||||
Sbjct: 250 ctcgcgtccaatcccgttcacaagaaggtgcccgtgctcatccacg 295
Score = 40.1 bits (20), Expect = 0.43
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 504 cgctggagggcgcgttccgggactgctccaggggga 539
||||||| ||||||||| ||||||||||| |||||
Sbjct: 533 cgctggaaagcgcgttccaggactgctccaagggga 568
>gb|CW095836.1|CW095836 104_461_11001557_148_34328_027 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11001557, DNA
sequence
Length = 583
Score = 93.7 bits (47), Expect = 3e-017
Identities = 104/123 (84%)
Strand = Plus / Minus
Query: 155 atcgtgctcaacctgaagggcctggcgtacgagtacgtggaggaggacctcagcaacaag 214
|||||||||||||| |||||||| ||||||||||| ||||| |||||| |||||||
Sbjct: 534 atcgtgctcaacctcaagggcctcagctacgagtacgtcgaggaagacctcctcaacaag 475
Query: 215 agcgcgctcctcctggggtccaacccggtgcacaagagcgtgccggtgctcctccacgcc 274
|||| |||||| || |||||||||||||||||||| ||||| |||||| |||||| |
Sbjct: 474 agcgagctccttctccagtccaacccggtgcacaagaaggtgcccgtgctcatccacgac 415
Query: 275 ggc 277
|||
Sbjct: 414 ggc 412
Score = 52.0 bits (26), Expect = 1e-004
Identities = 90/110 (81%), Gaps = 6/110 (5%)
Strand = Plus / Minus
Query: 504 cgctggagggcgcgttccgggactgctccagggggagg-----ccatt-cttcggcggcg 557
||||||||||||||||| ||||||||||| | |||||| | | | |||||||||||
Sbjct: 188 cgctggagggcgcgttcagggactgctccggcgggaggtacgtcgactacttcggcggcg 129
Query: 558 acgacatcgggttcgtggacgccgtgctcggcgggtacctcggctggttc 607
||| | ||||||||||||||| ||||| ||| | ||||| || ||||||
Sbjct: 128 acggcgtcgggttcgtggacgtggtgctgggcagctacctggggtggttc 79
Score = 40.1 bits (20), Expect = 0.43
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 654 ggacgccgctgctggccgcgtggg 677
|||||||||| |||||||||||||
Sbjct: 32 ggacgccgctcctggccgcgtggg 9
>gb|BF421185.1|BF421185 FM1_6_E04.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 440
Score = 93.7 bits (47), Expect = 3e-017
Identities = 104/123 (84%)
Strand = Plus / Plus
Query: 155 atcgtgctcaacctgaagggcctggcgtacgagtacgtggaggaggacctcagcaacaag 214
|||||||||||||| |||||||| ||||||||||| ||||| |||||| |||||||
Sbjct: 62 atcgtgctcaacctcaagggcctcagctacgagtacgtcgaggaagacctcctcaacaag 121
Query: 215 agcgcgctcctcctggggtccaacccggtgcacaagagcgtgccggtgctcctccacgcc 274
|||| |||||| || |||||||||||||||||||| ||||| |||||| |||||| |
Sbjct: 122 agcgagctccttctcaagtccaacccggtgcacaagaaggtgcccgtgctcatccacgac 181
Query: 275 ggc 277
|||
Sbjct: 182 ggc 184
Score = 50.1 bits (25), Expect = 4e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 504 cgctggagggcgcgttccgggactgctcc 532
||||||||||||||||| |||||||||||
Sbjct: 407 cgctggagggcgcgttcagggactgctcc 435
>gb|BF421398.1|BF421398 FM1_8_D04.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 508
Score = 93.7 bits (47), Expect = 3e-017
Identities = 104/123 (84%)
Strand = Plus / Plus
Query: 155 atcgtgctcaacctgaagggcctggcgtacgagtacgtggaggaggacctcagcaacaag 214
|||||||||||||| |||||||| ||||||||||| ||||| |||||| |||||||
Sbjct: 62 atcgtgctcaacctcaagggcctcagctacgagtacgtcgaggaagacctcctcaacaag 121
Query: 215 agcgcgctcctcctggggtccaacccggtgcacaagagcgtgccggtgctcctccacgcc 274
|||| |||||| || |||||||||||||||||||| ||||| |||||| |||||| |
Sbjct: 122 agcgagctccttctcaagtccaacccggtgcacaagaaggtgcccgtgctcatccacgac 181
Query: 275 ggc 277
|||
Sbjct: 182 ggc 184
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 504 cgctggagggcgcgttccgggactgctccagggggagg 541
||||||||||||||||| ||||||||||| | ||||||
Sbjct: 408 cgctggagggcgcgttcagggactgctccggcgggagg 445
>gb|CL171842.1|CL171842 104_374_10889715_148_31774_003 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10889715, DNA
sequence
Length = 698
Score = 91.7 bits (46), Expect = 1e-016
Identities = 136/166 (81%)
Strand = Plus / Plus
Query: 107 ctgaaggtgctcggcgtgtggacgagcccgttcgtgatccgggtccgcatcgtgctcaac 166
|||||| |||| |||| |||| ||||||| ||||||| ||| || ||| | | ||| ||
Sbjct: 404 ctgaagctgctgggcgcgtggccgagccccttcgtgaaccgcgtgcgcgtggcgctgcac 463
Query: 167 ctgaagggcctggcgtacgagtacgtggaggaggacctcagcaacaagagcgcgctcctc 226
|| |||||||| | ||||||| |||||||||||||||||| ||||||||||| | |||
Sbjct: 464 ctcaagggcctcgagtacgagaacgtggaggaggacctcaccaacaagagcgaccagctc 523
Query: 227 ctggggtccaacccggtgcacaagagcgtgccggtgctcctccacg 272
|| | |||||||| || ||||||| ||||| |||||||||||||
Sbjct: 524 ctcgcctccaaccccgtccacaagaaggtgcccgtgctcctccacg 569
>gb|CW139439.1|CW139439 104_529_11135238_148_34909_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11135238, DNA
sequence
Length = 423
Score = 91.7 bits (46), Expect = 1e-016
Identities = 118/142 (83%)
Strand = Plus / Minus
Query: 131 agcccgttcgtgatccgggtccgcatcgtgctcaacctgaagggcctggcgtacgagtac 190
||||||||||||||| ||| ||| ||| ||||||||| ||||||||| |||||||||
Sbjct: 374 agcccgttcgtgatcagggcacgcctcgcgctcaacctcaagggcctgagctacgagtac 315
Query: 191 gtggaggaggacctcagcaacaagagcgcgctcctcctggggtccaacccggtgcacaag 250
|| ||||||||| ||| ||||||||| ||||||||| | |||||| || || ||||||
Sbjct: 314 gtcgaggaggacgtcaagaacaagagccagctcctcctcgcgtccaatcccgttcacaag 255
Query: 251 agcgtgccggtgctcctccacg 272
| ||||| |||||| ||||||
Sbjct: 254 aaggtgcccgtgctcatccacg 233
>gb|CW141974.1|CW141974 104_533_11136596_148_34941_078 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11136596, DNA
sequence
Length = 674
Score = 91.7 bits (46), Expect = 1e-016
Identities = 136/166 (81%)
Strand = Plus / Plus
Query: 107 ctgaaggtgctcggcgtgtggacgagcccgttcgtgatccgggtccgcatcgtgctcaac 166
|||||| |||| |||| |||| ||||||| ||||||| ||| || ||| | | ||| ||
Sbjct: 245 ctgaagctgctgggcgcgtggccgagccccttcgtgaaccgcgtgcgcgtggcgctgcac 304
Query: 167 ctgaagggcctggcgtacgagtacgtggaggaggacctcagcaacaagagcgcgctcctc 226
|| |||||||| | ||||||| |||||||||||||||||| ||||||||||| | |||
Sbjct: 305 ctcaagggcctcgagtacgagaacgtggaggaggacctcaccaacaagagcgaccagctc 364
Query: 227 ctggggtccaacccggtgcacaagagcgtgccggtgctcctccacg 272
|| | |||||||| || ||||||| ||||| |||||||||||||
Sbjct: 365 ctcgcctccaaccccgtccacaagaaggtgcccgtgctcctccacg 410
>gb|AW287684.2|AW287684 LG1_271_B05.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 319
Score = 91.7 bits (46), Expect = 1e-016
Identities = 136/166 (81%)
Strand = Plus / Plus
Query: 107 ctgaaggtgctcggcgtgtggacgagcccgttcgtgatccgggtccgcatcgtgctcaac 166
|||||| |||| |||| |||| ||||||| ||||||| ||| || ||| | | ||| ||
Sbjct: 98 ctgaagctgctgggcgcgtggccgagccccttcgtgaaccgcgtgcgcgtggcgctgcac 157
Query: 167 ctgaagggcctggcgtacgagtacgtggaggaggacctcagcaacaagagcgcgctcctc 226
|| |||||||| | ||||||| |||||||||||||||||| ||||||||||| | |||
Sbjct: 158 ctcaagggcctcgagtacgagaacgtggaggaggacctcaccaacaagagcgaccagctc 217
Query: 227 ctggggtccaacccggtgcacaagagcgtgccggtgctcctccacg 272
|| | |||||||| || ||||||| ||||| |||||||||||||
Sbjct: 218 ctcgcctccaaccccgtccacaagaaggtgcccgtgctcctccacg 263
>gb|BG557842.1|BG557842 EM1_55_A10.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 384
Score = 91.7 bits (46), Expect = 1e-016
Identities = 136/166 (81%)
Strand = Plus / Plus
Query: 107 ctgaaggtgctcggcgtgtggacgagcccgttcgtgatccgggtccgcatcgtgctcaac 166
|||||| |||| |||| |||| ||||||| ||||||| ||| || ||| | | ||| ||
Sbjct: 93 ctgaagctgctgggcgcgtggccgagccccttcgtgaaccgcgtgcgcgtggcgctgcac 152
Query: 167 ctgaagggcctggcgtacgagtacgtggaggaggacctcagcaacaagagcgcgctcctc 226
|| |||||||| | ||||||| |||||||||||||||||| ||||||||||| | |||
Sbjct: 153 ctcaagggcctcgagtacgagaacgtggaggaggacctcaccaacaagagcgaccagctc 212
Query: 227 ctggggtccaacccggtgcacaagagcgtgccggtgctcctccacg 272
|| | |||||||| || ||||||| ||||| |||||||||||||
Sbjct: 213 ctcgcctccaaccccgtccacaagaaggtgcccgtgctcctccacg 258
>gb|CW141121.1|CW141121 104_532_11136149_116_34932_031 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11136149, DNA
sequence
Length = 564
Score = 89.7 bits (45), Expect = 5e-016
Identities = 117/141 (82%)
Strand = Plus / Plus
Query: 182 tacgagtacgtggaggaggacctcagcaacaagagcgcgctcctcctggggtccaacccg 241
||||||||| | |||||||||||| |||||||||||| ||||| || |||||||||||
Sbjct: 167 tacgagtacatcgaggaggacctcggcaacaagagcgatctcctgctccggtccaacccg 226
Query: 242 gtgcacaagagcgtgccggtgctcctccacgccggccgcgccataaacgagtcccaggtc 301
|||||||||| |||||||| ||| || ||| ||||||| | | |||||| | ||
Sbjct: 227 gtgcacaagaaggtgccggtcctcatcgacggcggccgcccggtgtgcgagtctctcgtg 286
Query: 302 atcctgcagtacatcgacgag 322
|||||||||||||||||||||
Sbjct: 287 atcctgcagtacatcgacgag 307
>gb|CW467395.1|CW467395 fsbb001f219b03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f219b03, DNA
sequence
Length = 603
Score = 89.7 bits (45), Expect = 5e-016
Identities = 117/141 (82%)
Strand = Plus / Plus
Query: 182 tacgagtacgtggaggaggacctcagcaacaagagcgcgctcctcctggggtccaacccg 241
||||||||| | |||||||||||| |||||||||||| ||||| || |||||||||||
Sbjct: 336 tacgagtacatcgaggaggacctcggcaacaagagcgatctcctgctccggtccaacccg 395
Query: 242 gtgcacaagagcgtgccggtgctcctccacgccggccgcgccataaacgagtcccaggtc 301
|||||||||| |||||||| ||| || ||| ||||||| | | |||||| | ||
Sbjct: 396 gtgcacaagaaggtgccggtcctcatcgacggcggccgcccggtgtgcgagtctctcgtg 455
Query: 302 atcctgcagtacatcgacgag 322
|||||||||||||||||||||
Sbjct: 456 atcctgcagtacatcgacgag 476
>gb|CW090101.1|CW090101 104_435_10949088_114_32597_084 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10949088, DNA
sequence
Length = 671
Score = 83.8 bits (42), Expect = 3e-014
Identities = 111/134 (82%)
Strand = Plus / Plus
Query: 117 tcggcgtgtggacgagcccgttcgtgatccgggtccgcatcgtgctcaacctgaagggcc 176
|||||| |||| |||||||||||||||| ||||| || ||| |||| || ||||||
Sbjct: 155 tcggcgggtgggcgagcccgttcgtgatgcgggtgtgcgtcgcgctccggctcaagggcg 214
Query: 177 tggcgtacgagtacgtggaggaggacctcagcaacaagagcgcgctcctcctggggtcca 236
|||||||||||| | || ||||||| | | |||| ||||||||||| ||||| | |||||
Sbjct: 215 tggcgtacgagttcctgcaggaggagcccggcaagaagagcgcgctgctcctcgcgtcca 274
Query: 237 acccggtgcacaag 250
|||| |||||||||
Sbjct: 275 accccgtgcacaag 288
>gb|BG411605.1|BG411605 EM1_58_H08.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 281
Score = 83.8 bits (42), Expect = 3e-014
Identities = 135/166 (81%)
Strand = Plus / Plus
Query: 107 ctgaaggtgctcggcgtgtggacgagcccgttcgtgatccgggtccgcatcgtgctcaac 166
|||||| |||| |||| |||| ||||||| ||||||| ||| || ||| | | ||| ||
Sbjct: 93 ctgaagctgctgggcgcgtggccgagccccttcgtgaaccgcgtgcgcgtggcgctgcac 152
Query: 167 ctgaagggcctggcgtacgagtacgtggaggaggacctcagcaacaagagcgcgctcctc 226
|| |||||||| | |||||| |||||||||||||||||| ||||||||||| | |||
Sbjct: 153 ctcaagggcctcgagtacgacaacgtggaggaggacctcaccaacaagagcgaccagctc 212
Query: 227 ctggggtccaacccggtgcacaagagcgtgccggtgctcctccacg 272
|| | |||||||| || ||||||| ||||| |||||||||||||
Sbjct: 213 ctcgcctccaaccccgtccacaagaaggtgcccgtgctcctccacg 258
>gb|BG557514.1|BG557514 EM1_54_B10.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 521
Score = 83.8 bits (42), Expect = 3e-014
Identities = 135/166 (81%)
Strand = Plus / Plus
Query: 107 ctgaaggtgctcggcgtgtggacgagcccgttcgtgatccgggtccgcatcgtgctcaac 166
|||||| |||| |||| |||| ||||||| ||||||| ||| || ||| | | ||| ||
Sbjct: 93 ctgaagctgctgggcgcgtggccgagccccttcgtgaaccgcgtgcgcgtggcgctgcac 152
Query: 167 ctgaagggcctggcgtacgagtacgtggaggaggacctcagcaacaagagcgcgctcctc 226
|| |||||||| | ||||||| |||||||||||||||||| ||||||||||| | |||
Sbjct: 153 ctcaagggcctcgagtacgagaacgtggaggaggacctcaccaacaagagcgaccagctc 212
Query: 227 ctggggtccaacccggtgcacaagagcgtgccggtgctcctccacg 272
|| | |||||||| || ||||||| | ||| |||||||||||||
Sbjct: 213 ctcgcctccaaccccgtccacaagaaggagcccgtgctcctccacg 258
>gb|CF427419.1|CF427419 PH1_1_A12.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_1_A12_A002 5', mRNA sequence
Length = 611
Score = 83.8 bits (42), Expect = 3e-014
Identities = 135/166 (81%)
Strand = Plus / Plus
Query: 107 ctgaaggtgctcggcgtgtggacgagcccgttcgtgatccgggtccgcatcgtgctcaac 166
|||||| |||| |||| |||| ||||||| ||||||| ||| || ||| | | ||| ||
Sbjct: 145 ctgaagctgctgggcgcgtggccgagccccttcgtgaaccgcgtgcgcgtggcgctgcac 204
Query: 167 ctgaagggcctggcgtacgagtacgtggaggaggacctcagcaacaagagcgcgctcctc 226
|| |||||||| | ||||||| |||||||||||||||||| ||||| ||||| | |||
Sbjct: 205 ctcaagggcctcgagtacgagaacgtggaggaggacctcaccaacaggagcgaccagctc 264
Query: 227 ctggggtccaacccggtgcacaagagcgtgccggtgctcctccacg 272
|| | |||||||| || ||||||| ||||| |||||||||||||
Sbjct: 265 ctcgcctccaaccccgtccacaagaaggtgcccgtgctcctccacg 310
>gb|CN145377.1|CN145377 WOUND1_28_C01.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_28_C01_A002 5', mRNA sequence
Length = 515
Score = 83.8 bits (42), Expect = 3e-014
Identities = 135/166 (81%)
Strand = Plus / Plus
Query: 107 ctgaaggtgctcggcgtgtggacgagcccgttcgtgatccgggtccgcatcgtgctcaac 166
|||||| |||| |||| |||| ||||||| ||||||| ||| || ||| | | ||| ||
Sbjct: 49 ctgaagctgctgggcgcgtggccgagccccttcgtgaaccgcgtgcgcgtggcgctgcac 108
Query: 167 ctgaagggcctggcgtacgagtacgtggaggaggacctcagcaacaagagcgcgctcctc 226
| |||||||| | ||||||| |||||||||||||||||| ||||||||||| | |||
Sbjct: 109 ttcaagggcctcgagtacgagaacgtggaggaggacctcaccaacaagagcgaccagctc 168
Query: 227 ctggggtccaacccggtgcacaagagcgtgccggtgctcctccacg 272
|| | |||||||| || ||||||| ||||| |||||||||||||
Sbjct: 169 ctcgcctccaaccccgtccacaagaaggtgcccgtgctcctccacg 214
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 455 gaggaggagagggcggcggcg 475
|||||||||||||||||||||
Sbjct: 394 gaggaggagagggcggcggcg 414
>gb|CW301871.1|CW301871 104_785_11464426_148_36264_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11464426, DNA
sequence
Length = 712
Score = 77.8 bits (39), Expect = 2e-012
Identities = 75/87 (86%)
Strand = Plus / Plus
Query: 194 gaggaggacctcagcaacaagagcgcgctcctcctggggtccaacccggtgcacaagagc 253
|||||||||||| ||||||||||| ||||| || |||||||||||||||||||||
Sbjct: 119 gaggaggacctcgccaacaagagcgacctcctgctccggtccaacccggtgcacaagaag 178
Query: 254 gtgccggtgctcctccacgccggccgc 280
|||||||| ||| |||||| |||||||
Sbjct: 179 gtgccggtcctcatccacggcggccgc 205
Score = 48.1 bits (24), Expect = 0.002
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 527 tgctccagggggaggccattcttcggcggcgacgacatcgggttcgtggac 577
||||||||||||| | | |||||||||||||||| | || || ||||||||
Sbjct: 577 tgctccagggggaaggcgttcttcggcggcgacgccgtcnggatcgtggac 627
>gb|CN141311.1|CN141311 OX1_50_E02.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_50_E02_A002 5', mRNA sequence
Length = 490
Score = 77.8 bits (39), Expect = 2e-012
Identities = 84/99 (84%)
Strand = Plus / Plus
Query: 182 tacgagtacgtggaggaggacctcagcaacaagagcgcgctcctcctggggtccaacccg 241
||||||||||| |||||||||||| | |||||||| ||||| || |||||||||||
Sbjct: 152 tacgagtacgtcgaggaggacctcttcggcaagagcgacctcctgctccggtccaacccg 211
Query: 242 gtgcacaagagcgtgccggtgctcctccacgccggccgc 280
|||||||||| |||||||| ||| |||||| |||||||
Sbjct: 212 gtgcacaagaaggtgccggtcctcatccacggcggccgc 250
>gb|CW139438.1|CW139438 104_529_11135238_116_34905_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11135238, DNA
sequence
Length = 737
Score = 71.9 bits (36), Expect = 1e-010
Identities = 110/132 (83%), Gaps = 2/132 (1%)
Strand = Plus / Plus
Query: 107 ctgaaggtgctcggcgtgtggacgagcccgttcgtgatccgggtccgcatcgtgctcaac 166
|||||| |||| ||| | ||||| ||||||||||||||| ||| ||| ||| |||||||
Sbjct: 515 ctgaagctgctgggcctatggaccagcccgttcgtgatcagggcacgcctcgcgctcaac 574
Query: 167 ctgaagggcctggcgtacgagtacgtggaggagg-acctcagcaacaagagcgcgctcct 225
|| ||||||||| ||||||||||| ||||||| || |||| ||||||||| ||||||
Sbjct: 575 ctcaagggcctgagctacgagtacgtcgaggaggaacgtcag-aacaagagccagctcct 633
Query: 226 cctggggtccaa 237
||| | ||||||
Sbjct: 634 cctcgcgtccaa 645
>gb|CW168013.1|CW168013 104_577_11153917_148_36492_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11153917, DNA
sequence
Length = 635
Score = 71.9 bits (36), Expect = 1e-010
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 184 cgagtacgtggaggaggacctcagcaacaagagcgcgctcctcctggggtccaacccggt 243
||||||||| ||||||||||| | ||||||||| | |||||| || ||||||||||||
Sbjct: 237 cgagtacgtcgaggaggacctgaacaacaagagtgagctcctgctcaagtccaacccggt 296
Query: 244 gcacaagagcgtgccggtgctcctccac 271
|||||||| ||||| |||||| |||||
Sbjct: 297 gcacaagaaggtgcccgtgctcatccac 324
Score = 40.1 bits (20), Expect = 0.43
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 299 gtcatcctgcagtacatcgacgag 322
||||||||||||||| ||||||||
Sbjct: 352 gtcatcctgcagtacgtcgacgag 375
>gb|CW224877.1|CW224877 104_662_11204056_116_37206_060 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11204056, DNA
sequence
Length = 716
Score = 71.9 bits (36), Expect = 1e-010
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 184 cgagtacgtggaggaggacctcagcaacaagagcgcgctcctcctggggtccaacccggt 243
||||||||| ||||||||||| | ||||||||| | |||||| || ||||||||||||
Sbjct: 454 cgagtacgtcgaggaggacctgaacaacaagagtgagctcctgctcaagtccaacccggt 513
Query: 244 gcacaagagcgtgccggtgctcctccac 271
|||||||| ||||| |||||| |||||
Sbjct: 514 gcacaagaaggtgcccgtgctcatccac 541
Score = 40.1 bits (20), Expect = 0.43
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 299 gtcatcctgcagtacatcgacgag 322
||||||||||||||| ||||||||
Sbjct: 569 gtcatcctgcagtacgtcgacgag 592
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 424,382
Number of Sequences: 832831
Number of extensions: 424382
Number of successful extensions: 128779
Number of sequences better than 0.5: 298
Number of HSP's better than 0.5 without gapping: 281
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 127926
Number of HSP's gapped (non-prelim): 817
length of query: 1118
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1098
effective length of database: 474,703,049
effective search space: 521223947802
effective search space used: 521223947802
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)