BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2647051.2.1
(627 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG356971.1|BG356971 OV2_12_C07.g1_A002 Ovary 2 (OV2) Sor... 474 e-132
gb|CD221056.1|CD221056 CCC1_73_C09.b1_A007 Callus culture/c... 474 e-132
gb|CD429356.1|CD429356 ETH1_4_C04.b1_A002 Ethylene-treated ... 474 e-132
gb|CD463245.1|CD463245 ETH1_43_G05.b1_A002 Ethylene-treated... 474 e-132
gb|CN127104.1|CN127104 RHOH1_21_C06.b1_A002 Acid- and alkal... 474 e-132
gb|CN149667.1|CN149667 WOUND1_64_E04.b1_A002 Wounded leaves... 474 e-132
gb|AW565301.1|AW565301 LG1_342_G03.g1_A002 Light Grown 1 (L... 466 e-129
gb|CN142157.1|CN142157 WOUND1_4_E05.b1_A002 Wounded leaves ... 464 e-129
gb|CN130503.1|CN130503 RHOH1_42_A03.b1_A002 Acid- and alkal... 458 e-127
gb|CN130580.1|CN130580 RHOH1_42_A03.g1_A002 Acid- and alkal... 454 e-126
gb|CN144350.1|CN144350 WOUND1_21_D10.g1_A002 Wounded leaves... 442 e-122
gb|CN127191.1|CN127191 RHOH1_21_C06.g3_A002 Acid- and alkal... 402 e-110
gb|CW200560.1|CW200560 104_626_11184118_116_36868_093 Sorgh... 349 2e-094
gb|CW284567.1|CW284567 104_761_11409858_116_35490_071 Sorgh... 349 2e-094
gb|CD220863.1|CD220863 CCC1_72_D02.b1_A007 Callus culture/c... 331 5e-089
gb|CF429018.1|CF429018 PH1_19_D02.b1_A002 Phosphorous-defic... 327 7e-088
gb|CD430119.1|CD430119 ETH1_17_E09.b1_A002 Ethylene-treated... 317 7e-085
gb|CD463307.1|CD463307 ETH1_43_G05.g1_A002 Ethylene-treated... 301 4e-080
gb|CW043286.1|CW043286 104_278_10507859_114_30254 Sorghum m... 268 6e-070
gb|CN142236.1|CN142236 WOUND1_4_E05.g1_A002 Wounded leaves ... 268 6e-070
gb|CN133696.1|CN133696 OX1_17_F10.g1_A002 Oxidatively-stres... 264 9e-069
gb|CD221081.1|CD221081 CCC1_73_C09.g1_A007 Callus culture/c... 244 8e-063
gb|CF487755.1|CF487755 POL1_45_F01.g1_A002 Pollen Sorghum b... 244 8e-063
gb|CW247056.1|CW247056 104_708_11221593_116_35017_047 Sorgh... 230 1e-058
gb|CN133613.1|CN133613 OX1_17_F10.b1_A002 Oxidatively-stres... 222 3e-056
gb|CD462589.1|CD462589 ETH1_38_B12.g1_A002 Ethylene-treated... 212 3e-053
gb|CW323528.1|CW323528 104_817_11476678_148_35959_083 Sorgh... 167 2e-039
gb|CD430254.1|CD430254 ETH1_17_E09.g1_A002 Ethylene-treated... 161 9e-038
gb|CD429487.1|CD429487 ETH1_4_C04.g1_A002 Ethylene-treated ... 147 1e-033
gb|CD430032.1|CD430032 ETH1_13_H01.g1_A002 Ethylene-treated... 147 1e-033
gb|CW050530.1|CW050530 104_290_10514713_115_30205 Sorghum m... 129 3e-028
gb|BI075558.1|BI075558 IP1_22_A10.g1_A002 Immature pannicle... 119 3e-025
gb|CD427764.1|CD427764 ETH1_34_A03.b1_A002 Ethylene-treated... 119 3e-025
gb|CN149754.1|CN149754 WOUND1_64_E04.g1_A002 Wounded leaves... 117 1e-024
gb|CW329141.1|CW329141 104_825_11479685_148_36005_021 Sorgh... 111 8e-023
gb|CW284568.1|CW284568 104_761_11409858_148_35494_071 Sorgh... 74 2e-011
gb|CD464133.1|CD464133 ETH1_48_A05.g1_A002 Ethylene-treated... 68 1e-009
gb|CD427853.1|CD427853 ETH1_34_A03.g1_A002 Ethylene-treated... 66 4e-009
gb|BZ352329.1|BZ352329 hm91g08.g1 WGS-SbicolorF (JM107 adap... 48 0.001
gb|CW323527.1|CW323527 104_817_11476678_116_35958_083 Sorgh... 44 0.015
gb|CW349860.1|CW349860 fsbb001f010o10k0 Sorghum methylation... 44 0.015
gb|AW678191.1|AW678191 WS1_13_E09.g1_A002 Water-stressed 1 ... 44 0.015
gb|CW044577.1|CW044577 104_280_10509034_114_30269 Sorghum m... 40 0.24
gb|CW044578.1|CW044578 104_280_10509034_115_30243 Sorghum m... 40 0.24
gb|CW070492.1|CW070492 104_321_10526791_1_30090 Sorghum met... 40 0.24
gb|CW159549.1|CW159549 104_565_11149415_148_36404_084 Sorgh... 40 0.24
gb|CW174361.1|CW174361 104_586_11157362_148_36560_007 Sorgh... 40 0.24
gb|CW176701.1|CW176701 104_589_11158628_148_36680_068 Sorgh... 40 0.24
gb|CW219920.1|CW219920 104_654_11197060_148_37147_010 Sorgh... 40 0.24
gb|CW318805.1|CW318805 104_811_11474148_148_35885_046 Sorgh... 40 0.24
gb|CW370053.1|CW370053 fsbb001f044m13f0 Sorghum methylation... 40 0.24
gb|CW462731.1|CW462731 fsbb001f211a05k0 Sorghum methylation... 40 0.24
gb|CW497977.1|CW497977 fsbb001f291a02f0 Sorghum methylation... 40 0.24
gb|BF585586.1|BF585586 FM1_23_B12.b1_A003 Floral-Induced Me... 40 0.24
gb|BG273549.1|BG273549 OV2_27_A10.b1_A002 Ovary 2 (OV2) Sor... 40 0.24
gb|CD206303.1|CD206303 HS1_21_C04.g1_A012 Heat-shocked seed... 40 0.24
gb|CD213818.1|CD213818 HS1_53_A03.g1_A012 Heat-shocked seed... 40 0.24
gb|CD223073.1|CD223073 CCC1_25_F05.g1_A007 Callus culture/c... 40 0.24
gb|CD224036.1|CD224036 CCC1_31_E03.g1_A007 Callus culture/c... 40 0.24
gb|CD422957.1|CD422957 SA1_38_C03.g1_A002 Salicylic acid-tr... 40 0.24
gb|CD424128.1|CD424128 SA1_3_H03.g1_A002 Salicylic acid-tre... 40 0.24
gb|CD426015.1|CD426015 SA1_15_G03.g1_A002 Salicylic acid-tr... 40 0.24
gb|CD461691.1|CD461691 SA1_34_G10.g2_A002 Salicylic acid-tr... 40 0.24
gb|CD462181.1|CD462181 SA1_39_B10.g1_A002 Salicylic acid-tr... 40 0.24
gb|CN146339.1|CN146339 WOUND1_39_D10.g1_A002 Wounded leaves... 40 0.24
gb|CX614197.1|CX614197 GABR1_12_D05.g1_A002 GA- or brassino... 40 0.24
gb|CX617272.1|CX617272 GABR1_32_F04.g1_A002 GA- or brassino... 40 0.24
>gb|BG356971.1|BG356971 OV2_12_C07.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 516
Score = 474 bits (239), Expect = e-132
Identities = 302/323 (93%)
Strand = Plus / Plus
Query: 1 cgagggcgtcgccgtagaaaagttcagggaggtgttcaagccagagactttcgcgccggg 60
||||||||||||||| || ||||||| ||||| ||||||||| ||||| ||| |||||||
Sbjct: 122 cgagggcgtcgccgtggagaagttcaaggaggcgttcaagcccgagacgttcccgccggg 181
Query: 61 cgcctccatcctcttcacgcactcgaccgccggagtcctcaccgtcgccttctccaagga 120
|||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 182 cgcctccatccttttcacgcactcgtccaccggagtcctcaccgtcgccttctccaagga 241
Query: 121 ctcgtcggtgccggcggccggcggcgtggcgatcgagaacaagcgcctctgcgaggccgt 180
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 242 ctcgtcggtgccggcgtccggcggcgtggcgatcgagaacaagcacctctgcgaggccgt 301
Query: 181 gctggagtccatcatcggggagcgcggcgtgtcgccggccgcgaagctgagcctcgccgc 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 302 gctggagtccatcatcggggagcacggcgtgtcgccggccgcgaagctgagcctcgcggc 361
Query: 241 gagggtgtcggagctcctcgccaaggagaccgccgcgcccgccgacgcgccgcaggcgga 300
||||||||||||||||||| |||||| ||||||| | ||||||||||||||||||||||
Sbjct: 362 gagggtgtcggagctcctcaccaagggaaccgccggggccgccgacgcgccgcaggcgga 421
Query: 301 gcccgtctccatcaccgcctgag 323
||||||||| ||||||||||||
Sbjct: 422 gcccgtctcggtcaccgcctgag 444
>gb|CD221056.1|CD221056 CCC1_73_C09.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_73_C09_A007 3', mRNA sequence
Length = 613
Score = 474 bits (239), Expect = e-132
Identities = 302/323 (93%)
Strand = Plus / Plus
Query: 1 cgagggcgtcgccgtagaaaagttcagggaggtgttcaagccagagactttcgcgccggg 60
||||||||||||||| || ||||||| ||||| ||||||||| ||||| ||| |||||||
Sbjct: 76 cgagggcgtcgccgtggagaagttcaaggaggcgttcaagcccgagacgttcccgccggg 135
Query: 61 cgcctccatcctcttcacgcactcgaccgccggagtcctcaccgtcgccttctccaagga 120
|||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 136 cgcctccatccttttcacgcactcgtccaccggagtcctcaccgtcgccttctccaagga 195
Query: 121 ctcgtcggtgccggcggccggcggcgtggcgatcgagaacaagcgcctctgcgaggccgt 180
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 196 ctcgtcggtgccggcgtccggcggcgtggcgatcgagaacaagcacctctgcgaggccgt 255
Query: 181 gctggagtccatcatcggggagcgcggcgtgtcgccggccgcgaagctgagcctcgccgc 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 256 gctggagtccatcatcggggagcacggcgtgtcgccggccgcgaagctgagcctcgcggc 315
Query: 241 gagggtgtcggagctcctcgccaaggagaccgccgcgcccgccgacgcgccgcaggcgga 300
||||||||||||||||||| |||||| ||||||| | ||||||||||||||||||||||
Sbjct: 316 gagggtgtcggagctcctcaccaagggaaccgccggggccgccgacgcgccgcaggcgga 375
Query: 301 gcccgtctccatcaccgcctgag 323
||||||||| ||||||||||||
Sbjct: 376 gcccgtctcggtcaccgcctgag 398
Score = 42.1 bits (21), Expect = 0.060
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 557 ctgggtaacatttgaataaaa 577
|||||||||||||||||||||
Sbjct: 592 ctgggtaacatttgaataaaa 612
>gb|CD429356.1|CD429356 ETH1_4_C04.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_4_C04_A002 3', mRNA sequence
Length = 642
Score = 474 bits (239), Expect = e-132
Identities = 302/323 (93%)
Strand = Plus / Plus
Query: 1 cgagggcgtcgccgtagaaaagttcagggaggtgttcaagccagagactttcgcgccggg 60
||||||||||||||| || ||||||| ||||| ||||||||| ||||| ||| |||||||
Sbjct: 84 cgagggcgtcgccgtggagaagttcaaggaggcgttcaagcccgagacgttcccgccggg 143
Query: 61 cgcctccatcctcttcacgcactcgaccgccggagtcctcaccgtcgccttctccaagga 120
|||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 144 cgcctccatccttttcacgcactcgtccaccggagtcctcaccgtcgccttctccaagga 203
Query: 121 ctcgtcggtgccggcggccggcggcgtggcgatcgagaacaagcgcctctgcgaggccgt 180
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 204 ctcgtcggtgccggcgtccggcggcgtggcgatcgagaacaagcacctctgcgaggccgt 263
Query: 181 gctggagtccatcatcggggagcgcggcgtgtcgccggccgcgaagctgagcctcgccgc 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 264 gctggagtccatcatcggggagcacggcgtgtcgccggccgcgaagctgagcctcgcggc 323
Query: 241 gagggtgtcggagctcctcgccaaggagaccgccgcgcccgccgacgcgccgcaggcgga 300
||||||||||||||||||| |||||| ||||||| | ||||||||||||||||||||||
Sbjct: 324 gagggtgtcggagctcctcaccaagggaaccgccggggccgccgacgcgccgcaggcgga 383
Query: 301 gcccgtctccatcaccgcctgag 323
||||||||| ||||||||||||
Sbjct: 384 gcccgtctcggtcaccgcctgag 406
Score = 42.1 bits (21), Expect = 0.060
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 557 ctgggtaacatttgaataaaa 577
|||||||||||||||||||||
Sbjct: 600 ctgggtaacatttgaataaaa 620
>gb|CD463245.1|CD463245 ETH1_43_G05.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_43_G05_A002 3', mRNA sequence
Length = 686
Score = 474 bits (239), Expect = e-132
Identities = 302/323 (93%)
Strand = Plus / Plus
Query: 1 cgagggcgtcgccgtagaaaagttcagggaggtgttcaagccagagactttcgcgccggg 60
||||||||||||||| || ||||||| ||||| ||||||||| ||||| ||| |||||||
Sbjct: 130 cgagggcgtcgccgtggagaagttcaaggaggcgttcaagcccgagacgttcccgccggg 189
Query: 61 cgcctccatcctcttcacgcactcgaccgccggagtcctcaccgtcgccttctccaagga 120
|||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 190 cgcctccatccttttcacgcactcgtccaccggagtcctcaccgtcgccttctccaagga 249
Query: 121 ctcgtcggtgccggcggccggcggcgtggcgatcgagaacaagcgcctctgcgaggccgt 180
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 250 ctcgtcggtgccggcgtccggcggcgtggcgatcgagaacaagcacctctgcgaggccgt 309
Query: 181 gctggagtccatcatcggggagcgcggcgtgtcgccggccgcgaagctgagcctcgccgc 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 310 gctggagtccatcatcggggagcacggcgtgtcgccggccgcgaagctgagcctcgcggc 369
Query: 241 gagggtgtcggagctcctcgccaaggagaccgccgcgcccgccgacgcgccgcaggcgga 300
||||||||||||||||||| |||||| ||||||| | ||||||||||||||||||||||
Sbjct: 370 gagggtgtcggagctcctcaccaagggaaccgccggggccgccgacgcgccgcaggcgga 429
Query: 301 gcccgtctccatcaccgcctgag 323
||||||||| ||||||||||||
Sbjct: 430 gcccgtctcggtcaccgcctgag 452
Score = 44.1 bits (22), Expect = 0.015
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 557 ctgggtaacatttgaataaaacaagcggat 586
||||||||||||||||||||| | ||||||
Sbjct: 646 ctgggtaacatttgaataaaaaacgcggat 675
>gb|CN127104.1|CN127104 RHOH1_21_C06.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_21_C06_A002 3', mRNA sequence
Length = 833
Score = 474 bits (239), Expect = e-132
Identities = 302/323 (93%)
Strand = Plus / Plus
Query: 1 cgagggcgtcgccgtagaaaagttcagggaggtgttcaagccagagactttcgcgccggg 60
||||||||||||||| || ||||||| ||||| ||||||||| ||||| ||| |||||||
Sbjct: 288 cgagggcgtcgccgtggagaagttcaaggaggcgttcaagcccgagacgttcccgccggg 347
Query: 61 cgcctccatcctcttcacgcactcgaccgccggagtcctcaccgtcgccttctccaagga 120
|||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 348 cgcctccatccttttcacgcactcgtccaccggagtcctcaccgtcgccttctccaagga 407
Query: 121 ctcgtcggtgccggcggccggcggcgtggcgatcgagaacaagcgcctctgcgaggccgt 180
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 408 ctcgtcggtgccggcgtccggcggcgtggcgatcgagaacaagcacctctgcgaggccgt 467
Query: 181 gctggagtccatcatcggggagcgcggcgtgtcgccggccgcgaagctgagcctcgccgc 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 468 gctggagtccatcatcggggagcacggcgtgtcgccggccgcgaagctgagcctcgcggc 527
Query: 241 gagggtgtcggagctcctcgccaaggagaccgccgcgcccgccgacgcgccgcaggcgga 300
||||||||||||||||||| |||||| ||||||| | ||||||||||||||||||||||
Sbjct: 528 gagggtgtcggagctcctcaccaagggaaccgccggggccgccgacgcgccgcaggcgga 587
Query: 301 gcccgtctccatcaccgcctgag 323
||||||||| ||||||||||||
Sbjct: 588 gcccgtctcggtcaccgcctgag 610
>gb|CN149667.1|CN149667 WOUND1_64_E04.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_64_E04_A002 3', mRNA sequence
Length = 754
Score = 474 bits (239), Expect = e-132
Identities = 302/323 (93%)
Strand = Plus / Plus
Query: 1 cgagggcgtcgccgtagaaaagttcagggaggtgttcaagccagagactttcgcgccggg 60
||||||||||||||| || ||||||| ||||| ||||||||| ||||| ||| |||||||
Sbjct: 113 cgagggcgtcgccgtggagaagttcaaggaggcgttcaagcccgagacgttcccgccggg 172
Query: 61 cgcctccatcctcttcacgcactcgaccgccggagtcctcaccgtcgccttctccaagga 120
|||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 173 cgcctccatccttttcacgcactcgtccaccggagtcctcaccgtcgccttctccaagga 232
Query: 121 ctcgtcggtgccggcggccggcggcgtggcgatcgagaacaagcgcctctgcgaggccgt 180
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 233 ctcgtcggtgccggcgtccggcggcgtggcgatcgagaacaagcacctctgcgaggccgt 292
Query: 181 gctggagtccatcatcggggagcgcggcgtgtcgccggccgcgaagctgagcctcgccgc 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 293 gctggagtccatcatcggggagcacggcgtgtcgccggccgcgaagctgagcctcgcggc 352
Query: 241 gagggtgtcggagctcctcgccaaggagaccgccgcgcccgccgacgcgccgcaggcgga 300
||||||||||||||||||| |||||| ||||||| | ||||||||||||||||||||||
Sbjct: 353 gagggtgtcggagctcctcaccaagggaaccgccggggccgccgacgcgccgcaggcgga 412
Query: 301 gcccgtctccatcaccgcctgag 323
||||||||| ||||||||||||
Sbjct: 413 gcccgtctcggtcaccgcctgag 435
Score = 42.1 bits (21), Expect = 0.060
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 557 ctgggtaacatttgaataaaa 577
|||||||||||||||||||||
Sbjct: 629 ctgggtaacatttgaataaaa 649
>gb|AW565301.1|AW565301 LG1_342_G03.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 661
Score = 466 bits (235), Expect = e-129
Identities = 301/323 (93%)
Strand = Plus / Plus
Query: 1 cgagggcgtcgccgtagaaaagttcagggaggtgttcaagccagagactttcgcgccggg 60
||||||||||||||| || ||||||| ||||| ||||||||| ||||| ||| |||||||
Sbjct: 104 cgagggcgtcgccgtggagaagttcaaggaggcgttcaagcccgagacgttcccgccggg 163
Query: 61 cgcctccatcctcttcacgcactcgaccgccggagtcctcaccgtcgccttctccaagga 120
|||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 164 cgcctccatccttttcacgcactcgtccaccggagtcctcaccgtcgccttctccaagga 223
Query: 121 ctcgtcggtgccggcggccggcggcgtggcgatcgagaacaagcgcctctgcgaggccgt 180
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 224 ctcgtcggtgccggcgtccggcggcgtggcgatcgagaacaagcacctctgcgaggccgt 283
Query: 181 gctggagtccatcatcggggagcgcggcgtgtcgccggccgcgaagctgagcctcgccgc 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||
Sbjct: 284 gctggagtccatcatcggggagcacggcgtgtcgccggccgcgaagctgagcctcccggc 343
Query: 241 gagggtgtcggagctcctcgccaaggagaccgccgcgcccgccgacgcgccgcaggcgga 300
||||||||||||||||||| |||||| ||||||| | ||||||||||||||||||||||
Sbjct: 344 gagggtgtcggagctcctcaccaagggaaccgccggggccgccgacgcgccgcaggcgga 403
Query: 301 gcccgtctccatcaccgcctgag 323
||||||||| ||||||||||||
Sbjct: 404 gcccgtctcggtcaccgcctgag 426
Score = 42.1 bits (21), Expect = 0.060
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 557 ctgggtaacatttgaataaaa 577
|||||||||||||||||||||
Sbjct: 620 ctgggtaacatttgaataaaa 640
>gb|CN142157.1|CN142157 WOUND1_4_E05.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_4_E05_A002 3', mRNA sequence
Length = 556
Score = 464 bits (234), Expect = e-129
Identities = 300/322 (93%)
Strand = Plus / Plus
Query: 2 gagggcgtcgccgtagaaaagttcagggaggtgttcaagccagagactttcgcgccgggc 61
|||||||||||||| || ||||||| ||||| ||||||||| ||||| ||| ||||||||
Sbjct: 1 gagggcgtcgccgtggagaagttcaaggaggcgttcaagcccgagacgttcccgccgggc 60
Query: 62 gcctccatcctcttcacgcactcgaccgccggagtcctcaccgtcgccttctccaaggac 121
||||||||||| |||||||||||| || ||||||||||||||||||||||||| ||||||
Sbjct: 61 gcctccatccttttcacgcactcgtccaccggagtcctcaccgtcgccttctctaaggac 120
Query: 122 tcgtcggtgccggcggccggcggcgtggcgatcgagaacaagcgcctctgcgaggccgtg 181
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 121 tcgtcggtgccggcgtccggcggcgtggcgatcgagaacaagcacctctgcgaggccgtg 180
Query: 182 ctggagtccatcatcggggagcgcggcgtgtcgccggccgcgaagctgagcctcgccgcg 241
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 181 ctggagtccatcatcggggagcacggcgtgtcgccggccgcgaagctgagcctcgcggcg 240
Query: 242 agggtgtcggagctcctcgccaaggagaccgccgcgcccgccgacgcgccgcaggcggag 301
|||||||||||||||||| |||||| ||||||| | |||||||||||||||||||||||
Sbjct: 241 agggtgtcggagctcctcaccaagggaaccgccggggccgccgacgcgccgcaggcggag 300
Query: 302 cccgtctccatcaccgcctgag 323
|||||||| ||||||||||||
Sbjct: 301 cccgtctcggtcaccgcctgag 322
Score = 44.1 bits (22), Expect = 0.015
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 557 ctgggtaacatttgaataaaacaagcggat 586
||||||||||||||||||||| | ||||||
Sbjct: 516 ctgggtaacatttgaataaaaaacgcggat 545
>gb|CN130503.1|CN130503 RHOH1_42_A03.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_42_A03_A002 3', mRNA sequence
Length = 808
Score = 458 bits (231), Expect = e-127
Identities = 300/323 (92%)
Strand = Plus / Plus
Query: 1 cgagggcgtcgccgtagaaaagttcagggaggtgttcaagccagagactttcgcgccggg 60
||||||||||||||| || ||||||| ||||| ||||||||| ||||| ||| |||||||
Sbjct: 247 cgagggcgtcgccgtggagaagttcaaggaggcgttcaagcccgagacgttcccgccggg 306
Query: 61 cgcctccatcctcttcacgcactcgaccgccggagtcctcaccgtcgccttctccaagga 120
|||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 307 cgcctccatccttttcacgcactcgtccaccggagtcctcaccgtcgccttctccaagga 366
Query: 121 ctcgtcggtgccggcggccggcggcgtggcgatcgagaacaagcgcctctgcgaggccgt 180
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 367 ctcgtcggtgccggcgtccggcggcgtggcgatcgagaacaagcacctctgcgaggccgt 426
Query: 181 gctggagtccatcatcggggagcgcggcgtgtcgccggccgcgaagctgagcctcgccgc 240
||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||| ||
Sbjct: 427 gctggagtccatcatcggggagcacggcgtgtccccggccgcgaagttgagcctcgcggc 486
Query: 241 gagggtgtcggagctcctcgccaaggagaccgccgcgcccgccgacgcgccgcaggcgga 300
||||||||||||||||||| |||||| ||||||| | ||||||||||||||||||||||
Sbjct: 487 gagggtgtcggagctcctcaccaagggaaccgccggggccgccgacgcgccgcaggcgga 546
Query: 301 gcccgtctccatcaccgcctgag 323
||||||||| ||||||||||||
Sbjct: 547 gcccgtctcggtcaccgcctgag 569
>gb|CN130580.1|CN130580 RHOH1_42_A03.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_42_A03_A002 5', mRNA sequence
Length = 756
Score = 454 bits (229), Expect = e-126
Identities = 289/309 (93%)
Strand = Plus / Plus
Query: 1 cgagggcgtcgccgtagaaaagttcagggaggtgttcaagccagagactttcgcgccggg 60
||||||||||||||| || ||||||| ||||| ||||||||| ||||| ||| |||||||
Sbjct: 447 cgagggcgtcgccgtggagaagttcaaggaggcgttcaagcccgagacgttcccgccggg 506
Query: 61 cgcctccatcctcttcacgcactcgaccgccggagtcctcaccgtcgccttctccaagga 120
|||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 507 cgcctccatccttttcacgcactcgtccaccggagtcctcaccgtcgccttctccaagga 566
Query: 121 ctcgtcggtgccggcggccggcggcgtggcgatcgagaacaagcgcctctgcgaggccgt 180
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 567 ctcgtcggtgccggcgtccggcggcgtggcgatcgagaacaagcacctctgcgaggccgt 626
Query: 181 gctggagtccatcatcggggagcgcggcgtgtcgccggccgcgaagctgagcctcgccgc 240
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||
Sbjct: 627 gctggagtccatcatcggggagcacggcgtgtcgccggccgcgaagctgatcctcgcggc 686
Query: 241 gagggtgtcggagctcctcgccaaggagaccgccgcgcccgccgacgcgccgcaggcgga 300
||||||||||||||||||| |||||| ||||||| | ||||||||||||||||||||||
Sbjct: 687 gagggtgtcggagctcctcaccaagggaaccgccggggccgccgacgcgccgcaggcgga 746
Query: 301 gcccgtctc 309
|||||||||
Sbjct: 747 gcccgtctc 755
>gb|CN144350.1|CN144350 WOUND1_21_D10.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_21_D10_A002 5', mRNA sequence
Length = 752
Score = 442 bits (223), Expect = e-122
Identities = 280/299 (93%)
Strand = Plus / Plus
Query: 1 cgagggcgtcgccgtagaaaagttcagggaggtgttcaagccagagactttcgcgccggg 60
||||||||||||||| || ||||||| ||||| ||||||||| ||||| ||| |||||||
Sbjct: 454 cgagggcgtcgccgtggagaagttcaaggaggcgttcaagcccgagacgttcccgccggg 513
Query: 61 cgcctccatcctcttcacgcactcgaccgccggagtcctcaccgtcgccttctccaagga 120
|||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 514 cgcctccatccttttcacgcactcgtccaccggagtcctcaccgtcgccttctccaagga 573
Query: 121 ctcgtcggtgccggcggccggcggcgtggcgatcgagaacaagcgcctctgcgaggccgt 180
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 574 ctcgtcggtgccggcgtccggcggcgtggcgatcgagaacaagcacctctgcgaggccgt 633
Query: 181 gctggagtccatcatcggggagcgcggcgtgtcgccggccgcgaagctgagcctcgccgc 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 634 gctggagtccatcatcggggagcacggcgtgtcgccggccgcgaagctgagcctcgcggc 693
Query: 241 gagggtgtcggagctcctcgccaaggagaccgccgcgcccgccgacgcgccgcaggcgg 299
||||||||||||||||||| |||||| ||||||| | |||||||||||||||||||||
Sbjct: 694 gagggtgtcggagctcctcaccaagggaaccgccggggccgccgacgcgccgcaggcgg 752
>gb|CN127191.1|CN127191 RHOH1_21_C06.g3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_21_C06_A002 5', mRNA sequence
Length = 806
Score = 402 bits (203), Expect = e-110
Identities = 257/275 (93%)
Strand = Plus / Plus
Query: 1 cgagggcgtcgccgtagaaaagttcagggaggtgttcaagccagagactttcgcgccggg 60
||||||||||||||| || ||||||| ||||| ||||||||| ||||| ||| |||||||
Sbjct: 525 cgagggcgtcgccgtggagaagttcaaggaggcgttcaagcccgagacgttcccgccggg 584
Query: 61 cgcctccatcctcttcacgcactcgaccgccggagtcctcaccgtcgccttctccaagga 120
|||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 585 cgcctccatccttttcacgcactcgtccaccggagtcctcaccgtcgccttctccaagga 644
Query: 121 ctcgtcggtgccggcggccggcggcgtggcgatcgagaacaagcgcctctgcgaggccgt 180
|||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 645 ctcgtcggtgccggcgtccggcggcgtggcgatcgagaacaagcacctctgcaaggccgt 704
Query: 181 gctggagtccatcatcggggagcgcggcgtgtcgccggccgcgaagctgagcctcgccgc 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 705 gctggagtccatcatcggggagcacggcgtgtcgccggccgcgaagctgagcctcgcggc 764
Query: 241 gagggtgtcggagctcctcgccaaggagaccgccg 275
||||||||||||||||||| |||||| |||||||
Sbjct: 765 gagggtgtcggagctcctcaccaagggaaccgccg 799
>gb|CW200560.1|CW200560 104_626_11184118_116_36868_093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11184118, DNA
sequence
Length = 671
Score = 349 bits (176), Expect = 2e-094
Identities = 209/220 (95%)
Strand = Plus / Plus
Query: 104 gtcgccttctccaaggactcgtcggtgccggcggccggcggcgtggcgatcgagaacaag 163
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 92 gtcgccttctccaaggactcgtcggtgccggcgtccggcggcgtggcgatcgagaacaag 151
Query: 164 cgcctctgcgaggccgtgctggagtccatcatcggggagcgcggcgtgtcgccggccgcg 223
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 152 cacctctgcgaggccgtgctggagtccatcatcggggagcacggcgtgtcgccggccgcg 211
Query: 224 aagctgagcctcgccgcgagggtgtcggagctcctcgccaaggagaccgccgcgcccgcc 283
|||||||||||||| ||||||||||||||||||||| |||||| ||||||| | |||||
Sbjct: 212 aagctgagcctcgcggcgagggtgtcggagctcctcaccaagggaaccgccggggccgcc 271
Query: 284 gacgcgccgcaggcggagcccgtctccatcaccgcctgag 323
|||||||||||||||||||||||||| ||||||||||||
Sbjct: 272 gacgcgccgcaggcggagcccgtctcggtcaccgcctgag 311
Score = 44.1 bits (22), Expect = 0.015
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 557 ctgggtaacatttgaataaaacaagcggat 586
||||||||||||||||||||| | ||||||
Sbjct: 505 ctgggtaacatttgaataaaaaacgcggat 534
>gb|CW284567.1|CW284567 104_761_11409858_116_35490_071 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11409858, DNA
sequence
Length = 677
Score = 349 bits (176), Expect = 2e-094
Identities = 209/220 (95%)
Strand = Plus / Plus
Query: 104 gtcgccttctccaaggactcgtcggtgccggcggccggcggcgtggcgatcgagaacaag 163
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 50 gtcgccttctccaaggactcgtcggtgccggcgtccggcggcgtggcgatcgagaacaag 109
Query: 164 cgcctctgcgaggccgtgctggagtccatcatcggggagcgcggcgtgtcgccggccgcg 223
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 110 cacctctgcgaggccgtgctggagtccatcatcggggagcacggcgtgtcgccggccgcg 169
Query: 224 aagctgagcctcgccgcgagggtgtcggagctcctcgccaaggagaccgccgcgcccgcc 283
|||||||||||||| ||||||||||||||||||||| |||||| ||||||| | |||||
Sbjct: 170 aagctgagcctcgcggcgagggtgtcggagctcctcaccaagggaaccgccggggccgcc 229
Query: 284 gacgcgccgcaggcggagcccgtctccatcaccgcctgag 323
|||||||||||||||||||||||||| ||||||||||||
Sbjct: 230 gacgcgccgcaggcggagcccgtctcggtcaccgcctgag 269
Score = 44.1 bits (22), Expect = 0.015
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 557 ctgggtaacatttgaataaaacaagcggat 586
||||||||||||||||||||| | ||||||
Sbjct: 463 ctgggtaacatttgaataaaaaacgcggat 492
>gb|CD220863.1|CD220863 CCC1_72_D02.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_72_D02_A007 3', mRNA sequence
Length = 445
Score = 331 bits (167), Expect = 5e-089
Identities = 200/211 (94%)
Strand = Plus / Plus
Query: 113 tccaaggactcgtcggtgccggcggccggcggcgtggcgatcgagaacaagcgcctctgc 172
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 1 tccaaggactcgtcggtgccggcgtccggcggcgtggcgatcgagaacaagcacctctgc 60
Query: 173 gaggccgtgctggagtccatcatcggggagcgcggcgtgtcgccggccgcgaagctgagc 232
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 61 gaggccgtgctggagtccatcatcggggagcacggcgtgtcgccggccgcgaagctgagc 120
Query: 233 ctcgccgcgagggtgtcggagctcctcgccaaggagaccgccgcgcccgccgacgcgccg 292
||||| ||||||||||||||||||||| |||||| ||||||| | ||||||||||||||
Sbjct: 121 ctcgcggcgagggtgtcggagctcctcaccaagggaaccgccggggccgccgacgcgccg 180
Query: 293 caggcggagcccgtctccatcaccgcctgag 323
||||||||||||||||| ||||||||||||
Sbjct: 181 caggcggagcccgtctcggtcaccgcctgag 211
Score = 44.1 bits (22), Expect = 0.015
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 557 ctgggtaacatttgaataaaacaagcggat 586
||||||||||||||||||||| | ||||||
Sbjct: 405 ctgggtaacatttgaataaaaaacgcggat 434
>gb|CF429018.1|CF429018 PH1_19_D02.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_19_D02_A002 3', mRNA sequence
Length = 447
Score = 327 bits (165), Expect = 7e-088
Identities = 201/213 (94%)
Strand = Plus / Plus
Query: 111 tctccaaggactcgtcggtgccggcggccggcggcgtggcgatcgagaacaagcgcctct 170
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 1 tctccaaggactcgtcggtgccggcgtccggcggcgtggcgatcgagaacaagcacctct 60
Query: 171 gcgaggccgtgctggagtccatcatcggggagcgcggcgtgtcgccggccgcgaagctga 230
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 61 gcgaggccgtgctggagtccatcatcggggagcacggcgtgtcgccggccgcgaagctga 120
Query: 231 gcctcgccgcgagggtgtcggagctcctcgccaaggagaccgccgcgcccgccgacgcgc 290
|||||| ||||||||||||||||||||| |||||| ||||||| | ||||||||||||
Sbjct: 121 ccctcgcggcgagggtgtcggagctcctcaccaagggaaccgccggggccgccgacgcgc 180
Query: 291 cgcaggcggagcccgtctccatcaccgcctgag 323
||||||||||||||||||| ||||||||||||
Sbjct: 181 cgcaggcggagcccgtctcggtcaccgcctgag 213
Score = 44.1 bits (22), Expect = 0.015
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 557 ctgggtaacatttgaataaaacaagcggat 586
||||||||||||||||||||| | ||||||
Sbjct: 407 ctgggtaacatttgaataaaaaacgcggat 436
>gb|CD430119.1|CD430119 ETH1_17_E09.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_17_E09_A002 3', mRNA sequence
Length = 587
Score = 317 bits (160), Expect = 7e-085
Identities = 193/204 (94%)
Strand = Plus / Plus
Query: 120 actcgtcggtgccggcggccggcggcgtggcgatcgagaacaagcgcctctgcgaggccg 179
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 163 actcgtcggtgccggcgtccggcggcgtggcgatcgagaacaagcacctctgcgaggccg 222
Query: 180 tgctggagtccatcatcggggagcgcggcgtgtcgccggccgcgaagctgagcctcgccg 239
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 223 tgctggagtccatcatcggggagcacggcgtgtcgccggccgcgaagctgagcctcgcgg 282
Query: 240 cgagggtgtcggagctcctcgccaaggagaccgccgcgcccgccgacgcgccgcaggcgg 299
|||||||||||||||||||| |||||| ||||||| | |||||||||||||||||||||
Sbjct: 283 cgagggtgtcggagctcctcaccaagggaaccgccggggccgccgacgcgccgcaggcgg 342
Query: 300 agcccgtctccatcaccgcctgag 323
|||||||||| ||||||||||||
Sbjct: 343 agcccgtctcggtcaccgcctgag 366
Score = 105 bits (53), Expect = 5e-021
Identities = 77/85 (90%)
Strand = Plus / Plus
Query: 1 cgagggcgtcgccgtagaaaagttcagggaggtgttcaagccagagactttcgcgccggg 60
||||||||||||||| || ||||||| ||||| ||||||||| ||||| ||| |||||||
Sbjct: 83 cgagggcgtcgccgtggagaagttcaaggaggcgttcaagcccgagacgttcccgccggg 142
Query: 61 cgcctccatcctcttcacgcactcg 85
|||||||||||| ||||||||||||
Sbjct: 143 cgcctccatccttttcacgcactcg 167
>gb|CD463307.1|CD463307 ETH1_43_G05.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_43_G05_A002 5', mRNA sequence
Length = 655
Score = 301 bits (152), Expect = 4e-080
Identities = 188/200 (94%)
Strand = Plus / Plus
Query: 1 cgagggcgtcgccgtagaaaagttcagggaggtgttcaagccagagactttcgcgccggg 60
||||||||||||||| || ||||||| ||||| ||||||||| ||||| ||| |||||||
Sbjct: 456 cgagggcgtcgccgtggagaagttcaaggaggcgttcaagcccgagacgttcccgccggg 515
Query: 61 cgcctccatcctcttcacgcactcgaccgccggagtcctcaccgtcgccttctccaagga 120
|||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 516 cgcctccatccttttcacgcactcgtccaccggagtcctcaccgtcgccttctccaagga 575
Query: 121 ctcgtcggtgccggcggccggcggcgtggcgatcgagaacaagcgcctctgcgaggccgt 180
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 576 ctcgtcggtgccggcgtccggcggcgtggcgatcgagaacaagcacctctgcgaggccgt 635
Query: 181 gctggagtccatcatcgggg 200
||||||||||||||||||||
Sbjct: 636 gctggagtccatcatcgggg 655
>gb|CW043286.1|CW043286 104_278_10507859_114_30254 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10507859, DNA
sequence
Length = 454
Score = 268 bits (135), Expect = 6e-070
Identities = 172/183 (93%), Gaps = 1/183 (0%)
Strand = Plus / Plus
Query: 104 gtcgccttctccaaggactcgtcggtgccggcggccggcggcgtggcgatcgagaacaag 163
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 272 gtcgccttctccaaggactcgtcggtgccggcgtccggcggcgtggcgatcgagaacaag 331
Query: 164 cgcctctgcgaggccgtgctggagtccatcatcggggagcgcggcgtgtcg-ccggccgc 222
| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 332 cacctctgcgaggccgtgctggagtccatcatcggggagcacggcgtgtcgcccggccgc 391
Query: 223 gaagctgagcctcgccgcgagggtgtcggagctcctcgccaaggagaccgccgcgcccgc 282
||||||||||||| | ||||||||||||||||||||| |||||| ||||||| | ||||
Sbjct: 392 gaagctgagcctcccggcgagggtgtcggagctcctcaccaagggaaccgccggggccgc 451
Query: 283 cga 285
|||
Sbjct: 452 cga 454
Score = 129 bits (65), Expect = 3e-028
Identities = 95/105 (90%)
Strand = Plus / Plus
Query: 1 cgagggcgtcgccgtagaaaagttcagggaggtgttcaagccagagactttcgcgccggg 60
||||||||||||||| || ||||||| ||||| ||||||||| ||||| ||| |||||||
Sbjct: 39 cgagggcgtcgccgtggagaagttcaaggaggcgttcaagcccgagacgttcccgccggg 98
Query: 61 cgcctccatcctcttcacgcactcgaccgccggagtcctcaccgt 105
|||||||||||| |||||||||||| || ||||||||||||||||
Sbjct: 99 cgcctccatccttttcacgcactcgtccaccggagtcctcaccgt 143
>gb|CN142236.1|CN142236 WOUND1_4_E05.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_4_E05_A002 5', mRNA sequence
Length = 720
Score = 268 bits (135), Expect = 6e-070
Identities = 181/195 (92%), Gaps = 1/195 (0%)
Strand = Plus / Plus
Query: 1 cgagggcgtcgccgtagaaaagttcagggaggtgttcaagccagagactttcgcgccggg 60
||||||||||||||| || ||||||| ||||| ||||||||| ||||| ||| |||||||
Sbjct: 527 cgagggcgtcgccgtggagaagttcaaggaggcgttcaagcccgagacgttcccgccggg 586
Query: 61 cgcctccatcctcttcacgcactcgaccgccggagtcctcaccgtcgccttctccaagga 120
|||||||||||| |||||||||||| || ||||||||||||||||||||||||| |||||
Sbjct: 587 cgcctccatccttttcacgcactcgtccaccggagtcctcaccgtcgccttctctaagga 646
Query: 121 ctcgtcggtgccggcggccggcggcgtggcgatcgagaacaagcgcctctgcgaggccgt 180
|||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 647 ctcgtcggtgccggcgtccggcggcgtggcgatcgagaac-agcacctctgcgaggccgt 705
Query: 181 gctggagtccatcat 195
|||||||||||||||
Sbjct: 706 gctggagtccatcat 720
>gb|CN133696.1|CN133696 OX1_17_F10.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_17_F10_A002 5', mRNA sequence
Length = 662
Score = 264 bits (133), Expect = 9e-069
Identities = 170/181 (93%), Gaps = 1/181 (0%)
Strand = Plus / Plus
Query: 20 aagttcagggaggtgttcaagccagagactttcgcgccgggcgcctccatcctcttcacg 79
||||||| ||||| ||||||||| ||||| ||| ||||||||||||||||||| ||||||
Sbjct: 483 aagttcaaggaggcgttcaagcccgagacgttcccgccgggcgcctccatccttttcacg 542
Query: 80 cactcgaccgccggagtcctcaccgtcgccttctccaaggactcgtcggtgccggcggcc 139
|||||| || ||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 543 cactcgtccaccggagtcctcaccgtcgccttctcca-ggactcgtcggtgccggcgtcc 601
Query: 140 ggcggcgtggcgatcgagaacaagcgcctctgcgaggccgtgctggagtccatcatcggg 199
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 602 ggcggcgtggcgatcgagaacaagcacctctgcgaggccgtgctggagtccatcatcggg 661
Query: 200 g 200
|
Sbjct: 662 g 662
>gb|CD221081.1|CD221081 CCC1_73_C09.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_73_C09_A007 5', mRNA sequence
Length = 632
Score = 244 bits (123), Expect = 8e-063
Identities = 159/171 (92%)
Strand = Plus / Plus
Query: 1 cgagggcgtcgccgtagaaaagttcagggaggtgttcaagccagagactttcgcgccggg 60
||||||||||||||| || ||||||| ||||| ||||||||| ||||| ||| |||||||
Sbjct: 462 cgagggcgtcgccgtggagaagttcaaggaggcgttcaagcccgagacgttcccgccggg 521
Query: 61 cgcctccatcctcttcacgcactcgaccgccggagtcctcaccgtcgccttctccaagga 120
|||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 522 cgcctccatccttttcacgcactcgtccaccggagtcctcaccgtcgccttctccaagga 581
Query: 121 ctcgtcggtgccggcggccggcggcgtggcgatcgagaacaagcgcctctg 171
|||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 582 ctcgtcggtgccggcgtccggcggcgtggcgatcgagaacaagcacctctg 632
>gb|CF487755.1|CF487755 POL1_45_F01.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_45_F01_A002 5', mRNA sequence
Length = 630
Score = 244 bits (123), Expect = 8e-063
Identities = 159/171 (92%)
Strand = Plus / Plus
Query: 1 cgagggcgtcgccgtagaaaagttcagggaggtgttcaagccagagactttcgcgccggg 60
||||||||||||||| || ||||||| ||||| ||||||||| ||||| ||| |||||||
Sbjct: 460 cgagggcgtcgccgtggagaagttcaaggaggcgttcaagcccgagacgttcccgccggg 519
Query: 61 cgcctccatcctcttcacgcactcgaccgccggagtcctcaccgtcgccttctccaagga 120
|||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 520 cgcctccatccttttcacgcactcgtccaccggagtcctcaccgtcgccttctccaagga 579
Query: 121 ctcgtcggtgccggcggccggcggcgtggcgatcgagaacaagcgcctctg 171
|||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 580 ctcgtcggtgccggcgtccggcggcgtggcgatcgagaacaagcacctctg 630
>gb|CW247056.1|CW247056 104_708_11221593_116_35017_047 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221593, DNA
sequence
Length = 586
Score = 230 bits (116), Expect = 1e-058
Identities = 194/220 (88%)
Strand = Plus / Minus
Query: 104 gtcgccttctccaaggactcgtcggtgccggcggccggcggcgtggcgatcgagaacaag 163
|||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||
Sbjct: 221 gtcgccttctccaaggactcgtcggttccggcttccggaggcgtggcgatcgagaacaag 162
Query: 164 cgcctctgcgaggccgtgctggagtccatcatcggggagcgcggcgtgtcgccggccgcg 223
| ||| | |||||||||| |||||||||||||||||||||||| | ||| ||| |||||
Sbjct: 161 cacctaggagaggccgtgcgggagtccatcatcggggagcgcggggagtcaccgtccgcg 102
Query: 224 aagctgagcctcgccgcgagggtgtcggagctcctcgccaaggagaccgccgcgcccgcc 283
||||||||||| | ||||||||||||||||||||| |||||| ||||||| | ||||
Sbjct: 101 aagctgagcctatcggcgagggtgtcggagctcctcaccaagggaaccgccgggaccgca 42
Query: 284 gacgcgccgcaggcggagcccgtctccatcaccgcctgag 323
||||||||||||||||||||||| || ||||||| ||||
Sbjct: 41 gacgcgccgcaggcggagcccgtatcggtcaccgcatgag 2
Score = 83.8 bits (42), Expect = 2e-014
Identities = 87/102 (85%)
Strand = Plus / Minus
Query: 1 cgagggcgtcgccgtagaaaagttcagggaggtgttcaagccagagactttcgcgccggg 60
||||||||| |||| || ||||||| ||||| ||||||||| ||||| ||| ||| |||
Sbjct: 454 cgagggcgtatccgtggagaagttcaaggaggcgttcaagcccgagacgttcccgcgggg 395
Query: 61 cgcctccatcctcttcacgcactcgaccgccggagtcctcac 102
|||||||||||| |||||||||| | || ||||||| |||||
Sbjct: 394 cgcctccatccttttcacgcactagtccaccggagtactcac 353
>gb|CN133613.1|CN133613 OX1_17_F10.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_17_F10_A002 3', mRNA sequence
Length = 390
Score = 222 bits (112), Expect = 3e-056
Identities = 139/148 (93%)
Strand = Plus / Plus
Query: 176 gccgtgctggagtccatcatcggggagcgcggcgtgtcgccggccgcgaagctgagcctc 235
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 gccgtgctggagtccatcatcggggagcacggcgtgtcgccggccgcgaagctgagcctc 60
Query: 236 gccgcgagggtgtcggagctcctcgccaaggagaccgccgcgcccgccgacgcgccgcag 295
|| ||||||||||||||||||||| |||||| ||||||| | |||||||||||||||||
Sbjct: 61 gcggcgagggtgtcggagctcctcaccaagggaaccgccggggccgccgacgcgccgcag 120
Query: 296 gcggagcccgtctccatcaccgcctgag 323
|||||||||||||| ||||||||||||
Sbjct: 121 gcggagcccgtctcggtcaccgcctgag 148
Score = 44.1 bits (22), Expect = 0.015
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 557 ctgggtaacatttgaataaaacaagcggat 586
||||||||||||||||||||| | ||||||
Sbjct: 342 ctgggtaacatttgaataaaaaacgcggat 371
>gb|CD462589.1|CD462589 ETH1_38_B12.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_38_B12_A002 5', mRNA sequence
Length = 624
Score = 212 bits (107), Expect = 3e-053
Identities = 156/171 (91%), Gaps = 1/171 (0%)
Strand = Plus / Plus
Query: 1 cgagggcgtcgccgtagaaaagttcagggaggtgttcaagccagagactttcgcgccggg 60
||||||||||||||| || ||||||| ||||| ||||||||| ||||| ||| |||||||
Sbjct: 455 cgagggcgtcgccgtggagaagttcaaggaggcgttcaagcccgagacgttcccgccggg 514
Query: 61 cgcctccatcctcttcacgcactcgaccgccggagtcctcaccgtcgccttctccaagga 120
|||||||||||| |||||||||||| || || | |||||||||||||||||||||||||
Sbjct: 515 cgcctccatccttttcacgcactcgtccaccagt-tcctcaccgtcgccttctccaagga 573
Query: 121 ctcgtcggtgccggcggccggcggcgtggcgatcgagaacaagcgcctctg 171
|||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 574 ctcgtcggtgccggcgtccggcggcgtggcgatcgagaacaagcacctctg 624
>gb|CW323528.1|CW323528 104_817_11476678_148_35959_083 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11476678, DNA
sequence
Length = 588
Score = 167 bits (84), Expect = 2e-039
Identities = 90/92 (97%)
Strand = Plus / Plus
Query: 104 gtcgccttctccaaggactcgtcggtgccggcggccggcggcgtggcgatcgagaacaag 163
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 497 gtcgccttctccaaggactcgtcggtgccggcgtccggcggcgtggcgatcgagaacaag 556
Query: 164 cgcctctgcgaggccgtgctggagtccatcat 195
| ||||||||||||||||||||||||||||||
Sbjct: 557 cacctctgcgaggccgtgctggagtccatcat 588
Score = 129 bits (65), Expect = 3e-028
Identities = 95/105 (90%)
Strand = Plus / Plus
Query: 1 cgagggcgtcgccgtagaaaagttcagggaggtgttcaagccagagactttcgcgccggg 60
||||||||||||||| || ||||||| ||||| ||||||||| ||||| ||| |||||||
Sbjct: 264 cgagggcgtcgccgtggagaagttcaaggaggcgttcaagcccgagacgttcccgccggg 323
Query: 61 cgcctccatcctcttcacgcactcgaccgccggagtcctcaccgt 105
|||||||||||| |||||||||||| || ||||||||||||||||
Sbjct: 324 cgcctccatccttttcacgcactcgtccaccggagtcctcaccgt 368
>gb|CD430254.1|CD430254 ETH1_17_E09.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_17_E09_A002 5', mRNA sequence
Length = 641
Score = 161 bits (81), Expect = 9e-038
Identities = 90/93 (96%)
Strand = Plus / Plus
Query: 120 actcgtcggtgccggcggccggcggcgtggcgatcgagaacaagcgcctctgcgaggccg 179
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 549 actcgtcggtgccggcgtccggcggcgtggcgatcgagaacaagcacctctgcgaggccg 608
Query: 180 tgctggagtccatcatcggggagcgcggcgtgt 212
|||||||||||||||||||||||| ||||||||
Sbjct: 609 tgctggagtccatcatcggggagcacggcgtgt 641
Score = 105 bits (53), Expect = 5e-021
Identities = 77/85 (90%)
Strand = Plus / Plus
Query: 1 cgagggcgtcgccgtagaaaagttcagggaggtgttcaagccagagactttcgcgccggg 60
||||||||||||||| || ||||||| ||||| ||||||||| ||||| ||| |||||||
Sbjct: 469 cgagggcgtcgccgtggagaagttcaaggaggcgttcaagcccgagacgttcccgccggg 528
Query: 61 cgcctccatcctcttcacgcactcg 85
|||||||||||| ||||||||||||
Sbjct: 529 cgcctccatccttttcacgcactcg 553
>gb|CD429487.1|CD429487 ETH1_4_C04.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_4_C04_A002 5', mRNA sequence
Length = 569
Score = 147 bits (74), Expect = 1e-033
Identities = 104/114 (91%)
Strand = Plus / Plus
Query: 1 cgagggcgtcgccgtagaaaagttcagggaggtgttcaagccagagactttcgcgccggg 60
||||||||||||||| || ||||||| ||||| ||||||||| ||||| ||| |||||||
Sbjct: 456 cgagggcgtcgccgtggagaagttcaaggaggcgttcaagcccgagacgttcccgccggg 515
Query: 61 cgcctccatcctcttcacgcactcgaccgccggagtcctcaccgtcgccttctc 114
|||||||||||| |||||||||||| || |||||||||||||||||||||||||
Sbjct: 516 cgcctccatccttttcacgcactcgtccaccggagtcctcaccgtcgccttctc 569
>gb|CD430032.1|CD430032 ETH1_13_H01.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_13_H01_A002 5', mRNA sequence
Length = 644
Score = 147 bits (74), Expect = 1e-033
Identities = 104/114 (91%)
Strand = Plus / Plus
Query: 1 cgagggcgtcgccgtagaaaagttcagggaggtgttcaagccagagactttcgcgccggg 60
||||||||||||||| || ||||||| ||||| ||||||||| ||||| ||| |||||||
Sbjct: 531 cgagggcgtcgccgtggagaagttcaaggaggcgttcaagcccgagacgttcccgccggg 590
Query: 61 cgcctccatcctcttcacgcactcgaccgccggagtcctcaccgtcgccttctc 114
|||||||||||| |||||||||||| || |||||||||||||||||||||||||
Sbjct: 591 cgcctccatccttttcacgcactcgtccaccggagtcctcaccgtcgccttctc 644
>gb|CW050530.1|CW050530 104_290_10514713_115_30205 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10514713, DNA
sequence
Length = 462
Score = 129 bits (65), Expect = 3e-028
Identities = 95/105 (90%)
Strand = Plus / Minus
Query: 1 cgagggcgtcgccgtagaaaagttcagggaggtgttcaagccagagactttcgcgccggg 60
||||||||||||||| || ||||||| ||||| ||||||||| ||||| ||| |||||||
Sbjct: 107 cgagggcgtcgccgtggagaagttcaaggaggcgttcaagcccgagacgttcccgccggg 48
Query: 61 cgcctccatcctcttcacgcactcgaccgccggagtcctcaccgt 105
|||||||||||| |||||||||||| || ||||||||||||||||
Sbjct: 47 cgcctccatccttttcacgcactcgtccaccggagtcctcaccgt 3
>gb|BI075558.1|BI075558 IP1_22_A10.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 335
Score = 119 bits (60), Expect = 3e-025
Identities = 84/92 (91%)
Strand = Plus / Plus
Query: 232 cctcgccgcgagggtgtcggagctcctcgccaaggagaccgccgcgcccgccgacgcgcc 291
|||||| ||||||||||||||||||||| |||||| ||||||| | |||||||||||||
Sbjct: 1 cctcgcggcgagggtgtcggagctcctcaccaagggaaccgccggggccgccgacgcgcc 60
Query: 292 gcaggcggagcccgtctccatcaccgcctgag 323
|||||||||||||||||| ||||||||||||
Sbjct: 61 gcaggcggagcccgtctcggtcaccgcctgag 92
Score = 42.1 bits (21), Expect = 0.060
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 557 ctgggtaacatttgaataaaa 577
|||||||||||||||||||||
Sbjct: 286 ctgggtaacatttgaataaaa 306
>gb|CD427764.1|CD427764 ETH1_34_A03.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_34_A03_A002 3', mRNA sequence
Length = 338
Score = 119 bits (60), Expect = 3e-025
Identities = 93/104 (89%)
Strand = Plus / Plus
Query: 220 cgcgaagctgagcctcgccgcgagggtgtcggagctcctcgccaaggagaccgccgcgcc 279
||||||||||| |||||| ||||||||||||||||||||| |||||| ||||||| | |
Sbjct: 1 cgcgaagctgaccctcgcggcgagggtgtcggagctcctccccaagggaaccgccggggc 60
Query: 280 cgccgacgcgccgcaggcggagcccgtctccatcaccgcctgag 323
||||||||||||||||||||||||||| || ||||| ||||||
Sbjct: 61 cgccgacgcgccgcaggcggagcccgtttcggtcaccccctgag 104
Score = 44.1 bits (22), Expect = 0.015
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 557 ctgggtaacatttgaataaaacaagcggat 586
||||||||||||||||||||| | ||||||
Sbjct: 298 ctgggtaacatttgaataaaaaacgcggat 327
>gb|CN149754.1|CN149754 WOUND1_64_E04.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_64_E04_A002 5', mRNA sequence
Length = 519
Score = 117 bits (59), Expect = 1e-024
Identities = 92/103 (89%)
Strand = Plus / Plus
Query: 1 cgagggcgtcgccgtagaaaagttcagggaggtgttcaagccagagactttcgcgccggg 60
||||||||||||||| || ||||||| ||||| ||||||||| ||||| ||| |||||||
Sbjct: 417 cgagggcgtcgccgtggagaagttcaaggaggcgttcaagcccgagacgttcccgccggg 476
Query: 61 cgcctccatcctcttcacgcactcgaccgccggagtcctcacc 103
||||||||||| |||||||||||| || ||||||||||||||
Sbjct: 477 agcctccatccttttcacgcactcgtccaccggagtcctcacc 519
>gb|CW329141.1|CW329141 104_825_11479685_148_36005_021 Sorghum methylation filtered
library (LibID: 104) Sorghum bicolor genomic clone
11479685, DNA sequence
Length = 625
Score = 111 bits (56), Expect = 8e-023
Identities = 86/96 (89%)
Strand = Plus / Minus
Query: 1 cgagggcgtcgccgtagaaaagttcagggaggtgttcaagccagagactttcgcgccggg 60
||||||||||||||| || ||||||| ||||| ||||||||| ||||| ||| |||||||
Sbjct: 96 cgagggcgtcgccgtggagaagttcaaggaggcgttcaagcccgagacgttcccgccggg 37
Query: 61 cgcctccatcctcttcacgcactcgaccgccggagt 96
|||||||||||| |||||||||||| || |||||||
Sbjct: 36 cgcctccatccttttcacgcactcgtccaccggagt 1
>gb|CW284568.1|CW284568 104_761_11409858_148_35494_071 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11409858, DNA
sequence
Length = 603
Score = 73.8 bits (37), Expect = 2e-011
Identities = 43/45 (95%)
Strand = Plus / Minus
Query: 279 ccgccgacgcgccgcaggcggagcccgtctccatcaccgcctgag 323
||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 600 ccgccgacgcgccgcaggcggagcccgtctcggtcaccgcctgag 556
Score = 44.1 bits (22), Expect = 0.015
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 557 ctgggtaacatttgaataaaacaagcggat 586
||||||||||||||||||||| | ||||||
Sbjct: 362 ctgggtaacatttgaataaaaaacgcggat 333
>gb|CD464133.1|CD464133 ETH1_48_A05.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_48_A05_A002 5', mRNA sequence
Length = 599
Score = 67.9 bits (34), Expect = 1e-009
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 69 tcctcttcacgcactcgaccgccggagtcctcaccgtcgccttctc 114
|||| |||||||||||| || |||||||||||||||||||||||||
Sbjct: 554 tccttttcacgcactcgtccaccggagtcctcaccgtcgccttctc 599
>gb|CD427853.1|CD427853 ETH1_34_A03.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_34_A03_A002 5', mRNA sequence
Length = 514
Score = 65.9 bits (33), Expect = 4e-009
Identities = 71/83 (85%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 1 cgagggcgtcgccgtagaa-aagttcagggaggtgttcaagccagagactttcgcgccgg 59
||||||||||||||| | | ||||||| ||||| |||| |||| | || ||| ||||||
Sbjct: 432 cgagggcgtcgccgtgggagaagttcaaggaggcgttccagcccgnnacgttcccgccgg 491
Query: 60 gcgcctccatcctcttcacgcac 82
||||||||||||| |||||||||
Sbjct: 492 gcgcctccatccttttcacgcac 514
>gb|BZ352329.1|BZ352329 hm91g08.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hm91g08 5', DNA sequence
Length = 166
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 104 gtcgccttctccaaggactcgtcg 127
||||||||||||||||||||||||
Sbjct: 24 gtcgccttctccaaggactcgtcg 1
>gb|CW323527.1|CW323527 104_817_11476678_116_35958_083 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11476678, DNA
sequence
Length = 688
Score = 44.1 bits (22), Expect = 0.015
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 557 ctgggtaacatttgaataaaacaagcggat 586
||||||||||||||||||||| | ||||||
Sbjct: 493 ctgggtaacatttgaataaaaaacgcggat 464
>gb|CW349860.1|CW349860 fsbb001f010o10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f010o10, DNA
sequence
Length = 683
Score = 44.1 bits (22), Expect = 0.015
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 123 cgtcggtgccggcggccggcgg 144
||||||||||||||||||||||
Sbjct: 285 cgtcggtgccggcggccggcgg 306
>gb|AW678191.1|AW678191 WS1_13_E09.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 617
Score = 44.1 bits (22), Expect = 0.015
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 123 cgtcggtgccggcggccggcgg 144
||||||||||||||||||||||
Sbjct: 460 cgtcggtgccggcggccggcgg 481
>gb|CW044577.1|CW044577 104_280_10509034_114_30269 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10509034, DNA
sequence
Length = 529
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 132 cggcggccggcggcgtggcg 151
||||||||||||||||||||
Sbjct: 521 cggcggccggcggcgtggcg 502
>gb|CW044578.1|CW044578 104_280_10509034_115_30243 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10509034, DNA
sequence
Length = 542
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 132 cggcggccggcggcgtggcg 151
||||||||||||||||||||
Sbjct: 409 cggcggccggcggcgtggcg 428
>gb|CW070492.1|CW070492 104_321_10526791_1_30090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10526791, DNA
sequence
Length = 567
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 127 ggtgccggcggccggcggcg 146
||||||||||||||||||||
Sbjct: 190 ggtgccggcggccggcggcg 171
>gb|CW159549.1|CW159549 104_565_11149415_148_36404_084 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149415, DNA
sequence
Length = 531
Score = 40.1 bits (20), Expect = 0.24
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 275 gcgcccgccgacgcgccgcaggcg 298
|||||||||| |||||||||||||
Sbjct: 118 gcgcccgccgccgcgccgcaggcg 141
>gb|CW174361.1|CW174361 104_586_11157362_148_36560_007 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11157362, DNA
sequence
Length = 492
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 127 ggtgccggcggccggcggcg 146
||||||||||||||||||||
Sbjct: 130 ggtgccggcggccggcggcg 149
>gb|CW176701.1|CW176701 104_589_11158628_148_36680_068 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11158628, DNA
sequence
Length = 547
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 326 gaggagcgggcgggcgggcg 345
||||||||||||||||||||
Sbjct: 184 gaggagcgggcgggcgggcg 203
>gb|CW219920.1|CW219920 104_654_11197060_148_37147_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11197060, DNA
sequence
Length = 226
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 127 ggtgccggcggccggcggcg 146
||||||||||||||||||||
Sbjct: 126 ggtgccggcggccggcggcg 107
>gb|CW318805.1|CW318805 104_811_11474148_148_35885_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11474148, DNA
sequence
Length = 677
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 326 gaggagcgggcgggcgggcg 345
||||||||||||||||||||
Sbjct: 20 gaggagcgggcgggcgggcg 39
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 224,715
Number of Sequences: 832831
Number of extensions: 224715
Number of successful extensions: 71034
Number of sequences better than 0.5: 67
Number of HSP's better than 0.5 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70863
Number of HSP's gapped (non-prelim): 166
length of query: 627
length of database: 491,359,669
effective HSP length: 19
effective length of query: 608
effective length of database: 475,535,880
effective search space: 289125815040
effective search space used: 289125815040
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)