BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2643604.2.1
(578 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW176244.1|CW176244 104_589_11158384_148_36680_062 Sorgh... 690 0.0
gb|AW678787.1|AW678787 WS1_1_H05.g1_A002 Water-stressed 1 (... 547 e-154
gb|CW105163.1|CW105163 104_474_11012772_116_34453_042 Sorgh... 54 1e-005
gb|CW403690.1|CW403690 fsbb001f095i13f0 Sorghum methylation... 54 1e-005
gb|CW403691.1|CW403691 fsbb001f095i13k0 Sorghum methylation... 54 1e-005
gb|BF422042.1|BF422042 FM1_12_C02.g1_A003 Floral-Induced Me... 54 1e-005
gb|CN147521.1|CN147521 WOUND1_50_F12.b1_A002 Wounded leaves... 54 1e-005
gb|CN147606.1|CN147606 WOUND1_50_F12.g1_A002 Wounded leaves... 54 1e-005
gb|CN149831.1|CN149831 WOUND1_65_D05.b1_A002 Wounded leaves... 54 1e-005
gb|CW430454.1|CW430454 fsbb001f144c20f0 Sorghum methylation... 44 0.014
gb|CD209113.1|CD209113 HS1_46_A12.b1_A012 Heat-shocked seed... 44 0.014
gb|CD427064.1|CD427064 SA1_17_G05.b1_A002 Salicylic acid-tr... 44 0.014
gb|CW105164.1|CW105164 104_474_11012772_148_34449_042 Sorgh... 40 0.22
>gb|CW176244.1|CW176244 104_589_11158384_148_36680_062 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11158384, DNA
sequence
Length = 724
Score = 690 bits (348), Expect = 0.0
Identities = 447/478 (93%), Gaps = 4/478 (0%)
Strand = Plus / Plus
Query: 101 actaactttcaacagaaaactgcagggaagagggactaagactactcttgctagcttatc 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19 actaactttcaacagaaaactgcagggaagagggactaagactactcttgctagcttatc 78
Query: 161 atgatatttgatatatccttgacactacaacagcgatgccactacagctacaactaaaag 220
|||||| | |||||||||||| |||||| ||| ||| ||||||||||||||||||||||
Sbjct: 79 atgatact-gatatatccttgggactacagcagtgataccactacagctacaactaaaag 137
Query: 221 agctcgaactcgatgtcgtcaccattcagccggaattccagacatttgccttcctttttc 280
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 138 agctcgaactcgatgtcgtcgccattcagccggaattccagacatttgccttcctttttc 197
Query: 281 ttgcgtgtcgttacaggtgttggtgcagtgtcaatgttcttcagggtctctggtggtgcg 340
|||||||||| | ||| || |||||| |||||||||||| ||||||||||||| ||
Sbjct: 198 ttgcgtgtcgcga---gtgctgctgcagtatcaatgttcttcggggtctctggtggcgca 254
Query: 341 gtccaccggatcaaggcccagttcaggccttcaaagaagggatgccgcttaatctcagtg 400
||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||| |
Sbjct: 255 gtccaccggatcaaggcccagtttaggccttcgaagaagggatgccgtttaatctcagcg 314
Query: 401 gctcctctcgacgagccaagccggtactctggctctttcacaagcagccctctgatcaga 460
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 315 gctcctctcgacgagccgagccggcactctggctctttcacaagcagccctctgataaga 374
Query: 461 tctcgagcgtggaagcttacagctggattatcagggaacttcaagccctgtgagatcaca 520
||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 375 tctcgtgcgtggaagcttacagctgggttgtcagggaacttcaagccctgtgagatcaca 434
Query: 521 tttgagagtgtttcctcattgccaggtcccttgaatggtgtcttgccatagagtaatt 578
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 435 tttgagagtgtttcctcattgccaggtcccttgaatggtgtcttaccgtagagtaatt 492
>gb|AW678787.1|AW678787 WS1_1_H05.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 446
Score = 547 bits (276), Expect = e-154
Identities = 401/441 (90%), Gaps = 10/441 (2%)
Strand = Plus / Minus
Query: 22 gtcttctaatatttgatggtattaacaaggcataaagttacaggcttaacagccaatctt 81
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 437 gtcttctaatatttgatggtattaacaaggcataaagttacaggctgaacagccaacctt 378
Query: 82 accttacttcccaacg------atgactaactttcaacagaaaactgcagggaagaggga 135
|||| |||||||||| | |||||||||||||| ||||||||||||||||||||
Sbjct: 377 acctcacttcccaacatccgaaacaactaactttcaacaaaaaactgcagggaagaggga 318
Query: 136 ctaagactactcttgctagcttatcatgatatttgatatatccttgacactacaacagcg 195
|||| |||||||||||||||||||||||||| | |||||||||||| |||||| ||| |
Sbjct: 317 ctaaaactactcttgctagcttatcatgatact-gatatatccttgggactacagcagtg 259
Query: 196 atgccactacagctacaactaaaagagctcgaactcgatgtcgtcaccattcagccggaa 255
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 258 ataccactacagctacaactaaaagagctcgaactcgatgtcgtcgccattcagccggaa 199
Query: 256 ttccagacatttgccttcctttttcttgcgtgtcgttacaggtgttggtgcagtgtcaat 315
||||| ||||||||||||||||||||||||||||| || ||| || |||||| |||||
Sbjct: 198 ttccaaacatttgccttcctttttcttgcgtgtcg---caagtgctgctgcagtatcaat 142
Query: 316 gttcttcagggtctctggtggtgcggtccaccggatcaaggcccagttcaggccttcaaa 375
||||||| ||||||||||||| || ||||||||||||||||||||||| |||||||||||
Sbjct: 141 gttcttcggggtctctggtggcgcagtccaccggatcaaggcccagtttaggccttcaaa 82
Query: 376 gaagggatgccgcttaatctcagtggctcctctcgacgagccaagccggtactctggctc 435
||||||||||| |||||||||| ||||||||||||| |||| |||||| ||||||||||
Sbjct: 81 aaagggatgccgtttaatctcagcggctcctctcgacaagccgagccggcactctggctc 22
Query: 436 tttcacaagcagccctctgat 456
|||||||||||||||||||||
Sbjct: 21 tttcacaagcagccctctgat 1
>gb|CW105163.1|CW105163 104_474_11012772_116_34453_042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11012772, DNA
sequence
Length = 714
Score = 54.0 bits (27), Expect = 1e-005
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 508 ctgtgagatcacatttgagagtgtttcctcattgccaggtcccttgaatggtgtcttgcc 567
|||||||| |||||||| | |||||| ||||| |||||||| |||| |||||||||||
Sbjct: 315 ctgtgagaccacatttgccaatgtttcatcattcccaggtcctctgaagggtgtcttgcc 256
Query: 568 ata 570
|||
Sbjct: 255 ata 253
>gb|CW403690.1|CW403690 fsbb001f095i13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f095i13, DNA
sequence
Length = 615
Score = 54.0 bits (27), Expect = 1e-005
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 508 ctgtgagatcacatttgagagtgtttcctcattgccaggtcccttgaatggtgtcttgcc 567
|||||||| |||||||| | |||||| ||||| |||||||| |||| |||||||||||
Sbjct: 475 ctgtgagaccacatttgccaatgtttcatcattcccaggtcctctgaagggtgtcttgcc 534
Query: 568 ata 570
|||
Sbjct: 535 ata 537
>gb|CW403691.1|CW403691 fsbb001f095i13k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f095i13, DNA
sequence
Length = 681
Score = 54.0 bits (27), Expect = 1e-005
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 508 ctgtgagatcacatttgagagtgtttcctcattgccaggtcccttgaatggtgtcttgcc 567
|||||||| |||||||| | |||||| ||||| |||||||| |||| |||||||||||
Sbjct: 461 ctgtgagaccacatttgccaatgtttcatcattcccaggtcctctgaagggtgtcttgcc 402
Query: 568 ata 570
|||
Sbjct: 401 ata 399
>gb|BF422042.1|BF422042 FM1_12_C02.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 591
Score = 54.0 bits (27), Expect = 1e-005
Identities = 168/215 (78%)
Strand = Plus / Minus
Query: 356 gcccagttcaggccttcaaagaagggatgccgcttaatctcagtggctcctctcgacgag 415
||||| |||| |||||||||||| || ||| |||| || |||| ||||||||| ||||
Sbjct: 316 gcccaattcaagccttcaaagaaagggtgctgcttgatttcagcagctcctctcaacgat 257
Query: 416 ccaagccggtactctggctctttcacaagcagccctctgatcagatctcgagcgtggaag 475
|||| | || ||| ||||| ||||| || | ||||||||||||||| |||| | |
Sbjct: 256 ccaaatctgttctcaggctccttcaccagtaaacctctgatcagatctttggcgttgctg 197
Query: 476 cttacagctggattatcagggaacttcaagccctgtgagatcacatttgagagtgtttcc 535
|| |||| |||||| || |||||| | |||||||| |||||||| | ||||||
Sbjct: 196 ctcacagatggattgtctgggaaccggagattctgtgagaccacatttgccaatgtttca 137
Query: 536 tcattgccaggtcccttgaatggtgtcttgccata 570
||||| |||||||| |||| ||||||||||||||
Sbjct: 136 tcattcccaggtcctctgaagggtgtcttgccata 102
>gb|CN147521.1|CN147521 WOUND1_50_F12.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_50_F12_A002 3', mRNA sequence
Length = 763
Score = 54.0 bits (27), Expect = 1e-005
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 508 ctgtgagatcacatttgagagtgtttcctcattgccaggtcccttgaatggtgtcttgcc 567
|||||||| |||||||| | |||||| ||||| |||||||| |||| |||||||||||
Sbjct: 254 ctgtgagaccacatttgccaatgtttcatcattcccaggtcctctgaagggtgtcttgcc 195
Query: 568 ata 570
|||
Sbjct: 194 ata 192
>gb|CN147606.1|CN147606 WOUND1_50_F12.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_50_F12_A002 5', mRNA sequence
Length = 818
Score = 54.0 bits (27), Expect = 1e-005
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 508 ctgtgagatcacatttgagagtgtttcctcattgccaggtcccttgaatggtgtcttgcc 567
|||||||| |||||||| | |||||| ||||| |||||||| |||| |||||||||||
Sbjct: 741 ctgtgagaccacatttgccaatgtttcatcattcccaggtcctctgaagggtgtcttgcc 682
Query: 568 ata 570
|||
Sbjct: 681 ata 679
>gb|CN149831.1|CN149831 WOUND1_65_D05.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_65_D05_A002 3', mRNA sequence
Length = 685
Score = 54.0 bits (27), Expect = 1e-005
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 508 ctgtgagatcacatttgagagtgtttcctcattgccaggtcccttgaatggtgtcttgcc 567
|||||||| |||||||| | |||||| ||||| |||||||| |||| |||||||||||
Sbjct: 259 ctgtgagaccacatttgccaatgtttcatcattcccaggtcctctgaagggtgtcttgcc 200
Query: 568 ata 570
|||
Sbjct: 199 ata 197
>gb|CW430454.1|CW430454 fsbb001f144c20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f144c20, DNA
sequence
Length = 611
Score = 44.1 bits (22), Expect = 0.014
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 356 gcccagttcaggccttcaaagaagggatgccgcttaatctcagtggctcc 405
|||||||||| ||| ||||||||||| ||| |||| ||||| || |||||
Sbjct: 176 gcccagttcacgccctcaaagaaggggtgctgcttgatctccgtcgctcc 127
>gb|CD209113.1|CD209113 HS1_46_A12.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_46_A12_A012 3', mRNA sequence
Length = 651
Score = 44.1 bits (22), Expect = 0.014
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 356 gcccagttcaggccttcaaagaagggatgccgcttaatctcagtggctcc 405
|||||||||| ||| ||||||||||| ||| |||| ||||| || |||||
Sbjct: 347 gcccagttcacgccctcaaagaaggggtgctgcttgatctccgtcgctcc 298
>gb|CD427064.1|CD427064 SA1_17_G05.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_17_G05_A002 3', mRNA sequence
Length = 652
Score = 44.1 bits (22), Expect = 0.014
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 356 gcccagttcaggccttcaaagaagggatgccgcttaatctcagtggctcc 405
|||||||||| ||| ||||||||||| ||| |||| ||||| || |||||
Sbjct: 232 gcccagttcacgccctcaaagaaggggtgctgcttgatctccgtcgctcc 183
>gb|CW105164.1|CW105164 104_474_11012772_148_34449_042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11012772, DNA
sequence
Length = 593
Score = 40.1 bits (20), Expect = 0.22
Identities = 77/96 (80%)
Strand = Plus / Plus
Query: 368 ccttcaaagaagggatgccgcttaatctcagtggctcctctcgacgagccaagccggtac 427
||||||||||| || ||| |||| || |||| ||||||||| |||| |||| | || |
Sbjct: 408 ccttcaaagaaagggtgctgcttgatttcagcagctcctctcaacgatccaaatctgttc 467
Query: 428 tctggctctttcacaagcagccctctgatcagatct 463
|| ||||| ||||| || | |||||||||||||||
Sbjct: 468 tcaggctccttcaccagtaaacctctgatcagatct 503
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 125,148
Number of Sequences: 832831
Number of extensions: 125148
Number of successful extensions: 35565
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35532
Number of HSP's gapped (non-prelim): 30
length of query: 578
length of database: 491,359,669
effective HSP length: 19
effective length of query: 559
effective length of database: 475,535,880
effective search space: 265824556920
effective search space used: 265824556920
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)