BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2621963.2.1
(743 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW231329.1|CW231329 104_680_11211059_116_37343_040 Sorgh... 523 e-147
gb|CW305047.1|CW305047 104_790_11466110_116_37435_059 Sorgh... 347 9e-094
gb|BF588202.1|BF588202 FM1_38_H12.b1_A003 Floral-Induced Me... 100 4e-019
gb|CL167398.1|CL167398 104_364_10810050_114_31802_114 Sorgh... 58 1e-006
gb|CD232991.1|CD232991 SS1_11_G10.b1_A012 Salt-stressed see... 58 1e-006
gb|CD428171.1|CD428171 ETH1_28_H04.b1_A002 Ethylene-treated... 58 1e-006
gb|CN131106.1|CN131106 RHOH1_46_A02.b1_A002 Acid- and alkal... 58 1e-006
gb|CN137083.1|CN137083 OX1_55_C09.b1_A002 Oxidatively-stres... 58 1e-006
gb|CN138968.1|CN138968 OX1_15_F01.b1_A002 Oxidatively-stres... 58 1e-006
gb|CN141238.1|CN141238 OX1_50_E03.b1_A002 Oxidatively-stres... 58 1e-006
gb|CN144970.1|CN144970 WOUND1_26_B08.b2_A002 Wounded leaves... 58 1e-006
gb|CN145334.1|CN145334 WOUND1_28_F11.b2_A002 Wounded leaves... 58 1e-006
gb|CN152472.1|CN152472 WOUND1_82_G01.b1_A002 Wounded leaves... 58 1e-006
gb|CX607710.1|CX607710 ANR1_30_F11.b1_A002 Anaerobic roots ... 58 1e-006
gb|CF432484.1|CF432484 NIT1_17_E06.b1_A002 Nitrogen-deficie... 54 2e-005
gb|CN124063.1|CN124063 RHOH1_2_H11.b1_A002 Acid- and alkali... 54 2e-005
gb|CW444386.1|CW444386 fsbb001f164p08f0 Sorghum methylation... 52 7e-005
gb|AW285514.1|AW285514 LG1_241_E11.g1_A002 Light Grown 1 (L... 52 7e-005
gb|AW283787.2|AW283787 LG1_255_F02.g1_A002 Light Grown 1 (L... 52 7e-005
gb|AW564740.1|AW564740 LG1_300_H05.b1_A002 Light Grown 1 (L... 52 7e-005
gb|AW565363.1|AW565363 LG1_343_C04.g1_A002 Light Grown 1 (L... 52 7e-005
gb|AW677264.1|AW677264 DG1_6_C10.g1_A002 Dark Grown 1 (DG1)... 52 7e-005
gb|AW923640.1|AW923640 DG1_56_C09.g1_A002 Dark Grown 1 (DG1... 52 7e-005
gb|BE125068.1|BE125068 DG1_15_D11.b1_A002 Dark Grown 1 (DG1... 52 7e-005
gb|BE356503.1|BE356503 DG1_125_G04.g1_A002 Dark Grown 1 (DG... 52 7e-005
gb|BE357145.1|BE357145 DG1_147_D10.b1_A002 Dark Grown 1 (DG... 52 7e-005
gb|BE357212.1|BE357212 DG1_147_D10.g1_A002 Dark Grown 1 (DG... 52 7e-005
gb|BE357294.1|BE357294 DG1_148_B12.b1_A002 Dark Grown 1 (DG... 52 7e-005
gb|BE357363.1|BE357363 DG1_148_B12.g1_A002 Dark Grown 1 (DG... 52 7e-005
gb|BE357447.1|BE357447 DG1_15_D11.b2_A002 Dark Grown 1 (DG1... 52 7e-005
gb|BE358659.1|BE358659 DG1_30_E01.g1_A002 Dark Grown 1 (DG1... 52 7e-005
gb|BE358728.1|BE358728 DG1_31_D06.g1_A002 Dark Grown 1 (DG1... 52 7e-005
gb|BE359643.1|BE359643 DG1_56_C09.b2_A002 Dark Grown 1 (DG1... 52 7e-005
gb|BE359764.1|BE359764 DG1_56_C09.g2_A002 Dark Grown 1 (DG1... 52 7e-005
gb|BE362845.1|BE362845 DG1_89_F06.g2_A002 Dark Grown 1 (DG1... 52 7e-005
gb|BG051102.1|BG051102 FM1_56_C10.b1_A003 Floral-Induced Me... 52 7e-005
gb|BG051103.1|BG051103 FM1_56_C11.b1_A003 Floral-Induced Me... 52 7e-005
gb|BG051426.1|BG051426 FM1_56_C10.g1_A003 Floral-Induced Me... 52 7e-005
gb|BG051427.1|BG051427 FM1_56_C11.g1_A003 Floral-Induced Me... 52 7e-005
gb|BG053435.1|BG053435 RHIZ2_8_G12.g1_A003 Rhizome2 (RHIZ2)... 52 7e-005
gb|BG053622.1|BG053622 RHIZ2_11_F12.g1_A003 Rhizome2 (RHIZ2... 52 7e-005
gb|BG053711.1|BG053711 RHIZ2_8_G12.b1_A003 Rhizome2 (RHIZ2)... 52 7e-005
gb|BG053923.1|BG053923 RHIZ2_11_F12.b1_A003 Rhizome2 (RHIZ2... 52 7e-005
gb|BG102016.1|BG102016 RHIZ2_23_G12.g1_A003 Rhizome2 (RHIZ2... 52 7e-005
gb|BG102051.1|BG102051 RHIZ2_24_C03.g1_A003 Rhizome2 (RHIZ2... 52 7e-005
gb|BG102239.1|BG102239 RHIZ2_23_G12.b1_A003 Rhizome2 (RHIZ2... 52 7e-005
gb|BG487884.1|BG487884 RHIZ2_60_E09.g1_A003 Rhizome2 (RHIZ2... 52 7e-005
gb|BG488183.1|BG488183 RHIZ2_60_E09.b1_A003 Rhizome2 (RHIZ2... 52 7e-005
gb|BG947206.1|BG947206 IP1_3_G08.g1_A002 Immature pannicle ... 52 7e-005
gb|CD209901.1|CD209901 HS1_55_C07.g1_A012 Heat-shocked seed... 52 7e-005
gb|CD211792.1|CD211792 HS1_64_A08.g1_A012 Heat-shocked seed... 52 7e-005
gb|CD427559.1|CD427559 SA1_37_F12.b1_A002 Salicylic acid-tr... 52 7e-005
gb|CD427650.1|CD427650 SA1_37_F04.g1_A002 Salicylic acid-tr... 52 7e-005
gb|CD429616.1|CD429616 ETH1_14_H10.g1_A002 Ethylene-treated... 52 7e-005
gb|CD429935.1|CD429935 ETH1_16_E04.g1_A002 Ethylene-treated... 52 7e-005
gb|CD431997.1|CD431997 ETH1_12_A06.b1_A002 Ethylene-treated... 52 7e-005
gb|CD432050.1|CD432050 ETH1_12_A06.g1_A002 Ethylene-treated... 52 7e-005
gb|CD432450.1|CD432450 ETH1_30_G04.b1_A002 Ethylene-treated... 52 7e-005
gb|CD432546.1|CD432546 ETH1_30_G04.g1_A002 Ethylene-treated... 52 7e-005
gb|CN133606.1|CN133606 OX1_17_F03.b1_A002 Oxidatively-stres... 52 7e-005
gb|CN133689.1|CN133689 OX1_17_F03.g1_A002 Oxidatively-stres... 52 7e-005
gb|CN133784.1|CN133784 OX1_18_G05.b1_A002 Oxidatively-stres... 52 7e-005
gb|CN133827.1|CN133827 OX1_18_C06.g1_A002 Oxidatively-stres... 52 7e-005
gb|CN133867.1|CN133867 OX1_18_G05.g1_A002 Oxidatively-stres... 52 7e-005
gb|CN134570.1|CN134570 OX1_27_E01.b1_A002 Oxidatively-stres... 52 7e-005
gb|CN134579.1|CN134579 OX1_27_E12.b1_A002 Oxidatively-stres... 52 7e-005
gb|CN134657.1|CN134657 OX1_27_E01.g1_A002 Oxidatively-stres... 52 7e-005
gb|CN134667.1|CN134667 OX1_27_E12.g1_A002 Oxidatively-stres... 52 7e-005
gb|CN134734.1|CN134734 OX1_28_D04.b1_A002 Oxidatively-stres... 52 7e-005
gb|CN134808.1|CN134808 OX1_28_D04.g1_A002 Oxidatively-stres... 52 7e-005
gb|CN135762.1|CN135762 OX1_38_G05.g1_A002 Oxidatively-stres... 52 7e-005
gb|CN137069.1|CN137069 OX1_55_B05.b1_A002 Oxidatively-stres... 52 7e-005
gb|CN137138.1|CN137138 OX1_55_A02.g1_A002 Oxidatively-stres... 52 7e-005
gb|CN137509.1|CN137509 OX1_57_F06.g1_A002 Oxidatively-stres... 52 7e-005
gb|CN138444.1|CN138444 OX1_63_G06.g1_A002 Oxidatively-stres... 52 7e-005
gb|CN140188.1|CN140188 OX1_34_D03.g1_A002 Oxidatively-stres... 52 7e-005
gb|CN140601.1|CN140601 OX1_45_A07.g1_A002 Oxidatively-stres... 52 7e-005
gb|CN141004.1|CN141004 OX1_48_F02.g1_A002 Oxidatively-stres... 52 7e-005
gb|CN141374.1|CN141374 OX1_51_D04.b1_A002 Oxidatively-stres... 52 7e-005
gb|CN144674.1|CN144674 WOUND1_23_F12.g1_A002 Wounded leaves... 52 7e-005
gb|CN147763.1|CN147763 WOUND1_51_H11.g1_A002 Wounded leaves... 52 7e-005
gb|CN148443.1|CN148443 WOUND1_56_C03.g1_A002 Wounded leaves... 52 7e-005
gb|CN149632.1|CN149632 WOUND1_64_A10.b1_A002 Wounded leaves... 52 7e-005
gb|CN149714.1|CN149714 WOUND1_64_A10.g1_A002 Wounded leaves... 52 7e-005
gb|CN150451.1|CN150451 WOUND1_69_F06.b1_A002 Wounded leaves... 52 7e-005
gb|CN150525.1|CN150525 WOUND1_69_F06.g1_A002 Wounded leaves... 52 7e-005
gb|CX613087.1|CX613087 GABR1_6_E02.b1_A002 GA- or brassinol... 52 7e-005
gb|CX613173.1|CX613173 GABR1_6_E02.g1_A002 GA- or brassinol... 52 7e-005
gb|CX613329.1|CX613329 GABR1_7_C04.g1_A002 GA- or brassinol... 52 7e-005
gb|CX615431.1|CX615431 GABR1_20_C12.b1_A002 GA- or brassino... 52 7e-005
gb|CX615515.1|CX615515 GABR1_20_C12.g1_A002 GA- or brassino... 52 7e-005
gb|CX616002.1|CX616002 GABR1_25_F07.b1_A002 GA- or brassino... 52 7e-005
gb|CX616088.1|CX616088 GABR1_25_F07.g1_A002 GA- or brassino... 52 7e-005
gb|CX618089.1|CX618089 GABR1_37_D07.g1_A002 GA- or brassino... 52 7e-005
gb|CX621693.1|CX621693 GABR1_59_D04.g1_A002 GA- or brassino... 52 7e-005
gb|CX622490.1|CX622490 GABR1_64_F12.b2_A002 GA- or brassino... 52 7e-005
gb|CX622580.1|CX622580 GABR1_64_F12.g2_A002 GA- or brassino... 52 7e-005
gb|CX622958.1|CX622958 GABR1_67_A04.b1_A002 GA- or brassino... 52 7e-005
gb|CX623045.1|CX623045 GABR1_67_A04.g1_A002 GA- or brassino... 52 7e-005
gb|DN551922.1|DN551922 pSPR-RT-MR-H2_E08_C290 pSPR Sorghum ... 52 7e-005
gb|BG101843.1|BG101843 RHIZ2_23_B04.g1_A003 Rhizome2 (RHIZ2... 50 3e-004
gb|CD431013.1|CD431013 ETH1_6_D07.b1_A002 Ethylene-treated ... 50 3e-004
gb|CX618001.1|CX618001 GABR1_37_D07.b1_A002 GA- or brassino... 50 3e-004
gb|CW143516.1|CW143516 104_535_11137456_116_34953_058 Sorgh... 48 0.001
gb|CW143517.1|CW143517 104_535_11137456_148_34957_058 Sorgh... 48 0.001
gb|AW565772.1|AW565772 LG1_349_D08.g1_A002 Light Grown 1 (L... 48 0.001
gb|AW671629.1|AW671629 LG1_349_D08.b1_A002 Light Grown 1 (L... 48 0.001
gb|AW922474.1|AW922474 DG1_19_C09.g1_A002 Dark Grown 1 (DG1... 48 0.001
gb|BE125342.1|BE125342 DG1_19_C09.b1_A002 Dark Grown 1 (DG1... 48 0.001
gb|BE125537.1|BE125537 DG1_27_C09.b1_A002 Dark Grown 1 (DG1... 48 0.001
gb|BE356955.1|BE356955 DG1_145_F04.g1_A002 Dark Grown 1 (DG... 48 0.001
gb|BE360952.1|BE360952 DG1_68_B01.g1_A002 Dark Grown 1 (DG1... 48 0.001
gb|CX609554.1|CX609554 ANR1_13_H07.b1_A002 Anaerobic roots ... 48 0.001
gb|CX609643.1|CX609643 ANR1_13_H07.g1_A002 Anaerobic roots ... 48 0.001
gb|CD222166.1|CD222166 CCC1_2_B09.b1_A007 Callus culture/ce... 46 0.005
gb|CD427547.1|CD427547 SA1_37_F04.b1_A002 Salicylic acid-tr... 46 0.005
gb|BE362785.1|BE362785 DG1_89_F06.b1_A002 Dark Grown 1 (DG1... 44 0.018
gb|CN135676.1|CN135676 OX1_38_G05.b1_A002 Oxidatively-stres... 44 0.018
gb|CN137055.1|CN137055 OX1_55_A02.b1_A002 Oxidatively-stres... 44 0.018
gb|CN137434.1|CN137434 OX1_57_F06.b1_A002 Oxidatively-stres... 44 0.018
gb|CN140537.1|CN140537 OX1_45_A07.b1_A002 Oxidatively-stres... 44 0.018
gb|CN152555.1|CN152555 WOUND1_82_G01.g1_A002 Wounded leaves... 44 0.018
gb|CX621611.1|CX621611 GABR1_59_D04.b1_A002 GA- or brassino... 44 0.018
gb|BZ629138.1|BZ629138 ih64d07.b1 WGS-SbicolorF (DH5a methy... 42 0.072
gb|CL188996.1|CL188996 104_405_10901979_116_32456_002 Sorgh... 42 0.072
gb|CW072038.1|CW072038 104_325_10592041_116_30541 Sorghum m... 42 0.072
gb|CW151606.1|CW151606 104_552_11144032_116_36318_056 Sorgh... 42 0.072
gb|CW151607.1|CW151607 104_552_11144032_148_36317_056 Sorgh... 42 0.072
gb|CW159983.1|CW159983 104_566_11149646_116_36424_057 Sorgh... 42 0.072
gb|BE125230.1|BE125230 DG1_16_G01.b1_A002 Dark Grown 1 (DG1... 42 0.072
gb|BE593283.1|BE593283 WS1_99_H05.g1_A002 Water-stressed 1 ... 42 0.072
gb|BE593698.1|BE593698 WS1_99_H05.b1_A002 Water-stressed 1 ... 42 0.072
gb|BM324513.1|BM324513 PIC1_32_B09.b1_A002 Pathogen-infecte... 42 0.072
gb|CN151710.1|CN151710 WOUND1_77_D04.b1_A002 Wounded leaves... 42 0.072
gb|CL183132.1|CL183132 104_395_10897976_116_31918_200 Sorgh... 40 0.28
gb|CW024065.1|CW024065 104_164_10434736_1_30002 Sorghum met... 40 0.28
gb|CW024066.1|CW024066 104_164_10434736_5_30003 Sorghum met... 40 0.28
gb|CW047128.1|CW047128 104_284_10512551_115_30220 Sorghum m... 40 0.28
gb|CW196494.1|CW196494 104_620_11181195_116_36813_008 Sorgh... 40 0.28
gb|CW196495.1|CW196495 104_620_11181195_148_36814_008 Sorgh... 40 0.28
gb|CW210989.1|CW210989 104_641_11190079_116_37005_022 Sorgh... 40 0.28
gb|CW350148.1|CW350148 fsbb001f011f06f0 Sorghum methylation... 40 0.28
gb|CW363478.1|CW363478 fsbb001f035b13k0 Sorghum methylation... 40 0.28
gb|CW467141.1|CW467141 fsbb001f218l07k0 Sorghum methylation... 40 0.28
gb|CW500270.1|CW500270 fsbb001f295i06f0 Sorghum methylation... 40 0.28
gb|CW500351.1|CW500351 fsbb001f295k02k0 Sorghum methylation... 40 0.28
gb|CD205490.1|CD205490 HS1_14_H07.g1_A012 Heat-shocked seed... 40 0.28
gb|CF772264.1|CF772264 DSBF1_31_D08.g1_A010 Drought-stresse... 40 0.28
gb|AC169374.1| Sorghum bicolor clone SB_BBc0019I06, WORKING... 40 0.28
>gb|CW231329.1|CW231329 104_680_11211059_116_37343_040 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11211059, DNA
sequence
Length = 586
Score = 523 bits (264), Expect = e-147
Identities = 291/300 (97%)
Strand = Plus / Minus
Query: 82 ccgtacgttccgccgacgccgccggcggtgcggacgtgcccgatcgacacgctgaagctg 141
||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 346 ccgtacgttccgccgacgccgccggcgtcgcggacgtgcccgatcgacaccctgaagctg 287
Query: 142 aacgcgtgcgtggacgtgctgagcgggctgatccacctggtgatcgggcaggaggccagg 201
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 286 aacgcgtgcgtggacgtgctgagcgggctgatccacctggtgatcgggcaggaggcaagg 227
Query: 202 tccaagtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgc 261
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 226 tccaagtgctgcccgctggtgcaggggatcgcggacctggacgcggcgctgtgcctctgc 167
Query: 262 accaccatccgcgcgcgcctgctcaacatcaacatctacctccccatcgcgctcaacctg 321
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 accaccatccgcttgcgcctgctcaacatcaacatctacctccccatcgcgctcaacctg 107
Query: 322 ctcatcacctgcggcaagcacgcgccgtcgggcttccagtgcccgccgctctacgactga 381
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 106 ctcatcacctgcggcaagcacccgccgtcgggcttccagtgcccgccgctctacgactga 47
Score = 99.6 bits (50), Expect = 4e-019
Identities = 68/74 (91%)
Strand = Plus / Minus
Query: 28 tacgtgccaccctacgtccccccgacgcctcggccatcaccaccctacgtgccaccgtac 87
||||||||||| ||||||||||||||||||||||| || || || |||||||||||||||
Sbjct: 532 tacgtgccaccatacgtccccccgacgcctcggccgtcgccgccgtacgtgccaccgtac 473
Query: 88 gttccgccgacgcc 101
|| |||||||||||
Sbjct: 472 gtcccgccgacgcc 459
Score = 81.8 bits (41), Expect = 8e-014
Identities = 68/77 (88%)
Strand = Plus / Minus
Query: 25 ccgtacgtgccaccctacgtccccccgacgcctcggccatcaccaccctacgtgccaccg 84
|||||||||||||| |||||||| ||||||||||| || ||||| ||||||||||| ||
Sbjct: 490 ccgtacgtgccaccgtacgtcccgccgacgcctcgcccgtcaccgccctacgtgccgcca 431
Query: 85 tacgttccgccgacgcc 101
||||| || ||||||||
Sbjct: 430 tacgtcccaccgacgcc 414
Score = 75.8 bits (38), Expect = 5e-012
Identities = 71/82 (86%)
Strand = Plus / Minus
Query: 20 caccaccgtacgtgccaccctacgtccccccgacgcctcggccatcaccaccctacgtgc 79
|||| |||||||||||||| |||||||| ||||||||||| || || || || |||||||
Sbjct: 585 caccgccgtacgtgccaccgtacgtcccgccgacgcctcgcccgtcgccgccttacgtgc 526
Query: 80 caccgtacgttccgccgacgcc 101
|||| ||||| || ||||||||
Sbjct: 525 caccatacgtccccccgacgcc 504
Score = 56.0 bits (28), Expect = 5e-006
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 70 ccctacgtgccaccgtacgttccgccgacgccgccg 105
||||||||||| |||||||| |||||||||||||||
Sbjct: 379 ccctacgtgccgccgtacgtgccgccgacgccgccg 344
Score = 52.0 bits (26), Expect = 7e-005
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 64 tcaccaccctacgtgccaccgtacgttccgccgacgcc 101
||||| || ||||||||||||||||| |||||||||||
Sbjct: 586 tcaccgccgtacgtgccaccgtacgtcccgccgacgcc 549
Score = 52.0 bits (26), Expect = 7e-005
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 28 tacgtgccaccctacgtccccccgacgcctcggccatcaccaccctacgtgccaccgt 85
|||||||| || |||||||| ||||||||||| || ||||| ||| ||||||| ||||
Sbjct: 442 tacgtgccgccatacgtcccaccgacgcctcgcccgtcaccgcccaacgtgccgccgt 385
>gb|CW305047.1|CW305047 104_790_11466110_116_37435_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11466110, DNA
sequence
Length = 525
Score = 347 bits (175), Expect = 9e-094
Identities = 199/207 (96%)
Strand = Plus / Minus
Query: 82 ccgtacgttccgccgacgccgccggcggtgcggacgtgcccgatcgacacgctgaagctg 141
||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 207 ccgtacgttccgccgacgccgccggcgtcgcggacgtgcccgatcgacaccctgaagctg 148
Query: 142 aacgcgtgcgtggacgtgctgagcgggctgatccacctggtgatcgggcaggaggccagg 201
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 147 aacgcgtgcgtggacgtgctgagcgggctgatccacctggtgatcgggcaggaggcaagg 88
Query: 202 tccaagtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgc 261
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 87 tccaagtgctgcccgctggtgcaggggatcgcggacctggacgcggcgctgtgcctctgc 28
Query: 262 accaccatccgcgcgcgcctgctcaac 288
|||||||||||| |||||||||||||
Sbjct: 27 accaccatccgcttgcgcctgctcaac 1
Score = 105 bits (53), Expect = 6e-021
Identities = 71/77 (92%)
Strand = Plus / Minus
Query: 25 ccgtacgtgccaccctacgtccccccgacgcctcggccatcaccaccctacgtgccaccg 84
|||||||||||||| |||||||| |||||||||||||| ||||| || ||||||||||||
Sbjct: 486 ccgtacgtgccaccgtacgtcccgccgacgcctcggccgtcaccgccgtacgtgccaccg 427
Query: 85 tacgttccgccgacgcc 101
||||| |||||||||||
Sbjct: 426 tacgtcccgccgacgcc 410
Score = 99.6 bits (50), Expect = 4e-019
Identities = 68/74 (91%)
Strand = Plus / Minus
Query: 28 tacgtgccaccctacgtccccccgacgcctcggccatcaccaccctacgtgccaccgtac 87
||||||||||| ||||||||||||||||||||||| || || || |||||||||||||||
Sbjct: 393 tacgtgccaccatacgtccccccgacgcctcggccgtcgccgccgtacgtgccaccgtac 334
Query: 88 gttccgccgacgcc 101
|| |||||||||||
Sbjct: 333 gtcccgccgacgcc 320
Score = 85.7 bits (43), Expect = 5e-015
Identities = 64/71 (90%)
Strand = Plus / Minus
Query: 31 gtgccaccctacgtccccccgacgcctcggccatcaccaccctacgtgccaccgtacgtt 90
|||||||| ||||||| ||||||||||||||| || || || |||||||||||||||||
Sbjct: 525 gtgccaccatacgtcctcccgacgcctcggccgtcgccgccgtacgtgccaccgtacgtc 466
Query: 91 ccgccgacgcc 101
|||||||||||
Sbjct: 465 ccgccgacgcc 455
Score = 83.8 bits (42), Expect = 2e-014
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 20 caccaccgtacgtgccaccctacgtccccccgacgcctcggccatcaccaccctacgtgc 79
|||| |||||||||||||| |||||||| ||||||||||| || || || ||||||||||
Sbjct: 446 caccgccgtacgtgccaccgtacgtcccgccgacgcctcgcccgtcgccgccctacgtgc 387
Query: 80 caccgtacgttccgccgacgcc 101
|||| ||||| || ||||||||
Sbjct: 386 caccatacgtccccccgacgcc 365
Score = 81.8 bits (41), Expect = 8e-014
Identities = 68/77 (88%)
Strand = Plus / Minus
Query: 25 ccgtacgtgccaccctacgtccccccgacgcctcggccatcaccaccctacgtgccaccg 84
|||||||||||||| |||||||| ||||||||||| || ||||| ||||||||||| ||
Sbjct: 351 ccgtacgtgccaccgtacgtcccgccgacgcctcgcccgtcaccgccctacgtgccgcca 292
Query: 85 tacgttccgccgacgcc 101
||||| || ||||||||
Sbjct: 291 tacgtcccaccgacgcc 275
Score = 56.0 bits (28), Expect = 5e-006
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 70 ccctacgtgccaccgtacgttccgccgacgccgccg 105
||||||||||| |||||||| |||||||||||||||
Sbjct: 240 ccctacgtgccgccgtacgtgccgccgacgccgccg 205
Score = 52.0 bits (26), Expect = 7e-005
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 28 tacgtgccaccctacgtccccccgacgcctcggccatcaccaccctacgtgccaccgt 85
|||||||| || |||||||| ||||||||||| || ||||| ||| ||||||| ||||
Sbjct: 303 tacgtgccgccatacgtcccaccgacgcctcgcccgtcaccgcccaacgtgccgccgt 246
>gb|BF588202.1|BF588202 FM1_38_H12.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 498
Score = 99.6 bits (50), Expect = 4e-019
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 28 tacgtgccaccctacgtccccccgacgcctcggccatcaccaccctacgtgccaccgtac 87
||||||||||| ||||||||||||||||||||||| || || || |||||||||||||||
Sbjct: 341 tacgtgccaccatacgtccccccgacgcctcggccgtcgccgccgtacgtgccaccgtac 400
Query: 88 gttccgccgacgcc 101
|| |||||||||||
Sbjct: 401 gtcccgccgacgcc 414
Score = 97.6 bits (49), Expect = 1e-018
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 25 ccgtacgtgccaccctacgtccccccgacgcctcggccatcaccaccctacgtgccaccg 84
|||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||| |||
Sbjct: 383 ccgtacgtgccaccgtacgtcccgccgacgcctcggccgtcaccgccctacgtgccgccg 442
Query: 85 tacgttccgccgacgcc 101
||||| ||| |||||||
Sbjct: 443 tacgtcccggcgacgcc 459
Score = 83.8 bits (42), Expect = 2e-014
Identities = 72/82 (87%)
Strand = Plus / Plus
Query: 20 caccaccgtacgtgccaccctacgtccccccgacgcctcggccatcaccaccctacgtgc 79
|||| |||||||||||||| |||||||| ||||||||||| || || || ||||||||||
Sbjct: 288 caccgccgtacgtgccaccgtacgtcccgccgacgcctcgcccgtcgccgccctacgtgc 347
Query: 80 caccgtacgttccgccgacgcc 101
|||| ||||| || ||||||||
Sbjct: 348 caccatacgtccccccgacgcc 369
Score = 75.8 bits (38), Expect = 5e-012
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 40 tacgtccccccgacgcctcggccatcaccaccctacgtgccaccgtacgttccgccgacg 99
||||| || |||||||||||||| ||||| || ||||||||||||||||| |||||||||
Sbjct: 263 tacgtgcctccgacgcctcggccgtcaccgccgtacgtgccaccgtacgtcccgccgacg 322
Query: 100 cc 101
||
Sbjct: 323 cc 324
Score = 52.0 bits (26), Expect = 7e-005
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 28 tacgtgccaccctacgtccccccgacgcctcggccatcaccaccctacgtgccaccgt 85
|||||||| || |||||||| |||||||||| || ||||| ||||||||||| ||||
Sbjct: 431 tacgtgccgccgtacgtcccggcgacgcctcgcccgtcaccgccctacgtgccgccgt 488
>gb|CL167398.1|CL167398 104_364_10810050_114_31802_114 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810050, DNA
sequence
Length = 721
Score = 58.0 bits (29), Expect = 1e-006
Identities = 112/137 (81%), Gaps = 2/137 (1%)
Strand = Plus / Minus
Query: 204 caagtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcac 263
||||||||||||| || || ||||| ||| ||| ||||| ||||| ||||||| |||||
Sbjct: 327 caagtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctgtgcac 268
Query: 264 caccatc-cgcgcgcgcctgctcaacatcaacatctacctccccatcgcgctcaacctgc 322
||||||| || | | || |||||||||||| ||||||| ||| | |||||| | || |
Sbjct: 267 caccatcaagctcaag-ctcctcaacatcaacctctacctgcccctggcgctccagctcc 209
Query: 323 tcatcacctgcggcaag 339
|| ||||||||||||||
Sbjct: 208 tcctcacctgcggcaag 192
Score = 44.1 bits (22), Expect = 0.018
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 114 gacgtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgtgctgagcgggctg 171
|||||||||| ||| ||||||||||| ||||||||| ||| ||||| ||||||||
Sbjct: 417 gacgtgcccggcggactcgctgaagctgggcgcgtgcgtagacctgctgggcgggctg 360
>gb|CD232991.1|CD232991 SS1_11_G10.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_11_G10_A012 3', mRNA sequence
Length = 678
Score = 58.0 bits (29), Expect = 1e-006
Identities = 112/137 (81%), Gaps = 2/137 (1%)
Strand = Plus / Plus
Query: 204 caagtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcac 263
||||||||||||| || || ||||| ||| ||| ||||| ||||| ||||||| |||||
Sbjct: 75 caagtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctgtgcac 134
Query: 264 caccatc-cgcgcgcgcctgctcaacatcaacatctacctccccatcgcgctcaacctgc 322
||||||| || | | || |||||||||||| ||||||| ||| | |||||| | || |
Sbjct: 135 caccatcaagctcaag-ctcctcaacatcaacctctacctgcccctggcgctccagctcc 193
Query: 323 tcatcacctgcggcaag 339
|| ||||||||||||||
Sbjct: 194 tcctcacctgcggcaag 210
Score = 42.1 bits (21), Expect = 0.072
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 131 cgctgaagctgaacgcgtgcgtggacgtgctgagcgggctg 171
||||||||||| ||||||||| ||| ||||| ||||||||
Sbjct: 2 cgctgaagctgggcgcgtgcgtagacctgctgggcgggctg 42
>gb|CD428171.1|CD428171 ETH1_28_H04.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_28_H04_A002 3', mRNA sequence
Length = 651
Score = 58.0 bits (29), Expect = 1e-006
Identities = 112/137 (81%), Gaps = 2/137 (1%)
Strand = Plus / Plus
Query: 204 caagtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcac 263
||||||||||||| || || ||||| ||| ||| ||||| ||||| ||||||| |||||
Sbjct: 95 caagtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctgtgcac 154
Query: 264 caccatc-cgcgcgcgcctgctcaacatcaacatctacctccccatcgcgctcaacctgc 322
||||||| || | | || |||||||||||| ||||||| ||| | |||||| | || |
Sbjct: 155 caccatcaagctcaag-ctcctcaacatcaacctctacctgcccctggcgctccagctcc 213
Query: 323 tcatcacctgcggcaag 339
|| ||||||||||||||
Sbjct: 214 tcctcacctgcggcaag 230
Score = 44.1 bits (22), Expect = 0.018
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 114 gacgtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgtgctgagcgggctg 171
|||||||||| ||| ||||||||||| ||||||||| ||| ||||| ||||||||
Sbjct: 5 gacgtgcccggcggactcgctgaagctgggcgcgtgcgtagacctgctgggcgggctg 62
>gb|CN131106.1|CN131106 RHOH1_46_A02.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_46_A02_A002 3', mRNA sequence
Length = 641
Score = 58.0 bits (29), Expect = 1e-006
Identities = 112/137 (81%), Gaps = 2/137 (1%)
Strand = Plus / Plus
Query: 204 caagtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcac 263
||||||||||||| || || ||||| ||| ||| ||||| ||||| ||||||| |||||
Sbjct: 91 caagtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctgtgcac 150
Query: 264 caccatc-cgcgcgcgcctgctcaacatcaacatctacctccccatcgcgctcaacctgc 322
||||||| || | | || |||||||||||| ||||||| ||| | |||||| | || |
Sbjct: 151 caccatcaagctcaag-ctcctcaacatcaacctctacctgcccctggcgctccagctcc 209
Query: 323 tcatcacctgcggcaag 339
|| ||||||||||||||
Sbjct: 210 tcctcacctgcggcaag 226
Score = 44.1 bits (22), Expect = 0.018
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 114 gacgtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgtgctgagcgggctg 171
|||||||||| ||| ||||||||||| ||||||||| ||| ||||| ||||||||
Sbjct: 1 gacgtgcccggcggactcgctgaagctgggcgcgtgcgtagacctgctgggcgggctg 58
>gb|CN137083.1|CN137083 OX1_55_C09.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_55_C09_A002 3', mRNA sequence
Length = 613
Score = 58.0 bits (29), Expect = 1e-006
Identities = 112/137 (81%), Gaps = 2/137 (1%)
Strand = Plus / Plus
Query: 204 caagtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcac 263
||||||||||||| || || ||||| ||| ||| ||||| ||||| ||||||| |||||
Sbjct: 112 caagtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctgtgcac 171
Query: 264 caccatc-cgcgcgcgcctgctcaacatcaacatctacctccccatcgcgctcaacctgc 322
||||||| || | | || |||||||||||| ||||||| ||| | |||||| | || |
Sbjct: 172 caccatcaagctcaag-ctcctcaacatcaacctctacctgcccctggcgctccagctcc 230
Query: 323 tcatcacctgcggcaag 339
|| ||||||||||||||
Sbjct: 231 tcctcacctgcggcaag 247
Score = 44.1 bits (22), Expect = 0.018
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 114 gacgtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgtgctgagcgggctg 171
|||||||||| ||| ||||||||||| ||||||||| ||| ||||| ||||||||
Sbjct: 22 gacgtgcccggcggactcgctgaagctgggcgcgtgcgtagacctgctgggcgggctg 79
>gb|CN138968.1|CN138968 OX1_15_F01.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_15_F01_A002 3', mRNA sequence
Length = 651
Score = 58.0 bits (29), Expect = 1e-006
Identities = 112/137 (81%), Gaps = 2/137 (1%)
Strand = Plus / Plus
Query: 204 caagtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcac 263
||||||||||||| || || ||||| ||| ||| ||||| ||||| ||||||| |||||
Sbjct: 129 caagtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctgtgcac 188
Query: 264 caccatc-cgcgcgcgcctgctcaacatcaacatctacctccccatcgcgctcaacctgc 322
||||||| || | | || |||||||||||| ||||||| ||| | |||||| | || |
Sbjct: 189 caccatcaagctcaag-ctcctcaacatcaacctctacctgcccctggcgctccagctcc 247
Query: 323 tcatcacctgcggcaag 339
|| ||||||||||||||
Sbjct: 248 tcctcacctgcggcaag 264
Score = 44.1 bits (22), Expect = 0.018
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 114 gacgtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgtgctgagcgggctg 171
|||||||||| ||| ||||||||||| ||||||||| ||| ||||| ||||||||
Sbjct: 39 gacgtgcccggcggactcgctgaagctgggcgcgtgcgtagacctgctgggcgggctg 96
>gb|CN141238.1|CN141238 OX1_50_E03.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_50_E03_A002 3', mRNA sequence
Length = 723
Score = 58.0 bits (29), Expect = 1e-006
Identities = 112/137 (81%), Gaps = 2/137 (1%)
Strand = Plus / Plus
Query: 204 caagtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcac 263
||||||||||||| || || ||||| ||| ||| ||||| ||||| ||||||| |||||
Sbjct: 117 caagtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctgtgcac 176
Query: 264 caccatc-cgcgcgcgcctgctcaacatcaacatctacctccccatcgcgctcaacctgc 322
||||||| || | | || |||||||||||| ||||||| ||| | |||||| | || |
Sbjct: 177 caccatcaagctcaag-ctcctcaacatcaacctctacctgcccctggcgctccagctcc 235
Query: 323 tcatcacctgcggcaag 339
|| ||||||||||||||
Sbjct: 236 tcctcacctgcggcaag 252
Score = 44.1 bits (22), Expect = 0.018
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 114 gacgtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgtgctgagcgggctg 171
|||||||||| ||| ||||||||||| ||||||||| ||| ||||| ||||||||
Sbjct: 27 gacgtgcccggcggactcgctgaagctgggcgcgtgcgtagacctgctgggcgggctg 84
>gb|CN144970.1|CN144970 WOUND1_26_B08.b2_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_26_B08_A002 3', mRNA sequence
Length = 636
Score = 58.0 bits (29), Expect = 1e-006
Identities = 112/137 (81%), Gaps = 2/137 (1%)
Strand = Plus / Plus
Query: 204 caagtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcac 263
||||||||||||| || || ||||| ||| ||| ||||| ||||| ||||||| |||||
Sbjct: 117 caagtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctgtgcac 176
Query: 264 caccatc-cgcgcgcgcctgctcaacatcaacatctacctccccatcgcgctcaacctgc 322
||||||| || | | || |||||||||||| ||||||| ||| | |||||| | || |
Sbjct: 177 caccatcaagctcaag-ctcctcaacatcaacctctacctgcccctggcgctccagctcc 235
Query: 323 tcatcacctgcggcaag 339
|| ||||||||||||||
Sbjct: 236 tcctcacctgcggcaag 252
Score = 44.1 bits (22), Expect = 0.018
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 114 gacgtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgtgctgagcgggctg 171
|||||||||| ||| ||||||||||| ||||||||| ||| ||||| ||||||||
Sbjct: 27 gacgtgcccggcggactcgctgaagctgggcgcgtgcgtagacctgctgggcgggctg 84
>gb|CN145334.1|CN145334 WOUND1_28_F11.b2_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_28_F11_A002 3', mRNA sequence
Length = 709
Score = 58.0 bits (29), Expect = 1e-006
Identities = 112/137 (81%), Gaps = 2/137 (1%)
Strand = Plus / Plus
Query: 204 caagtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcac 263
||||||||||||| || || ||||| ||| ||| ||||| ||||| ||||||| |||||
Sbjct: 89 caagtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctgtgcac 148
Query: 264 caccatc-cgcgcgcgcctgctcaacatcaacatctacctccccatcgcgctcaacctgc 322
||||||| || | | || |||||||||||| ||||||| ||| | |||||| | || |
Sbjct: 149 caccatcaagctcaag-ctcctcaacatcaacctctacctgcccctggcgctccagctcc 207
Query: 323 tcatcacctgcggcaag 339
|| ||||||||||||||
Sbjct: 208 tcctcacctgcggcaag 224
Score = 42.1 bits (21), Expect = 0.072
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 131 cgctgaagctgaacgcgtgcgtggacgtgctgagcgggctg 171
||||||||||| ||||||||| ||| ||||| ||||||||
Sbjct: 16 cgctgaagctgggcgcgtgcgtagacctgctgggcgggctg 56
>gb|CN152472.1|CN152472 WOUND1_82_G01.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_82_G01_A002 3', mRNA sequence
Length = 623
Score = 58.0 bits (29), Expect = 1e-006
Identities = 112/137 (81%), Gaps = 2/137 (1%)
Strand = Plus / Plus
Query: 204 caagtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcac 263
||||||||||||| || || ||||| ||| ||| ||||| ||||| ||||||| |||||
Sbjct: 93 caagtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctgtgcac 152
Query: 264 caccatc-cgcgcgcgcctgctcaacatcaacatctacctccccatcgcgctcaacctgc 322
||||||| || | | || |||||||||||| ||||||| ||| | |||||| | || |
Sbjct: 153 caccatcaagctcaag-ctcctcaacatcaacctctacctgcccctggcgctccagctcc 211
Query: 323 tcatcacctgcggcaag 339
|| ||||||||||||||
Sbjct: 212 tcctcacctgcggcaag 228
Score = 44.1 bits (22), Expect = 0.018
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 114 gacgtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgtgctgagcgggctg 171
|||||||||| ||| ||||||||||| ||||||||| ||| ||||| ||||||||
Sbjct: 3 gacgtgcccggcggactcgctgaagctgggcgcgtgcgtagacctgctgggcgggctg 60
>gb|CX607710.1|CX607710 ANR1_30_F11.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_30_F11_A002 3', mRNA sequence
Length = 696
Score = 58.0 bits (29), Expect = 1e-006
Identities = 112/137 (81%), Gaps = 2/137 (1%)
Strand = Plus / Plus
Query: 204 caagtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcac 263
||||||||||||| || || ||||| ||| ||| ||||| ||||| ||||||| |||||
Sbjct: 129 caagtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctgtgcac 188
Query: 264 caccatc-cgcgcgcgcctgctcaacatcaacatctacctccccatcgcgctcaacctgc 322
||||||| || | | || |||||||||||| ||||||| ||| | |||||| | || |
Sbjct: 189 caccatcaagctcaag-ctcctcaacatcaacctctacctgcccctggcgctccagctcc 247
Query: 323 tcatcacctgcggcaag 339
|| ||||||||||||||
Sbjct: 248 tcctcacctgcggcaag 264
Score = 44.1 bits (22), Expect = 0.018
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 114 gacgtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgtgctgagcgggctg 171
|||||||||| ||| ||||||||||| ||||||||| ||| ||||| ||||||||
Sbjct: 39 gacgtgcccggcggactcgctgaagctgggcgcgtgcgtagacctgctgggcgggctg 96
>gb|CF432484.1|CF432484 NIT1_17_E06.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_17_E06_A002 3', mRNA sequence
Length = 674
Score = 54.0 bits (27), Expect = 2e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 204 caagtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcac 263
||||||||||||| || || ||||| ||| ||| ||||| ||||| ||||||| |||||
Sbjct: 65 caagtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctgtgcac 124
Query: 264 caccatc 270
|||||||
Sbjct: 125 caccatc 131
>gb|CN124063.1|CN124063 RHOH1_2_H11.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_2_H11_A002 3', mRNA sequence
Length = 645
Score = 54.0 bits (27), Expect = 2e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 204 caagtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcac 263
||||||||||||| || || ||||| ||| ||| ||||| ||||| ||||||| |||||
Sbjct: 38 caagtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctgtgcac 97
Query: 264 caccatc 270
|||||||
Sbjct: 98 caccatc 104
>gb|CW444386.1|CW444386 fsbb001f164p08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f164p08, DNA
sequence
Length = 505
Score = 52.0 bits (26), Expect = 7e-005
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 229 gtggcggacctggacgcggcgctgtgcctctgcaccaccatc 270
||||| ||||| ||||| ||||| ||||||||||||||||||
Sbjct: 363 gtggccgacctcgacgccgcgctctgcctctgcaccaccatc 322
>gb|AW285514.1|AW285514 LG1_241_E11.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 619
Score = 52.0 bits (26), Expect = 7e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 117 gtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgt 158
|||||| |||||| ||||||||||| |||||||||||||||
Sbjct: 115 gtgccccatcgacgcgctgaagctgggcgcgtgcgtggacgt 156
>gb|AW283787.2|AW283787 LG1_255_F02.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 456
Score = 52.0 bits (26), Expect = 7e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 117 gtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgt 158
|||||| |||||| ||||||||||| |||||||||||||||
Sbjct: 10 gtgccccatcgacgcgctgaagctgggcgcgtgcgtggacgt 51
>gb|AW564740.1|AW564740 LG1_300_H05.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 567
Score = 52.0 bits (26), Expect = 7e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 229 gtggcggacctggacgcggcgctgtgcctctgcaccaccatc 270
||||| ||||| ||||| ||||| ||||||||||||||||||
Sbjct: 372 gtggccgacctcgacgccgcgctctgcctctgcaccaccatc 413
>gb|AW565363.1|AW565363 LG1_343_C04.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 604
Score = 52.0 bits (26), Expect = 7e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 117 gtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgt 158
|||||| |||||| ||||||||||| |||||||||||||||
Sbjct: 48 gtgccccatcgacgcgctgaagctgggcgcgtgcgtggacgt 89
>gb|AW677264.1|AW677264 DG1_6_C10.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 557
Score = 52.0 bits (26), Expect = 7e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 117 gtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgt 158
|||||| |||||| ||||||||||| |||||||||||||||
Sbjct: 5 gtgccccatcgacgcgctgaagctgggcgcgtgcgtggacgt 46
>gb|AW923640.1|AW923640 DG1_56_C09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 459
Score = 52.0 bits (26), Expect = 7e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 117 gtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgt 158
|||||| |||||| ||||||||||| |||||||||||||||
Sbjct: 6 gtgccccatcgacgcgctgaagctgggcgcgtgcgtggacgt 47
>gb|BE125068.1|BE125068 DG1_15_D11.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 524
Score = 52.0 bits (26), Expect = 7e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 117 gtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgt 158
|||||| |||||| ||||||||||| |||||||||||||||
Sbjct: 455 gtgccccatcgacgcgctgaagctgggcgcgtgcgtggacgt 496
>gb|BE356503.1|BE356503 DG1_125_G04.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 482
Score = 52.0 bits (26), Expect = 7e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 117 gtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgt 158
|||||| |||||| ||||||||||| |||||||||||||||
Sbjct: 130 gtgccccatcgacgcgctgaagctgggcgcgtgcgtggacgt 171
>gb|BE357145.1|BE357145 DG1_147_D10.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 588
Score = 52.0 bits (26), Expect = 7e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 117 gtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgt 158
|||||| |||||| ||||||||||| |||||||||||||||
Sbjct: 449 gtgccccatcgacgcgctgaagctgggcgcgtgcgtggacgt 490
>gb|BE357212.1|BE357212 DG1_147_D10.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 530
Score = 52.0 bits (26), Expect = 7e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 117 gtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgt 158
|||||| |||||| ||||||||||| |||||||||||||||
Sbjct: 163 gtgccccatcgacgcgctgaagctgggcgcgtgcgtggacgt 204
>gb|BE357294.1|BE357294 DG1_148_B12.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 617
Score = 52.0 bits (26), Expect = 7e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 117 gtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgt 158
|||||| |||||| ||||||||||| |||||||||||||||
Sbjct: 215 gtgccccatcgacgcgctgaagctgggcgcgtgcgtggacgt 256
>gb|BE357363.1|BE357363 DG1_148_B12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 449
Score = 52.0 bits (26), Expect = 7e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 117 gtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgt 158
|||||| |||||| ||||||||||| |||||||||||||||
Sbjct: 215 gtgccccatcgacgcgctgaagctgggcgcgtgcgtggacgt 256
>gb|BE357447.1|BE357447 DG1_15_D11.b2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 600
Score = 52.0 bits (26), Expect = 7e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 117 gtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgt 158
|||||| |||||| ||||||||||| |||||||||||||||
Sbjct: 455 gtgccccatcgacgcgctgaagctgggcgcgtgcgtggacgt 496
>gb|BE358659.1|BE358659 DG1_30_E01.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 273
Score = 52.0 bits (26), Expect = 7e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 117 gtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgt 158
|||||| |||||| ||||||||||| |||||||||||||||
Sbjct: 6 gtgccccatcgacgcgctgaagctgggcgcgtgcgtggacgt 47
>gb|BE358728.1|BE358728 DG1_31_D06.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 545
Score = 52.0 bits (26), Expect = 7e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 117 gtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgt 158
|||||| |||||| ||||||||||| |||||||||||||||
Sbjct: 171 gtgccccatcgacgcgctgaagctgggcgcgtgcgtggacgt 212
>gb|BE359643.1|BE359643 DG1_56_C09.b2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 633
Score = 52.0 bits (26), Expect = 7e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 117 gtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgt 158
|||||| |||||| ||||||||||| |||||||||||||||
Sbjct: 494 gtgccccatcgacgcgctgaagctgggcgcgtgcgtggacgt 535
>gb|BE359764.1|BE359764 DG1_56_C09.g2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 501
Score = 52.0 bits (26), Expect = 7e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 117 gtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgt 158
|||||| |||||| ||||||||||| |||||||||||||||
Sbjct: 118 gtgccccatcgacgcgctgaagctgggcgcgtgcgtggacgt 159
>gb|BE362845.1|BE362845 DG1_89_F06.g2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 286
Score = 52.0 bits (26), Expect = 7e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 117 gtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgt 158
|||||| |||||| ||||||||||| |||||||||||||||
Sbjct: 12 gtgccccatcgacgcgctgaagctgggcgcgtgcgtggacgt 53
>gb|BG051102.1|BG051102 FM1_56_C10.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 522
Score = 52.0 bits (26), Expect = 7e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 117 gtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgt 158
|||||| |||||| ||||||||||| |||||||||||||||
Sbjct: 479 gtgccccatcgacgcgctgaagctgggcgcgtgcgtggacgt 520
>gb|BG051103.1|BG051103 FM1_56_C11.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 549
Score = 52.0 bits (26), Expect = 7e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 117 gtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgt 158
|||||| |||||| ||||||||||| |||||||||||||||
Sbjct: 479 gtgccccatcgacgcgctgaagctgggcgcgtgcgtggacgt 520
>gb|BG051426.1|BG051426 FM1_56_C10.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 582
Score = 52.0 bits (26), Expect = 7e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 117 gtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgt 158
|||||| |||||| ||||||||||| |||||||||||||||
Sbjct: 126 gtgccccatcgacgcgctgaagctgggcgcgtgcgtggacgt 167
>gb|BG051427.1|BG051427 FM1_56_C11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 525
Score = 52.0 bits (26), Expect = 7e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 117 gtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgt 158
|||||| |||||| ||||||||||| |||||||||||||||
Sbjct: 132 gtgccccatcgacgcgctgaagctgggcgcgtgcgtggacgt 173
>gb|BG053435.1|BG053435 RHIZ2_8_G12.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 539
Score = 52.0 bits (26), Expect = 7e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 117 gtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgt 158
|||||| |||||| ||||||||||| |||||||||||||||
Sbjct: 34 gtgccccatcgacgcgctgaagctgggcgcgtgcgtggacgt 75
>gb|BG053622.1|BG053622 RHIZ2_11_F12.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 509
Score = 52.0 bits (26), Expect = 7e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 117 gtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgt 158
|||||| |||||| ||||||||||| |||||||||||||||
Sbjct: 10 gtgccccatcgacgcgctgaagctgggcgcgtgcgtggacgt 51
>gb|BG053711.1|BG053711 RHIZ2_8_G12.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 512
Score = 52.0 bits (26), Expect = 7e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 117 gtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgt 158
|||||| |||||| ||||||||||| |||||||||||||||
Sbjct: 358 gtgccccatcgacgcgctgaagctgggcgcgtgcgtggacgt 399
>gb|BG053923.1|BG053923 RHIZ2_11_F12.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 531
Score = 52.0 bits (26), Expect = 7e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 117 gtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgt 158
|||||| |||||| ||||||||||| |||||||||||||||
Sbjct: 475 gtgccccatcgacgcgctgaagctgggcgcgtgcgtggacgt 516
>gb|BG102016.1|BG102016 RHIZ2_23_G12.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 634
Score = 52.0 bits (26), Expect = 7e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 117 gtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgt 158
|||||| |||||| ||||||||||| |||||||||||||||
Sbjct: 167 gtgccccatcgacgcgctgaagctgggcgcgtgcgtggacgt 208
>gb|BG102051.1|BG102051 RHIZ2_24_C03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 453
Score = 52.0 bits (26), Expect = 7e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 117 gtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgt 158
|||||| |||||| ||||||||||| |||||||||||||||
Sbjct: 125 gtgccccatcgacgcgctgaagctgggcgcgtgcgtggacgt 166
>gb|BG102239.1|BG102239 RHIZ2_23_G12.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 558
Score = 52.0 bits (26), Expect = 7e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 117 gtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgt 158
|||||| |||||| ||||||||||| |||||||||||||||
Sbjct: 464 gtgccccatcgacgcgctgaagctgggcgcgtgcgtggacgt 505
>gb|BG487884.1|BG487884 RHIZ2_60_E09.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 557
Score = 52.0 bits (26), Expect = 7e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 117 gtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgt 158
|||||| |||||| ||||||||||| |||||||||||||||
Sbjct: 58 gtgccccatcgacgcgctgaagctgggcgcgtgcgtggacgt 99
>gb|BG488183.1|BG488183 RHIZ2_60_E09.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 554
Score = 52.0 bits (26), Expect = 7e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 117 gtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgt 158
|||||| |||||| ||||||||||| |||||||||||||||
Sbjct: 479 gtgccccatcgacgcgctgaagctgggcgcgtgcgtggacgt 520
>gb|BG947206.1|BG947206 IP1_3_G08.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 504
Score = 52.0 bits (26), Expect = 7e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 117 gtgcccgatcgacacgctgaagctgaacgcgtgcgtggacgt 158
|||||| |||||| ||||||||||| |||||||||||||||
Sbjct: 4 gtgccccatcgacgcgctgaagctgggcgcgtgcgtggacgt 45
>gb|CD209901.1|CD209901 HS1_55_C07.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_55_C07_A012 5', mRNA sequence
Length = 606
Score = 52.0 bits (26), Expect = 7e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 229 gtggcggacctggacgcggcgctgtgcctctgcaccaccatc 270
||||| ||||| ||||| ||||| ||||||||||||||||||
Sbjct: 379 gtggccgacctcgacgccgcgctctgcctctgcaccaccatc 420
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 295,443
Number of Sequences: 832831
Number of extensions: 295443
Number of successful extensions: 92032
Number of sequences better than 0.5: 149
Number of HSP's better than 0.5 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91614
Number of HSP's gapped (non-prelim): 418
length of query: 743
length of database: 491,359,669
effective HSP length: 20
effective length of query: 723
effective length of database: 474,703,049
effective search space: 343210304427
effective search space used: 343210304427
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)