BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2621801.2.1
(679 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AB084897.1| Sorghum bicolor ALDH2a mRNA for mitochondri... 940 0.0
gb|CD204822.1|CD204822 HS1_10_F05.b1_A012 Heat-shocked seed... 932 0.0
gb|BE356391.1|BE356391 DG1_124_E05.g1_A002 Dark Grown 1 (DG... 926 0.0
gb|BE600332.1|BE600332 PI1_95_B04.g1_A002 Pathogen induced ... 890 0.0
gb|CD427393.1|CD427393 SA1_30_D09.b1_A002 Salicylic acid-tr... 872 0.0
gb|CD210390.1|CD210390 HS1_51_G05.b1_A012 Heat-shocked seed... 841 0.0
gb|CB925894.1|CB925894 ABA1_30_G05.b1_A012 Abscisic acid-tr... 833 0.0
gb|AW922462.1|AW922462 DG1_19_G06.g1_A002 Dark Grown 1 (DG1... 823 0.0
gb|CD205771.1|CD205771 HS1_18_E04.b1_A012 Heat-shocked seed... 807 0.0
gb|BG556571.1|BG556571 EM1_38_H10.g1_A002 Embryo 1 (EM1) So... 803 0.0
gb|DN551903.1|DN551903 pSPR-RT-MR-H1_F09_S174 pSPR Sorghum ... 781 0.0
gb|BG049524.1|BG049524 EM1_5_B08.g1_A002 Embryo 1 (EM1) Sor... 777 0.0
gb|AW681193.1|AW681193 WS1_9_D05.g1_A002 Water-stressed 1 (... 769 0.0
gb|CD205748.1|CD205748 HS1_18_E05.b1_A012 Heat-shocked seed... 751 0.0
gb|CD224755.1|CD224755 CCC1_36_C01.b1_A007 Callus culture/c... 743 0.0
gb|BE359607.1|BE359607 DG1_54_F08.g2_A002 Dark Grown 1 (DG1... 624 e-177
gb|BE356776.1|BE356776 DG1_12_H04.g1_A002 Dark Grown 1 (DG1... 591 e-167
gb|BE362316.1|BE362316 DG1_85_C07.g1_A002 Dark Grown 1 (DG1... 589 e-166
gb|BG355625.1|BG355625 EM1_16_B06.g1_A002 Embryo 1 (EM1) So... 567 e-160
gb|BE356736.1|BE356736 DG1_12_H04.b1_A002 Dark Grown 1 (DG1... 565 e-159
gb|CW317755.1|CW317755 104_809_11473583_116_35861_086 Sorgh... 462 e-128
gb|CW317757.1|CW317757 104_809_11473584_116_35862_086 Sorgh... 462 e-128
gb|CW424062.1|CW424062 fsbb001f134d10f0 Sorghum methylation... 462 e-128
gb|BE593873.1|BE593873 WS1_103_D07.g1_A002 Water-stressed 1... 462 e-128
gb|BE594190.1|BE594190 WS1_103_D07.b1_A002 Water-stressed 1... 462 e-128
gb|BZ368348.1|BZ368348 id12g11.b1 WGS-SbicolorF (JM107 adap... 454 e-126
gb|BE125651.1|BE125651 DG1_54_F08.b1_A002 Dark Grown 1 (DG1... 244 9e-063
gb|BG558573.1|BG558573 RHIZ2_57_F01.g1_A003 Rhizome2 (RHIZ2... 214 8e-054
gb|CW035143.1|CW035143 104_265_10502987_114_30378 Sorghum m... 212 3e-053
gb|CW241628.1|CW241628 104_700_11218876_148_37543_002 Sorgh... 212 3e-053
gb|CW241627.1|CW241627 104_700_11218876_116_37544_002 Sorgh... 182 3e-044
gb|CW478002.1|CW478002 fsbb001f235k06k0 Sorghum methylation... 182 3e-044
gb|BE125725.1|BE125725 DG1_54_F08.g1_A002 Dark Grown 1 (DG1... 168 4e-040
gb|CB929184.1|CB929184 ABA1_40_B04.b1_A012 Abscisic acid-tr... 137 1e-030
gb|CL162019.1|CL162019 104_354_10806128_114_31830_032 Sorgh... 117 1e-024
gb|AW679042.1|AW679042 WS1_22_G09.b1_A002 Water-stressed 1 ... 70 3e-010
gb|BM326464.1|BM326464 PIC1_57_D05.b1_A002 Pathogen-infecte... 70 3e-010
gb|CF485163.1|CF485163 POL1_29_G03.g1_A002 Pollen Sorghum b... 70 3e-010
gb|CN131219.1|CN131219 RHOH1_46_D03.g1_A002 Acid- and alkal... 70 3e-010
dbj|AB084898.1| Sorghum bicolor ALDH2b mRNA for mitochondri... 70 3e-010
gb|BM324286.1|BM324286 PIC1_26_E06.b1_A002 Pathogen-infecte... 64 2e-008
gb|CD204341.1|CD204341 HS1_7_D12.b1_A012 Heat-shocked seedl... 62 7e-008
gb|CF760090.1|CF760090 DSAF1_55_D06.b1_A011 Drought-stresse... 62 7e-008
gb|CX607177.1|CX607177 ANR1_7_D04.b1_A002 Anaerobic roots S... 62 7e-008
gb|CD205469.1|CD205469 HS1_14_F10.b1_A012 Heat-shocked seed... 60 3e-007
gb|CL177395.1|CL177395 104_384_10893805_116_31916_253 Sorgh... 56 4e-006
gb|CL177396.1|CL177396 104_384_10893805_148_31915_253 Sorgh... 56 4e-006
gb|CW137973.1|CW137973 104_525_11119958_148_34875_055 Sorgh... 56 4e-006
gb|CW276375.1|CW276375 104_750_11405455_116_35396_032 Sorgh... 56 4e-006
gb|CW282858.1|CW282858 104_759_11408938_148_35474_045 Sorgh... 56 4e-006
gb|CW380051.1|CW380051 fsbb001f059k11k0 Sorghum methylation... 56 4e-006
gb|CW405552.1|CW405552 fsbb001f098c18k0 Sorghum methylation... 56 4e-006
gb|CW430773.1|CW430773 fsbb001f144k09f0 Sorghum methylation... 56 4e-006
gb|BE362145.1|BE362145 DG1_84_D03.g1_A002 Dark Grown 1 (DG1... 56 4e-006
gb|BG464949.1|BG464949 EM1_36_F03.g1_A002 Embryo 1 (EM1) So... 54 2e-005
gb|CD206090.1|CD206090 HS1_20_F12.g1_A012 Heat-shocked seed... 54 2e-005
gb|AW565936.1|AW565936 LG1_353_H05.g1_A002 Light Grown 1 (L... 52 7e-005
gb|AW680052.1|AW680052 WS1_3_H03.g1_A002 Water-stressed 1 (... 52 7e-005
gb|BE601404.1|BE601404 PI1_92_E08.g1_A002 Pathogen induced ... 52 7e-005
gb|BF656935.1|BF656935 OV2_22_H01.g1_A002 Ovary 2 (OV2) Sor... 52 7e-005
gb|BG158200.1|BG158200 EM1_11_F03.g1_A002 Embryo 1 (EM1) So... 52 7e-005
gb|BG487993.1|BG487993 RHIZ2_61_G10.g1_A003 Rhizome2 (RHIZ2... 52 7e-005
gb|BG649225.1|BG649225 EM1_78_G08.g1_A002 Embryo 1 (EM1) So... 52 7e-005
gb|BI139712.1|BI139712 IP1_48_B08.g1_A002 Immature pannicle... 52 7e-005
gb|BM325708.1|BM325708 PIC1_47_G10.b1_A002 Pathogen-infecte... 52 7e-005
gb|BM331062.1|BM331062 PIC1_69_B05.g1_A002 Pathogen-infecte... 52 7e-005
gb|BM331189.1|BM331189 PIC1_70_G07.g1_A002 Pathogen-infecte... 52 7e-005
gb|CD204677.1|CD204677 HS1_9_F09.b1_A012 Heat-shocked seedl... 52 7e-005
gb|CD206066.1|CD206066 HS1_20_F12.b1_A012 Heat-shocked seed... 52 7e-005
gb|CD208484.1|CD208484 HS1_38_A09.b1_A012 Heat-shocked seed... 52 7e-005
gb|CD230773.1|CD230773 SS1_9_C10.b1_A012 Salt-stressed seed... 52 7e-005
gb|CF485078.1|CF485078 POL1_29_G03.b1_A002 Pollen Sorghum b... 52 7e-005
gb|CF758582.1|CF758582 DSAF1_34_A08.g1_A011 Drought-stresse... 52 7e-005
gb|CF771212.1|CF771212 DSBF1_15_F11.g1_A010 Drought-stresse... 52 7e-005
gb|CN123838.1|CN123838 RHOH1_1_C05.b1_A002 Acid- and alkali... 52 7e-005
gb|CX613603.1|CX613603 GABR1_9_D03.b1_A002 GA- or brassinol... 52 7e-005
gb|AW677315.1|AW677315 DG1_5_B11.g1_A002 Dark Grown 1 (DG1)... 48 0.001
gb|BG049685.1|BG049685 EM1_7_G02.g1_A002 Embryo 1 (EM1) Sor... 46 0.004
gb|BG557118.1|BG557118 EM1_42_H01.g1_A002 Embryo 1 (EM1) So... 46 0.004
gb|BI643574.1|BI643574 DG1_91_H10.g1_A002 Dark Grown 1 (DG1... 46 0.004
gb|BM327561.1|BM327561 PIC1_7_E11.g1_A002 Pathogen-infected... 46 0.004
gb|BM328784.1|BM328784 PIC1_26_E06.g1_A002 Pathogen-infecte... 46 0.004
gb|BM330850.1|BM330850 PIC1_57_D05.g1_A002 Pathogen-infecte... 46 0.004
gb|CD228530.1|CD228530 CCC1_8_G01.b1_A007 Callus culture/ce... 46 0.004
gb|CF428990.1|CF428990 PH1_19_F10.b1_A002 Phosphorous-defic... 46 0.004
gb|CF771043.1|CF771043 DSBF1_13_B09.g1_A010 Drought-stresse... 46 0.004
gb|CW456792.1|CW456792 fsbb001f202f01f0 Sorghum methylation... 42 0.066
gb|BE597768.1|BE597768 PI1_65_A07.g1_A002 Pathogen induced ... 42 0.066
gb|CW153701.1|CW153701 104_555_11145187_116_36339_072 Sorgh... 40 0.26
gb|CW153702.1|CW153702 104_555_11145187_148_36340_072 Sorgh... 40 0.26
gb|CW197804.1|CW197804 104_622_11181875_116_36829_044 Sorgh... 40 0.26
gb|CW197805.1|CW197805 104_622_11181875_148_36830_044 Sorgh... 40 0.26
gb|CW215488.1|CW215488 104_647_11194565_148_37162_017 Sorgh... 40 0.26
gb|CW254711.1|CW254711 104_719_11225826_116_35123_079 Sorgh... 40 0.26
gb|CW465208.1|CW465208 fsbb001f215n16f0 Sorghum methylation... 40 0.26
gb|CW469610.1|CW469610 fsbb001f222g16k0 Sorghum methylation... 40 0.26
gb|CW482017.1|CW482017 fsbb001f241o08f0 Sorghum methylation... 40 0.26
gb|CD210189.1|CD210189 HS1_57_A03.g1_A012 Heat-shocked seed... 40 0.26
gb|CD229366.1|CD229366 CCC1_14_B12.g1_A007 Callus culture/c... 40 0.26
gb|CN132724.1|CN132724 OX1_7_G05.g1_A002 Oxidatively-stress... 40 0.26
gb|CN140898.1|CN140898 OX1_47_G11.g1_A002 Oxidatively-stres... 40 0.26
gb|CN142352.1|CN142352 WOUND1_9_B01.g1_A002 Wounded leaves ... 40 0.26
gb|CN143171.1|CN143171 WOUND1_14_C06.g1_A002 Wounded leaves... 40 0.26
gb|CN144311.1|CN144311 WOUND1_21_A04.g1_A002 Wounded leaves... 40 0.26
gb|CN148297.1|CN148297 WOUND1_55_A04.g1_A002 Wounded leaves... 40 0.26
gb|CN150633.1|CN150633 WOUND1_70_B08.g1_A002 Wounded leaves... 40 0.26
gb|CX612299.1|CX612299 GABR1_1_D11.g1_A002 GA- or brassinol... 40 0.26
gb|CX615512.1|CX615512 GABR1_20_C08.g1_A002 GA- or brassino... 40 0.26
gb|CX616113.1|CX616113 GABR1_25_H08.g1_A002 GA- or brassino... 40 0.26
gb|CX617416.1|CX617416 GABR1_33_D04.g1_A002 GA- or brassino... 40 0.26
gb|CX621517.1|CX621517 GABR1_58_C06.g1_A002 GA- or brassino... 40 0.26
>dbj|AB084897.1| Sorghum bicolor ALDH2a mRNA for mitochondrial aldehyde dehydrogenase,
complete cds
Length = 1862
Score = 940 bits (474), Expect = 0.0
Identities = 556/582 (95%), Gaps = 1/582 (0%)
Strand = Plus / Minus
Query: 99 ttacagccatgcggggttcttgatgggtgtgacgacggcctttgtctggaggtagttgcg 158
||||||||| ||||||| ||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 1771 ttacagccaggcggggtccttgatgggcgtgacgacggccttggtctggaggtagttgcg 1712
Query: 159 gagggcgtagatgcccttctcccgcccgacgccgctcatcttgtagccgccgaacgggat 218
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1711 gagggcgtagacgcccttctctcgcccgacgccgctcatcttgtagccgccgaacgggat 1652
Query: 219 ggtggcgtcgaacacgtcgtagcagttcacccacacggtgcccgcccgcagcgcccgcga 278
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 1651 ggtggcgtcgaacacgtcgtagcagttcacccacaccgtgcccgcccgcagcgcccggga 1592
Query: 279 cagggtgttggccgcgtccaggctccgcgtgaacacccccgccgccagcccgtagggcgt 338
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1591 cagcgtgttggccgcgtccaggctccgcgtgaacacccccgccgccagcccgtagtgcgt 1532
Query: 339 cgcgttcgcgcgccggatcacctcctccacgccgctgaacttgagaatggtttgcaccgg 398
||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||
Sbjct: 1531 cgcgttcgcgcgccggatcacctcctccatgccgctgaacttgaggatggtctgcaccgg 1472
Query: 399 cccgaatatctcctcccgagcgatcttcatttcgtccttggcgtcggcaaacaccgtcgg 458
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1471 cccgaatatctcctcccgagcgatcttcatgtcgtccttggcgtcggcaaacaccgtcgg 1412
Query: 459 ctgtatgtagaagcccctttcgcctaccctgtcgccgccggcgacgagggtggcaccgct 518
|||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||
Sbjct: 1411 ctgtatgtagaagcccctgctgcctaccctgtcgccgccggtgacgagggtggcgccgct 1352
Query: 519 gtcgacgccggactgaacgtaccgcaagatcttgttgaattgctcgccgtcgatctgagg 578
|||||| |||||||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 1351 gtcgacaccggactggacgtaccgcaagatcttgttgaactgatcgccgtcgatctgagg 1292
Query: 579 cccctgttcgaccccgtccctgaaggggtcgccgacgacgcgctt-agggcgcgggcctt 637
||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 1291 cccctgttcgaccccgttcctgaaggggtcgccgaccacgcgcttcagggcgcgggcctt 1232
Query: 638 ggacttctccacgaactcgtcgtacacgcgctcgtgcacgaa 679
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1231 ggacttctccacgaactcgtcgtacacgcgctcgtgcacgaa 1190
Score = 42.1 bits (21), Expect = 0.066
Identities = 39/44 (88%), Gaps = 2/44 (4%)
Strand = Plus / Minus
Query: 32 ttgttttattcgtcacgttctc--cgagaaccggcgcagcgccg 73
|||||||||| ||||| ||||| |||||| |||||||||||||
Sbjct: 1832 ttgttttattggtcacattctctgcgagaatcggcgcagcgccg 1789
>gb|CD204822.1|CD204822 HS1_10_F05.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_10_F05_A012 3', mRNA sequence
Length = 661
Score = 932 bits (470), Expect = 0.0
Identities = 555/582 (95%), Gaps = 1/582 (0%)
Strand = Plus / Minus
Query: 99 ttacagccatgcggggttcttgatgggtgtgacgacggcctttgtctggaggtagttgcg 158
||||||||| ||||||| ||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 595 ttacagccaggcggggtccttgatgggcgtgacgacggccttggtctggaggtagttgcg 536
Query: 159 gagggcgtagatgcccttctcccgcccgacgccgctcatcttgtagccgccgaacgggat 218
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 gagggcgtagacgcccttctcccgcccgacgccgctcatcttgtagccgccgaacgggat 476
Query: 219 ggtggcgtcgaacacgtcgtagcagttcacccacacggtgcccgcccgcagcgcccgcga 278
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 475 ggtggcgtcgaacacgtcgtagcagttcacccacaccgtgcccgcccgcagcgcccggga 416
Query: 279 cagggtgttggccgcgtccaggctccgcgtgaacacccccgccgccagcccgtagggcgt 338
||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 415 cagcgtgttggccgcgaccaggctccgcgtgaacacccccgccgccagcccgtagtgcgt 356
Query: 339 cgcgttcgcgcgccggatcacctcctccacgccgctgaacttgagaatggtttgcaccgg 398
||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||
Sbjct: 355 cgcgttcgcgcgccggatcacctcctccatgccgctgaacttgaggatggtctgcaccgg 296
Query: 399 cccgaatatctcctcccgagcgatcttcatttcgtccttggcgtcggcaaacaccgtcgg 458
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 295 cccgaatatctcctcccgagcgatcttcatgtcgtccttagcgtcggcaaacaccgtcgg 236
Query: 459 ctgtatgtagaagcccctttcgcctaccctgtcgccgccggcgacgagggtggcaccgct 518
|||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||
Sbjct: 235 ctgtatgtagaagcccctgctgcctaccctgtcgccgccggtgacgagggtggcgccgct 176
Query: 519 gtcgacgccggactgaacgtaccgcaagatcttgttgaattgctcgccgtcgatctgagg 578
|||||| |||||||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 175 gtcgacaccggactggacgtaccgcaagatcttgttgaactgatcgccgtcgatctgagg 116
Query: 579 cccctgttcgaccccgtccctgaaggggtcgccgacgacgcgctt-agggcgcgggcctt 637
||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 115 cccctgttcgaccccgttcctgaaggggtcgccgaccacgcgcttcagggcgcgggcctt 56
Query: 638 ggacttctccacgaactcgtcgtacacgcgctcgtgcacgaa 679
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55 ggacttctccacgaactcgtcgtacacgcgctcgtgcacgaa 14
Score = 42.1 bits (21), Expect = 0.066
Identities = 39/44 (88%), Gaps = 2/44 (4%)
Strand = Plus / Minus
Query: 32 ttgttttattcgtcacgttctc--cgagaaccggcgcagcgccg 73
|||||||||| ||||| ||||| |||||| |||||||||||||
Sbjct: 656 ttgttttattggtcacattctctgcgagaatcggcgcagcgccg 613
>gb|BE356391.1|BE356391 DG1_124_E05.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 591
Score = 926 bits (467), Expect = 0.0
Identities = 552/579 (95%), Gaps = 1/579 (0%)
Strand = Plus / Minus
Query: 99 ttacagccatgcggggttcttgatgggtgtgacgacggcctttgtctggaggtagttgcg 158
||||||||| ||||||| |||| |||| |||||||||||||| |||||||||||||||||
Sbjct: 579 ttacagccaggcggggtccttgttgggcgtgacgacggccttggtctggaggtagttgcg 520
Query: 159 gagggcgtagatgcccttctcccgcccgacgccgctcatcttgtagccgccgaacgggat 218
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gagggcgtagacgcccttctctcgcccgacgccgctcatcttgtagccgccgaacgggat 460
Query: 219 ggtggcgtcgaacacgtcgtagcagttcacccacacggtgcccgcccgcagcgcccgcga 278
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 459 ggtggcgtcgaacacgtcgtagcagttcacccacaccgtgcccgcccgcagcgcccggga 400
Query: 279 cagggtgttggccgcgtccaggctccgcgtgaacacccccgccgccagcccgtagggcgt 338
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 399 cagcgtgttggccgcgtccaggctccgcgtgaacacccccgccgccagcccgtagtgcgt 340
Query: 339 cgcgttcgcgcgccggatcacctcctccacgccgctgaacttgagaatggtttgcaccgg 398
||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||
Sbjct: 339 cgcgttcgcgcgccggatcacctcctccatgccgctgaacttgaggatggtctgcaccgg 280
Query: 399 cccgaatatctcctcccgagcgatcttcatttcgtccttggcgtcggcaaacaccgtcgg 458
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 279 cccgaatatctcctcccgagcgatcttcatgtcgtccttggcgtcggcaaacaccgtcgg 220
Query: 459 ctgtatgtagaagcccctttcgcctaccctgtcgccgccggcgacgagggtggcaccgct 518
|||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||
Sbjct: 219 ctgtatgtagaagcccctgctgcctaccctgtcgccgccggtgacgagggtggcgccgct 160
Query: 519 gtcgacgccggactgaacgtaccgcaagatcttgttgaattgctcgccgtcgatctgagg 578
|||||| |||||||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 159 gtcgacaccggactggacgtaccgcaagatcttgttgaactgatcgccgtcgatctgagg 100
Query: 579 cccctgttcgaccccgtccctgaaggggtcgccgacgacgcgctt-agggcgcgggcctt 637
||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 99 cccctgttcgaccccgttcctgaaggggtcgccgaccacgcgcttcagggcgcgggcctt 40
Query: 638 ggacttctccacgaactcgtcgtacacgcgctcgtgcac 676
|||||||||||||||||||||||||||||||||||||||
Sbjct: 39 ggacttctccacgaactcgtcgtacacgcgctcgtgcac 1
>gb|BE600332.1|BE600332 PI1_95_B04.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 596
Score = 890 bits (449), Expect = 0.0
Identities = 531/557 (95%), Gaps = 1/557 (0%)
Strand = Plus / Minus
Query: 99 ttacagccatgcggggttcttgatgggtgtgacgacggcctttgtctggaggtagttgcg 158
||||||||| ||||||| ||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 557 ttacagccaggcggggtccttgatgggcgtgacgacggccttggtctggaggtagttgcg 498
Query: 159 gagggcgtagatgcccttctcccgcccgacgccgctcatcttgtagccgccgaacgggat 218
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gagggcgtagacgcccttctctcgcccgacgccgctcatcttgtagccgccgaacgggat 438
Query: 219 ggtggcgtcgaacacgtcgtagcagttcacccacacggtgcccgcccgcagcgcccgcga 278
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 437 ggtggcgtcgaacacgtcgtagcagttcacccacaccgtgcccgcccgcagcgcccggga 378
Query: 279 cagggtgttggccgcgtccaggctccgcgtgaacacccccgccgccagcccgtagggcgt 338
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 377 cagcgtgttggccgcgtccaggctccgcgtgaacacccccgccgccagcccgtagtgcgt 318
Query: 339 cgcgttcgcgcgccggatcacctcctccacgccgctgaacttgagaatggtttgcaccgg 398
||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||
Sbjct: 317 cgcgttcgcgcgccggatcacctcctccatgccgctgaacttgaggatggtctgcaccgg 258
Query: 399 cccgaatatctcctcccgagcgatcttcatttcgtccttggcgtcggcaaacaccgtcgg 458
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 257 cccgaatatctcctcccgagcgatcttcatgtcgtccttggcgtcggcaaacaccgtcgg 198
Query: 459 ctgtatgtagaagcccctttcgcctaccctgtcgccgccggcgacgagggtggcaccgct 518
|||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||
Sbjct: 197 ctgtatgtagaagcccctgctgcctaccctgtcgccgccggtgacgagggtggcgccgct 138
Query: 519 gtcgacgccggactgaacgtaccgcaagatcttgttgaattgctcgccgtcgatctgagg 578
|||||| |||||||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 137 gtcgacaccggactggacgtaccgcaagatcttgttgaactgatcgccgtcgatctgagg 78
Query: 579 cccctgttcgaccccgtccctgaaggggtcgccgacgacgcgctt-agggcgcgggcctt 637
||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 77 cccctgttcgaccccgttcctgaaggggtcgccgaccacgcgcttcagggcgcgggcctt 18
Query: 638 ggacttctccacgaact 654
|||||||||||||||||
Sbjct: 17 ggacttctccacgaact 1
>gb|CD427393.1|CD427393 SA1_30_D09.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_30_D09_A002 3', mRNA sequence
Length = 615
Score = 872 bits (440), Expect = 0.0
Identities = 522/548 (95%), Gaps = 1/548 (0%)
Strand = Plus / Minus
Query: 99 ttacagccatgcggggttcttgatgggtgtgacgacggcctttgtctggaggtagttgcg 158
||||||||| ||||||| ||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 548 ttacagccaggcggggtccttgatgggcgtgacgacggccttggtctggaggtagttgcg 489
Query: 159 gagggcgtagatgcccttctcccgcccgacgccgctcatcttgtagccgccgaacgggat 218
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gagggcgtagacgcccttctctcgcccgacgccgctcatcttgtagccgccgaacgggat 429
Query: 219 ggtggcgtcgaacacgtcgtagcagttcacccacacggtgcccgcccgcagcgcccgcga 278
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 428 ggtggcgtcgaacacgtcgtagcagttcacccacaccgtgcccgcccgcagcgcccggga 369
Query: 279 cagggtgttggccgcgtccaggctccgcgtgaacacccccgccgccagcccgtagggcgt 338
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 368 cagcgtgttggccgcgtccaggctccgcgtgaacacccccgccgccagcccgtagtgcgt 309
Query: 339 cgcgttcgcgcgccggatcacctcctccacgccgctgaacttgagaatggtttgcaccgg 398
||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||
Sbjct: 308 cgcgttcgcgcgccggatcacctcctccatgccgctgaacttgaggatggtctgcaccgg 249
Query: 399 cccgaatatctcctcccgagcgatcttcatttcgtccttggcgtcggcaaacaccgtcgg 458
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 248 cccgaatatctcctcccgagcgatcttcatgtcgtccttggcgtcggcaaacaccgtcgg 189
Query: 459 ctgtatgtagaagcccctttcgcctaccctgtcgccgccggcgacgagggtggcaccgct 518
|||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||
Sbjct: 188 ctgtatgtagaagcccctgctgcctaccctgtcgccgccggtgacgagggtggcgccgct 129
Query: 519 gtcgacgccggactgaacgtaccgcaagatcttgttgaattgctcgccgtcgatctgagg 578
|||||| |||||||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 128 gtcgacaccggactggacgtaccgcaagatcttgttgaactgatcgccgtcgatctgagg 69
Query: 579 cccctgttcgaccccgtccctgaaggggtcgccgacgacgcgctt-agggcgcgggcctt 637
||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 68 cccctgttcgaccccgttcctgaaggggtcgccgaccacgcgcttcagggcgcgggcctt 9
Query: 638 ggacttct 645
||||||||
Sbjct: 8 ggacttct 1
Score = 42.1 bits (21), Expect = 0.066
Identities = 39/44 (88%), Gaps = 2/44 (4%)
Strand = Plus / Minus
Query: 32 ttgttttattcgtcacgttctc--cgagaaccggcgcagcgccg 73
|||||||||| ||||| ||||| |||||| |||||||||||||
Sbjct: 609 ttgttttattggtcacattctctgcgagaatcggcgcagcgccg 566
>gb|CD210390.1|CD210390 HS1_51_G05.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_51_G05_A012 3', mRNA sequence
Length = 575
Score = 841 bits (424), Expect = 0.0
Identities = 499/524 (95%)
Strand = Plus / Minus
Query: 99 ttacagccatgcggggttcttgatgggtgtgacgacggcctttgtctggaggtagttgcg 158
||||||||| ||||||| ||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 524 ttacagccaggcggggtccttgatgggcgtgacgacggccttggtctggaggtagttgcg 465
Query: 159 gagggcgtagatgcccttctcccgcccgacgccgctcatcttgtagccgccgaacgggat 218
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gagggcgtagacgcccttctcccgcccgacgccgctcatcttgtagccgccgaacgggat 405
Query: 219 ggtggcgtcgaacacgtcgtagcagttcacccacacggtgcccgcccgcagcgcccgcga 278
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 404 ggtggcgtcgaacacgtcgtagcagttcacccacaccgtgcccgcccgcagcgcccggga 345
Query: 279 cagggtgttggccgcgtccaggctccgcgtgaacacccccgccgccagcccgtagggcgt 338
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 344 cagcgtgttggccgcgtccaggctccgcgtgaacacccccgccgccagcccgtagtgcgt 285
Query: 339 cgcgttcgcgcgccggatcacctcctccacgccgctgaacttgagaatggtttgcaccgg 398
||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||
Sbjct: 284 cgcgttcgcgcgccggatcacctcctccatgccgctgaacttgaggatggtctgcaccgg 225
Query: 399 cccgaatatctcctcccgagcgatcttcatttcgtccttggcgtcggcaaacaccgtcgg 458
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 224 cccgaatatctcctcccgagcgatcttcatgtcgtccttagcgtcggcaaacaccgtcgg 165
Query: 459 ctgtatgtagaagcccctttcgcctaccctgtcgccgccggcgacgagggtggcaccgct 518
|||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||
Sbjct: 164 ctgtatgtagaagcccctgctgcctaccctgtcgccgccggtgacgagggtggcgccgct 105
Query: 519 gtcgacgccggactgaacgtaccgcaagatcttgttgaattgctcgccgtcgatctgagg 578
|||||| |||||||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 104 gtcgacaccggactggacgtaccgcaagatcttgttgaactgatcgccgtcgatctgagg 45
Query: 579 cccctgttcgaccccgtccctgaaggggtcgccgacgacgcgct 622
||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 44 cccctgttcgaccccgttcctgaaggggtcgccgaccacgcgct 1
>gb|CB925894.1|CB925894 ABA1_30_G05.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_30_G05_A012 3', mRNA sequence
Length = 582
Score = 833 bits (420), Expect = 0.0
Identities = 492/516 (95%)
Strand = Plus / Minus
Query: 99 ttacagccatgcggggttcttgatgggtgtgacgacggcctttgtctggaggtagttgcg 158
||||||||| ||||||| ||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 516 ttacagccaggcggggtccttgatgggcgtgacgacggccttggtctggaggtagttgcg 457
Query: 159 gagggcgtagatgcccttctcccgcccgacgccgctcatcttgtagccgccgaacgggat 218
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gagggcgtagacgcccttctcccgcccgacgccgctcatcttgtagccgccgaacgggat 397
Query: 219 ggtggcgtcgaacacgtcgtagcagttcacccacacggtgcccgcccgcagcgcccgcga 278
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 396 ggtggcgtcgaacacgtcgtagcagttcacccacaccgtgcccgcccgcagcgcccggga 337
Query: 279 cagggtgttggccgcgtccaggctccgcgtgaacacccccgccgccagcccgtagggcgt 338
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 336 cagcgtgttggccgcgtccaggctccgcgtgaacacccccgccgccagcccgtagtgcgt 277
Query: 339 cgcgttcgcgcgccggatcacctcctccacgccgctgaacttgagaatggtttgcaccgg 398
||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||
Sbjct: 276 cgcgttcgcgcgccggatcacctcctccatgccgctgaacttgaggatggtctgcaccgg 217
Query: 399 cccgaatatctcctcccgagcgatcttcatttcgtccttggcgtcggcaaacaccgtcgg 458
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 216 cccgaatatctcctcccgagcgatcttcatgtcgtccttagcgtcggcaaacaccgtcgg 157
Query: 459 ctgtatgtagaagcccctttcgcctaccctgtcgccgccggcgacgagggtggcaccgct 518
|||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||
Sbjct: 156 ctgtatgtagaagcccctgctgcctaccctgtcgccgccggtgacgagggtggcgccgct 97
Query: 519 gtcgacgccggactgaacgtaccgcaagatcttgttgaattgctcgccgtcgatctgagg 578
|||||| |||||||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 96 gtcgacaccggactggacgtaccgcaagatcttgttgaactgatcgccgtcgatctgagg 37
Query: 579 cccctgttcgaccccgtccctgaaggggtcgccgac 614
||||||||||||||||| ||||||||||||||||||
Sbjct: 36 cccctgttcgaccccgttcctgaaggggtcgccgac 1
>gb|AW922462.1|AW922462 DG1_19_G06.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 568
Score = 823 bits (415), Expect = 0.0
Identities = 487/511 (95%)
Strand = Plus / Minus
Query: 99 ttacagccatgcggggttcttgatgggtgtgacgacggcctttgtctggaggtagttgcg 158
||||||||| ||||||| ||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 511 ttacagccaggcggggtccttgatgggcgtgacgacggccttggtctggaggtagttgcg 452
Query: 159 gagggcgtagatgcccttctcccgcccgacgccgctcatcttgtagccgccgaacgggat 218
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gagggcgtagacgcccttctctcgcccgacgccgctcatcttgtagccgccgaacgggat 392
Query: 219 ggtggcgtcgaacacgtcgtagcagttcacccacacggtgcccgcccgcagcgcccgcga 278
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 391 ggtggcgtcgaacacgtcgtagcagttcacccacaccgtgcccgcccgcagcgcccggga 332
Query: 279 cagggtgttggccgcgtccaggctccgcgtgaacacccccgccgccagcccgtagggcgt 338
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 331 cagcgtgttggccgcgtccaggctccgcgtgaacacccccgccgccagcccgtagtgcgt 272
Query: 339 cgcgttcgcgcgccggatcacctcctccacgccgctgaacttgagaatggtttgcaccgg 398
||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||
Sbjct: 271 cgcgttcgcgcgccggatcacctcctccatgccgctgaacttgaggatggtctgcaccgg 212
Query: 399 cccgaatatctcctcccgagcgatcttcatttcgtccttggcgtcggcaaacaccgtcgg 458
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 211 cccgaatatctcctcccgagcgatcttcatgtcgtccttggcgtcggcaaacaccgtcgg 152
Query: 459 ctgtatgtagaagcccctttcgcctaccctgtcgccgccggcgacgagggtggcaccgct 518
|||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||
Sbjct: 151 ctgtatgtagaagcccctgctgcctaccctgtcgccgccggtgacgagggtggcgccgct 92
Query: 519 gtcgacgccggactgaacgtaccgcaagatcttgttgaattgctcgccgtcgatctgagg 578
|||||| |||||||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 91 gtcgacaccggactggacgtaccgcaagatcttgttgaactgatcgccgtcgatctgagg 32
Query: 579 cccctgttcgaccccgtccctgaaggggtcg 609
||||||||||||||||| |||||||||||||
Sbjct: 31 cccctgttcgaccccgttcctgaaggggtcg 1
>gb|CD205771.1|CD205771 HS1_18_E04.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_18_E04_A012 3', mRNA sequence
Length = 573
Score = 807 bits (407), Expect = 0.0
Identities = 482/507 (95%)
Strand = Plus / Minus
Query: 99 ttacagccatgcggggttcttgatgggtgtgacgacggcctttgtctggaggtagttgcg 158
||||||||| ||||||| ||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 507 ttacagccaggcggggtccttgatgggcgtgacgacggccttggtctggaggtagttgcg 448
Query: 159 gagggcgtagatgcccttctcccgcccgacgccgctcatcttgtagccgccgaacgggat 218
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gagggcgtagacgcccttctcccgcccgacgccgctcatcttgtagccgccgaacgggat 388
Query: 219 ggtggcgtcgaacacgtcgtagcagttcacccacacggtgcccgcccgcagcgcccgcga 278
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 387 ggtggcgtcgaacacgtcgtagcagttcacccacaccgtgcccgcccgcagcgcccggga 328
Query: 279 cagggtgttggccgcgtccaggctccgcgtgaacacccccgccgccagcccgtagggcgt 338
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 327 cagcgtgttggccgcgtccaggctccgcgtgaacacccccgccgccagcccgtagtgcgt 268
Query: 339 cgcgttcgcgcgccggatcacctcctccacgccgctgaacttgagaatggtttgcaccgg 398
||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||
Sbjct: 267 cgcgttcgcgcgccggatcacctcctccatgccgctgaacttgaggatggtctgcaccgg 208
Query: 399 cccgaatatctcctcccgagcgatcttcatttcgtccttggcgtcggcaaacaccgtcgg 458
|||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||
Sbjct: 207 cccgaatatctcctcccgagcgatcttcatgtcgtccttagcgtcggcaatcaccgtcgg 148
Query: 459 ctgtatgtagaagcccctttcgcctaccctgtcgccgccggcgacgagggtggcaccgct 518
|||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||
Sbjct: 147 ctgtatgtagaagcccctgctgcctaccctgtcgccgccggtgacgagggtggcgccgct 88
Query: 519 gtcgacgccggactgaacgtaccgcaagatcttgttgaattgctcgccgtcgatctgagg 578
|||||| |||||||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 87 gtcgacaccggactggacgtaccgcaagatcttgttgaactgatcgccgtcgatctgagg 28
Query: 579 cccctgttcgaccccgtccctgaaggg 605
||||||||||||||||| |||||||||
Sbjct: 27 cccctgttcgaccccgttcctgaaggg 1
Score = 42.1 bits (21), Expect = 0.066
Identities = 39/44 (88%), Gaps = 2/44 (4%)
Strand = Plus / Minus
Query: 32 ttgttttattcgtcacgttctc--cgagaaccggcgcagcgccg 73
|||||||||| ||||| ||||| |||||| |||||||||||||
Sbjct: 568 ttgttttattggtcacattctctgcgagaatcggcgcagcgccg 525
>gb|BG556571.1|BG556571 EM1_38_H10.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 527
Score = 803 bits (405), Expect = 0.0
Identities = 483/509 (94%)
Strand = Plus / Minus
Query: 99 ttacagccatgcggggttcttgatgggtgtgacgacggcctttgtctggaggtagttgcg 158
||||||||| ||||||| ||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 509 ttacagccaggcggggtccttgatgggcgtgacgacggccttggtctggaggtagttgcg 450
Query: 159 gagggcgtagatgcccttctcccgcccgacgccgctcatcttgtagccgccgaacgggat 218
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gagggcgtagacgcccttctctcgcccgacgccgctcatcttgtagccgccgaacgggat 390
Query: 219 ggtggcgtcgaacacgtcgtagcagttcacccacacggtgcccgcccgcagcgcccgcga 278
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 389 ggtggcgtcgaacacgtcgtagcagttcacccacaccgtgcccgcccgcagcgcccggga 330
Query: 279 cagggtgttggccgcgtccaggctccgcgtgaacacccccgccgccagcccgtagggcgt 338
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 329 cagcgtgttggccgcgtccaggctccgcgtgaacacccccgccgccagcccgtagtgcgt 270
Query: 339 cgcgttcgcgcgccggatcacctcctccacgccgctgaacttgagaatggtttgcaccgg 398
||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||
Sbjct: 269 cgcgttcgcgcgccggatcacctcctccatgccgctgaacttgaggatggtctgcaccgg 210
Query: 399 cccgaatatctcctcccgagcgatcttcatttcgtccttggcgtcggcaaacaccgtcgg 458
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 209 cccgaatatctcctcccgagcgatcttcatgtcgtccttggcgtcggcaaacaccgtcgg 150
Query: 459 ctgtatgtagaagcccctttcgcctaccctgtcgccgccggcgacgagggtggcaccgct 518
||||||||| |||||||| |||||||||||||||||||| |||||||||||| |||||
Sbjct: 149 ctgtatgtataagcccctgctgcctaccctgtcgccgccggtgacgagggtggcgccgct 90
Query: 519 gtcgacgccggactgaacgtaccgcaagatcttgttgaattgctcgccgtcgatctgagg 578
|||||| |||||||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 89 gtcgacaccggactggacgtaccgcaagatcttgttgaactgatcgccgtcgatctgagg 30
Query: 579 cccctgttcgaccccgtccctgaaggggt 607
||||||||||||||||| |||||| ||||
Sbjct: 29 cccctgttcgaccccgttcctgaacgggt 1
>gb|DN551903.1|DN551903 pSPR-RT-MR-H1_F09_S174 pSPR Sorghum propinquum cDNA, mRNA sequence
Length = 798
Score = 781 bits (394), Expect = 0.0
Identities = 463/486 (95%)
Strand = Plus / Plus
Query: 99 ttacagccatgcggggttcttgatgggtgtgacgacggcctttgtctggaggtagttgcg 158
||||||||| ||||||| ||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 313 ttacagccaggcggggtccttgatgggcgtgacgacggccttggtctggaggtagttgcg 372
Query: 159 gagggcgtagatgcccttctcccgcccgacgccgctcatcttgtagccgccgaacgggat 218
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gagggcgtagacgcccttctcccgcccgacgccgctcatcttgtagccgccgaacgggat 432
Query: 219 ggtggcgtcgaacacgtcgtagcagttcacccacacggtgcccgcccgcagcgcccgcga 278
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 433 ggtggcgtcgaacacgtcgtagcagttcacccacaccgtgcccgcccgcagcgcccggga 492
Query: 279 cagggtgttggccgcgtccaggctccgcgtgaacacccccgccgccagcccgtagggcgt 338
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 493 cagcgtgttggccgcgtccaggctccgcgtgaacacccccgccgccagcccgtagtgcgt 552
Query: 339 cgcgttcgcgcgccggatcacctcctccacgccgctgaacttgagaatggtttgcaccgg 398
||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||
Sbjct: 553 cgcgttcgcgcgccggatcacctcctccatgccgctgaacttgaggatggtctgcaccgg 612
Query: 399 cccgaatatctcctcccgagcgatcttcatttcgtccttggcgtcggcaaacaccgtcgg 458
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 613 cccgaatatctcctcccgagcgatcttcatgtcgtccttagcgtcggcaaacaccgtcgg 672
Query: 459 ctgtatgtagaagcccctttcgcctaccctgtcgccgccggcgacgagggtggcaccgct 518
|||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||
Sbjct: 673 ctgtatgtagaagcccctgctgcctaccctgtcgccgccggtgacgagggtggcgccgct 732
Query: 519 gtcgacgccggactgaacgtaccgcaagatcttgttgaattgctcgccgtcgatctgagg 578
|||||| |||||||| || |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 733 gtcgacaccggactggacataccgcaagatcttgttgaactgctcgccgtcgatctgagg 792
Query: 579 cccctg 584
||||||
Sbjct: 793 cccctg 798
Score = 42.1 bits (21), Expect = 0.066
Identities = 39/44 (88%), Gaps = 2/44 (4%)
Strand = Plus / Plus
Query: 32 ttgttttattcgtcacgttctc--cgagaaccggcgcagcgccg 73
|||||||||| ||||| ||||| |||||| |||||||||||||
Sbjct: 252 ttgttttattggtcacattctctgcgagaatcggcgcagcgccg 295
>gb|BG049524.1|BG049524 EM1_5_B08.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 548
Score = 777 bits (392), Expect = 0.0
Identities = 461/484 (95%)
Strand = Plus / Minus
Query: 99 ttacagccatgcggggttcttgatgggtgtgacgacggcctttgtctggaggtagttgcg 158
||||||||| ||||||| ||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 484 ttacagccaggcggggtccttgatgggcgtgacgacggccttggtctggaggtagttgcg 425
Query: 159 gagggcgtagatgcccttctcccgcccgacgccgctcatcttgtagccgccgaacgggat 218
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gagggcgtagacgcccttctctcgcccgacgccgctcatcttgtagccgccgaacgggat 365
Query: 219 ggtggcgtcgaacacgtcgtagcagttcacccacacggtgcccgcccgcagcgcccgcga 278
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 364 ggtggcgtcgaacacgtcgtagcagttcacccacaccgtgcccgcccgcagcgcccggga 305
Query: 279 cagggtgttggccgcgtccaggctccgcgtgaacacccccgccgccagcccgtagggcgt 338
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 304 cagcgtgttggccgcgtccaggctccgcgtgaacacccccgccgccagcccgtagtgcgt 245
Query: 339 cgcgttcgcgcgccggatcacctcctccacgccgctgaacttgagaatggtttgcaccgg 398
||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||
Sbjct: 244 cgcgttcgcgcgccggatcacctcctccatgccgctgaacttgaggatggtctgcaccgg 185
Query: 399 cccgaatatctcctcccgagcgatcttcatttcgtccttggcgtcggcaaacaccgtcgg 458
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 184 cccgaatatctcctcccgagcgatcttcatgtcgtccttggcgtcggcaaacaccgtcgg 125
Query: 459 ctgtatgtagaagcccctttcgcctaccctgtcgccgccggcgacgagggtggcaccgct 518
|||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||
Sbjct: 124 ctgtatgtagaagcccctgctgcctaccctgtcgccgccggtgacgagggtggcgccgct 65
Query: 519 gtcgacgccggactgaacgtaccgcaagatcttgttgaattgctcgccgtcgatctgagg 578
|||||| |||||||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 64 gtcgacaccggactggacgtaccgcaagatcttgttgaactgatcgccgtcgatctgagg 5
Query: 579 cccc 582
||||
Sbjct: 4 cccc 1
>gb|AW681193.1|AW681193 WS1_9_D05.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 547
Score = 769 bits (388), Expect = 0.0
Identities = 457/480 (95%)
Strand = Plus / Minus
Query: 99 ttacagccatgcggggttcttgatgggtgtgacgacggcctttgtctggaggtagttgcg 158
||||||||| ||||||| ||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 480 ttacagccaggcggggtccttgatgggcgtgacgacggccttggtctggaggtagttgcg 421
Query: 159 gagggcgtagatgcccttctcccgcccgacgccgctcatcttgtagccgccgaacgggat 218
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gagggcgtagacgcccttctctcgcccgacgccgctcatcttgtagccgccgaacgggat 361
Query: 219 ggtggcgtcgaacacgtcgtagcagttcacccacacggtgcccgcccgcagcgcccgcga 278
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 360 ggtggcgtcgaacacgtcgtagcagttcacccacaccgtgcccgcccgcagcgcccggga 301
Query: 279 cagggtgttggccgcgtccaggctccgcgtgaacacccccgccgccagcccgtagggcgt 338
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 300 cagcgtgttggccgcgtccaggctccgcgtgaacacccccgccgccagcccgtagtgcgt 241
Query: 339 cgcgttcgcgcgccggatcacctcctccacgccgctgaacttgagaatggtttgcaccgg 398
||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||
Sbjct: 240 cgcgttcgcgcgccggatcacctcctccatgccgctgaacttgaggatggtctgcaccgg 181
Query: 399 cccgaatatctcctcccgagcgatcttcatttcgtccttggcgtcggcaaacaccgtcgg 458
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 180 cccgaatatctcctcccgagcgatcttcatgtcgtccttggcgtcggcaaacaccgtcgg 121
Query: 459 ctgtatgtagaagcccctttcgcctaccctgtcgccgccggcgacgagggtggcaccgct 518
|||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||
Sbjct: 120 ctgtatgtagaagcccctgctgcctaccctgtcgccgccggtgacgagggtggcgccgct 61
Query: 519 gtcgacgccggactgaacgtaccgcaagatcttgttgaattgctcgccgtcgatctgagg 578
|||||| |||||||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 60 gtcgacaccggactggacgtaccgcaagatcttgttgaactgatcgccgtcgatctgagg 1
Score = 42.1 bits (21), Expect = 0.066
Identities = 39/44 (88%), Gaps = 2/44 (4%)
Strand = Plus / Minus
Query: 32 ttgttttattcgtcacgttctc--cgagaaccggcgcagcgccg 73
|||||||||| ||||| ||||| |||||| |||||||||||||
Sbjct: 541 ttgttttattggtcacattctctgcgagaatcggcgcagcgccg 498
>gb|CD205748.1|CD205748 HS1_18_E05.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_18_E05_A012 3', mRNA sequence
Length = 541
Score = 751 bits (379), Expect = 0.0
Identities = 451/475 (94%)
Strand = Plus / Minus
Query: 99 ttacagccatgcggggttcttgatgggtgtgacgacggcctttgtctggaggtagttgcg 158
||||||||| ||||||| ||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 475 ttacagccaggcggggtccttgatgggcgtgacgacggccttggtctggaggtagttgcg 416
Query: 159 gagggcgtagatgcccttctcccgcccgacgccgctcatcttgtagccgccgaacgggat 218
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gagggcgtagacgcccttctcccgcccgacgccgctcatcttgtagccgccgaacgggat 356
Query: 219 ggtggcgtcgaacacgtcgtagcagttcacccacacggtgcccgcccgcagcgcccgcga 278
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 355 ggtggcgtcgaacacgtcgtagcagttcacccacaccgtgcccgcccgcagcgcccggga 296
Query: 279 cagggtgttggccgcgtccaggctccgcgtgaacacccccgccgccagcccgtagggcgt 338
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 295 cagcgtgttggccgcgtccaggctccgcgtgaacacccccgccgccagcccgtagtgcgt 236
Query: 339 cgcgttcgcgcgccggatcacctcctccacgccgctgaacttgagaatggtttgcaccgg 398
||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||
Sbjct: 235 cgcgttcgcgcgccggatcacctcctccatgccgctgaacttgaggatggtctgcaccgg 176
Query: 399 cccgaatatctcctcccgagcgatcttcatttcgtccttggcgtcggcaaacaccgtcgg 458
|||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||
Sbjct: 175 cccgaatatctcctcccgagcgatcttcatgtcgtccttagcgtcggcaatcaccgtcgg 116
Query: 459 ctgtatgtagaagcccctttcgcctaccctgtcgccgccggcgacgagggtggcaccgct 518
|||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||
Sbjct: 115 ctgtatgtagaagcccctgctgcctaccctgtcgccgccggtgacgagggtggcgccgct 56
Query: 519 gtcgacgccggactgaacgtaccgcaagatcttgttgaattgctcgccgtcgatc 573
|||||| |||||||| ||||||||||||||||||||||| || ||||||||||||
Sbjct: 55 gtcgacaccggactggacgtaccgcaagatcttgttgaactgatcgccgtcgatc 1
Score = 42.1 bits (21), Expect = 0.066
Identities = 39/44 (88%), Gaps = 2/44 (4%)
Strand = Plus / Minus
Query: 32 ttgttttattcgtcacgttctc--cgagaaccggcgcagcgccg 73
|||||||||| ||||| ||||| |||||| |||||||||||||
Sbjct: 536 ttgttttattggtcacattctctgcgagaatcggcgcagcgccg 493
>gb|CD224755.1|CD224755 CCC1_36_C01.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_36_C01_A007 3', mRNA sequence
Length = 533
Score = 743 bits (375), Expect = 0.0
Identities = 438/459 (95%)
Strand = Plus / Minus
Query: 99 ttacagccatgcggggttcttgatgggtgtgacgacggcctttgtctggaggtagttgcg 158
||||||||| ||||||| ||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 466 ttacagccaggcggggtccttgatgggcgtgacgacggccttggtctggaggtagttgcg 407
Query: 159 gagggcgtagatgcccttctcccgcccgacgccgctcatcttgtagccgccgaacgggat 218
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gagggcgtagacgcccttctctcgcccgacgccgctcatcttgtagccgccgaacgggat 347
Query: 219 ggtggcgtcgaacacgtcgtagcagttcacccacacggtgcccgcccgcagcgcccgcga 278
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 346 ggtggcgtcgaacacgtcgtagcagttcacccacaccgtgcccgcccgcagcgcccggga 287
Query: 279 cagggtgttggccgcgtccaggctccgcgtgaacacccccgccgccagcccgtagggcgt 338
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 286 cagcgtgttggccgcgtccaggctccgcgtgaacacccccgccgccagcccgtagtgcgt 227
Query: 339 cgcgttcgcgcgccggatcacctcctccacgccgctgaacttgagaatggtttgcaccgg 398
||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||
Sbjct: 226 cgcgttcgcgcgccggatcacctcctccatgccgctgaacttgaggatggtctgcaccgg 167
Query: 399 cccgaatatctcctcccgagcgatcttcatttcgtccttggcgtcggcaaacaccgtcgg 458
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 166 cccgaatatctcctcccgagcgatcttcatgtcgtccttggcgtcggcaaacaccgtcgg 107
Query: 459 ctgtatgtagaagcccctttcgcctaccctgtcgccgccggcgacgagggtggcaccgct 518
|||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||
Sbjct: 106 ctgtatgtagaagcccctgctgcctaccctgtcgccgccggtgacgagggtggcgccgct 47
Query: 519 gtcgacgccggactgaacgtaccgcaagatcttgttgaa 557
|||||| |||||||| |||||||||||||||||||||||
Sbjct: 46 gtcgacaccggactggacgtaccgcaagatcttgttgaa 8
Score = 42.1 bits (21), Expect = 0.066
Identities = 39/44 (88%), Gaps = 2/44 (4%)
Strand = Plus / Minus
Query: 32 ttgttttattcgtcacgttctc--cgagaaccggcgcagcgccg 73
|||||||||| ||||| ||||| |||||| |||||||||||||
Sbjct: 527 ttgttttattggtcacattctctgcgagaatcggcgcagcgccg 484
>gb|BE359607.1|BE359607 DG1_54_F08.g2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 383
Score = 624 bits (315), Expect = e-177
Identities = 366/383 (95%)
Strand = Plus / Minus
Query: 196 atcttgtagccgccgaacgggatggtggcgtcgaacacgtcgtagcagttcacccacacg 255
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 atcttgtagccgccgaacgggatggtggcgtcgaacacgtcgtagcagttcacccacacc 324
Query: 256 gtgcccgcccgcagcgcccgcgacagggtgttggccgcgtccaggctccgcgtgaacacc 315
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 323 gtgcccgcccgcagcgcccgggacagcgtgttggccgcgtccaggctccgcgtgaacacc 264
Query: 316 cccgccgccagcccgtagggcgtcgcgttcgcgcgccggatcacctcctccacgccgctg 375
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 263 cccgccgccagcccgtagtgcgtcgcgttcgcgcgccggatcacctcctccatgccgctg 204
Query: 376 aacttgagaatggtttgcaccggcccgaatatctcctcccgagcgatcttcatttcgtcc 435
|||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 203 aacttgaggatggtctgcaccggcccgaatatctcctcccgagcgatcttcatgtcgtcc 144
Query: 436 ttggcgtcggcaaacaccgtcggctgtatgtagaagcccctttcgcctaccctgtcgccg 495
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 143 ttggcgtcggcaaacaccgtcggctgtatgtagaagcccctgctgcctaccctgtcgccg 84
Query: 496 ccggcgacgagggtggcaccgctgtcgacgccggactgaacgtaccgcaagatcttgttg 555
|||| |||||||||||| ||||||||||| |||||||| || ||||||||||||||||||
Sbjct: 83 ccggtgacgagggtggcgccgctgtcgacaccggactggacataccgcaagatcttgttg 24
Query: 556 aattgctcgccgtcgatctgagg 578
|| ||||||||||||||||||||
Sbjct: 23 aactgctcgccgtcgatctgagg 1
>gb|BE356776.1|BE356776 DG1_12_H04.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 374
Score = 591 bits (298), Expect = e-167
Identities = 352/370 (95%)
Strand = Plus / Minus
Query: 245 tcacccacacggtgcccgcccgcagcgcccgcgacagggtgttggccgcgtccaggctcc 304
|||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 374 tcacccacaccgtgcccgcccgcagcgcccgggacagcgtgttggccgcgtccaggctcc 315
Query: 305 gcgtgaacacccccgccgccagcccgtagggcgtcgcgttcgcgcgccggatcacctcct 364
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 314 gcgtgaacacccccgccgccagcccgtagtgcgtcgcgttcgcgcgccggatcacctcct 255
Query: 365 ccacgccgctgaacttgagaatggtttgcaccggcccgaatatctcctcccgagcgatct 424
||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 254 ccatgccgctgaacttgaggatggtctgcaccggcccgaatatctcctcccgagcgatct 195
Query: 425 tcatttcgtccttggcgtcggcaaacaccgtcggctgtatgtagaagcccctttcgccta 484
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 194 tcatgtcgtccttggcgtcggcaaacaccgtcggctgtatgtagaagcccctgctgccta 135
Query: 485 ccctgtcgccgccggcgacgagggtggcaccgctgtcgacgccggactgaacgtaccgca 544
||||||||||||||| |||||||||||| ||||||||||| |||||||| ||||||||||
Sbjct: 134 ccctgtcgccgccggtgacgagggtggcgccgctgtcgacaccggactggacgtaccgca 75
Query: 545 agatcttgttgaattgctcgccgtcgatctgaggcccctgttcgaccccgtccctgaagg 604
||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 74 agatcttgttgaactgatcgccgtcgatctgaggcccctgttcgaccccgttcctgaagg 15
Query: 605 ggtcgccgac 614
||||||||||
Sbjct: 14 ggtcgccgac 5
>gb|BE362316.1|BE362316 DG1_85_C07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 381
Score = 589 bits (297), Expect = e-166
Identities = 361/381 (94%), Gaps = 1/381 (0%)
Strand = Plus / Minus
Query: 270 cgcccgcgacagggtgttggccgcgtccaggctccgcgtgaacacccccgccgccagccc 329
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgcccgggacagcgtgttggccgcgtccaggctccgcgtgaacacccccgccgccagccc 322
Query: 330 gtagggcgtcgcgttcgcgcgccggatcacctcctccacgccgctgaacttgagaatggt 389
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 321 gtagtgcgtcgcgttcgcgcgccggatcacctcctccatgccgctgaacttgaggatggt 262
Query: 390 ttgcaccggcccgaatatctcctcccgagcgatcttcatttcgtccttggcgtcggcaaa 449
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 ctgcaccggcccgaatatctcctcccgagcgatcttcatgtcgtccttggcgtcggcaaa 202
Query: 450 caccgtcggctgtatgtagaagcccctttcgcctaccctgtcgccgccggcgacgagggt 509
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 201 caccgtcggctgtatgtagaagcccctgctgcctaccctgtcgccgccggtgacgagggt 142
Query: 510 ggcaccgctgtcgacgccggactgaacgtaccgcaagatcttgttgaattgctcgccgtc 569
||| ||||||||||| |||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 141 ggcgccgctgtcgacaccggactggacgtaccgcaagatcttgttgaactgatcgccgtc 82
Query: 570 gatctgaggcccctgttcgaccccgtccctgaaggggtcgccgacgacgcgctt-agggc 628
|||||||||||||||||||||||||| |||||| ||||||||||| |||||||| |||||
Sbjct: 81 gatctgaggcccctgttcgaccccgttcctgaaagggtcgccgaccacgcgcttcagggc 22
Query: 629 gcgggccttggacttctccac 649
|||||||||||||||||||||
Sbjct: 21 gcgggccttggacttctccac 1
>gb|BG355625.1|BG355625 EM1_16_B06.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 381
Score = 567 bits (286), Expect = e-160
Identities = 349/370 (94%)
Strand = Plus / Minus
Query: 245 tcacccacacggtgcccgcccgcagcgcccgcgacagggtgttggccgcgtccaggctcc 304
|||||||||| |||||||||||||||||||| ||||| |||||||||||||||| |||||
Sbjct: 374 tcacccacaccgtgcccgcccgcagcgcccgggacagcgtgttggccgcgtccacgctcc 315
Query: 305 gcgtgaacacccccgccgccagcccgtagggcgtcgcgttcgcgcgccggatcacctcct 364
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 314 gcgtgaacacccccgccgccagcccgtagtgcgtcgcgttcgcgcgccggatcacctcct 255
Query: 365 ccacgccgctgaacttgagaatggtttgcaccggcccgaatatctcctcccgagcgatct 424
||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 254 ccatgccgctgaacttgaggatggtctgcaccggcccgaatatctcctcccgagcgatct 195
Query: 425 tcatttcgtccttggcgtcggcaaacaccgtcggctgtatgtagaagcccctttcgccta 484
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 194 tcatgtcgtccttggcgtcggcaaacaccgtcggctgtatgtagaagcccctgctgccta 135
Query: 485 ccctgtcgccgccggcgacgagggtggcaccgctgtcgacgccggactgaacgtaccgca 544
||||||||||||||| ||| |||||||| ||||||||||| |||||||| ||||||||||
Sbjct: 134 ccctgtcgccgccggtgactagggtggcgccgctgtcgacaccggactggacgtaccgca 75
Query: 545 agatcttgttgaattgctcgccgtcgatctgaggcccctgttcgaccccgtccctgaagg 604
||||||||||||| || |||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 74 agatcttgttgaactgatcgccgtcgatctgaggcccctgttctaccccgttcctgaagg 15
Query: 605 ggtcgccgac 614
||||||||||
Sbjct: 14 ggtcgccgac 5
>gb|BE356736.1|BE356736 DG1_12_H04.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 464
Score = 565 bits (285), Expect = e-159
Identities = 340/357 (95%), Gaps = 1/357 (0%)
Strand = Plus / Minus
Query: 324 cagcccgtagggcgtcgcgttcgcgcgccggatcacctcctccacgccgctgaacttgag 383
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 464 cagcccgtagtgcgtcgcgttcgcgcgccggatcacctcctccatgccgctgaacttgag 405
Query: 384 aatggtttgcaccggcccgaatatctcctcccgagcgatcttcatttcgtccttggcgtc 443
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 404 gatggtctgcaccggcccgaatatctcctcccgagcgatcttcatgtcgtccttggcgtc 345
Query: 444 ggcaaacaccgtcggctgtatgtagaagcccctttcgcctaccctgtcgccgccggcgac 503
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 344 ggcaaacaccgtcggctgtatgtagaagcccctgctgcctaccctgtcgccgccggtgac 285
Query: 504 gagggtggcaccgctgtcgacgccggactgaacgtaccgcaagatcttgttgaattgctc 563
||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| || ||
Sbjct: 284 gagggtggcgccgctgtcgacaccggactggacgtaccgcaagatcttgttgaactgatc 225
Query: 564 gccgtcgatctgaggcccctgttcgaccccgtccctgaaggggtcgccgacgacgcgctt 623
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 224 gccgtcgatctgaggcccctgttcgaccccgttcctgaaggggtcgccgaccacgcgctt 165
Query: 624 -agggcgcgggccttggacttctccacgaactcgtcgtacacgcgctcgtgcacgaa 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 cagggcgcgggccttggacttctccacgaactcgtcgtacacgcgctcgtgcacgaa 108
>gb|CW317755.1|CW317755 104_809_11473583_116_35861_086 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11473583, DNA
sequence
Length = 703
Score = 462 bits (233), Expect = e-128
Identities = 266/277 (96%)
Strand = Plus / Minus
Query: 99 ttacagccatgcggggttcttgatgggtgtgacgacggcctttgtctggaggtagttgcg 158
||||||||| ||||||| ||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 505 ttacagccaggcggggtccttgatgggcgtgacgacggccttggtctggaggtagttgcg 446
Query: 159 gagggcgtagatgcccttctcccgcccgacgccgctcatcttgtagccgccgaacgggat 218
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gagggcgtagacgcccttctctcgcccgacgccgctcatcttgtagccgccgaacgggat 386
Query: 219 ggtggcgtcgaacacgtcgtagcagttcacccacacggtgcccgcccgcagcgcccgcga 278
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 385 ggtggcgtcgaacacgtcgtagcagttcacccacaccgtgcccgcccgcagcgcccggga 326
Query: 279 cagggtgttggccgcgtccaggctccgcgtgaacacccccgccgccagcccgtagggcgt 338
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 325 cagcgtgttggccgcgtccaggctccgcgtgaacacccccgccgccagcccgtagtgcgt 266
Query: 339 cgcgttcgcgcgccggatcacctcctccacgccgctg 375
||||||||||||||||||||||||||||| |||||||
Sbjct: 265 cgcgttcgcgcgccggatcacctcctccatgccgctg 229
Score = 103 bits (52), Expect = 2e-020
Identities = 61/64 (95%)
Strand = Plus / Minus
Query: 373 ctgaacttgagaatggtttgcaccggcccgaatatctcctcccgagcgatcttcatttcg 432
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 116 ctgaacttgaggatggtctgcaccggcccgaatatctcctcccgagcgatcttcatgtcg 57
Query: 433 tcct 436
||||
Sbjct: 56 tcct 53
Score = 42.1 bits (21), Expect = 0.066
Identities = 39/44 (88%), Gaps = 2/44 (4%)
Strand = Plus / Minus
Query: 32 ttgttttattcgtcacgttctc--cgagaaccggcgcagcgccg 73
|||||||||| ||||| ||||| |||||| |||||||||||||
Sbjct: 566 ttgttttattggtcacattctctgcgagaatcggcgcagcgccg 523
>gb|CW317757.1|CW317757 104_809_11473584_116_35862_086 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11473584, DNA
sequence
Length = 688
Score = 462 bits (233), Expect = e-128
Identities = 266/277 (96%)
Strand = Plus / Minus
Query: 99 ttacagccatgcggggttcttgatgggtgtgacgacggcctttgtctggaggtagttgcg 158
||||||||| ||||||| ||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 505 ttacagccaggcggggtccttgatgggcgtgacgacggccttggtctggaggtagttgcg 446
Query: 159 gagggcgtagatgcccttctcccgcccgacgccgctcatcttgtagccgccgaacgggat 218
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gagggcgtagacgcccttctctcgcccgacgccgctcatcttgtagccgccgaacgggat 386
Query: 219 ggtggcgtcgaacacgtcgtagcagttcacccacacggtgcccgcccgcagcgcccgcga 278
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 385 ggtggcgtcgaacacgtcgtagcagttcacccacaccgtgcccgcccgcagcgcccggga 326
Query: 279 cagggtgttggccgcgtccaggctccgcgtgaacacccccgccgccagcccgtagggcgt 338
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 325 cagcgtgttggccgcgtccaggctccgcgtgaacacccccgccgccagcccgtagtgcgt 266
Query: 339 cgcgttcgcgcgccggatcacctcctccacgccgctg 375
||||||||||||||||||||||||||||| |||||||
Sbjct: 265 cgcgttcgcgcgccggatcacctcctccatgccgctg 229
Score = 103 bits (52), Expect = 2e-020
Identities = 61/64 (95%)
Strand = Plus / Minus
Query: 373 ctgaacttgagaatggtttgcaccggcccgaatatctcctcccgagcgatcttcatttcg 432
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 116 ctgaacttgaggatggtctgcaccggcccgaatatctcctcccgagcgatcttcatgtcg 57
Query: 433 tcct 436
||||
Sbjct: 56 tcct 53
Score = 42.1 bits (21), Expect = 0.066
Identities = 39/44 (88%), Gaps = 2/44 (4%)
Strand = Plus / Minus
Query: 32 ttgttttattcgtcacgttctc--cgagaaccggcgcagcgccg 73
|||||||||| ||||| ||||| |||||| |||||||||||||
Sbjct: 566 ttgttttattggtcacattctctgcgagaatcggcgcagcgccg 523
>gb|CW424062.1|CW424062 fsbb001f134d10f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f134d10, DNA
sequence
Length = 611
Score = 462 bits (233), Expect = e-128
Identities = 266/277 (96%)
Strand = Plus / Plus
Query: 99 ttacagccatgcggggttcttgatgggtgtgacgacggcctttgtctggaggtagttgcg 158
||||||||| ||||||| ||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 86 ttacagccaggcggggtccttgatgggcgtgacgacggccttggtctggaggtagttgcg 145
Query: 159 gagggcgtagatgcccttctcccgcccgacgccgctcatcttgtagccgccgaacgggat 218
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 146 gagggcgtagacgcccttctctcgcccgacgccgctcatcttgtagccgccgaacgggat 205
Query: 219 ggtggcgtcgaacacgtcgtagcagttcacccacacggtgcccgcccgcagcgcccgcga 278
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 206 ggtggcgtcgaacacgtcgtagcagttcacccacaccgtgcccgcccgcagcgcccggga 265
Query: 279 cagggtgttggccgcgtccaggctccgcgtgaacacccccgccgccagcccgtagggcgt 338
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 266 cagcgtgttggccgcgtccaggctccgcgtgaacacccccgccgccagcccgtagtgcgt 325
Query: 339 cgcgttcgcgcgccggatcacctcctccacgccgctg 375
||||||||||||||||||||||||||||| |||||||
Sbjct: 326 cgcgttcgcgcgccggatcacctcctccatgccgctg 362
Score = 95.6 bits (48), Expect = 5e-018
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 373 ctgaacttgagaatggtttgcaccggcccgaatatctcctcccgagcgatcttcatttcg 432
||||||||||| ||||| |||||||||||||||||||||||||||||||||||| | |||
Sbjct: 475 ctgaacttgaggatggtctgcaccggcccgaatatctcctcccgagcgatcttcctgtcg 534
Query: 433 tcct 436
||||
Sbjct: 535 tcct 538
Score = 42.1 bits (21), Expect = 0.066
Identities = 39/44 (88%), Gaps = 2/44 (4%)
Strand = Plus / Plus
Query: 32 ttgttttattcgtcacgttctc--cgagaaccggcgcagcgccg 73
|||||||||| ||||| ||||| |||||| |||||||||||||
Sbjct: 25 ttgttttattggtcacattctctgcgagaatcggcgcagcgccg 68
>gb|BE593873.1|BE593873 WS1_103_D07.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 336
Score = 462 bits (233), Expect = e-128
Identities = 266/277 (96%)
Strand = Plus / Minus
Query: 99 ttacagccatgcggggttcttgatgggtgtgacgacggcctttgtctggaggtagttgcg 158
||||||||| ||||||| ||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 306 ttacagccaggcggggtccttgatgggcgtgacgacggccttggtctggaggtagttgcg 247
Query: 159 gagggcgtagatgcccttctcccgcccgacgccgctcatcttgtagccgccgaacgggat 218
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gagggcgtagacgcccttctctcgcccgacgccgctcatcttgtagccgccgaacgggat 187
Query: 219 ggtggcgtcgaacacgtcgtagcagttcacccacacggtgcccgcccgcagcgcccgcga 278
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 186 ggtggcgtcgaacacgtcgtagcagttcacccacaccgtgcccgcccgcagcgcccggga 127
Query: 279 cagggtgttggccgcgtccaggctccgcgtgaacacccccgccgccagcccgtagggcgt 338
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 126 cagcgtgttggccgcgtccaggctccgcgtgaacacccccgccgccagcccgtagtgcgt 67
Query: 339 cgcgttcgcgcgccggatcacctcctccacgccgctg 375
||||||||||||||||||||||||||||| |||||||
Sbjct: 66 cgcgttcgcgcgccggatcacctcctccatgccgctg 30
>gb|BE594190.1|BE594190 WS1_103_D07.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 394
Score = 462 bits (233), Expect = e-128
Identities = 266/277 (96%)
Strand = Plus / Minus
Query: 99 ttacagccatgcggggttcttgatgggtgtgacgacggcctttgtctggaggtagttgcg 158
||||||||| ||||||| ||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 306 ttacagccaggcggggtccttgatgggcgtgacgacggccttggtctggaggtagttgcg 247
Query: 159 gagggcgtagatgcccttctcccgcccgacgccgctcatcttgtagccgccgaacgggat 218
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gagggcgtagacgcccttctctcgcccgacgccgctcatcttgtagccgccgaacgggat 187
Query: 219 ggtggcgtcgaacacgtcgtagcagttcacccacacggtgcccgcccgcagcgcccgcga 278
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 186 ggtggcgtcgaacacgtcgtagcagttcacccacaccgtgcccgcccgcagcgcccggga 127
Query: 279 cagggtgttggccgcgtccaggctccgcgtgaacacccccgccgccagcccgtagggcgt 338
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 126 cagcgtgttggccgcgtccaggctccgcgtgaacacccccgccgccagcccgtagtgcgt 67
Query: 339 cgcgttcgcgcgccggatcacctcctccacgccgctg 375
||||||||||||||||||||||||||||| |||||||
Sbjct: 66 cgcgttcgcgcgccggatcacctcctccatgccgctg 30
Score = 42.1 bits (21), Expect = 0.066
Identities = 39/44 (88%), Gaps = 2/44 (4%)
Strand = Plus / Minus
Query: 32 ttgttttattcgtcacgttctc--cgagaaccggcgcagcgccg 73
|||||||||| ||||| ||||| |||||| |||||||||||||
Sbjct: 367 ttgttttattggtcacattctctgcgagaatcggcgcagcgccg 324
>gb|BZ368348.1|BZ368348 id12g11.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone id12g11 5', DNA sequence
Length = 374
Score = 454 bits (229), Expect = e-126
Identities = 265/277 (95%)
Strand = Plus / Minus
Query: 99 ttacagccatgcggggttcttgatgggtgtgacgacggcctttgtctggaggtagttgcg 158
||||||||| ||||||| ||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 329 ttacagccaggcggggtccttgatgggcgtgacgacggccttggtctggaggtagttgcg 270
Query: 159 gagggcgtagatgcccttctcccgcccgacgccgctcatcttgtagccgccgaacgggat 218
||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gagggcgtagacgcctttctctcgcccgacgccgctcatcttgtagccgccgaacgggat 210
Query: 219 ggtggcgtcgaacacgtcgtagcagttcacccacacggtgcccgcccgcagcgcccgcga 278
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 209 ggtggcgtcgaacacgtcgtagcagttcacccacaccgtgcccgcccgcagcgcccggga 150
Query: 279 cagggtgttggccgcgtccaggctccgcgtgaacacccccgccgccagcccgtagggcgt 338
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 149 cagcgtgttggccgcgtccaggctccgcgtgaacacccccgccgccagcccgtagtgcgt 90
Query: 339 cgcgttcgcgcgccggatcacctcctccacgccgctg 375
||||||||||||||||||||||||||||| |||||||
Sbjct: 89 cgcgttcgcgcgccggatcacctcctccatgccgctg 53
>gb|BE125651.1|BE125651 DG1_54_F08.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 331
Score = 244 bits (123), Expect = 9e-063
Identities = 139/143 (97%), Gaps = 1/143 (0%)
Strand = Plus / Minus
Query: 538 taccgcaagatcttgttgaattgctcgccgtcgatctgaggcccctgttcgaccccgtcc 597
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 326 taccgcaagatcttgttgaactgctcgccgtcgatctgaggcccctgttcgaccccgttc 267
Query: 598 ctgaaggggtcgccgacgacgcgctt-agggcgcgggccttggacttctccacgaactcg 656
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 266 ctgaaggggtcgccgaccacgcgcttcagggcgcgggccttggacttctccacgaactcg 207
Query: 657 tcgtacacgcgctcgtgcacgaa 679
|||||||||||||||||||||||
Sbjct: 206 tcgtacacgcgctcgtgcacgaa 184
>gb|BG558573.1|BG558573 RHIZ2_57_F01.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 196
Score = 214 bits (108), Expect = 8e-054
Identities = 123/128 (96%)
Strand = Plus / Minus
Query: 99 ttacagccatgcggggttcttgatgggtgtgacgacggcctttgtctggaggtagttgcg 158
||||||||| ||||||| ||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 128 ttacagccaggcggggtccttgatgggcgtgacgacggccttggtctggaggtagttgcg 69
Query: 159 gagggcgtagatgcccttctcccgcccgacgccgctcatcttgtagccgccgaacgggat 218
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 gagggcgtagacgcccttctcccgcccgacgccgctcatcttgtagccgccgaacgggat 9
Query: 219 ggtggcgt 226
||||||||
Sbjct: 8 ggtggcgt 1
>gb|CW035143.1|CW035143 104_265_10502987_114_30378 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10502987, DNA
sequence
Length = 677
Score = 212 bits (107), Expect = 3e-053
Identities = 134/143 (93%)
Strand = Plus / Plus
Query: 434 ccttggcgtcggcaaacaccgtcggctgtatgtagaagcccctttcgcctaccctgtcgc 493
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 212 ccttggcgtcggcaaacaccgtcggctgtatgtagaagcccctgctgcctaccctgtcgc 271
Query: 494 cgccggcgacgagggtggcaccgctgtcgacgccggactgaacgtaccgcaagatcttgt 553
|||||| |||||||||||| ||||||||||| |||||||| |||||||||||||||||||
Sbjct: 272 cgccggtgacgagggtggcgccgctgtcgacaccggactggacgtaccgcaagatcttgt 331
Query: 554 tgaattgctcgccgtcgatctga 576
|||| || |||||||||||||||
Sbjct: 332 tgaactgatcgccgtcgatctga 354
Score = 182 bits (92), Expect = 3e-044
Identities = 105/108 (97%), Gaps = 1/108 (0%)
Strand = Plus / Plus
Query: 573 ctgaggcccctgttcgaccccgtccctgaaggggtcgccgacgacgcgctt-agggcgcg 631
||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||
Sbjct: 449 ctgaggcccctgttcgaccccgttcctgaaggggtcgccgaccacgcgcttcagggcgcg 508
Query: 632 ggccttggacttctccacgaactcgtcgtacacgcgctcgtgcacgaa 679
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ggccttggacttctccacgaactcgtcgtacacgcgctcgtgcacgaa 556
Score = 103 bits (52), Expect = 2e-020
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 373 ctgaacttgagaatggtttgcaccggcccgaatatctcctcccgagcgatcttcatttcg 432
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 66 ctgaacttgaggatggtctgcaccggcccgaatatctcctcccgagcgatcttcatgtcg 125
Query: 433 tcct 436
||||
Sbjct: 126 tcct 129
>gb|CW241628.1|CW241628 104_700_11218876_148_37543_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11218876, DNA
sequence
Length = 654
Score = 212 bits (107), Expect = 3e-053
Identities = 134/143 (93%)
Strand = Plus / Plus
Query: 434 ccttggcgtcggcaaacaccgtcggctgtatgtagaagcccctttcgcctaccctgtcgc 493
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 222 ccttggcgtcggcaaacaccgtcggctgtatgtagaagcccctgctgcctaccctgtcgc 281
Query: 494 cgccggcgacgagggtggcaccgctgtcgacgccggactgaacgtaccgcaagatcttgt 553
|||||| |||||||||||| ||||||||||| |||||||| |||||||||||||||||||
Sbjct: 282 cgccggtgacgagggtggcgccgctgtcgacaccggactggacgtaccgcaagatcttgt 341
Query: 554 tgaattgctcgccgtcgatctga 576
|||| || |||||||||||||||
Sbjct: 342 tgaactgatcgccgtcgatctga 364
Score = 182 bits (92), Expect = 3e-044
Identities = 105/108 (97%), Gaps = 1/108 (0%)
Strand = Plus / Plus
Query: 573 ctgaggcccctgttcgaccccgtccctgaaggggtcgccgacgacgcgctt-agggcgcg 631
||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||
Sbjct: 459 ctgaggcccctgttcgaccccgttcctgaaggggtcgccgaccacgcgcttcagggcgcg 518
Query: 632 ggccttggacttctccacgaactcgtcgtacacgcgctcgtgcacgaa 679
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ggccttggacttctccacgaactcgtcgtacacgcgctcgtgcacgaa 566
Score = 103 bits (52), Expect = 2e-020
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 373 ctgaacttgagaatggtttgcaccggcccgaatatctcctcccgagcgatcttcatttcg 432
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 76 ctgaacttgaggatggtctgcaccggcccgaatatctcctcccgagcgatcttcatgtcg 135
Query: 433 tcct 436
||||
Sbjct: 136 tcct 139
>gb|CW241627.1|CW241627 104_700_11218876_116_37544_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11218876, DNA
sequence
Length = 624
Score = 182 bits (92), Expect = 3e-044
Identities = 105/108 (97%), Gaps = 1/108 (0%)
Strand = Plus / Minus
Query: 573 ctgaggcccctgttcgaccccgtccctgaaggggtcgccgacgacgcgctt-agggcgcg 631
||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||
Sbjct: 476 ctgaggcccctgttcgaccccgttcctgaaggggtcgccgaccacgcgcttcagggcgcg 417
Query: 632 ggccttggacttctccacgaactcgtcgtacacgcgctcgtgcacgaa 679
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ggccttggacttctccacgaactcgtcgtacacgcgctcgtgcacgaa 369
Score = 69.9 bits (35), Expect = 3e-010
Identities = 47/51 (92%)
Strand = Plus / Minus
Query: 526 ccggactgaacgtaccgcaagatcttgttgaattgctcgccgtcgatctga 576
|||||||| | ||||||||||||||||||||| || |||||||||||||||
Sbjct: 621 ccggactggatgtaccgcaagatcttgttgaactgatcgccgtcgatctga 571
>gb|CW478002.1|CW478002 fsbb001f235k06k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f235k06, DNA
sequence
Length = 558
Score = 182 bits (92), Expect = 3e-044
Identities = 105/108 (97%), Gaps = 1/108 (0%)
Strand = Plus / Plus
Query: 573 ctgaggcccctgttcgaccccgtccctgaaggggtcgccgacgacgcgctt-agggcgcg 631
||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||
Sbjct: 173 ctgaggcccctgttcgaccccgttcctgaaggggtcgccgaccacgcgcttcagggcgcg 232
Query: 632 ggccttggacttctccacgaactcgtcgtacacgcgctcgtgcacgaa 679
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 ggccttggacttctccacgaactcgtcgtacacgcgctcgtgcacgaa 280
Score = 111 bits (56), Expect = 9e-023
Identities = 71/76 (93%)
Strand = Plus / Plus
Query: 501 gacgagggtggcaccgctgtcgacgccggactgaacgtaccgcaagatcttgttgaattg 560
|||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct: 4 gacgagggtggcgccgctgtcgacaccggactggacgtaccgcaagatcttgttgaactg 63
Query: 561 ctcgccgtcgatctga 576
|||||||||||||||
Sbjct: 64 atcgccgtcgatctga 79
>gb|BE125725.1|BE125725 DG1_54_F08.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 206
Score = 168 bits (85), Expect = 4e-040
Identities = 109/117 (93%)
Strand = Plus / Minus
Query: 99 ttacagccatgcggggttcttgatgggtgtgacgacggcctttgtctggaggtagttgcg 158
||||||||| ||||||| ||||||||| |||||||||||||| ||||||| ||| |||||
Sbjct: 117 ttacagccaggcggggtccttgatgggcgtgacgacggccttggtctggaagtaattgcg 58
Query: 159 gagggcgtagatgcccttctcccgcccgacgccgctcatcttgtagccgccgaacgg 215
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57 gagggcgtaaacgcccttctcccgcccgacgccgctcatcttgtagccgccgaacgg 1
Score = 42.1 bits (21), Expect = 0.066
Identities = 39/44 (88%), Gaps = 2/44 (4%)
Strand = Plus / Minus
Query: 32 ttgttttattcgtcacgttctc--cgagaaccggcgcagcgccg 73
|||||||||| ||||| ||||| |||||| |||||||||||||
Sbjct: 178 ttgttttattggtcacattctctgcgagaatcggcgcagcgccg 135
>gb|CB929184.1|CB929184 ABA1_40_B04.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_40_B04_A012 3', mRNA sequence
Length = 152
Score = 137 bits (69), Expect = 1e-030
Identities = 87/93 (93%)
Strand = Plus / Minus
Query: 99 ttacagccatgcggggttcttgatgggtgtgacgacggcctttgtctggaggtagttgcg 158
||||||||| ||||||| ||||||||| |||||||||||||| ||||||||||| |||||
Sbjct: 93 ttacagccaggcggggtccttgatgggcgtgacgacggccttggtctggaggtaattgcg 34
Query: 159 gagggcgtagatgcccttctcccgcccgacgcc 191
||||||||||| |||||||||||||||||||||
Sbjct: 33 gagggcgtagacgcccttctcccgcccgacgcc 1
>gb|CL162019.1|CL162019 104_354_10806128_114_31830_032 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10806128, DNA
sequence
Length = 522
Score = 117 bits (59), Expect = 1e-024
Identities = 69/71 (97%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 610 ccgacgacgcgctt-agggcgcgggccttggacttctccacgaactcgtcgtacacgcgc 668
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccgaccacgcgcttcagggcgcgggccttggacttctccacgaactcgtcgtacacgcgc 60
Query: 669 tcgtgcacgaa 679
|||||||||||
Sbjct: 61 tcgtgcacgaa 71
>gb|AW679042.1|AW679042 WS1_22_G09.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 164
Score = 69.9 bits (35), Expect = 3e-010
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 541 cgcaagatcttgttgaattgctcgccgtcgatctgaggcccctgttcgaccccgtccctg 600
|||||||||||||||||||||||| |||| ||||| || |||||||| || || | ||||
Sbjct: 160 cgcaagatcttgttgaattgctcgtcgtcaatctgcgggccctgttcaacacctttcctg 101
Query: 601 aaggggtcgccgacgacgcgctt 623
|| || || || |||||||||||
Sbjct: 100 aatggatcaccaacgacgcgctt 78
>gb|BM326464.1|BM326464 PIC1_57_D05.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 512
Score = 69.9 bits (35), Expect = 3e-010
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 541 cgcaagatcttgttgaattgctcgccgtcgatctgaggcccctgttcgaccccgtccctg 600
|||||||||||||||||||||||| |||| ||||| || |||||||| || || | ||||
Sbjct: 154 cgcaagatcttgttgaattgctcgtcgtcaatctgcgggccctgttcaacacctttcctg 95
Query: 601 aaggggtcgccgacgacgcgctt 623
|| || || || |||||||||||
Sbjct: 94 aatggatcaccaacgacgcgctt 72
Score = 40.1 bits (20), Expect = 0.26
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 397 ggcccgaatatctcctcccgagcgatcttcat 428
||||| |||||||||||| |||| ||||||||
Sbjct: 298 ggcccaaatatctcctcctgagcaatcttcat 267
>gb|CF485163.1|CF485163 POL1_29_G03.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_29_G03_A002 5', mRNA sequence
Length = 521
Score = 69.9 bits (35), Expect = 3e-010
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 541 cgcaagatcttgttgaattgctcgccgtcgatctgaggcccctgttcgaccccgtccctg 600
|||||||||||||||||||||||| |||| ||||| || |||||||| || || | ||||
Sbjct: 426 cgcaagatcttgttgaattgctcgtcgtcaatctgcgggccctgttcaacacctttcctg 367
Query: 601 aaggggtcgccgacgacgcgctt 623
|| || || || |||||||||||
Sbjct: 366 aatggatcaccaacgacgcgctt 344
>gb|CN131219.1|CN131219 RHOH1_46_D03.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_46_D03_A002 5', mRNA sequence
Length = 804
Score = 69.9 bits (35), Expect = 3e-010
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 541 cgcaagatcttgttgaattgctcgccgtcgatctgaggcccctgttcgaccccgtccctg 600
|||||||||||||||||||||||| |||| ||||| || |||||||| || || | ||||
Sbjct: 669 cgcaagatcttgttgaattgctcgtcgtcaatctgcgggccctgttcaacacctttcctg 610
Query: 601 aaggggtcgccgacgacgcgctt 623
|| || || || |||||||||||
Sbjct: 609 aatggatcaccaacgacgcgctt 587
>dbj|AB084898.1| Sorghum bicolor ALDH2b mRNA for mitochondrial aldehyde dehydrogenase,
complete cds
Length = 2159
Score = 69.9 bits (35), Expect = 3e-010
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 541 cgcaagatcttgttgaattgctcgccgtcgatctgaggcccctgttcgaccccgtccctg 600
|||||||||||||||||||||||| |||| ||||| || |||||||| || || | ||||
Sbjct: 1424 cgcaagatcttgttgaattgctcgtcgtcaatctgcgggccctgttcaacacctttcctg 1365
Query: 601 aaggggtcgccgacgacgcgctt 623
|| || || || |||||||||||
Sbjct: 1364 aatggatcaccaacgacgcgctt 1342
Score = 52.0 bits (26), Expect = 7e-005
Identities = 98/122 (80%)
Strand = Plus / Minus
Query: 169 atgcccttctcccgcccgacgccgctcatcttgtagccgccgaacgggatggtggcgtcg 228
||||||||||||| ||| | ||||||||||||||| || || || || || | || |||
Sbjct: 1796 atgcccttctccctcccaatgccgctcatcttgtacccaccaaagggaattgcagcatcg 1737
Query: 229 aacacgtcgtagcagttcacccacacggtgcccgcccgcagcgcccgcgacagggtgttg 288
|| | |||| ||||||| | ||| ||||| || |||| ||||| |||| ||||||||||
Sbjct: 1736 aagatgtcgaagcagttaatccagacggtcccagccctgagcgcacgcgtcagggtgttg 1677
Query: 289 gc 290
||
Sbjct: 1676 gc 1675
Score = 40.1 bits (20), Expect = 0.26
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 397 ggcccgaatatctcctcccgagcgatcttcat 428
||||| |||||||||||| |||| ||||||||
Sbjct: 1568 ggcccaaatatctcctcctgagcaatcttcat 1537
>gb|BM324286.1|BM324286 PIC1_26_E06.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 507
Score = 63.9 bits (32), Expect = 2e-008
Identities = 70/83 (84%)
Strand = Plus / Minus
Query: 541 cgcaagatcttgttgaattgctcgccgtcgatctgaggcccctgttcgaccccgtccctg 600
|||||||||||||||||||||||| |||| ||||| || |||||||| || || | | ||
Sbjct: 459 cgcaagatcttgttgaattgctcgtcgtcaatctgcgggccctgttcaacacctttcntg 400
Query: 601 aaggggtcgccgacgacgcgctt 623
|| || || || |||||||||||
Sbjct: 399 aatggatcaccaacgacgcgctt 377
>gb|CD204341.1|CD204341 HS1_7_D12.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_7_D12_A012 3', mRNA sequence
Length = 784
Score = 61.9 bits (31), Expect = 7e-008
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 541 cgcaagatcttgttgaattgctcgccgtcgatctgaggcccctgttc 587
|||||||||||||||||||||||| |||| ||||| || ||||||||
Sbjct: 71 cgcaagatcttgttgaattgctcgtcgtcaatctgcgggccctgttc 25
Score = 52.0 bits (26), Expect = 7e-005
Identities = 98/122 (80%)
Strand = Plus / Minus
Query: 169 atgcccttctcccgcccgacgccgctcatcttgtagccgccgaacgggatggtggcgtcg 228
||||||||||||| ||| | ||||||||||||||| || || || || || | || |||
Sbjct: 443 atgcccttctccctcccaatgccgctcatcttgtacccaccaaagggaattgcagcatcg 384
Query: 229 aacacgtcgtagcagttcacccacacggtgcccgcccgcagcgcccgcgacagggtgttg 288
|| | |||| ||||||| | ||| ||||| || |||| ||||| |||| ||||||||||
Sbjct: 383 aagatgtcgaagcagttaatccagacggtcccagccctgagcgcacgcgtcagggtgttg 324
Query: 289 gc 290
||
Sbjct: 323 gc 322
Score = 40.1 bits (20), Expect = 0.26
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 397 ggcccgaatatctcctcccgagcgatcttcat 428
||||| |||||||||||| |||| ||||||||
Sbjct: 215 ggcccaaatatctcctcctgagcaatcttcat 184
>gb|CF760090.1|CF760090 DSAF1_55_D06.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_55_D06_A011 5', mRNA sequence
Length = 406
Score = 61.9 bits (31), Expect = 7e-008
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 541 cgcaagatcttgttgaattgctcgccgtcgatctgaggcccctgttc 587
|||||||||||||||||||||||| |||| ||||| || ||||||||
Sbjct: 74 cgcaagatcttgttgaattgctcgtcgtcaatctgcgggccctgttc 28
Score = 40.1 bits (20), Expect = 0.26
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 397 ggcccgaatatctcctcccgagcgatcttcat 428
||||| |||||||||||| |||| ||||||||
Sbjct: 218 ggcccaaatatctcctcctgagcaatcttcat 187
>gb|CX607177.1|CX607177 ANR1_7_D04.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_7_D04_A002 3', mRNA sequence
Length = 787
Score = 61.9 bits (31), Expect = 7e-008
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 541 cgcaagatcttgttgaattgctcgccgtcgatctgaggcccctgttc 587
|||||||||||||||||||||||| |||| ||||| || ||||||||
Sbjct: 56 cgcaagatcttgttgaattgctcgtcgtcaatctgcgggccctgttc 10
Score = 52.0 bits (26), Expect = 7e-005
Identities = 98/122 (80%)
Strand = Plus / Minus
Query: 169 atgcccttctcccgcccgacgccgctcatcttgtagccgccgaacgggatggtggcgtcg 228
||||||||||||| ||| | ||||||||||||||| || || || || || | || |||
Sbjct: 428 atgcccttctccctcccaatgccgctcatcttgtacccaccaaagggaattgcagcatcg 369
Query: 229 aacacgtcgtagcagttcacccacacggtgcccgcccgcagcgcccgcgacagggtgttg 288
|| | |||| ||||||| | ||| ||||| || |||| ||||| |||| ||||||||||
Sbjct: 368 aagatgtcgaagcagttaatccagacggtcccagccctgagcgcacgcgtcagggtgttg 309
Query: 289 gc 290
||
Sbjct: 308 gc 307
Score = 40.1 bits (20), Expect = 0.26
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 397 ggcccgaatatctcctcccgagcgatcttcat 428
||||| |||||||||||| |||| ||||||||
Sbjct: 200 ggcccaaatatctcctcctgagcaatcttcat 169
>gb|CD205469.1|CD205469 HS1_14_F10.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_14_F10_A012 3', mRNA sequence
Length = 670
Score = 60.0 bits (30), Expect = 3e-007
Identities = 99/122 (81%)
Strand = Plus / Minus
Query: 169 atgcccttctcccgcccgacgccgctcatcttgtagccgccgaacgggatggtggcgtcg 228
||||||||||||| ||| | ||||||||||||||| || || || || || | ||| |||
Sbjct: 333 atgcccttctccctcccaatgccgctcatcttgtacccaccaaagggaattgcggcatcg 274
Query: 229 aacacgtcgtagcagttcacccacacggtgcccgcccgcagcgcccgcgacagggtgttg 288
|| | |||| ||||||| | ||| ||||| || |||| ||||| |||| ||||||||||
Sbjct: 273 aagatgtcgaagcagttaatccagacggtcccagccctgagcgcacgcgtcagggtgttg 214
Query: 289 gc 290
||
Sbjct: 213 gc 212
Score = 40.1 bits (20), Expect = 0.26
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 397 ggcccgaatatctcctcccgagcgatcttcat 428
||||| |||||||||||| |||| ||||||||
Sbjct: 105 ggcccaaatatctcctcctgagcaatcttcat 74
>gb|CL177395.1|CL177395 104_384_10893805_116_31916_253 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10893805, DNA
sequence
Length = 731
Score = 56.0 bits (28), Expect = 4e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 237 gtagcagttcacccacacggtgcccgcccgcagcgcccgcgaca 280
|||||||||||||||||||||||| || |||| || ||||||||
Sbjct: 265 gtagcagttcacccacacggtgccggcgcgcaccgaccgcgaca 308
>gb|CL177396.1|CL177396 104_384_10893805_148_31915_253 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10893805, DNA
sequence
Length = 743
Score = 56.0 bits (28), Expect = 4e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 237 gtagcagttcacccacacggtgcccgcccgcagcgcccgcgaca 280
|||||||||||||||||||||||| || |||| || ||||||||
Sbjct: 595 gtagcagttcacccacacggtgccggcgcgcaccgaccgcgaca 552
>gb|CW137973.1|CW137973 104_525_11119958_148_34875_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11119958, DNA
sequence
Length = 593
Score = 56.0 bits (28), Expect = 4e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 237 gtagcagttcacccacacggtgcccgcccgcagcgcccgcgaca 280
|||||||||||||||||||||||| || |||| || ||||||||
Sbjct: 442 gtagcagttcacccacacggtgccggcgcgcaccgaccgcgaca 485
>gb|CW276375.1|CW276375 104_750_11405455_116_35396_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11405455, DNA
sequence
Length = 691
Score = 56.0 bits (28), Expect = 4e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 237 gtagcagttcacccacacggtgcccgcccgcagcgcccgcgaca 280
|||||||||||||||||||||||| || |||| || ||||||||
Sbjct: 379 gtagcagttcacccacacggtgccggcgcgcaccgaccgcgaca 336
>gb|CW282858.1|CW282858 104_759_11408938_148_35474_045 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11408938, DNA
sequence
Length = 718
Score = 56.0 bits (28), Expect = 4e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 237 gtagcagttcacccacacggtgcccgcccgcagcgcccgcgaca 280
|||||||||||||||||||||||| || |||| || ||||||||
Sbjct: 406 gtagcagttcacccacacggtgccggcgcgcaccgaccgcgaca 363
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 208,864
Number of Sequences: 832831
Number of extensions: 208864
Number of successful extensions: 60091
Number of sequences better than 0.5: 111
Number of HSP's better than 0.5 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59872
Number of HSP's gapped (non-prelim): 183
length of query: 679
length of database: 491,359,669
effective HSP length: 19
effective length of query: 660
effective length of database: 475,535,880
effective search space: 313853680800
effective search space used: 313853680800
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)