BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2619548.2.1
(691 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW678365.1|AW678365 WS1_15_G09.b1_A002 Water-stressed 1 ... 769 0.0
gb|CF769491.1|CF769491 DSBF1_2_B06.b1_A010 Drought-stressed... 745 0.0
gb|AW677286.1|AW677286 DG1_7_A08.b1_A002 Dark Grown 1 (DG1)... 720 0.0
gb|CF769577.1|CF769577 DSBF1_2_B06.g1_A010 Drought-stressed... 712 0.0
gb|CF758026.1|CF758026 DSAF1_26_D04.g1_A011 Drought-stresse... 660 0.0
gb|AW564276.1|AW564276 LG1_289_E04.b1_A002 Light Grown 1 (L... 464 e-129
gb|BE358487.1|BE358487 DG1_30_D05.b1_A002 Dark Grown 1 (DG1... 464 e-129
gb|CF761176.1|CF761176 DSAF1_72_B01.b1_A011 Drought-stresse... 464 e-129
gb|AW925141.1|AW925141 WS1_75_H07.b1_A002 Water-stressed 1 ... 448 e-124
gb|CF758834.1|CF758834 DSAF1_37_B06.g1_A011 Drought-stresse... 440 e-122
gb|AW744948.1|AW744948 LG1_385_B09.b1_A002 Light Grown 1 (L... 424 e-117
gb|AW745001.1|AW745001 LG1_385_B09.g1_A002 Light Grown 1 (L... 424 e-117
gb|AW747718.1|AW747718 WS1_75_H07.g1_A002 Water-stressed 1 ... 410 e-113
gb|CF071923.1|CF071923 FE1_19_C12.g1_A002 Iron-deficient se... 402 e-110
gb|CF072684.1|CF072684 FE1_25_C08.b1_A002 Iron-deficient se... 383 e-104
gb|CW429421.1|CW429421 fsbb001f142k18k0 Sorghum methylation... 363 1e-098
gb|CF486826.1|CF486826 POL1_40_B05.b1_A002 Pollen Sorghum b... 349 2e-094
gb|CW028426.1|CW028426 104_255_10499086_114_30394 Sorghum m... 319 2e-085
gb|CW360434.1|CW360434 fsbb001f028i09k0 Sorghum methylation... 319 2e-085
gb|CW397161.1|CW397161 fsbb001f085o22f0 Sorghum methylation... 285 3e-075
gb|BE593156.1|BE593156 WS1_98_C01.g1_A002 Water-stressed 1 ... 272 4e-071
gb|CW348914.1|CW348914 fsbb001f009i04k0 Sorghum methylation... 216 2e-054
gb|DN552763.1|DN552763 pSHR-RT-MR-H2_F07_C210 pSHR Sorghum ... 161 1e-037
gb|CL190317.1|CL190317 104_408_10906000_116_32502_058 Sorgh... 151 1e-034
gb|CW028427.1|CW028427 104_255_10499086_116_30393 Sorghum m... 151 1e-034
gb|CW170205.1|CW170205 104_580_11155083_116_36513_008 Sorgh... 151 1e-034
gb|CW192941.1|CW192941 104_615_11179298_148_36771_005 Sorgh... 151 1e-034
gb|CW360433.1|CW360433 fsbb001f028i09f0 Sorghum methylation... 151 1e-034
gb|CW502444.1|CW502444 fsbb001f298m13k0 Sorghum methylation... 151 1e-034
gb|CF761338.1|CF761338 DSAF1_74_A01.b1_A011 Drought-stresse... 145 6e-033
gb|CW137062.1|CW137062 104_523_11119092_148_34867_044 Sorgh... 143 2e-032
gb|CW186907.1|CW186907 104_605_11166811_148_36718_080 Sorgh... 143 2e-032
gb|CW297816.1|CW297816 104_780_11462242_148_35653_045 Sorgh... 143 2e-032
gb|CW348913.1|CW348913 fsbb001f009i04f0 Sorghum methylation... 143 2e-032
gb|CW376984.1|CW376984 fsbb001f055b21f0 Sorghum methylation... 143 2e-032
gb|CW483366.1|CW483366 fsbb001f244p16k0 Sorghum methylation... 135 6e-030
gb|CW170206.1|CW170206 104_580_11155083_148_36514_008 Sorgh... 131 9e-029
gb|CW483365.1|CW483365 fsbb001f244p16f0 Sorghum methylation... 129 4e-028
gb|CW137061.1|CW137061 104_523_11119092_116_34871_044 Sorgh... 127 1e-027
gb|CL194203.1|CL194203 104_418_10941467_114_32283_040 Sorgh... 125 6e-027
gb|CL190316.1|CL190316 104_408_10906000_114_32484_058 Sorgh... 92 8e-017
gb|BZ337132.1|BZ337132 ia85e02.b1 WGS-SbicolorF (JM107 adap... 88 1e-015
gb|AW284428.1|AW284428 LG1_289_E04.g1_A002 Light Grown 1 (L... 84 2e-014
gb|CW330152.1|CW330152 104_827_11480221_148_36012_063 Sorgh... 74 2e-011
gb|CW330151.1|CW330151 104_827_11480221_116_36011_063 Sorgh... 72 7e-011
gb|BF317674.1|BF317674 OV1_11_G08.g1_A002 Ovary 1 (OV1) Sor... 72 7e-011
gb|BF318078.1|BF318078 OV1_11_G08.b1_A002 Ovary 1 (OV1) Sor... 72 7e-011
gb|CF071010.1|CF071010 FE1_15_H05.b1_A002 Iron-deficient se... 64 2e-008
gb|CW361381.1|CW361381 fsbb001f029o22f0 Sorghum methylation... 56 4e-006
gb|CL703679.2|CL703679 SP__Bb0004B09.f SP__Bb Sorghum propi... 50 3e-004
>gb|AW678365.1|AW678365 WS1_15_G09.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 542
Score = 769 bits (388), Expect = 0.0
Identities = 464/488 (95%), Gaps = 1/488 (0%)
Strand = Plus / Plus
Query: 32 gcaccgccgcatcaccgaagg-ttcgcaaagatggcggtgccgctgctgacgcagaagat 90
||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 32 gcaccgccgcatcgccgcagggttcgcaaagatggcggtgccgctgctgacgcagaagat 91
Query: 91 cgtgaagaagagggtcaagcagttcaagaggccccatcttgaccgctacaagtgccttaa 150
|||||||||| ||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct: 92 cgtgaagaagcgggtcaagcagttcaagaggccccacctcgaccgctacaagtgcctcaa 151
Query: 151 gccaagctggcgcaggcccaagggtatcgactcccgcgtcaggcgtaagttcaagggatg 210
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 152 gccaagctggcgcaggcccaagggtatcgactcccgcgtcaggcggaagttcaagggatg 211
Query: 211 caccttgatgcccaacatcggatatggctccgacaagaagaccaggcactaccttcccaa 270
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 212 caccttgatgcccaacattggatatggctctgacaagaagaccaggcactaccttcccaa 271
Query: 271 caagttcaaaaagtttgttgttcacaatgtctccgagctggagctgctgctgatgcacaa 330
||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 272 caagttcaagaagtttgttgttcacaatgtctctgagctggagctgctgatgatgcacaa 331
Query: 331 caggacttactgcgctgagatcgcccacaacgtgtccacccgcaagcgcaaggagattgt 390
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 332 caggacttactgcgctgagattgcccacaacgtgtccacccgcaagcgcaaggagattgt 391
Query: 391 ggagcgtgctgcgcaactggacatcgtggtcaccaacaagctcgccaggctccgcagcca 450
||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct: 392 tgagcgtgctgcgcaactggacattgtggtcaccaacaagcttgccaggcttcgcagcca 451
Query: 451 agaggacgagtgaaatgttgagtagttttgattgtgctctgctggtgttgaagatgttac 510
|||||||||||||||||| |||||||||||||||| | |||||||||| |||| |||||
Sbjct: 452 ggaggacgagtgaaatgttcagtagttttgattgtgatttgctggtgttcaagacgttac 511
Query: 511 tgagattg 518
||||||||
Sbjct: 512 tgagattg 519
>gb|CF769491.1|CF769491 DSBF1_2_B06.b1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_2_B06_A010 5', mRNA sequence
Length = 515
Score = 745 bits (376), Expect = 0.0
Identities = 470/500 (94%), Gaps = 1/500 (0%)
Strand = Plus / Plus
Query: 77 ctgacgcagaagatcgtgaagaagagggtcaagcagttcaagaggccccatcttgaccgc 136
|||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||
Sbjct: 1 ctgacgcagaagatcgtgaagaagcgggtcaagcagttcaagaggccccacctcgaccgc 60
Query: 137 tacaagtgccttaagccaagctggcgcaggcccaagggtatcgactcccgcgtcaggcgt 196
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tacaagtgcctcaagccaagctggcgcaggcccaagggtatcgactcccgcgtcaggcgg 120
Query: 197 aagttcaagggatgcaccttgatgcccaacatcggatatggctccgacaagaagaccagg 256
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 121 aagttcaagggatgcaccttgatgcccaacattggatatggctctgacaagaagaccagg 180
Query: 257 cactaccttcccaacaagttcaaaaagtttgttgttcacaatgtctccgagctggagctg 316
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 181 cactaccttcccaacaagttcaagaagtttgttgttcacaatgtctctgagctggagctg 240
Query: 317 ctgctgatgcacaacaggacttactgcgctgagatcgcccacaacgtgtccacccgcaag 376
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 241 ctgatgatgcacaacaggacttactgcgctgagattgcccacaacgtgtccacccgcaag 300
Query: 377 cgcaaggagattgtggagcgtgctgcgcaactggacatcgtggtcaccaacaagctcgcc 436
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 301 cgcaaggagattgttgagcgtgctgcgcaactggacattgtggtcaccaacaagcttgcc 360
Query: 437 aggctccgcagccaagaggacgagtgaaatgttgagtagttttgattgtgctctgctggt 496
||||| |||||||| |||||||||||||||||| |||||||||||||||| | |||||||
Sbjct: 361 aggcttcgcagccaggaggacgagtgaaatgttcagtagttttgattgtgatttgctggt 420
Query: 497 gttgaagatgttactgagattgatgtt-cttctgtaccatttctatgcttatgatagact 555
||| |||| ||||||||||||| | | || || |||||||| |||||||||| ||||||
Sbjct: 421 gttcaagacgttactgagattggagatactgctctaccatttttatgcttatgttagact 480
Query: 556 tttcatatggacaaaattat 575
|||| |||||||||||||||
Sbjct: 481 tttcctatggacaaaattat 500
>gb|AW677286.1|AW677286 DG1_7_A08.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 439
Score = 720 bits (363), Expect = 0.0
Identities = 414/431 (96%)
Strand = Plus / Plus
Query: 55 cgcaaagatggcggtgccgctgctgacgcagaagatcgtgaagaagagggtcaagcagtt 114
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 9 cgcaaagatggcggtgccgctgctgacgcagaagatcgtgaagaagcgggtcaagcagtt 68
Query: 115 caagaggccccatcttgaccgctacaagtgccttaagccaagctggcgcaggcccaaggg 174
|||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 69 caagaggccccacctcgaccgctacaagtgcctcaagccaagctggcgcaggcccaaggg 128
Query: 175 tatcgactcccgcgtcaggcgtaagttcaagggatgcaccttgatgcccaacatcggata 234
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 129 tatcgactcccgcgtcaggcggaagttcaagggatgcaccttgatgcccaacattggata 188
Query: 235 tggctccgacaagaagaccaggcactaccttcccaacaagttcaaaaagtttgttgttca 294
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 189 tggctctgacaagaagaccaggcactaccttcccaacaagttcaagaagtttgttgttca 248
Query: 295 caatgtctccgagctggagctgctgctgatgcacaacaggacttactgcgctgagatcgc 354
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 249 caatgtctctgagctggagctgctgatgatgcacaacaggacttactgcgctgagattgc 308
Query: 355 ccacaacgtgtccacccgcaagcgcaaggagattgtggagcgtgctgcgcaactggacat 414
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 309 ccacaacgtgtccacccgcaagcgcaaggagattgttgagcgtgctgcgcaactggacat 368
Query: 415 cgtggtcaccaacaagctcgccaggctccgcagccaagaggacgagtgaaatgttgagta 474
||||||||||||||||| |||||||| |||||||| |||||||||||||||||| ||||
Sbjct: 369 tgtggtcaccaacaagcttgccaggcttcgcagccaggaggacgagtgaaatgttcagta 428
Query: 475 gttttgattgt 485
|||||||||||
Sbjct: 429 gttttgattgt 439
>gb|CF769577.1|CF769577 DSBF1_2_B06.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_2_B06_A010 3', mRNA sequence
Length = 560
Score = 712 bits (359), Expect = 0.0
Identities = 483/521 (92%), Gaps = 5/521 (0%)
Strand = Plus / Plus
Query: 103 ggtcaagcagttcaagaggccccatcttgaccgctacaagtgccttaagccaagctggcg 162
|||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct: 1 ggtcaagcagttcaagaggccccacctcgaccgctacaagtgcctcaagccaagctggcg 60
Query: 163 caggcccaagggtatcgactcccgcgtcaggcgtaagttcaagggatgcaccttgatgcc 222
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 61 caggcccaagggtatcgactcccgcgtcaggcggaagttcaagggatgcaccttgatgcc 120
Query: 223 caacatcggatatggctccgacaagaagaccaggcactaccttcccaacaagttcaaaaa 282
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 121 caacattggatatggctctgacaagaagaccaggcactaccttcccaacaagttcaagaa 180
Query: 283 gtttgttgttcacaatgtctccgagctggagctgctgctgatgcacaacaggacttactg 342
|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 181 gtttgttgttcacaatgtctttgagctggagctgctgatgatgcacaacaggacttactg 240
Query: 343 cgctgagatcgcccacaacgtgtccacccgcaagcgcaaggagattgtggagcgtgctgc 402
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 241 cgctgagattgcccacaacgtgtccacccgcaagcgcaaggagattgttgagcgtgctgc 300
Query: 403 gcaactggacatcgtggtcaccaacaagctcgccaggctccgcagccaagaggacgagtg 462
|||||||||||| ||||||||||||||||| |||||||| |||||||| |||||||||||
Sbjct: 301 gcaactggacattgtggtcaccaacaagcttgccaggcttcgcagccaggaggacgagtg 360
Query: 463 aaatgttgagtagttttgattgtgctctgctggtgttgaagatgttactgagattgatgt 522
||||||| |||||||||||||||| | |||||||||| |||| ||||||||||||| |
Sbjct: 361 aaatgttcagtagttttgattgtgatttgctggtgttcaagacgttactgagattggaga 420
Query: 523 t-cttctgtaccatttctatgcttatgatagacttttcatatggacaaaat--tatgcta 579
| || || |||||||| |||||||||| |||||||||| |||||||||||| |||| ||
Sbjct: 421 tactgctctaccatttttatgcttatgttagacttttcctatggacaaaattatatgtta 480
Query: 580 tgagtgaaaagagttatggggagtgccatctagttttgacc 620
||||| ||||||| |||| |||| ||||||||||||||||
Sbjct: 481 tgagt--aaagagtgatggagagtaccatctagttttgacc 519
>gb|CF758026.1|CF758026 DSAF1_26_D04.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_26_D04_A011 3', mRNA sequence
Length = 482
Score = 660 bits (333), Expect = 0.0
Identities = 448/483 (92%), Gaps = 5/483 (1%)
Strand = Plus / Plus
Query: 136 ctacaagtgccttaagccaagctggcgcaggcccaagggtatcgactcccgcgtcaggcg 195
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctacaagtgcctcaagccaagctggcgcaggcccaagggtatcgactcccgcgtcaggcg 60
Query: 196 taagttcaagggatgcaccttgatgcccaacatcggatatggctccgacaagaagaccag 255
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 61 gaagttcaagggatgcaccttgatgcccaacattggatatggctctgacaagaagaccag 120
Query: 256 gcactaccttcccaacaagttcaaaaagtttgttgttcacaatgtctccgagctggagct 315
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 121 gcactaccttcccaacaagttcaagaagtttgttgttcacaatgtctctgagctggagct 180
Query: 316 gctgctgatgcacaacaggacttactgcgctgagatcgcccacaacgtgtccacccgcaa 375
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 181 gctgatgatgcacaacaggacttactgcgctgagattgcccacaacgtgtccacccgcaa 240
Query: 376 gcgcaaggagattgtggagcgtgctgcgcaactggacatcgtggtcaccaacaagctcgc 435
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 241 gcgcaaggagattgttgagcgtgctgcgcaactggacattgtggtcaccaacaagcttgc 300
Query: 436 caggctccgcagccaagaggacgagtgaaatgttgagtagttttgattgtgctctgctgg 495
|||||| |||||||| |||||||||||||||||| |||||||||||||||| | ||||||
Sbjct: 301 caggcttcgcagccaggaggacgagtgaaatgttcagtagttttgattgtgatttgctgg 360
Query: 496 tgttgaagatgttactgagattgatgtt-cttctgtaccatttctatgcttatgatagac 554
|||| |||| ||||||||||||| | | || || |||||||| |||||||||| |||||
Sbjct: 361 tgttcaagacgttactgagattggagatactgctctaccatttttatgcttatgttagac 420
Query: 555 ttttcatatggacaaaat--tatgctatgagtgaaaagagttatggggagtgccatctag 612
||||| |||||||||||| |||| ||||||| ||||||| |||| |||| ||||||||
Sbjct: 421 ttttcctatggacaaaattatatgttatgagt--aaagagtgatggagagtaccatctag 478
Query: 613 ttt 615
|||
Sbjct: 479 ttt 481
>gb|AW564276.1|AW564276 LG1_289_E04.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 632
Score = 464 bits (234), Expect = e-129
Identities = 360/402 (89%)
Strand = Plus / Plus
Query: 60 agatggcggtgccgctgctgacgcagaagatcgtgaagaagagggtcaagcagttcaaga 119
||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 49 agatggcggtgcctctgctgacgaagaagatcgtgaagaagcgggtcaagcagttcaaga 108
Query: 120 ggccccatcttgaccgctacaagtgccttaagccaagctggcgcaggcccaagggtatcg 179
||||||| || |||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 109 ggccccacctcgaccgctacaagtgccttaagccaagctggcgcaggccaaagggtattg 168
Query: 180 actcccgcgtcaggcgtaagttcaagggatgcaccttgatgcccaacatcggatatggct 239
||||||| |||||| | |||||||||||||||||||||||||||||||| || || ||||
Sbjct: 169 actcccgtgtcaggaggaagttcaagggatgcaccttgatgcccaacattggttacggct 228
Query: 240 ccgacaagaagaccaggcactaccttcccaacaagttcaaaaagtttgttgttcacaatg 299
| |||||| ||||||||||||||||||||||||||||| |||||||| || |||||||
Sbjct: 229 ctgacaagtcaaccaggcactaccttcccaacaagttcaagaagtttgtggtgcacaatg 288
Query: 300 tctccgagctggagctgctgctgatgcacaacaggacttactgcgctgagatcgcccaca 359
|||| ||||||||| |||| |||||||||||||||| ||||| || |||||||||||||
Sbjct: 289 tctctgagctggagttgctcatgatgcacaacaggacctactgtgccgagatcgcccaca 348
Query: 360 acgtgtccacccgcaagcgcaaggagattgtggagcgtgctgcgcaactggacatcgtgg 419
|||| |||||| ||||||||||||||||| ||||| || | || || ||||| ||||
Sbjct: 349 acgtctccaccaagaagcgcaaggagattgttgagcgcgcctcacagcttgacattgtgg 408
Query: 420 tcaccaacaagctcgccaggctccgcagccaagaggacgagt 461
|||||||||||||||| |||||||||||||| ||||| ||||
Sbjct: 409 tcaccaacaagctcgctaggctccgcagccaggaggatgagt 450
>gb|BE358487.1|BE358487 DG1_30_D05.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 526
Score = 464 bits (234), Expect = e-129
Identities = 360/402 (89%)
Strand = Plus / Plus
Query: 60 agatggcggtgccgctgctgacgcagaagatcgtgaagaagagggtcaagcagttcaaga 119
||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 63 agatggcggtgcctctgctgacgaagaagatcgtgaagaagcgggtcaagcagttcaaga 122
Query: 120 ggccccatcttgaccgctacaagtgccttaagccaagctggcgcaggcccaagggtatcg 179
||||||| || |||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 123 ggccccacctcgaccgctacaagtgccttaagccaagctggcgcaggccaaagggtattg 182
Query: 180 actcccgcgtcaggcgtaagttcaagggatgcaccttgatgcccaacatcggatatggct 239
||||||| |||||| | |||||||||||||||||||||||||||||||| || || ||||
Sbjct: 183 actcccgtgtcaggaggaagttcaagggatgcaccttgatgcccaacattggttacggct 242
Query: 240 ccgacaagaagaccaggcactaccttcccaacaagttcaaaaagtttgttgttcacaatg 299
| |||||| ||||||||||||||||||||||||||||| |||||||| || |||||||
Sbjct: 243 ctgacaagtcaaccaggcactaccttcccaacaagttcaagaagtttgtggtgcacaatg 302
Query: 300 tctccgagctggagctgctgctgatgcacaacaggacttactgcgctgagatcgcccaca 359
|||| ||||||||| |||| |||||||||||||||| ||||| || |||||||||||||
Sbjct: 303 tctctgagctggagttgctcatgatgcacaacaggacctactgtgccgagatcgcccaca 362
Query: 360 acgtgtccacccgcaagcgcaaggagattgtggagcgtgctgcgcaactggacatcgtgg 419
|||| |||||| ||||||||||||||||| ||||| || | || || ||||| ||||
Sbjct: 363 acgtctccaccaagaagcgcaaggagattgttgagcgcgcctcacagcttgacattgtgg 422
Query: 420 tcaccaacaagctcgccaggctccgcagccaagaggacgagt 461
|||||||||||||||| |||||||||||||| ||||| ||||
Sbjct: 423 tcaccaacaagctcgctaggctccgcagccaggaggatgagt 464
>gb|CF761176.1|CF761176 DSAF1_72_B01.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_72_B01_A011 5', mRNA sequence
Length = 540
Score = 464 bits (234), Expect = e-129
Identities = 360/402 (89%)
Strand = Plus / Plus
Query: 60 agatggcggtgccgctgctgacgcagaagatcgtgaagaagagggtcaagcagttcaaga 119
||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 54 agatggcggtgcctctgctgacgaagaagatcgtgaagaagcgggtcaagcagttcaaga 113
Query: 120 ggccccatcttgaccgctacaagtgccttaagccaagctggcgcaggcccaagggtatcg 179
||||||| || |||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 114 ggccccacctcgaccgctacaagtgccttaagccaagctggcgcaggccaaagggtattg 173
Query: 180 actcccgcgtcaggcgtaagttcaagggatgcaccttgatgcccaacatcggatatggct 239
||||||| |||||| | |||||||||||||||||||||||||||||||| || || ||||
Sbjct: 174 actcccgtgtcaggaggaagttcaagggatgcaccttgatgcccaacattggttacggct 233
Query: 240 ccgacaagaagaccaggcactaccttcccaacaagttcaaaaagtttgttgttcacaatg 299
| |||||| ||||||||||||||||||||||||||||| |||||||| || |||||||
Sbjct: 234 ctgacaagtcaaccaggcactaccttcccaacaagttcaagaagtttgtggtgcacaatg 293
Query: 300 tctccgagctggagctgctgctgatgcacaacaggacttactgcgctgagatcgcccaca 359
|||| ||||||||| |||| |||||||||||||||| ||||| || |||||||||||||
Sbjct: 294 tctctgagctggagttgctcatgatgcacaacaggacctactgtgccgagatcgcccaca 353
Query: 360 acgtgtccacccgcaagcgcaaggagattgtggagcgtgctgcgcaactggacatcgtgg 419
|||| |||||| ||||||||||||||||| ||||| || | || || ||||| ||||
Sbjct: 354 acgtctccaccaagaagcgcaaggagattgttgagcgcgcctcacagcttgacattgtgg 413
Query: 420 tcaccaacaagctcgccaggctccgcagccaagaggacgagt 461
|||||||||||||||| |||||||||||||| ||||| ||||
Sbjct: 414 tcaccaacaagctcgctaggctccgcagccaggaggatgagt 455
>gb|AW925141.1|AW925141 WS1_75_H07.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 447
Score = 448 bits (226), Expect = e-124
Identities = 346/386 (89%)
Strand = Plus / Plus
Query: 60 agatggcggtgccgctgctgacgcagaagatcgtgaagaagagggtcaagcagttcaaga 119
||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 62 agatggcggtgcctctgctgacgaagaagatcgtgaagaagcgggtcaagcagttcaaga 121
Query: 120 ggccccatcttgaccgctacaagtgccttaagccaagctggcgcaggcccaagggtatcg 179
||||||| || |||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 122 ggccccacctcgaccgctacaagtgccttaagccaagctggcgcaggccaaagggtattg 181
Query: 180 actcccgcgtcaggcgtaagttcaagggatgcaccttgatgcccaacatcggatatggct 239
||||||| |||||| | |||||||||||||||||||||||||||||||| || || ||||
Sbjct: 182 actcccgtgtcaggaggaagttcaagggatgcaccttgatgcccaacattggttacggct 241
Query: 240 ccgacaagaagaccaggcactaccttcccaacaagttcaaaaagtttgttgttcacaatg 299
| |||||| ||||||||||||||||||||||||||||| |||||||| || |||||||
Sbjct: 242 ctgacaagtcaaccaggcactaccttcccaacaagttcaagaagtttgtggtgcacaatg 301
Query: 300 tctccgagctggagctgctgctgatgcacaacaggacttactgcgctgagatcgcccaca 359
|||| ||||||||| |||| |||||||||||||||| ||||| || |||||||||||||
Sbjct: 302 tctctgagctggagttgctcatgatgcacaacaggacctactgtgccgagatcgcccaca 361
Query: 360 acgtgtccacccgcaagcgcaaggagattgtggagcgtgctgcgcaactggacatcgtgg 419
|||| |||||| ||||||||||||||||| ||||| || | || || ||||| ||||
Sbjct: 362 acgtctccaccaagaagcgcaaggagattgttgagcgcgcctcacagcttgacattgtgg 421
Query: 420 tcaccaacaagctcgccaggctccgc 445
|||||||||||||||| |||||||||
Sbjct: 422 tcaccaacaagctcgctaggctccgc 447
>gb|CF758834.1|CF758834 DSAF1_37_B06.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_37_B06_A011 3', mRNA sequence
Length = 577
Score = 440 bits (222), Expect = e-122
Identities = 345/386 (89%)
Strand = Plus / Plus
Query: 76 gctgacgcagaagatcgtgaagaagagggtcaagcagttcaagaggccccatcttgaccg 135
||||||| ||||||||||||||||| ||||||||||||||||||||||||| || |||||
Sbjct: 1 gctgacgaagaagatcgtgaagaagcgggtcaagcagttcaagaggccccacctcgaccg 60
Query: 136 ctacaagtgccttaagccaagctggcgcaggcccaagggtatcgactcccgcgtcaggcg 195
||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||| |
Sbjct: 61 ctacaagtgccttaagccaagctggcgcaggccaaagggtattgactcccgtgtcaggag 120
Query: 196 taagttcaagggatgcaccttgatgcccaacatcggatatggctccgacaagaagaccag 255
|||||||||||||||||||||||||||||||| || || ||||| |||||| |||||
Sbjct: 121 gaagttcaagggatgcaccttgatgcccaacattggttacggctctgacaagtcaaccag 180
Query: 256 gcactaccttcccaacaagttcaaaaagtttgttgttcacaatgtctccgagctggagct 315
|||||||||||||||||||||||| |||||||| || ||||||||||| ||||||||| |
Sbjct: 181 gcactaccttcccaacaagttcaagaagtttgtggtgcacaatgtctctgagctggagtt 240
Query: 316 gctgctgatgcacaacaggacttactgcgctgagatcgcccacaacgtgtccacccgcaa 375
||| |||||||||||||||| ||||| || ||||||||||||||||| |||||| ||
Sbjct: 241 gctcatgatgcacaacaggacctactgtgccgagatcgcccacaacgtctccaccaagaa 300
Query: 376 gcgcaaggagattgtggagcgtgctgcgcaactggacatcgtggtcaccaacaagctcgc 435
||||||||||||||| ||||| || | || || ||||| ||||||||||||||||||||
Sbjct: 301 gcgcaaggagattgttgagcgcgcctcacagcttgacattgtggtcaccaacaagctcgc 360
Query: 436 caggctccgcagccaagaggacgagt 461
|||||||||||||| ||||| ||||
Sbjct: 361 taggctccgcagccaggaggatgagt 386
>gb|AW744948.1|AW744948 LG1_385_B09.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 606
Score = 424 bits (214), Expect = e-117
Identities = 337/378 (89%)
Strand = Plus / Plus
Query: 84 agaagatcgtgaagaagagggtcaagcagttcaagaggccccatcttgaccgctacaagt 143
||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||
Sbjct: 9 agaagatcgtgaagaagcgggtcaagcagttcaagaggccccacctcgaccgctacaagt 68
Query: 144 gccttaagccaagctggcgcaggcccaagggtatcgactcccgcgtcaggcgtaagttca 203
|| |||||||||||||||||||||| |||||||| |||||||| |||||| | |||||||
Sbjct: 69 gctttaagccaagctggcgcaggccaaagggtattgactcccgtgtcaggaggaagttca 128
Query: 204 agggatgcaccttgatgcccaacatcggatatggctccgacaagaagaccaggcactacc 263
||||||||||||||||||||||||| || || ||||| |||||| |||||||||||||
Sbjct: 129 agggatgcaccttgatgcccaacattggttacggctctgacaagtcaaccaggcactacc 188
Query: 264 ttcccaacaagttcaaaaagtttgttgttcacaatgtctccgagctggagctgctgctga 323
|||||||||||||||| |||||||| || ||||||||||| ||||||||| |||| |||
Sbjct: 189 ttcccaacaagttcaagaagtttgtggtgcacaatgtctctgagctggagttgctcatga 248
Query: 324 tgcacaacaggacttactgcgctgagatcgcccacaacgtgtccacccgcaagcgcaagg 383
||||||||||||| ||||| || ||||||||||||||||| |||||| ||||||||||
Sbjct: 249 tgcacaacaggacctactgtgccgagatcgcccacaacgtctccaccaagaagcgcaagg 308
Query: 384 agattgtggagcgtgctgcgcaactggacatcgtggtcaccaacaagctcgccaggctcc 443
||||||| ||||| || | || || ||||| |||||||||||||||||||| |||||||
Sbjct: 309 agattgttgagcgcgcctcacagcttgacattgtggtcaccaacaagctcgctaggctcc 368
Query: 444 gcagccaagaggacgagt 461
||||||| ||||| ||||
Sbjct: 369 gcagccaggaggatgagt 386
>gb|AW745001.1|AW745001 LG1_385_B09.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 586
Score = 424 bits (214), Expect = e-117
Identities = 337/378 (89%)
Strand = Plus / Plus
Query: 84 agaagatcgtgaagaagagggtcaagcagttcaagaggccccatcttgaccgctacaagt 143
||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||
Sbjct: 9 agaagatcgtgaagaagcgggtcaagcagttcaagaggccccacctcgaccgctacaagt 68
Query: 144 gccttaagccaagctggcgcaggcccaagggtatcgactcccgcgtcaggcgtaagttca 203
|| |||||||||||||||||||||| |||||||| |||||||| |||||| | |||||||
Sbjct: 69 gctttaagccaagctggcgcaggccaaagggtattgactcccgtgtcaggaggaagttca 128
Query: 204 agggatgcaccttgatgcccaacatcggatatggctccgacaagaagaccaggcactacc 263
||||||||||||||||||||||||| || || ||||| |||||| |||||||||||||
Sbjct: 129 agggatgcaccttgatgcccaacattggttacggctctgacaagtcaaccaggcactacc 188
Query: 264 ttcccaacaagttcaaaaagtttgttgttcacaatgtctccgagctggagctgctgctga 323
|||||||||||||||| |||||||| || ||||||||||| ||||||||| |||| |||
Sbjct: 189 ttcccaacaagttcaagaagtttgtggtgcacaatgtctctgagctggagttgctcatga 248
Query: 324 tgcacaacaggacttactgcgctgagatcgcccacaacgtgtccacccgcaagcgcaagg 383
||||||||||||| ||||| || ||||||||||||||||| |||||| ||||||||||
Sbjct: 249 tgcacaacaggacctactgtgccgagatcgcccacaacgtctccaccaagaagcgcaagg 308
Query: 384 agattgtggagcgtgctgcgcaactggacatcgtggtcaccaacaagctcgccaggctcc 443
||||||| ||||| || | || || ||||| |||||||||||||||||||| |||||||
Sbjct: 309 agattgttgagcgcgcctcacagcttgacattgtggtcaccaacaagctcgctaggctcc 368
Query: 444 gcagccaagaggacgagt 461
||||||| ||||| ||||
Sbjct: 369 gcagccaggaggatgagt 386
>gb|AW747718.1|AW747718 WS1_75_H07.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 567
Score = 410 bits (207), Expect = e-113
Identities = 327/367 (89%)
Strand = Plus / Plus
Query: 95 aagaagagggtcaagcagttcaagaggccccatcttgaccgctacaagtgccttaagcca 154
|||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 1 aagaagcgggtcaagcagttcaagaggccccacctcgaccgctacaagtgccttaagcca 60
Query: 155 agctggcgcaggcccaagggtatcgactcccgcgtcaggcgtaagttcaagggatgcacc 214
|||||||||||||| |||||||| |||||||| |||||| | ||||||||||||||||||
Sbjct: 61 agctggcgcaggccaaagggtattgactcccgtgtcaggaggaagttcaagggatgcacc 120
Query: 215 ttgatgcccaacatcggatatggctccgacaagaagaccaggcactaccttcccaacaag 274
|||||||||||||| || || ||||| |||||| ||||||||||||||||||||||||
Sbjct: 121 ttgatgcccaacattggttacggctctgacaagtcaaccaggcactaccttcccaacaag 180
Query: 275 ttcaaaaagtttgttgttcacaatgtctccgagctggagctgctgctgatgcacaacagg 334
||||| |||||||| || ||||||||||| ||||||||| |||| ||||||||||||||
Sbjct: 181 ttcaagaagtttgtggtgcacaatgtctctgagctggagttgctcatgatgcacaacagg 240
Query: 335 acttactgcgctgagatcgcccacaacgtgtccacccgcaagcgcaaggagattgtggag 394
|| ||||| || ||||||||||||||||| |||||| ||||||||||||||||| |||
Sbjct: 241 acctactgtgccgagatcgcccacaacgtctccaccaagaagcgcaaggagattgttgag 300
Query: 395 cgtgctgcgcaactggacatcgtggtcaccaacaagctcgccaggctccgcagccaagag 454
|| || | || || ||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct: 301 cgcgcctcacagcttgacattgtggtcaccaacaagctcgctaggctccgcagccaggag 360
Query: 455 gacgagt 461
|| ||||
Sbjct: 361 gatgagt 367
>gb|CF071923.1|CF071923 FE1_19_C12.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_19_C12_A002 5', mRNA sequence
Length = 594
Score = 402 bits (203), Expect = e-110
Identities = 341/387 (88%)
Strand = Plus / Minus
Query: 75 tgctgacgcagaagatcgtgaagaagagggtcaagcagttcaagaggccccatcttgacc 134
|||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||
Sbjct: 591 tgctgacgcagaagatcgtgaagaagcgggtcaagcagttcaagaggccccacctcgacc 532
Query: 135 gctacaagtgccttaagccaagctggcgcaggcccaagggtatcgactcccgcgtcaggc 194
||||||||||||| ||||||||||||||||||||||||||||| ||||| || |||||||
Sbjct: 531 gctacaagtgcctcaagccaagctggcgcaggcccaagggtattgactctcgtgtcaggc 472
Query: 195 gtaagttcaagggatgcaccttgatgcccaacatcggatatggctccgacaagaagacca 254
| |||||||| ||||||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct: 471 ggaagttcaaaggatgcaccttgatgcctaacattggatatggctctgacaagaagacca 412
Query: 255 ggcactaccttcccaacaagttcaaaaagtttgttgttcacaatgtctccgagctggagc 314
||||||| || ||||||||||| || |||||||| || || |||||||| |||||||||
Sbjct: 411 ggcactatctccccaacaagtttaagaagtttgtcgtgcataatgtctctgagctggagt 352
Query: 315 tgctgctgatgcacaacaggacttactgcgctgagatcgcccacaacgtgtccacccgca 374
|||| |||||||||||||||| ||||| ||||| || || ||| | |||||||| |
Sbjct: 351 tgcttatgatgcacaacaggacctactgtgctgaaattgcacacgatgtgtccactaaga 292
Query: 375 agcgcaaggagattgtggagcgtgctgcgcaactggacatcgtggtcaccaacaagctcg 434
|||||||||| ||||||||||| ||||| || || ||||| ||||||||||||||||| |
Sbjct: 291 agcgcaaggaaattgtggagcgagctgctcagcttgacattgtggtcaccaacaagcttg 232
Query: 435 ccaggctccgcagccaagaggacgagt 461
|| | || |||||||| ||||| ||||
Sbjct: 231 cccgtcttcgcagccaggaggatgagt 205
>gb|CF072684.1|CF072684 FE1_25_C08.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_25_C08_A002 3', mRNA sequence
Length = 600
Score = 383 bits (193), Expect = e-104
Identities = 313/353 (88%)
Strand = Plus / Plus
Query: 109 gcagttcaagaggccccatcttgaccgctacaagtgccttaagccaagctggcgcaggcc 168
|||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 57 gcaggtcaagaggccccacctcgaccgctacaagtgccttaagccaagctggcgcaggcc 116
Query: 169 caagggtatcgactcccgcgtcaggcgtaagttcaagggatgcaccttgatgcccaacat 228
|||||||| |||||||| |||||| | ||||||||||||||||||||||||||||||||
Sbjct: 117 aaagggtattgactcccgtgtcaggaggaagttcaagggatgcaccttgatgcccaacat 176
Query: 229 cggatatggctccgacaagaagaccaggcactaccttcccaacaagttcaaaaagtttgt 288
|| || ||||| |||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 177 tggttacggctctgacaagtcaaccaggcactaccttcccaacaagttcaagaagtttgt 236
Query: 289 tgttcacaatgtctccgagctggagctgctgctgatgcacaacaggacttactgcgctga 348
|| ||||||||||| ||||||||| |||| |||||||||||||||| ||||| || ||
Sbjct: 237 ggtgcacaatgtctctgagctggagttgcttatgatgcacaacaggacctactgtgccga 296
Query: 349 gatcgcccacaacgtgtccacccgcaagcgcaaggagattgtggagcgtgctgcgcaact 408
||||||||||||||| |||||| ||||||||||||||||| ||||| || | || ||
Sbjct: 297 gatcgcccacaacgtctccaccaagaagcgcaaggagattgttgagcgcgcctcacagct 356
Query: 409 ggacatcgtggtcaccaacaagctcgccaggctccgcagccaagaggacgagt 461
||||| |||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct: 357 tgacattgtggtcaccaacaagctcgctaggctccgcagccaggaggatgagt 409
>gb|CW429421.1|CW429421 fsbb001f142k18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f142k18, DNA
sequence
Length = 795
Score = 363 bits (183), Expect = 1e-098
Identities = 286/317 (90%), Gaps = 5/317 (1%)
Strand = Plus / Plus
Query: 331 caggacttactgcgctgagatcgcccacaacgtgtccacccgcaagcgcaaggagattgt 390
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 108 caggacttactgcgctgagattgcccacaacgtgtccacccgcaagcgcaaggagattgt 167
Query: 391 ggagcgtgctgcgcaactggacatcgtggtcaccaacaagctcgccaggctccgcagcca 450
||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct: 168 tgagcgtgctgcgcaactggacattgtggtcaccaacaagcttgccaggcttcgcagcca 227
Query: 451 agaggacgagtgaaatgttgagtagttttgattgtgctctgctggtgttgaagatgttac 510
|||||||||||||||||| |||||||||||||||| | |||||||||| |||| |||||
Sbjct: 228 ggaggacgagtgaaatgttcagtagttttgattgtgatttgctggtgttcaagacgttac 287
Query: 511 tgagattgatgtt-cttctgtaccatttctatgcttatgatagacttttcatatggacaa 569
|||||||| | | || || |||||||| |||||||||| |||||||||| |||||||||
Sbjct: 288 tgagattggagatactgctctaccatttttatgcttatgttagacttttcctatggacaa 347
Query: 570 aattat--gctatgagtgaaaagagttatggggagtgccatctagttttgaccggacacc 627
|||||| | ||||||| ||||||| |||| |||| |||||||||||||||| |||| |
Sbjct: 348 aattatatgttatgagt--aaagagtgatggagagtaccatctagttttgacccgacatc 405
Query: 628 atgcagtgtggagcctt 644
||| |||||||||||||
Sbjct: 406 atgaagtgtggagcctt 422
>gb|CF486826.1|CF486826 POL1_40_B05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_40_B05_A002 3', mRNA sequence
Length = 523
Score = 349 bits (176), Expect = 2e-094
Identities = 310/352 (88%), Gaps = 2/352 (0%)
Strand = Plus / Plus
Query: 112 gttcaagaggccccatcttgaccgctacaagtgccttaagccaagctggcgcaggcccaa 171
||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1 gttcaagaggccccacctcgaccgctacaagtgccttaagccaagctggcgcaggccaaa 60
Query: 172 gggtatcgactcccgcgtcaggcgtaagttcaagggatgcaccttgatgcccaacatcgg 231
|||||| |||||||| |||||| | ||||||||||| |||||||||||||||||||| ||
Sbjct: 61 gggtattgactcccgtgtcaggaggaagttcaagggttgcaccttgatgcccaacattgg 120
Query: 232 atatggctccgacaagaagaccagg-cactaccttcccaacaa-gttcaaaaagtttgtt 289
|| ||||| |||||| |||||| ||||||||||||||||| |||||| ||||||||
Sbjct: 121 ttacggctctgacaagtcaaccagggcactaccttcccaacaatgttcaagaagtttgtg 180
Query: 290 gttcacaatgtctccgagctggagctgctgctgatgcacaacaggacttactgcgctgag 349
|| ||||||||||| ||||||||| |||| |||||||||||||||| ||||| || |||
Sbjct: 181 gtgcacaatgtctctgagctggagttgctcatgatgcacaacaggacctactgtgccgag 240
Query: 350 atcgcccacaacgtgtccacccgcaagcgcaaggagattgtggagcgtgctgcgcaactg 409
|||||||||||||| |||||| ||||||||||||||||| ||||| || | || ||
Sbjct: 241 atcgcccacaacgtctccaccaagaagcgcaaggagattgttgagcgcgcctcacagctt 300
Query: 410 gacatcgtggtcaccaacaagctcgccaggctccgcagccaagaggacgagt 461
||||| |||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct: 301 gacattgtggtcaccaacaagctcgctaggctccgcagccaggaggatgagt 352
>gb|CW028426.1|CW028426 104_255_10499086_114_30394 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10499086, DNA
sequence
Length = 736
Score = 319 bits (161), Expect = 2e-085
Identities = 179/185 (96%)
Strand = Plus / Minus
Query: 150 agccaagctggcgcaggcccaagggtatcgactcccgcgtcaggcgtaagttcaagggat 209
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 262 agccaagctggcgcaggcccaagggtatcgactcccgcgtcaggcggaagttcaagggat 203
Query: 210 gcaccttgatgcccaacatcggatatggctccgacaagaagaccaggcactaccttccca 269
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 202 gcaccttgatgcccaacattggatatggctctgacaagaagaccaggcactaccttccca 143
Query: 270 acaagttcaaaaagtttgttgttcacaatgtctccgagctggagctgctgctgatgcaca 329
|||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 142 acaagttcaagaagtttgttgttcacaatgtctctgagctggagctgctgatgatgcaca 83
Query: 330 acagg 334
|||||
Sbjct: 82 acagg 78
>gb|CW360434.1|CW360434 fsbb001f028i09k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f028i09, DNA
sequence
Length = 767
Score = 319 bits (161), Expect = 2e-085
Identities = 179/185 (96%)
Strand = Plus / Minus
Query: 150 agccaagctggcgcaggcccaagggtatcgactcccgcgtcaggcgtaagttcaagggat 209
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 293 agccaagctggcgcaggcccaagggtatcgactcccgcgtcaggcggaagttcaagggat 234
Query: 210 gcaccttgatgcccaacatcggatatggctccgacaagaagaccaggcactaccttccca 269
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 233 gcaccttgatgcccaacattggatatggctctgacaagaagaccaggcactaccttccca 174
Query: 270 acaagttcaaaaagtttgttgttcacaatgtctccgagctggagctgctgctgatgcaca 329
|||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 173 acaagttcaagaagtttgttgttcacaatgtctctgagctggagctgctgatgatgcaca 114
Query: 330 acagg 334
|||||
Sbjct: 113 acagg 109
>gb|CW397161.1|CW397161 fsbb001f085o22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f085o22, DNA
sequence
Length = 581
Score = 285 bits (144), Expect = 3e-075
Identities = 177/188 (94%)
Strand = Plus / Minus
Query: 331 caggacttactgcgctgagatcgcccacaacgtgtccacccgcaagcgcaaggagattgt 390
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 caggacttactgcgctgagattgcccacaacgtgtccacccgcaagcgcaaggagattgt 146
Query: 391 ggagcgtgctgcgcaactggacatcgtggtcaccaacaagctcgccaggctccgcagcca 450
||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct: 145 tgagcgtgctgcgcaactggacattgtggtcaccaacaagcttgccaggcttcgcagcca 86
Query: 451 agaggacgagtgaaatgttgagtagttttgattgtgctctgctggtgttgaagatgttac 510
|||||||||||||||||| |||||||||||||||| | |||||||||| |||| |||||
Sbjct: 85 ggaggacgagtgaaatgttcagtagttttgattgtgatttgctggtgttcaagacgttac 26
Query: 511 tgagattg 518
||||||||
Sbjct: 25 tgagattg 18
Score = 89.7 bits (45), Expect = 3e-016
Identities = 51/53 (96%)
Strand = Plus / Minus
Query: 282 agtttgttgttcacaatgtctccgagctggagctgctgctgatgcacaacagg 334
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 581 agtttgttgttcacaatgtctctgagctggagctgctgatgatgcacaacagg 529
>gb|BE593156.1|BE593156 WS1_98_C01.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 454
Score = 272 bits (137), Expect = 4e-071
Identities = 245/281 (87%)
Strand = Plus / Plus
Query: 181 ctcccgcgtcaggcgtaagttcaagggatgcaccttgatgcccaacatcggatatggctc 240
|||||| |||||| | |||||||||||||||||||||||||||||||| || || |||||
Sbjct: 9 ctcccgtgtcaggaggaagttcaagggatgcaccttgatgcccaacattggttacggctc 68
Query: 241 cgacaagaagaccaggcactaccttcccaacaagttcaaaaagtttgttgttcacaatgt 300
|||||| ||||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct: 69 tgacaagtcaaccaggcactaccttcccaacaagttcaacaagtttgtggtgcacaatgt 128
Query: 301 ctccgagctggagctgctgctgatgcacaacaggacttactgcgctgagatcgcccacaa 360
||| ||||||||| |||| |||||||||||||||| ||||| | ||||||||||||||
Sbjct: 129 ctctgagctggagttgctcatgatgcacaacaggacctactgtaccgagatcgcccacaa 188
Query: 361 cgtgtccacccgcaagcgcaaggagattgtggagcgtgctgcgcaactggacatcgtggt 420
||| |||||| ||||||||||||||||| ||||| || | || || ||||| |||||
Sbjct: 189 cgtctccaccaagaagcgcaaggagattgttgagcgcgcctcacagcttgacattgtggt 248
Query: 421 caccaacaagctcgccaggctccgcagccaagaggacgagt 461
||||||||||||||| |||||||||||||| ||||| ||||
Sbjct: 249 caccaacaagctcgctaggctccgcagccaggaggatgagt 289
>gb|CW348914.1|CW348914 fsbb001f009i04k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f009i04, DNA
sequence
Length = 430
Score = 216 bits (109), Expect = 2e-054
Identities = 166/185 (89%)
Strand = Plus / Minus
Query: 150 agccaagctggcgcaggcccaagggtatcgactcccgcgtcaggcgtaagttcaagggat 209
|||||||||||||||||||||||||||| ||||| || |||||||| |||||||| ||||
Sbjct: 243 agccaagctggcgcaggcccaagggtattgactctcgtgtcaggcggaagttcaaaggat 184
Query: 210 gcaccttgatgcccaacatcggatatggctccgacaagaagaccaggcactaccttccca 269
||||||||||||| ||||| ||||||||||| |||||||||||||||||||| || ||||
Sbjct: 183 gcaccttgatgcctaacattggatatggctctgacaagaagaccaggcactatctcccca 124
Query: 270 acaagttcaaaaagtttgttgttcacaatgtctccgagctggagctgctgctgatgcaca 329
||||||| || |||||||| || || |||||||| ||||||||| |||| |||||||||
Sbjct: 123 acaagtttaagaagtttgtcgtgcataatgtctctgagctggagttgcttatgatgcaca 64
Query: 330 acagg 334
|||||
Sbjct: 63 acagg 59
>gb|DN552763.1|DN552763 pSHR-RT-MR-H2_F07_C210 pSHR Sorghum halepense cDNA, mRNA sequence
Length = 379
Score = 161 bits (81), Expect = 1e-037
Identities = 147/169 (86%)
Strand = Plus / Minus
Query: 293 cacaatgtctccgagctggagctgctgctgatgcacaacaggacttactgcgctgagatc 352
||||||||||| ||||||||| |||| |||||||||||||||| ||||| || ||||||
Sbjct: 379 cacaatgtctctgagctggagttgctcatgatgcacaacaggacctactgtgccgagatc 320
Query: 353 gcccacaacgtgtccacccgcaagcgcaaggagattgtggagcgtgctgcgcaactggac 412
||||||||||| |||||| ||||||||||||||||| ||||| || | || || |||
Sbjct: 319 gcccacaacgtctccaccaagaagcgcaaggagattgttgagcgcgcctcacagcttgac 260
Query: 413 atcgtggtcaccaacaagctcgccaggctccgcagccaagaggacgagt 461
|| |||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct: 259 attgtggtcaccaacaagctcgctaggctccgcagccaggaggatgagt 211
>gb|CL190317.1|CL190317 104_408_10906000_116_32502_058 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10906000, DNA
sequence
Length = 693
Score = 151 bits (76), Expect = 1e-034
Identities = 85/88 (96%)
Strand = Plus / Plus
Query: 60 agatggcggtgccgctgctgacgcagaagatcgtgaagaagagggtcaagcagttcaaga 119
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 387 agatggcggtgccgctgctgacgcagaagatcgtgaagaagcgggtcaagcagttcaaga 446
Query: 120 ggccccatcttgaccgctacaagtgcct 147
||||||| || |||||||||||||||||
Sbjct: 447 ggccccacctcgaccgctacaagtgcct 474
>gb|CW028427.1|CW028427 104_255_10499086_116_30393 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10499086, DNA
sequence
Length = 787
Score = 151 bits (76), Expect = 1e-034
Identities = 85/88 (96%)
Strand = Plus / Plus
Query: 60 agatggcggtgccgctgctgacgcagaagatcgtgaagaagagggtcaagcagttcaaga 119
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 233 agatggcggtgccgctgctgacgcagaagatcgtgaagaagcgggtcaagcagttcaaga 292
Query: 120 ggccccatcttgaccgctacaagtgcct 147
||||||| || |||||||||||||||||
Sbjct: 293 ggccccacctcgaccgctacaagtgcct 320
>gb|CW170205.1|CW170205 104_580_11155083_116_36513_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11155083, DNA
sequence
Length = 665
Score = 151 bits (76), Expect = 1e-034
Identities = 85/88 (96%)
Strand = Plus / Plus
Query: 60 agatggcggtgccgctgctgacgcagaagatcgtgaagaagagggtcaagcagttcaaga 119
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 341 agatggcggtgccgctgctgacgcagaagatcgtgaagaagcgggtcaagcagttcaaga 400
Query: 120 ggccccatcttgaccgctacaagtgcct 147
||||||| || |||||||||||||||||
Sbjct: 401 ggccccacctcgaccgctacaagtgcct 428
>gb|CW192941.1|CW192941 104_615_11179298_148_36771_005 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11179298, DNA
sequence
Length = 703
Score = 151 bits (76), Expect = 1e-034
Identities = 85/88 (96%)
Strand = Plus / Minus
Query: 60 agatggcggtgccgctgctgacgcagaagatcgtgaagaagagggtcaagcagttcaaga 119
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 563 agatggcggtgccgctgctgacgcagaagatcgtgaagaagcgggtcaagcagttcaaga 504
Query: 120 ggccccatcttgaccgctacaagtgcct 147
||||||| || |||||||||||||||||
Sbjct: 503 ggccccacctcgaccgctacaagtgcct 476
>gb|CW360433.1|CW360433 fsbb001f028i09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f028i09, DNA
sequence
Length = 752
Score = 151 bits (76), Expect = 1e-034
Identities = 85/88 (96%)
Strand = Plus / Plus
Query: 60 agatggcggtgccgctgctgacgcagaagatcgtgaagaagagggtcaagcagttcaaga 119
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 6 agatggcggtgccgctgctgacgcagaagatcgtgaagaagcgggtcaagcagttcaaga 65
Query: 120 ggccccatcttgaccgctacaagtgcct 147
||||||| || |||||||||||||||||
Sbjct: 66 ggccccacctcgaccgctacaagtgcct 93
>gb|CW502444.1|CW502444 fsbb001f298m13k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f298m13, DNA
sequence
Length = 606
Score = 151 bits (76), Expect = 1e-034
Identities = 85/88 (96%)
Strand = Plus / Minus
Query: 60 agatggcggtgccgctgctgacgcagaagatcgtgaagaagagggtcaagcagttcaaga 119
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 575 agatggcggtgccgctgctgacgcagaagatcgtgaagaagcgggtcaagcagttcaaga 516
Query: 120 ggccccatcttgaccgctacaagtgcct 147
||||||| || |||||||||||||||||
Sbjct: 515 ggccccacctcgaccgctacaagtgcct 488
>gb|CF761338.1|CF761338 DSAF1_74_A01.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_74_A01_A011 5', mRNA sequence
Length = 439
Score = 145 bits (73), Expect = 6e-033
Identities = 106/117 (90%)
Strand = Plus / Plus
Query: 197 aagttcaagggatgcaccttgatgcccaacatcggatatggctccgacaagaagaccagg 256
|||||||||||||||||||||||||||||||| || || ||||| |||||| ||||||
Sbjct: 5 aagttcaagggatgcaccttgatgcccaacattggttacggctctgacaagtcaaccagg 64
Query: 257 cactaccttcccaacaagttcaaaaagtttgttgttcacaatgtctccgagctggag 313
||||||||||||||||||||||| |||||||| || ||||||||||| |||||||||
Sbjct: 65 cactaccttcccaacaagttcaagaagtttgtggtgcacaatgtctctgagctggag 121
Score = 109 bits (55), Expect = 3e-022
Identities = 100/115 (86%)
Strand = Plus / Plus
Query: 347 gagatcgcccacaacgtgtccacccgcaagcgcaaggagattgtggagcgtgctgcgcaa 406
||||||||||||||||| |||||| ||||||||||||||||| ||||| || | ||
Sbjct: 129 gagatcgcccacaacgtctccaccaagaagcgcaaggagattgttgagcgcgcctcacag 188
Query: 407 ctggacatcgtggtcaccaacaagctcgccaggctccgcagccaagaggacgagt 461
|| ||||| |||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct: 189 cttgacattgtggtcaccaacaagctcgctaggctccgcagccaggaggatgagt 243
>gb|CW137062.1|CW137062 104_523_11119092_148_34867_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11119092, DNA
sequence
Length = 665
Score = 143 bits (72), Expect = 2e-032
Identities = 84/88 (95%)
Strand = Plus / Plus
Query: 60 agatggcggtgccgctgctgacgcagaagatcgtgaagaagagggtcaagcagttcaaga 119
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 528 agatggcggtgccgttgctgacgcagaagatcgtgaagaagcgggtcaagcagttcaaga 587
Query: 120 ggccccatcttgaccgctacaagtgcct 147
||||||| || |||||||||||||||||
Sbjct: 588 ggccccacctcgaccgctacaagtgcct 615
>gb|CW186907.1|CW186907 104_605_11166811_148_36718_080 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11166811, DNA
sequence
Length = 697
Score = 143 bits (72), Expect = 2e-032
Identities = 84/88 (95%)
Strand = Plus / Minus
Query: 60 agatggcggtgccgctgctgacgcagaagatcgtgaagaagagggtcaagcagttcaaga 119
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 211 agatggcggtgccgttgctgacgcagaagatcgtgaagaagcgggtcaagcagttcaaga 152
Query: 120 ggccccatcttgaccgctacaagtgcct 147
||||||| || |||||||||||||||||
Sbjct: 151 ggccccacctcgaccgctacaagtgcct 124
>gb|CW297816.1|CW297816 104_780_11462242_148_35653_045 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11462242, DNA
sequence
Length = 613
Score = 143 bits (72), Expect = 2e-032
Identities = 87/92 (94%)
Strand = Plus / Plus
Query: 60 agatggcggtgccgctgctgacgcagaagatcgtgaagaagagggtcaagcagttcaaga 119
||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 10 agatggcggtgcctctgctgacgaagaagatcgtgaagaagcgggtcaagcagttcaaga 69
Query: 120 ggccccatcttgaccgctacaagtgccttaag 151
||||||| || |||||||||||||||||||||
Sbjct: 70 ggccccacctcgaccgctacaagtgccttaag 101
>gb|CW348913.1|CW348913 fsbb001f009i04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f009i04, DNA
sequence
Length = 470
Score = 143 bits (72), Expect = 2e-032
Identities = 84/88 (95%)
Strand = Plus / Plus
Query: 60 agatggcggtgccgctgctgacgcagaagatcgtgaagaagagggtcaagcagttcaaga 119
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 3 agatggcggtgccgttgctgacgcagaagatcgtgaagaagcgggtcaagcagttcaaga 62
Query: 120 ggccccatcttgaccgctacaagtgcct 147
||||||| || |||||||||||||||||
Sbjct: 63 ggccccacctcgaccgctacaagtgcct 90
>gb|CW376984.1|CW376984 fsbb001f055b21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f055b21, DNA
sequence
Length = 707
Score = 143 bits (72), Expect = 2e-032
Identities = 84/88 (95%)
Strand = Plus / Minus
Query: 60 agatggcggtgccgctgctgacgcagaagatcgtgaagaagagggtcaagcagttcaaga 119
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 94 agatggcggtgccgttgctgacgcagaagatcgtgaagaagcgggtcaagcagttcaaga 35
Query: 120 ggccccatcttgaccgctacaagtgcct 147
||||||| || |||||||||||||||||
Sbjct: 34 ggccccacctcgaccgctacaagtgcct 7
>gb|CW483366.1|CW483366 fsbb001f244p16k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f244p16, DNA
sequence
Length = 661
Score = 135 bits (68), Expect = 6e-030
Identities = 86/92 (93%)
Strand = Plus / Minus
Query: 60 agatggcggtgccgctgctgacgcagaagatcgtgaagaagagggtcaagcagttcaaga 119
||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 589 agatggcggtgcctctgctgacgaagaagatcgtgaagaagcgggtcaagcagttcaaga 530
Query: 120 ggccccatcttgaccgctacaagtgccttaag 151
||||||| || ||||||||||||||| |||||
Sbjct: 529 ggccccacctcgaccgctacaagtgctttaag 498
>gb|CW170206.1|CW170206 104_580_11155083_148_36514_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11155083, DNA
sequence
Length = 699
Score = 131 bits (66), Expect = 9e-029
Identities = 69/70 (98%)
Strand = Plus / Minus
Query: 150 agccaagctggcgcaggcccaagggtatcgactcccgcgtcaggcgtaagttcaagggat 209
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 70 agccaagctggcgcaggcccaagggtatcgactcccgcgtcaggcggaagttcaagggat 11
Query: 210 gcaccttgat 219
||||||||||
Sbjct: 10 gcaccttgat 1
>gb|CW483365.1|CW483365 fsbb001f244p16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f244p16, DNA
sequence
Length = 546
Score = 129 bits (65), Expect = 4e-028
Identities = 87/93 (93%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 60 agatggcggtgccgctgctgacgcagaagatcgtgaagaagagggtcaagcagttcaaga 119
||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 408 agatggcggtgcctctgctgacgaagaagatcgtgaagaagcgggtcaagcagttcaaga 467
Query: 120 gg-ccccatcttgaccgctacaagtgccttaag 151
|| ||||| || |||||||||||||||||||||
Sbjct: 468 ggcccccacctcgaccgctacaagtgccttaag 500
>gb|CW137061.1|CW137061 104_523_11119092_116_34871_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11119092, DNA
sequence
Length = 546
Score = 127 bits (64), Expect = 1e-027
Identities = 82/88 (93%)
Strand = Plus / Minus
Query: 60 agatggcggtgccgctgctgacgcagaagatcgtgaagaagagggtcaagcagttcaaga 119
||||| |||||||| |||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 280 agatgtcggtgccgttgctgacgcagatgatcgtgaagaagcgggtcaagcagttcaaga 221
Query: 120 ggccccatcttgaccgctacaagtgcct 147
||||||| || |||||||||||||||||
Sbjct: 220 ggccccacctcgaccgctacaagtgcct 193
>gb|CL194203.1|CL194203 104_418_10941467_114_32283_040 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10941467, DNA
sequence
Length = 715
Score = 125 bits (63), Expect = 6e-027
Identities = 105/119 (88%)
Strand = Plus / Plus
Query: 216 tgatgcccaacatcggatatggctccgacaagaagaccaggcactaccttcccaacaagt 275
||||||| ||||| ||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct: 1 tgatgcctaacattggatatggctctgacaagaagaccaggcactatctccccaacaagt 60
Query: 276 tcaaaaagtttgttgttcacaatgtctccgagctggagctgctgctgatgcacaacagg 334
| || |||||||| || || |||||||| ||||||||| |||| ||||||||||||||
Sbjct: 61 ttaagaagtttgtcgtgcataatgtctctgagctggagttgcttatgatgcacaacagg 119
Score = 87.7 bits (44), Expect = 1e-015
Identities = 113/136 (83%)
Strand = Plus / Plus
Query: 326 cacaacaggacttactgcgctgagatcgcccacaacgtgtccacccgcaagcgcaaggag 385
||||||||||| ||||| ||||| || || ||| | |||||||| |||||||||||
Sbjct: 243 cacaacaggacctactgtgctgaaattgcacacgatgtgtccactaagaagcgcaaggaa 302
Query: 386 attgtggagcgtgctgcgcaactggacatcgtggtcaccaacaagctcgccaggctccgc 445
||||||||||| ||||| || || ||||| ||||||||||||||||| ||| | || |||
Sbjct: 303 attgtggagcgagctgctcagcttgacattgtggtcaccaacaagcttgcccgtcttcgc 362
Query: 446 agccaagaggacgagt 461
||||| ||||| ||||
Sbjct: 363 agccaggaggatgagt 378
>gb|CL190316.1|CL190316 104_408_10906000_114_32484_058 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10906000, DNA
sequence
Length = 695
Score = 91.7 bits (46), Expect = 8e-017
Identities = 46/46 (100%)
Strand = Plus / Minus
Query: 150 agccaagctggcgcaggcccaagggtatcgactcccgcgtcaggcg 195
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 agccaagctggcgcaggcccaagggtatcgactcccgcgtcaggcg 5
>gb|BZ337132.1|BZ337132 ia85e02.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ia85e02 5', DNA sequence
Length = 398
Score = 87.7 bits (44), Expect = 1e-015
Identities = 77/88 (87%)
Strand = Plus / Plus
Query: 374 aagcgcaaggagattgtggagcgtgctgcgcaactggacatcgtggtcaccaacaagctc 433
||||||||||||||||| ||||| || | || || ||||| ||||||||||||||||||
Sbjct: 9 aagcgcaaggagattgttgagcgcgcctcacagcttgacattgtggtcaccaacaagctc 68
Query: 434 gccaggctccgcagccaagaggacgagt 461
|| |||||||||||||| ||||| ||||
Sbjct: 69 gctaggctccgcagccaggaggatgagt 96
>gb|AW284428.1|AW284428 LG1_289_E04.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 265
Score = 83.8 bits (42), Expect = 2e-014
Identities = 75/86 (87%)
Strand = Plus / Plus
Query: 376 gcgcaaggagattgtggagcgtgctgcgcaactggacatcgtggtcaccaacaagctcgc 435
||||||||||||||| ||||| || | || || ||||| ||||||||||||||||||||
Sbjct: 1 gcgcaaggagattgttgagcgcgcctcacagcttgacattgtggtcaccaacaagctcgc 60
Query: 436 caggctccgcagccaagaggacgagt 461
|||||||||||||| ||||| ||||
Sbjct: 61 taggctccgcagccaggaggatgagt 86
>gb|CW330152.1|CW330152 104_827_11480221_148_36012_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480221, DNA
sequence
Length = 123
Score = 73.8 bits (37), Expect = 2e-011
Identities = 88/105 (83%)
Strand = Plus / Plus
Query: 326 cacaacaggacttactgcgctgagatcgcccacaacgtgtccacccgcaagcgcaaggag 385
||||||||||| ||||| ||||| || || ||| | |||||||| |||||||||||
Sbjct: 18 cacaacaggacctactgtgctgaaattgcacacgatgtgtccactaagaagcgcaaggaa 77
Query: 386 attgtggagcgtgctgcgcaactggacatcgtggtcaccaacaag 430
||||||||||| ||||| || || ||||| |||||||||||||||
Sbjct: 78 attgtggagcgagctgctcagcttgacattgtggtcaccaacaag 122
>gb|CW330151.1|CW330151 104_827_11480221_116_36011_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480221, DNA
sequence
Length = 123
Score = 71.9 bits (36), Expect = 7e-011
Identities = 87/104 (83%)
Strand = Plus / Minus
Query: 326 cacaacaggacttactgcgctgagatcgcccacaacgtgtccacccgcaagcgcaaggag 385
||||||||||| ||||| ||||| || || ||| | |||||||| |||||||||||
Sbjct: 104 cacaacaggacctactgtgctgaaattgcacacgatgtgtccactaagaagcgcaaggaa 45
Query: 386 attgtggagcgtgctgcgcaactggacatcgtggtcaccaacaa 429
||||||||||| ||||| || || ||||| ||||||||||||||
Sbjct: 44 attgtggagcgagctgctcagcttgacattgtggtcaccaacaa 1
>gb|BF317674.1|BF317674 OV1_11_G08.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 200
Score = 71.9 bits (36), Expect = 7e-011
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 410 gacatcgtggtcaccaacaagctcgccaggctccgcagccaagaggacgagt 461
||||| |||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct: 19 gacattgtggtcaccaacaagctcgctaggctccgcagccaggaggatgagt 70
>gb|BF318078.1|BF318078 OV1_11_G08.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 279
Score = 71.9 bits (36), Expect = 7e-011
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 410 gacatcgtggtcaccaacaagctcgccaggctccgcagccaagaggacgagt 461
||||| |||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct: 19 gacattgtggtcaccaacaagctcgctaggctccgcagccaggaggatgagt 70
>gb|CF071010.1|CF071010 FE1_15_H05.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_15_H05_A002 3', mRNA sequence
Length = 720
Score = 63.9 bits (32), Expect = 2e-008
Identities = 123/152 (80%), Gaps = 1/152 (0%)
Strand = Plus / Plus
Query: 152 ccaagctggcgcaggcccaagggtatcgactcccgcgtcaggcgtaagttcaagggatgc 211
||||||||| ||||||| ||||||||||||||| | |||| | | |||||| | |
Sbjct: 48 ccaagctggtgcaggccaaagggtatcgactcctgtgtcataaggaggttcaacaggtca 107
Query: 212 accttgatgcccaacatcggatatggctccgacaagaagaccaggcactaccttcccaac 271
|| |||||||||||||| || |||| || |||||||| | |||||| |||||||| |||
Sbjct: 108 actttgatgcccaacattggttatgattctgacaagaa-agcaggcattaccttcctaac 166
Query: 272 aagttcaaaaagtttgttgttcacaatgtctc 303
| ||| || || |||||||| |||||||||||
Sbjct: 167 aggttgaagaaatttgttgtccacaatgtctc 198
>gb|CW361381.1|CW361381 fsbb001f029o22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f029o22, DNA
sequence
Length = 672
Score = 56.0 bits (28), Expect = 4e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 605 ccatctagttttgaccggacaccatgcagtgtggagcctt 644
|||||||||||||||| |||| |||| |||||||||||||
Sbjct: 10 ccatctagttttgacccgacatcatgaagtgtggagcctt 49
>gb|CL703679.2|CL703679 SP__Bb0004B09.f SP__Bb Sorghum propinquum genomic clone
SP__Bb0004B09 5', DNA sequence
Length = 778
Score = 50.1 bits (25), Expect = 3e-004
Identities = 74/89 (83%), Gaps = 1/89 (1%)
Strand = Plus / Minus
Query: 215 ttgatgcccaacatcggatatggctccgacaagaagaccaggcactaccttcccaacaag 274
|||||||||||||| || |||| || |||||||| | |||||| |||||||| |||| |
Sbjct: 354 ttgatgcccaacattggttatgattctgacaagaa-agcaggcattaccttcctaacagg 296
Query: 275 ttcaaaaagtttgttgttcacaatgtctc 303
|| || || |||||||| |||||| ||||
Sbjct: 295 ttgaagaaatttgttgtccacaatatctc 267
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 179,455
Number of Sequences: 832831
Number of extensions: 179455
Number of successful extensions: 52533
Number of sequences better than 0.5: 50
Number of HSP's better than 0.5 without gapping: 49
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 52455
Number of HSP's gapped (non-prelim): 64
length of query: 691
length of database: 491,359,669
effective HSP length: 20
effective length of query: 671
effective length of database: 474,703,049
effective search space: 318525745879
effective search space used: 318525745879
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)