BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2594433.2.1
(766 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF587835.1|BF587835 FM1_33_G06.g1_A003 Floral-Induced Me... 591 e-167
gb|BG356900.1|BG356900 OV2_11_D08.g1_A002 Ovary 2 (OV2) Sor... 563 e-159
gb|BG240756.1|BG240756 OV1_37_H04.g1_A002 Ovary 1 (OV1) Sor... 460 e-128
gb|CW135162.1|CW135162 104_519_11117699_116_34830_038 Sorgh... 272 4e-071
gb|CW135163.1|CW135163 104_519_11117699_148_34826_038 Sorgh... 272 4e-071
gb|CW413938.1|CW413938 fsbb001f113f13k0 Sorghum methylation... 272 4e-071
gb|CW458016.1|CW458016 fsbb001f204b14f0 Sorghum methylation... 272 4e-071
gb|CW177944.1|CW177944 104_591_11159301_116_36607_087 Sorgh... 206 2e-051
gb|CW228616.1|CW228616 104_668_11206476_148_37249_038 Sorgh... 167 2e-039
gb|CW086375.1|CW086375 104_430_10946936_114_33015_028 Sorgh... 159 5e-037
gb|CW086376.1|CW086376 104_430_10946936_116_33018_028 Sorgh... 159 5e-037
gb|CW155872.1|CW155872 104_558_11146371_116_36363_006 Sorgh... 159 5e-037
gb|CW155873.1|CW155873 104_558_11146371_148_36364_006 Sorgh... 159 5e-037
gb|CW291514.1|CW291514 104_771_11413593_116_35569_043 Sorgh... 159 5e-037
gb|CW291515.1|CW291515 104_771_11413593_148_35573_043 Sorgh... 159 5e-037
gb|CL197375.1|CL197375 104_424_10943704_114_32385_060 Sorgh... 72 8e-011
gb|CW082431.1|CW082431 104_424_10943704_114_32336_060 Sorgh... 72 8e-011
gb|CL197376.1|CL197376 104_424_10943704_116_32340_060 Sorgh... 64 2e-008
gb|CW228615.1|CW228615 104_668_11206476_116_37250_038 Sorgh... 64 2e-008
gb|CW024777.1|CW024777 104_168_10436519_1_30026 Sorghum met... 56 5e-006
>gb|BF587835.1|BF587835 FM1_33_G06.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 607
Score = 591 bits (298), Expect = e-167
Identities = 402/436 (92%), Gaps = 3/436 (0%)
Strand = Plus / Minus
Query: 262 ccttaacgaaccaccagaaaggttgcatcttctactagcaagcagtaagcttcgctatct 321
|||| |||||||||||||||| |||||||||||| |||||||||||||||||| ||||
Sbjct: 433 ccttcacgaaccaccagaaagattgcatcttcta---gcaagcagtaagcttcgcgatct 377
Query: 322 gttcaagcaggtacttggattcagctgcgtgctcgaccggcgcttcactcctcacagtga 381
||||||||||||||||||||||||||| | |||||||| |||||||||||||| ||||
Sbjct: 376 cttcaagcaggtacttggattcagctgcatagtcgaccggtgcttcactcctcacggtga 317
Query: 382 ttctctgccttttctcgttattgtattcatgctgtgtgacgctgacgcggaacaggtgag 441
| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 316 tcctctgccttttctcgttcatgtattcatgctgtgtgacgctgacgcggaaaaggtgag 257
Query: 442 gaacccaggtggcttccttgagcttcagagcataactgtcgtccccctcctctttcctga 501
||||||||||||||||||||||||| ||| | |||||||| || ||||||||||||||||
Sbjct: 256 gaacccaggtggcttccttgagcttgagaacgtaactgtcatcgccctcctctttcctga 197
Query: 502 tccgatcaagctcgtcggcgctgcagccaatgatcttctctgcatgctcgttgaacacag 561
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 196 tccgatcaagctcgtcagcgctgcagccaatgatcttctcggcatgctcgttgaacacgg 137
Query: 562 agacccatgcctcgccagtaggatcggagaccttgacgaccatgatgtatctcagtgagc 621
| ||||||||||| ||||| ||||| |||| ||||| |||||||||||||||||||||||
Sbjct: 136 acacccatgcctcaccagtgggatcagagatcttgaggaccatgatgtatctcagtgagc 77
Query: 622 attccgagtcattcttttggcatccctcgcaccagtatccagatccaaaagtttcagtca 681
|||| ||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 76 attcagagtcgttcttttggcatccctcacaccagtatccagatccaaaagcttcagtca 17
Query: 682 ccttcttgttgcaggt 697
||||||||||||||||
Sbjct: 16 ccttcttgttgcaggt 1
Score = 60.0 bits (30), Expect = 3e-007
Identities = 80/92 (86%), Gaps = 6/92 (6%)
Strand = Plus / Minus
Query: 144 gcttcatgcatcatgcttgaactgtcctagcatctgt--tgcttgacatcaaggtaacca 201
||||||||||||||||||||||||| |||||||||| ||||| |||||||||| | |
Sbjct: 604 gcttcatgcatcatgcttgaactgt-atagcatctgttgtgctt-acatcaaggtgaacc 547
Query: 202 aacctctacatatatcttacagaagtgctaaa 233
| | ||||| |||||||||||||||||||||
Sbjct: 546 agcatctac--atatcttacagaagtgctaaa 517
>gb|BG356900.1|BG356900 OV2_11_D08.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 463
Score = 563 bits (284), Expect = e-159
Identities = 381/412 (92%), Gaps = 1/412 (0%)
Strand = Plus / Minus
Query: 325 caagcaggtacttggattcagctgcgt-gctcgaccggcgcttcactcctcacagtgatt 383
||||||||||||||||||||||||| | | |||||||| |||||||||||||| |||||
Sbjct: 463 caagcaggtacttggattcagctgcatagttcgaccggtgcttcactcctcacggtgatc 404
Query: 384 ctctgccttttctcgttattgtattcatgctgtgtgacgctgacgcggaacaggtgagga 443
||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 403 ctctgccttttctcgttcatgtattcatgctgcgtgacgctgacgcggaaaaggtgagga 344
Query: 444 acccaggtggcttccttgagcttcagagcataactgtcgtccccctcctctttcctgatc 503
||||||||||||||||||||||| ||| |||||||| || ||||||||||||||||||
Sbjct: 343 acccaggtggcttccttgagcttgagaatgtaactgtcatcgccctcctctttcctgatc 284
Query: 504 cgatcaagctcgtcggcgctgcagccaatgatcttctctgcatgctcgttgaacacagag 563
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 283 cgatcaagctcgtcagcgctgcagccaatgatcttctcagcatgctcgttgaacacggac 224
Query: 564 acccatgcctcgccagtaggatcggagaccttgacgaccatgatgtatctcagtgagcat 623
||||||||||| ||||| ||||| |||| ||||| |||||| ||||||||||||||||||
Sbjct: 223 acccatgcctcaccagtgggatcagagatcttgaggaccattatgtatctcagtgagcat 164
Query: 624 tccgagtcattcttttggcatccctcgcaccagtatccagatccaaaagtttcagtcacc 683
|| ||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 163 tcagagtcgttcttttggcatccctcacaccagtatccagatccaaaagcttcagtcacc 104
Query: 684 ttcttgttgcaggtcttgcaagcacggtaccacatgttctggtcaggcttga 735
||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 103 ttcttgttgcaggtcttgcaagcacggtaccacatattctggtcaggcttga 52
>gb|BG240756.1|BG240756 OV1_37_H04.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 538
Score = 460 bits (232), Expect = e-128
Identities = 336/370 (90%), Gaps = 3/370 (0%)
Strand = Plus / Minus
Query: 262 ccttaacgaaccaccagaaaggttgcatcttctactagcaagcagtaagcttcgctatct 321
|||| |||||||||||||||| |||||||||||| |||||||||||||||||| ||||
Sbjct: 369 ccttcacgaaccaccagaaagattgcatcttcta---gcaagcagtaagcttcgcgatct 313
Query: 322 gttcaagcaggtacttggattcagctgcgtgctcgaccggcgcttcactcctcacagtga 381
||||||||||||||||||||||||||| | |||||||| |||||||||||||| ||||
Sbjct: 312 cttcaagcaggtacttggattcagctgcatagtcgaccggtgcttcactcctcacggtga 253
Query: 382 ttctctgccttttctcgttattgtattcatgctgtgtgacgctgacgcggaacaggtgag 441
| ||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||
Sbjct: 252 tcctctgccttttctcgttcatgtattcatgctgcgtgacgctgacgcggaaaaggtgag 193
Query: 442 gaacccaggtggcttccttgagcttcagagcataactgtcgtccccctcctctttcctga 501
||||||||||||||||||||||||| ||| |||||||| || ||||||||||||||||
Sbjct: 192 gaacccaggtggcttccttgagcttgagaatgtaactgtcatcgccctcctctttcctga 133
Query: 502 tccgatcaagctcgtcggcgctgcagccaatgatcttctctgcatgctcgttgaacacag 561
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 132 tccgatcaagctcgtcagcgctgcagccaatgatcttctcagcatgctcgttgaacacgg 73
Query: 562 agacccatgcctcgccagtaggatcggagaccttgacgaccatgatgtatctcagtgagc 621
| ||||||||||| ||||| ||||| |||| ||||| |||||| ||||||||||||||||
Sbjct: 72 acacccatgcctcaccagtgggatcagagatcttgaggaccattatgtatctcagtgagc 13
Query: 622 attccgagtc 631
|||| |||||
Sbjct: 12 attcagagtc 3
Score = 60.0 bits (30), Expect = 3e-007
Identities = 70/80 (87%), Gaps = 5/80 (6%)
Strand = Plus / Minus
Query: 156 atgcttgaactgtcctagcatctgt--tgcttgacatcaaggtaaccaaacctctacata 213
|||||||||||||| |||||||||| ||||| |||||||||| | | ||| ||||| |
Sbjct: 529 atgcttgaactgtcatagcatctgttgtgctt-acatcaaggtgaaccaacatctac--a 473
Query: 214 tatcttacagaagtgctaaa 233
||||||||||||||||||||
Sbjct: 472 tatcttacagaagtgctaaa 453
>gb|CW135162.1|CW135162 104_519_11117699_116_34830_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11117699, DNA
sequence
Length = 563
Score = 272 bits (137), Expect = 4e-071
Identities = 208/231 (90%), Gaps = 3/231 (1%)
Strand = Plus / Minus
Query: 262 ccttaacgaaccaccagaaaggttgcatcttctactagcaagcagtaagcttcgctatct 321
|||| |||||||||||||||| |||||||||||| |||||||||||||||||| ||||
Sbjct: 376 ccttcacgaaccaccagaaagattgcatcttcta---gcaagcagtaagcttcgcgatct 320
Query: 322 gttcaagcaggtacttggattcagctgcgtgctcgaccggcgcttcactcctcacagtga 381
||||||||||||||||||||||||||| | |||||||| |||||||||||||| ||||
Sbjct: 319 cttcaagcaggtacttggattcagctgcatagtcgaccggtgcttcactcctcacggtga 260
Query: 382 ttctctgccttttctcgttattgtattcatgctgtgtgacgctgacgcggaacaggtgag 441
| ||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||
Sbjct: 259 tcctctgccttttctcgttcatgtattcatgctgcgtgacgctgacgcggaaaaggtgag 200
Query: 442 gaacccaggtggcttccttgagcttcagagcataactgtcgtccccctcct 492
||||||||||||||||||||||||| ||| |||||||| || |||||||
Sbjct: 199 gaacccaggtggcttccttgagcttgagaatgtaactgtcatcgccctcct 149
Score = 79.8 bits (40), Expect = 3e-013
Identities = 43/44 (97%)
Strand = Plus / Minus
Query: 490 cctctttcctgatccgatcaagctcgtcggcgctgcagccaatg 533
|||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 44 cctctttcctgatccgatcaagctcgtcagcgctgcagccaatg 1
Score = 63.9 bits (32), Expect = 2e-008
Identities = 72/82 (87%), Gaps = 5/82 (6%)
Strand = Plus / Minus
Query: 154 tcatgcttgaactgtcctagcatctgt--tgcttgacatcaaggtaaccaaacctctaca 211
|||||||||||||||| |||||||||| ||||| |||||||||| | | ||| |||||
Sbjct: 538 tcatgcttgaactgtcatagcatctgttgtgctt-acatcaaggtgaaccaacatctac- 481
Query: 212 tatatcttacagaagtgctaaa 233
|||||||||||||||||||||
Sbjct: 480 -atatcttacagaagtgctaaa 460
>gb|CW135163.1|CW135163 104_519_11117699_148_34826_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11117699, DNA
sequence
Length = 563
Score = 272 bits (137), Expect = 4e-071
Identities = 208/231 (90%), Gaps = 3/231 (1%)
Strand = Plus / Plus
Query: 262 ccttaacgaaccaccagaaaggttgcatcttctactagcaagcagtaagcttcgctatct 321
|||| |||||||||||||||| |||||||||||| |||||||||||||||||| ||||
Sbjct: 186 ccttcacgaaccaccagaaagattgcatcttcta---gcaagcagtaagcttcgcgatct 242
Query: 322 gttcaagcaggtacttggattcagctgcgtgctcgaccggcgcttcactcctcacagtga 381
||||||||||||||||||||||||||| | |||||||| |||||||||||||| ||||
Sbjct: 243 cttcaagcaggtacttggattcagctgcatagtcgaccggtgcttcactcctcacggtga 302
Query: 382 ttctctgccttttctcgttattgtattcatgctgtgtgacgctgacgcggaacaggtgag 441
| ||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||
Sbjct: 303 tcctctgccttttctcgttcatgtattcatgctgcgtgacgctgacgcggaaaaggtgag 362
Query: 442 gaacccaggtggcttccttgagcttcagagcataactgtcgtccccctcct 492
||||||||||||||||||||||||| ||| |||||||| || |||||||
Sbjct: 363 gaacccaggtggcttccttgagcttgagaatgtaactgtcatcgccctcct 413
Score = 83.8 bits (42), Expect = 2e-014
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 490 cctctttcctgatccgatcaagctcgtcggcgctgcagccaatgat 535
|||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 518 cctctttcctgatccgatcaagctcgtcagcgctgcagccaatgat 563
Score = 63.9 bits (32), Expect = 2e-008
Identities = 72/82 (87%), Gaps = 5/82 (6%)
Strand = Plus / Plus
Query: 154 tcatgcttgaactgtcctagcatctgt--tgcttgacatcaaggtaaccaaacctctaca 211
|||||||||||||||| |||||||||| ||||| |||||||||| | | ||| |||||
Sbjct: 24 tcatgcttgaactgtcatagcatctgttgtgctt-acatcaaggtgaaccaacatctac- 81
Query: 212 tatatcttacagaagtgctaaa 233
|||||||||||||||||||||
Sbjct: 82 -atatcttacagaagtgctaaa 102
>gb|CW413938.1|CW413938 fsbb001f113f13k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f113f13, DNA
sequence
Length = 579
Score = 272 bits (137), Expect = 4e-071
Identities = 208/231 (90%), Gaps = 3/231 (1%)
Strand = Plus / Minus
Query: 262 ccttaacgaaccaccagaaaggttgcatcttctactagcaagcagtaagcttcgctatct 321
|||| |||||||||||||||| |||||||||||| |||||||||||||||||| ||||
Sbjct: 321 ccttcacgaaccaccagaaagattgcatcttcta---gcaagcagtaagcttcgcgatct 265
Query: 322 gttcaagcaggtacttggattcagctgcgtgctcgaccggcgcttcactcctcacagtga 381
||||||||||||||||||||||||||| | |||||||| |||||||||||||| ||||
Sbjct: 264 cttcaagcaggtacttggattcagctgcatagtcgaccggtgcttcactcctcacggtga 205
Query: 382 ttctctgccttttctcgttattgtattcatgctgtgtgacgctgacgcggaacaggtgag 441
| ||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||
Sbjct: 204 tcctctgccttttctcgttcatgtattcatgctgcgtgacgctgacgcggaaaaggtgag 145
Query: 442 gaacccaggtggcttccttgagcttcagagcataactgtcgtccccctcct 492
||||||||||||||||||||||||| ||| |||||||| || |||||||
Sbjct: 144 gaacccaggtggcttccttgagcttgagaatgtaactgtcatcgccctcct 94
Score = 63.9 bits (32), Expect = 2e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 39 acctgacaccatcaattagtcctaataatcctcactatttgctcaacaaagttgca 94
|||||||| ||| |||||||| |||||| |||| ||||||||||||||||| ||||
Sbjct: 575 acctgacatcatgaattagtcttaataaccctcgctatttgctcaacaaagctgca 520
Score = 63.9 bits (32), Expect = 2e-008
Identities = 72/82 (87%), Gaps = 5/82 (6%)
Strand = Plus / Minus
Query: 154 tcatgcttgaactgtcctagcatctgt--tgcttgacatcaaggtaaccaaacctctaca 211
|||||||||||||||| |||||||||| ||||| |||||||||| | | ||| |||||
Sbjct: 483 tcatgcttgaactgtcatagcatctgttgtgctt-acatcaaggtgaaccaacatctac- 426
Query: 212 tatatcttacagaagtgctaaa 233
|||||||||||||||||||||
Sbjct: 425 -atatcttacagaagtgctaaa 405
>gb|CW458016.1|CW458016 fsbb001f204b14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f204b14, DNA
sequence
Length = 738
Score = 272 bits (137), Expect = 4e-071
Identities = 208/231 (90%), Gaps = 3/231 (1%)
Strand = Plus / Plus
Query: 262 ccttaacgaaccaccagaaaggttgcatcttctactagcaagcagtaagcttcgctatct 321
|||| |||||||||||||||| |||||||||||| |||||||||||||||||| ||||
Sbjct: 99 ccttcacgaaccaccagaaagattgcatcttcta---gcaagcagtaagcttcgcgatct 155
Query: 322 gttcaagcaggtacttggattcagctgcgtgctcgaccggcgcttcactcctcacagtga 381
||||||||||||||||||||||||||| | |||||||| |||||||||||||| ||||
Sbjct: 156 cttcaagcaggtacttggattcagctgcatagtcgaccggtgcttcactcctcacggtga 215
Query: 382 ttctctgccttttctcgttattgtattcatgctgtgtgacgctgacgcggaacaggtgag 441
| ||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||
Sbjct: 216 tcctctgccttttctcgttcatgtattcatgctgcgtgacgctgacgcggaaaaggtgag 275
Query: 442 gaacccaggtggcttccttgagcttcagagcataactgtcgtccccctcct 492
||||||||||||||||||||||||| ||| |||||||| || |||||||
Sbjct: 276 gaacccaggtggcttccttgagcttgagaatgtaactgtcatcgccctcct 326
Score = 180 bits (91), Expect = 1e-043
Identities = 103/107 (96%)
Strand = Plus / Plus
Query: 612 ctcagtgagcattccgagtcattcttttggcatccctcgcaccagtatccagatccaaaa 671
|||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 628 ctcagtgagcattcagagtcgttcttttggcatccctcacaccagtatccagatccaaaa 687
Query: 672 gtttcagtcaccttcttgttgcaggtcttgcaagcacggtaccacat 718
| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gcttcagtcaccttcttgttgcaggtcttgcaagcacggtaccacat 734
Score = 167 bits (84), Expect = 2e-039
Identities = 114/124 (91%)
Strand = Plus / Plus
Query: 490 cctctttcctgatccgatcaagctcgtcggcgctgcagccaatgatcttctctgcatgct 549
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 431 cctctttcctgatccgatcaagctcgtcagcgctgcagccaatgatcttctcagcatgct 490
Query: 550 cgttgaacacagagacccatgcctcgccagtaggatcggagaccttgacgaccatgatgt 609
|||||||||| || ||||||||||| ||||| ||||| |||| ||||| |||||| ||||
Sbjct: 491 cgttgaacacggacacccatgcctcaccagtgggatcagagatcttgaggaccattatgt 550
Query: 610 atct 613
||||
Sbjct: 551 atct 554
>gb|CW177944.1|CW177944 104_591_11159301_116_36607_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11159301, DNA
sequence
Length = 690
Score = 206 bits (104), Expect = 2e-051
Identities = 119/124 (95%)
Strand = Plus / Plus
Query: 612 ctcagtgagcattccgagtcattcttttggcatccctcgcaccagtatccagatccaaaa 671
|||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 196 ctcagtgagcattcagagtcgttcttttggcatccctcacaccagtatccagatccaaaa 255
Query: 672 gtttcagtcaccttcttgttgcaggtcttgcaagcacggtaccacatgttctggtcaggc 731
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 256 gcttcagtcaccttcttgttgcaggtcttgcaagcacggtaccacatattctggtcaggc 315
Query: 732 ttga 735
||||
Sbjct: 316 ttga 319
Score = 163 bits (82), Expect = 3e-038
Identities = 112/122 (91%)
Strand = Plus / Plus
Query: 492 tctttcctgatccgatcaagctcgtcggcgctgcagccaatgatcttctctgcatgctcg 551
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 1 tctttcctgatccgatcaagctcgtcagcgctgcagccaatgatcttctcagcatgctcg 60
Query: 552 ttgaacacagagacccatgcctcgccagtaggatcggagaccttgacgaccatgatgtat 611
|||||||| || ||||||||||| ||||| ||||| |||| ||||| |||||| ||||||
Sbjct: 61 ttgaacacggacacccatgcctcaccagtgggatcagagatcttgaggaccattatgtat 120
Query: 612 ct 613
||
Sbjct: 121 ct 122
>gb|CW228616.1|CW228616 104_668_11206476_148_37249_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11206476, DNA
sequence
Length = 302
Score = 167 bits (84), Expect = 2e-039
Identities = 114/124 (91%)
Strand = Plus / Minus
Query: 490 cctctttcctgatccgatcaagctcgtcggcgctgcagccaatgatcttctctgcatgct 549
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 160 cctctttcctgatccgatcaagctcgtcagcgctgcagccaatgatcttctcagcatgct 101
Query: 550 cgttgaacacagagacccatgcctcgccagtaggatcggagaccttgacgaccatgatgt 609
|||||||||| || ||||||||||| ||||| ||||| |||| ||||| |||||| ||||
Sbjct: 100 cgttgaacacggacacccatgcctcaccagtgggatcagagatcttgaggaccattatgt 41
Query: 610 atct 613
||||
Sbjct: 40 atct 37
>gb|CW086375.1|CW086375 104_430_10946936_114_33015_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10946936, DNA
sequence
Length = 708
Score = 159 bits (80), Expect = 5e-037
Identities = 113/124 (91%)
Strand = Plus / Plus
Query: 490 cctctttcctgatccgatcaagctcgtcggcgctgcagccaatgatcttctctgcatgct 549
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
Sbjct: 362 cctctttcctgatccgatcaagctcgtcagcgctgtagccaatgatcttctctgcatgtt 421
Query: 550 cgttgaacacagagacccatgcctcgccagtaggatcggagaccttgacgaccatgatgt 609
|||||||||| || ||||||||||| ||| | ||||| || ||||||| |||||||||||
Sbjct: 422 cgttgaacacggaaacccatgcctcaccattgggatcagaaaccttgatgaccatgatgt 481
Query: 610 atct 613
||||
Sbjct: 482 atct 485
Score = 113 bits (57), Expect = 2e-023
Identities = 105/121 (86%)
Strand = Plus / Plus
Query: 615 agtgagcattccgagtcattcttttggcatccctcgcaccagtatccagatccaaaagtt 674
||||||||||| ||| ||||||| | ||||| ||| ||||||||||||| ||||||| |
Sbjct: 561 agtgagcattcagaggcattcttgttgcatctctcagaccagtatccagaaccaaaagct 620
Query: 675 tcagtcaccttcttgttgcaggtcttgcaagcacggtaccacatgttctggtcaggcttg 734
||||||||||| ||| |||||||||||||||||| |||||||| | ||| |||||||||
Sbjct: 621 tcagtcaccttgttgcagcaggtcttgcaagcacgataccacatatgctgctcaggcttg 680
Query: 735 a 735
|
Sbjct: 681 a 681
>gb|CW086376.1|CW086376 104_430_10946936_116_33018_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10946936, DNA
sequence
Length = 685
Score = 159 bits (80), Expect = 5e-037
Identities = 113/124 (91%)
Strand = Plus / Minus
Query: 490 cctctttcctgatccgatcaagctcgtcggcgctgcagccaatgatcttctctgcatgct 549
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
Sbjct: 474 cctctttcctgatccgatcaagctcgtcagcgctgtagccaatgatcttctctgcatgtt 415
Query: 550 cgttgaacacagagacccatgcctcgccagtaggatcggagaccttgacgaccatgatgt 609
|||||||||| || ||||||||||| ||| | ||||| || ||||||| |||||||||||
Sbjct: 414 cgttgaacacggaaacccatgcctcaccattgggatcagaaaccttgatgaccatgatgt 355
Query: 610 atct 613
||||
Sbjct: 354 atct 351
Score = 115 bits (58), Expect = 6e-024
Identities = 131/153 (85%), Gaps = 2/153 (1%)
Strand = Plus / Minus
Query: 615 agtgagcattccgagtcattcttttggcatccctcgcaccagtatccagatccaaaagtt 674
||||||||||| ||| ||||||| | ||||| ||| ||||||||||||| ||||||| |
Sbjct: 275 agtgagcattcagaggcattcttgttgcatctctcagaccagtatccagaaccaaaagct 216
Query: 675 tcagtcaccttcttgttgcaggtcttgcaagcacggtaccacatgttctggtcaggcttg 734
||||||||||| ||| |||||||||||||||||| |||||||| | ||| |||||||||
Sbjct: 215 tcagtcaccttgttgcagcaggtcttgcaagcacgataccacatatgctgctcaggcttg 156
Query: 735 a-gnggcttatg-gggcatacaaactaaagaaa 765
| | |||||||| ||||| |||||| ||||||
Sbjct: 155 atgtggcttatgatggcattcaaactgaagaaa 123
>gb|CW155872.1|CW155872 104_558_11146371_116_36363_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11146371, DNA
sequence
Length = 755
Score = 159 bits (80), Expect = 5e-037
Identities = 113/124 (91%)
Strand = Plus / Minus
Query: 490 cctctttcctgatccgatcaagctcgtcggcgctgcagccaatgatcttctctgcatgct 549
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
Sbjct: 350 cctctttcctgatccgatcaagctcgtcagcgctgtagccaatgatcttctctgcatgtt 291
Query: 550 cgttgaacacagagacccatgcctcgccagtaggatcggagaccttgacgaccatgatgt 609
|||||||||| || ||||||||||| ||| | ||||| || ||||||| |||||||||||
Sbjct: 290 cgttgaacacggaaacccatgcctcaccattgggatcagaaaccttgatgaccatgatgt 231
Query: 610 atct 613
||||
Sbjct: 230 atct 227
Score = 113 bits (57), Expect = 2e-023
Identities = 105/121 (86%)
Strand = Plus / Minus
Query: 615 agtgagcattccgagtcattcttttggcatccctcgcaccagtatccagatccaaaagtt 674
||||||||||| ||| ||||||| | ||||| ||| ||||||||||||| ||||||| |
Sbjct: 151 agtgagcattcagaggcattcttgttgcatctctcagaccagtatccagaaccaaaagct 92
Query: 675 tcagtcaccttcttgttgcaggtcttgcaagcacggtaccacatgttctggtcaggcttg 734
||||||||||| ||| |||||||||||||||||| |||||||| | ||| |||||||||
Sbjct: 91 tcagtcaccttgttgcagcaggtcttgcaagcacgataccacatatgctgctcaggcttg 32
Query: 735 a 735
|
Sbjct: 31 a 31
>gb|CW155873.1|CW155873 104_558_11146371_148_36364_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11146371, DNA
sequence
Length = 732
Score = 159 bits (80), Expect = 5e-037
Identities = 113/124 (91%)
Strand = Plus / Plus
Query: 490 cctctttcctgatccgatcaagctcgtcggcgctgcagccaatgatcttctctgcatgct 549
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
Sbjct: 604 cctctttcctgatccgatcaagctcgtcagcgctgtagccaatgatcttctctgcatgtt 663
Query: 550 cgttgaacacagagacccatgcctcgccagtaggatcggagaccttgacgaccatgatgt 609
|||||||||| || ||||||||||| ||| | ||||| || ||||||| |||||||||||
Sbjct: 664 cgttgaacacggaaacccatgcctcaccattgggatcagaaaccttgatgaccatgatgt 723
Query: 610 atct 613
||||
Sbjct: 724 atct 727
>gb|CW291514.1|CW291514 104_771_11413593_116_35569_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11413593, DNA
sequence
Length = 653
Score = 159 bits (80), Expect = 5e-037
Identities = 113/124 (91%)
Strand = Plus / Plus
Query: 490 cctctttcctgatccgatcaagctcgtcggcgctgcagccaatgatcttctctgcatgct 549
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
Sbjct: 307 cctctttcctgatccgatcaagctcgtcagcgctgtagccaatgatcttctctgcatgtt 366
Query: 550 cgttgaacacagagacccatgcctcgccagtaggatcggagaccttgacgaccatgatgt 609
|||||||||| || ||||||||||| ||| | ||||| || ||||||| |||||||||||
Sbjct: 367 cgttgaacacggaaacccatgcctcaccattgggatcagaaaccttgatgaccatgatgt 426
Query: 610 atct 613
||||
Sbjct: 427 atct 430
Score = 99.6 bits (50), Expect = 4e-019
Identities = 103/121 (85%)
Strand = Plus / Plus
Query: 615 agtgagcattccgagtcattcttttggcatccctcgcaccagtatccagatccaaaagtt 674
||||||||||| ||| ||||||| | ||||| ||| ||||||||||||| ||||||| |
Sbjct: 506 agtgagcattcagaggcattcttgttgcatctctcagaccagtatccagaaccaaaagct 565
Query: 675 tcagtcaccttcttgttgcaggtcttgcaagcacggtaccacatgttctggtcaggcttg 734
||||||||||| ||| || |||||||||||||| |||||||| | ||| |||||||||
Sbjct: 566 tcagtcaccttgttgcagcnagtcttgcaagcacgataccacatatgctgctcaggcttg 625
Query: 735 a 735
|
Sbjct: 626 a 626
>gb|CW291515.1|CW291515 104_771_11413593_148_35573_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11413593, DNA
sequence
Length = 646
Score = 159 bits (80), Expect = 5e-037
Identities = 113/124 (91%)
Strand = Plus / Minus
Query: 490 cctctttcctgatccgatcaagctcgtcggcgctgcagccaatgatcttctctgcatgct 549
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
Sbjct: 539 cctctttcctgatccgatcaagctcgtcagcgctgtagccaatgatcttctctgcatgtt 480
Query: 550 cgttgaacacagagacccatgcctcgccagtaggatcggagaccttgacgaccatgatgt 609
|||||||||| || ||||||||||| ||| | ||||| || ||||||| |||||||||||
Sbjct: 479 cgttgaacacggaaacccatgcctcaccattgggatcagaaaccttgatgaccatgatgt 420
Query: 610 atct 613
||||
Sbjct: 419 atct 416
Score = 115 bits (58), Expect = 6e-024
Identities = 131/153 (85%), Gaps = 2/153 (1%)
Strand = Plus / Minus
Query: 615 agtgagcattccgagtcattcttttggcatccctcgcaccagtatccagatccaaaagtt 674
||||||||||| ||| ||||||| | ||||| ||| ||||||||||||| ||||||| |
Sbjct: 340 agtgagcattcagaggcattcttgttgcatctctcagaccagtatccagaaccaaaagct 281
Query: 675 tcagtcaccttcttgttgcaggtcttgcaagcacggtaccacatgttctggtcaggcttg 734
||||||||||| ||| |||||||||||||||||| |||||||| | ||| |||||||||
Sbjct: 280 tcagtcaccttgttgcagcaggtcttgcaagcacgataccacatatgctgctcaggcttg 221
Query: 735 a-gnggcttatg-gggcatacaaactaaagaaa 765
| | |||||||| ||||| |||||| ||||||
Sbjct: 220 atgtggcttatgatggcattcaaactgaagaaa 188
>gb|CL197375.1|CL197375 104_424_10943704_114_32385_060 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943704, DNA
sequence
Length = 714
Score = 71.9 bits (36), Expect = 8e-011
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 38 gacctgacaccatcaattagtcctaataatcctcactatttgctcaacaaagttgcattg 97
||||||||| ||||||||||||||| |||||||| || ||||||||| ||||||| |||
Sbjct: 332 gacctgacatcatcaattagtcctagtaatcctcgctgcttgctcaactaagttgcgttg 391
Query: 98 gcacggaa 105
|||||||
Sbjct: 392 acacggaa 399
Score = 40.1 bits (20), Expect = 0.29
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 146 ttcatgcatcatgcttgaactgtc 169
|||||||||||||||| |||||||
Sbjct: 424 ttcatgcatcatgcttcaactgtc 447
>gb|CW082431.1|CW082431 104_424_10943704_114_32336_060 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943704, DNA
sequence
Length = 688
Score = 71.9 bits (36), Expect = 8e-011
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 38 gacctgacaccatcaattagtcctaataatcctcactatttgctcaacaaagttgcattg 97
||||||||| ||||||||||||||| |||||||| || ||||||||| ||||||| |||
Sbjct: 331 gacctgacatcatcaattagtcctagtaatcctcgctgcttgctcaactaagttgcgttg 390
Query: 98 gcacggaa 105
|||||||
Sbjct: 391 acacggaa 398
Score = 40.1 bits (20), Expect = 0.29
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 146 ttcatgcatcatgcttgaactgtc 169
|||||||||||||||| |||||||
Sbjct: 423 ttcatgcatcatgcttcaactgtc 446
>gb|CL197376.1|CL197376 104_424_10943704_116_32340_060 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943704, DNA
sequence
Length = 570
Score = 63.9 bits (32), Expect = 2e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 38 gacctgacaccatcaattagtcctaataatcctcactatttgctcaacaaagttgc 93
||||||||| ||||||||||||||| |||||||| || ||||||||| |||||||
Sbjct: 549 gacctgacatcatcaattagtcctagtaatcctcgctgcttgctcaactaagttgc 494
Score = 40.1 bits (20), Expect = 0.29
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 146 ttcatgcatcatgcttgaactgtc 169
|||||||||||||||| |||||||
Sbjct: 457 ttcatgcatcatgcttcaactgtc 434
>gb|CW228615.1|CW228615 104_668_11206476_116_37250_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11206476, DNA
sequence
Length = 574
Score = 63.9 bits (32), Expect = 2e-008
Identities = 72/82 (87%), Gaps = 5/82 (6%)
Strand = Plus / Plus
Query: 154 tcatgcttgaactgtcctagcatctgt--tgcttgacatcaaggtaaccaaacctctaca 211
|||||||||||||||| |||||||||| ||||| |||||||||| | | ||| |||||
Sbjct: 441 tcatgcttgaactgtcatagcatctgttgtgctt-acatcaaggtgaaccaacatctac- 498
Query: 212 tatatcttacagaagtgctaaa 233
|||||||||||||||||||||
Sbjct: 499 -atatcttacagaagtgctaaa 519
Score = 63.9 bits (32), Expect = 2e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 39 acctgacaccatcaattagtcctaataatcctcactatttgctcaacaaagttgca 94
|||||||| ||| |||||||| |||||| |||| ||||||||||||||||| ||||
Sbjct: 349 acctgacatcatgaattagtcttaataaccctcgctatttgctcaacaaagctgca 404
>gb|CW024777.1|CW024777 104_168_10436519_1_30026 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10436519, DNA
sequence
Length = 553
Score = 56.0 bits (28), Expect = 5e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 38 gacctgacaccatcaattagtcctaataatcctcactatttgctcaac 85
||||||||| ||||||||||||||| |||||||| || |||||||||
Sbjct: 504 gacctgacatcatcaattagtcctagtaatcctcgctgcttgctcaac 551
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 187,165
Number of Sequences: 832831
Number of extensions: 187165
Number of successful extensions: 48649
Number of sequences better than 0.5: 20
Number of HSP's better than 0.5 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48579
Number of HSP's gapped (non-prelim): 56
length of query: 766
length of database: 491,359,669
effective HSP length: 20
effective length of query: 746
effective length of database: 474,703,049
effective search space: 354128474554
effective search space used: 354128474554
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)