BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2594342.2.1
(715 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG053151.1|BG053151 RHIZ2_30_C08.g1_A003 Rhizome2 (RHIZ2... 488 e-136
gb|BG101857.1|BG101857 RHIZ2_23_C08.g1_A003 Rhizome2 (RHIZ2... 488 e-136
gb|BE361843.1|BE361843 DG1_82_D05.g1_A002 Dark Grown 1 (DG1... 480 e-134
gb|BG052745.1|BG052745 RHIZ2_14_C01.g1_A003 Rhizome2 (RHIZ2... 438 e-121
gb|BG649199.1|BG649199 EM1_78_A11.g1_A002 Embryo 1 (EM1) So... 404 e-111
gb|BG559588.1|BG559588 RHIZ2_69_E06.g1_A003 Rhizome2 (RHIZ2... 301 5e-080
gb|AW283772.1|AW283772 LG1_255_D09.g1_A002 Light Grown 1 (L... 293 1e-077
gb|CW478520.1|CW478520 fsbb001f236h05f0 Sorghum methylation... 234 9e-060
gb|BI141406.1|BI141406 IP1_55_E09.g1_A002 Immature pannicle... 206 2e-051
gb|BG049562.1|BG049562 EM1_5_G06.g1_A002 Embryo 1 (EM1) Sor... 101 9e-020
gb|CW029287.1|CW029287 104_256_10499589_114_30399 Sorghum m... 44 0.017
gb|CW225376.1|CW225376 104_663_11204318_148_37209_063 Sorgh... 40 0.27
gb|CW405235.1|CW405235 fsbb001f097l09k0 Sorghum methylation... 40 0.27
gb|CD429246.1|CD429246 ETH1_3_E11.b1_A002 Ethylene-treated ... 40 0.27
gb|CF480993.1|CF480993 POL1_69_G11.b1_A002 Pollen Sorghum b... 40 0.27
>gb|BG053151.1|BG053151 RHIZ2_30_C08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 584
Score = 488 bits (246), Expect = e-136
Identities = 294/310 (94%)
Strand = Plus / Minus
Query: 404 catcagactcccaagttgagcgtgtgcttgaggtccccgacgtgcagcgtgtggctgccc 463
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 catcaaactcccaagctgagcgtgtgcttgaggtccccgacgtgcagcgtgtggctgccg 254
Query: 464 agcgccaccttcctgttgcccagctcgtccacgacgctgaggtccttgcacacgtccacc 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 agcgccaccttcctgttgcccagctcgtccacgacgctgaggtccttgcacacgtccacc 194
Query: 524 ttgaacgccaccacgcccgcctgcccgggctccagcgacaccttttcgaagcccagcagg 583
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 193 ttgaacgccaccacgcccgcctgcccgggctccagcgacaccttctcgaaccccagcagg 134
Query: 584 ggcttcgccggcgcgttgggcaccgccggcggcgacgagaacaggaacaccgtgggcccg 643
||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct: 133 tgcttcgccggcgcgttgtgcaccgccggcggcgacgagaacaggaacaccgtgtgcgcg 74
Query: 644 ccggaccttctgcccgcgttccgcacccggaggggcacgttgaacgccaggccctcgcag 703
|||||| | |||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 73 ccggacatgtcgcccgcgttccgcacccggaggtgcacgtcgaacgccaggccctcgcag 14
Query: 704 agcgcgccct 713
|||||||||
Sbjct: 13 tgcgcgccct 4
Score = 214 bits (108), Expect = 8e-054
Identities = 159/175 (90%), Gaps = 2/175 (1%)
Strand = Plus / Minus
Query: 153 cccttccgaatttccaatccattacattaatcgtgattacaatcacaaatcgaccctcca 212
|||||| |||||||||||| |||||||| ||| ||| ||||||||||||||| ||||||
Sbjct: 560 cccttcggaatttccaatcgattacatttatcaggatcacaatcacaaatcgaacctcca 501
Query: 213 atgaatccaatgcctccaaacaaatgactaaaagctgcccgtggatccaattctttccca 272
|||||||||| ||||||||||||| ||||| ||||||||||||||||||||||| |||
Sbjct: 500 atgaatccaacacctccaaacaaatcactaa--gctgcccgtggatccaattctttgcca 443
Query: 273 acaggaagcctttattagacacctgccgaaccaattctgacaaccttctcttccc 327
|||||||||| |||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 442 acaggaagccgttattagacacctgccgaaccaattctgacaaacctctcttccc 388
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 382 tggtagccatttccctctcg 401
||||||||||||||||||||
Sbjct: 351 tggtagccatttccctctcg 332
>gb|BG101857.1|BG101857 RHIZ2_23_C08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 607
Score = 488 bits (246), Expect = e-136
Identities = 294/310 (94%)
Strand = Plus / Minus
Query: 404 catcagactcccaagttgagcgtgtgcttgaggtccccgacgtgcagcgtgtggctgccc 463
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 catcaaactcccaagctgagcgtgtgcttgaggtccccgacgtgcagcgtgtggctgccg 283
Query: 464 agcgccaccttcctgttgcccagctcgtccacgacgctgaggtccttgcacacgtccacc 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 agcgccaccttcctgttgcccagctcgtccacgacgctgaggtccttgcacacgtccacc 223
Query: 524 ttgaacgccaccacgcccgcctgcccgggctccagcgacaccttttcgaagcccagcagg 583
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 222 ttgaacgccaccacgcccgcctgcccgggctccagcgacaccttctcgaaccccagcagg 163
Query: 584 ggcttcgccggcgcgttgggcaccgccggcggcgacgagaacaggaacaccgtgggcccg 643
||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct: 162 tgcttcgccggcgcgttgtgcaccgccggcggcgacgagaacaggaacaccgtgtgcgcg 103
Query: 644 ccggaccttctgcccgcgttccgcacccggaggggcacgttgaacgccaggccctcgcag 703
|||||| | |||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 102 ccggacatgtcgcccgcgttccgcacccggaggtgcacgtcgaacgccaggccctcgcag 43
Query: 704 agcgcgccct 713
|||||||||
Sbjct: 42 tgcgcgccct 33
Score = 198 bits (100), Expect = 5e-049
Identities = 158/175 (90%), Gaps = 3/175 (1%)
Strand = Plus / Minus
Query: 153 cccttccgaatttccaatccattacattaatcgtgattacaatcacaaatcgaccctcca 212
|||||| |||||||||||| |||||||| ||| ||| ||||||||||||||| ||||||
Sbjct: 588 cccttcggaatttccaatcgattacatttatcaggatcacaatcacaaatcgaacctcca 529
Query: 213 atgaatccaatgcctccaaacaaatgactaaaagctgcccgtggatccaattctttccca 272
|||||||||| ||||||||||||| ||| ||||||||||||||||||||||||| ||
Sbjct: 528 atgaatccaacacctccaaacaaatcact--aagctgcccgtggatccaattctttgcc- 472
Query: 273 acaggaagcctttattagacacctgccgaaccaattctgacaaccttctcttccc 327
|||||||||| |||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 471 acaggaagccgttattagacacctgccgaaccaattctgacaaacctctcttccc 417
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 382 tggtagccatttccctctcg 401
||||||||||||||||||||
Sbjct: 380 tggtagccatttccctctcg 361
>gb|BE361843.1|BE361843 DG1_82_D05.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 657
Score = 480 bits (242), Expect = e-134
Identities = 293/310 (94%)
Strand = Plus / Minus
Query: 404 catcagactcccaagttgagcgtgtgcttgaggtccccgacgtgcagcgtgtggctgccc 463
||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 403 catcaaactcccaagctgagcgtgtgcttgaggtccccgacgtgcagcgtgtggttgccg 344
Query: 464 agcgccaccttcctgttgcccagctcgtccacgacgctgaggtccttgcacacgtccacc 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 agcgccaccttcctgttgcccagctcgtccacgacgctgaggtccttgcacacgtccacc 284
Query: 524 ttgaacgccaccacgcccgcctgcccgggctccagcgacaccttttcgaagcccagcagg 583
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 283 ttgaacgccaccacgcccgcctgcccgggctccagcgacaccttctcgaaccccagcagg 224
Query: 584 ggcttcgccggcgcgttgggcaccgccggcggcgacgagaacaggaacaccgtgggcccg 643
||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct: 223 tgcttcgccggcgcgttgtgcaccgccggcggcgacgagaacaggaacaccgtgtgcgcg 164
Query: 644 ccggaccttctgcccgcgttccgcacccggaggggcacgttgaacgccaggccctcgcag 703
|||||| | |||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 163 ccggacatgtcgcccgcgttccgcacccggaggtgcacgtcgaacgccaggccctcgcag 104
Query: 704 agcgcgccct 713
|||||||||
Sbjct: 103 tgcgcgccct 94
Score = 206 bits (104), Expect = 2e-051
Identities = 158/175 (90%), Gaps = 2/175 (1%)
Strand = Plus / Minus
Query: 153 cccttccgaatttccaatccattacattaatcgtgattacaatcacaaatcgaccctcca 212
|||||| |||||||||||| |||||||| ||| ||| ||||||||||||||| ||||||
Sbjct: 651 cccttcggaatttccaatcgattacatttatcaggatcacaatcacaaatcgaacctcca 592
Query: 213 atgaatccaatgcctccaaacaaatgactaaaagctgcccgtggatccaattctttccca 272
|||||||||| ||||||||||||| | ||| ||||||||||||||||||||||| |||
Sbjct: 591 atgaatccaacacctccaaacaaatcagtaa--gctgcccgtggatccaattctttgcca 534
Query: 273 acaggaagcctttattagacacctgccgaaccaattctgacaaccttctcttccc 327
|||||||||| |||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 533 acaggaagccgttattagacacctgccgaaccaattctgacaaacctctcttccc 479
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 382 tggtagccatttccctctcg 401
||||||||||||||||||||
Sbjct: 442 tggtagccatttccctctcg 423
>gb|BG052745.1|BG052745 RHIZ2_14_C01.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 565
Score = 438 bits (221), Expect = e-121
Identities = 260/273 (95%)
Strand = Plus / Minus
Query: 404 catcagactcccaagttgagcgtgtgcttgaggtccccgacgtgcagcgtgtggctgccc 463
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 catcaaactcccaagctgagcgtgtgcttgaggtccccgacgtgcagcgtgtggctgccg 214
Query: 464 agcgccaccttcctgttgcccagctcgtccacgacgctgaggtccttgcacacgtccacc 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 agcgccaccttcctgttgcccagctcgtccacgacgctgaggtccttgcacacgtccacc 154
Query: 524 ttgaacgccaccacgcccgcctgcccgggctccagcgacaccttttcgaagcccagcagg 583
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 153 ttgaacgccaccacgcccgcctgcccgggctccagcgacaccttctcgaaccccagcagg 94
Query: 584 ggcttcgccggcgcgttgggcaccgccggcggcgacgagaacaggaacaccgtgggcccg 643
||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct: 93 tgcttcgccggcgcgttgtgcaccgccggcggcgacgagaacaggaacaccgtgtgcgcg 34
Query: 644 ccggaccttctgcccgcgttccgcacccggagg 676
|||||| | ||||||||||||||||||||||
Sbjct: 33 ccggacatgtcgcccgcgttccgcacccggagg 1
Score = 214 bits (108), Expect = 8e-054
Identities = 159/175 (90%), Gaps = 2/175 (1%)
Strand = Plus / Minus
Query: 153 cccttccgaatttccaatccattacattaatcgtgattacaatcacaaatcgaccctcca 212
|||||| |||||||||||| |||||||| ||| ||| ||||||||||||||| ||||||
Sbjct: 520 cccttcggaatttccaatcgattacatttatcaggatcacaatcacaaatcgaacctcca 461
Query: 213 atgaatccaatgcctccaaacaaatgactaaaagctgcccgtggatccaattctttccca 272
|||||||||| ||||||||||||| ||||| ||||||||||||||||||||||| |||
Sbjct: 460 atgaatccaacacctccaaacaaatcactaa--gctgcccgtggatccaattctttgcca 403
Query: 273 acaggaagcctttattagacacctgccgaaccaattctgacaaccttctcttccc 327
|||||||||| |||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 402 acaggaagccgttattagacacctgccgaaccaattctgacaaacctctcttccc 348
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 382 tggtagccatttccctctcg 401
||||||||||||||||||||
Sbjct: 311 tggtagccatttccctctcg 292
>gb|BG649199.1|BG649199 EM1_78_A11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 522
Score = 404 bits (204), Expect = e-111
Identities = 234/244 (95%)
Strand = Plus / Minus
Query: 404 catcagactcccaagttgagcgtgtgcttgaggtccccgacgtgcagcgtgtggctgccc 463
||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 244 catcaaactcccaagctgagcgtgtgcttgaggtccccgacgtgcagcgtgtggttgccg 185
Query: 464 agcgccaccttcctgttgcccagctcgtccacgacgctgaggtccttgcacacgtccacc 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 agcgccaccttcctgttgcccagctcgtccacgacgctgaggtccttgcacacgtccacc 125
Query: 524 ttgaacgccaccacgcccgcctgcccgggctccagcgacaccttttcgaagcccagcagg 583
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 124 ttgaacgccaccacgcccgcctgcccgggctccagcgacaccttctcgaaccccagcagg 65
Query: 584 ggcttcgccggcgcgttgggcaccgccggcggcgacgagaacaggaacaccgtgggcccg 643
||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct: 64 tgcttcgccggcgcgttgtgcaccgccggcggcgacgagaacaggaacaccgtgtgcgcg 5
Query: 644 ccgg 647
||||
Sbjct: 4 ccgg 1
Score = 206 bits (104), Expect = 2e-051
Identities = 158/175 (90%), Gaps = 2/175 (1%)
Strand = Plus / Minus
Query: 153 cccttccgaatttccaatccattacattaatcgtgattacaatcacaaatcgaccctcca 212
|||||| |||||||||||| |||||||| ||| ||| ||||||||||||||| ||||||
Sbjct: 492 cccttcggaatttccaatcgattacatttatcaggatcacaatcacaaatcgaacctcca 433
Query: 213 atgaatccaatgcctccaaacaaatgactaaaagctgcccgtggatccaattctttccca 272
|||||||||| ||||||||||||| | ||| ||||||||||||||||||||||| |||
Sbjct: 432 atgaatccaacacctccaaacaaatcagtaa--gctgcccgtggatccaattctttgcca 375
Query: 273 acaggaagcctttattagacacctgccgaaccaattctgacaaccttctcttccc 327
|||||||||| |||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 374 acaggaagccgttattagacacctgccgaaccaattctgacaaacctctcttccc 320
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 382 tggtagccatttccctctcg 401
||||||||||||||||||||
Sbjct: 283 tggtagccatttccctctcg 264
>gb|BG559588.1|BG559588 RHIZ2_69_E06.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 281
Score = 301 bits (152), Expect = 5e-080
Identities = 161/164 (98%)
Strand = Plus / Minus
Query: 410 actcccaagttgagcgtgtgcttgaggtccccgacgtgcagcgtgtggctgcccagcgcc 469
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 165 actcccaagctgagcgtgtgcttgaggtccccgacgtgcagcgtgtggctgccgagcgcc 106
Query: 470 accttcctgttgcccagctcgtccacgacgctgaggtccttgcacacgtccaccttgaac 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 accttcctgttgcccagctcgtccacgacgctgaggtccttgcacacgtccaccttgaac 46
Query: 530 gccaccacgcccgcctgcccgggctccagcgacaccttttcgaa 573
|||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 45 gccaccacgcccgcctgcccgggctccagcgacaccttctcgaa 2
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 382 tggtagccatttccctctcg 401
||||||||||||||||||||
Sbjct: 209 tggtagccatttccctctcg 190
>gb|AW283772.1|AW283772 LG1_255_D09.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 481
Score = 293 bits (148), Expect = 1e-077
Identities = 160/164 (97%)
Strand = Plus / Minus
Query: 404 catcagactcccaagttgagcgtgtgcttgaggtccccgacgtgcagcgtgtggctgccc 463
||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 168 catcaaactcccaagctgagcgtgtgcttgaggtccccgacgtgcagcgtgtggttgccg 109
Query: 464 agcgccaccttcctgttgcccagctcgtccacgacgctgaggtccttgcacacgtccacc 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 agcgccaccttcctgttgcccagctcgtccacgacgctgaggtccttgcacacgtccacc 49
Query: 524 ttgaacgccaccacgcccgcctgcccgggctccagcgacacctt 567
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48 ttgaacgccaccacgcccgcctgcccgggctccagcgacacctt 5
Score = 206 bits (104), Expect = 2e-051
Identities = 158/175 (90%), Gaps = 2/175 (1%)
Strand = Plus / Minus
Query: 153 cccttccgaatttccaatccattacattaatcgtgattacaatcacaaatcgaccctcca 212
|||||| |||||||||||| |||||||| ||| ||| ||||||||||||||| ||||||
Sbjct: 416 cccttcggaatttccaatcgattacatttatcaggatcacaatcacaaatcgaacctcca 357
Query: 213 atgaatccaatgcctccaaacaaatgactaaaagctgcccgtggatccaattctttccca 272
|||||||||| ||||||||||||| | ||| ||||||||||||||||||||||| |||
Sbjct: 356 atgaatccaacacctccaaacaaatcagtaa--gctgcccgtggatccaattctttgcca 299
Query: 273 acaggaagcctttattagacacctgccgaaccaattctgacaaccttctcttccc 327
|||||||||| |||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 298 acaggaagccgttattagacacctgccgaaccaattctgacaaacctctcttccc 244
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 382 tggtagccatttccctctcg 401
||||||||||||||||||||
Sbjct: 207 tggtagccatttccctctcg 188
>gb|CW478520.1|CW478520 fsbb001f236h05f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f236h05, DNA
sequence
Length = 733
Score = 234 bits (118), Expect = 9e-060
Identities = 130/134 (97%)
Strand = Plus / Minus
Query: 404 catcagactcccaagttgagcgtgtgcttgaggtccccgacgtgcagcgtgtggctgccc 463
||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 134 catcaaactcccaagctgagcgtgtgcttgaggtccccgacgtgcagcgtgtggttgccg 75
Query: 464 agcgccaccttcctgttgcccagctcgtccacgacgctgaggtccttgcacacgtccacc 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 agcgccaccttcctgttgcccagctcgtccacgacgctgaggtccttgcacacgtccacc 15
Query: 524 ttgaacgccaccac 537
||||||||||||||
Sbjct: 14 ttgaacgccaccac 1
Score = 206 bits (104), Expect = 2e-051
Identities = 158/175 (90%), Gaps = 2/175 (1%)
Strand = Plus / Minus
Query: 153 cccttccgaatttccaatccattacattaatcgtgattacaatcacaaatcgaccctcca 212
|||||| |||||||||||| |||||||| ||| ||| ||||||||||||||| ||||||
Sbjct: 382 cccttcggaatttccaatcgattacatttatcaggatcacaatcacaaatcgaacctcca 323
Query: 213 atgaatccaatgcctccaaacaaatgactaaaagctgcccgtggatccaattctttccca 272
|||||||||| ||||||||||||| | ||| ||||||||||||||||||||||| |||
Sbjct: 322 atgaatccaacacctccaaacaaatcagtaa--gctgcccgtggatccaattctttgcca 265
Query: 273 acaggaagcctttattagacacctgccgaaccaattctgacaaccttctcttccc 327
|||||||||| |||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 264 acaggaagccgttattagacacctgccgaaccaattctgacaaacctctcttccc 210
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 382 tggtagccatttccctctcg 401
||||||||||||||||||||
Sbjct: 173 tggtagccatttccctctcg 154
>gb|BI141406.1|BI141406 IP1_55_E09.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 334
Score = 206 bits (104), Expect = 2e-051
Identities = 158/175 (90%), Gaps = 2/175 (1%)
Strand = Plus / Minus
Query: 153 cccttccgaatttccaatccattacattaatcgtgattacaatcacaaatcgaccctcca 212
|||||| |||||||||||| |||||||| ||| ||| ||||||||||||||| ||||||
Sbjct: 328 cccttcggaatttccaatcgattacatttatcaggatcacaatcacaaatcgaacctcca 269
Query: 213 atgaatccaatgcctccaaacaaatgactaaaagctgcccgtggatccaattctttccca 272
|||||||||| ||||||||||||| | ||| ||||||||||||||||||||||| |||
Sbjct: 268 atgaatccaacacctccaaacaaatcagtaa--gctgcccgtggatccaattctttgcca 211
Query: 273 acaggaagcctttattagacacctgccgaaccaattctgacaaccttctcttccc 327
|||||||||| |||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 210 acaggaagccgttattagacacctgccgaaccaattctgacaaacctctcttccc 156
Score = 119 bits (60), Expect = 4e-025
Identities = 75/80 (93%)
Strand = Plus / Minus
Query: 404 catcagactcccaagttgagcgtgtgcttgaggtccccgacgtgcagcgtgtggctgccc 463
||||| ||||||||| |||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 80 catcaaactcccaagctgagcgtgtgcttgaggtccccgacgtgcaacgtgtggttgccg 21
Query: 464 agcgccaccttcctgttgcc 483
||||||||||||||||||||
Sbjct: 20 agcgccaccttcctgttgcc 1
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 382 tggtagccatttccctctcg 401
||||||||||||||||||||
Sbjct: 119 tggtagccatttccctctcg 100
>gb|BG049562.1|BG049562 EM1_5_G06.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 152
Score = 101 bits (51), Expect = 9e-020
Identities = 105/122 (86%), Gaps = 2/122 (1%)
Strand = Plus / Minus
Query: 194 atcacaaatcgaccctccaatgaatccaatgcctccaaacaaatgactaaaagctgcccg 253
||||||||| || ||| |||||||||||| ||||||||||||| | ||| ||||||||
Sbjct: 152 atcacaaattgaaccttcaatgaatccaacacctccaaacaaatcaataa--gctgcccg 95
Query: 254 tggatccaattctttcccaacaggaagcctttattagacacctgccgaaccaattctgac 313
|||||||||| ||| |||||||||| || || ||| |||||||||||||||||| ||||
Sbjct: 94 gggatccaattttttgccaacaggaaaccgtttttaaacacctgccgaaccaattttgac 35
Query: 314 aa 315
||
Sbjct: 34 aa 33
>gb|CW029287.1|CW029287 104_256_10499589_114_30399 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10499589, DNA
sequence
Length = 552
Score = 44.1 bits (22), Expect = 0.017
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 511 gcacacgtccaccttgaacgccaccacgcc 540
|||||||||||||| ||||||||||||||
Sbjct: 37 gcacacgtccacctccaacgccaccacgcc 8
>gb|CW225376.1|CW225376 104_663_11204318_148_37209_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11204318, DNA
sequence
Length = 691
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 605 accgccggcggcgacgagaa 624
||||||||||||||||||||
Sbjct: 552 accgccggcggcgacgagaa 571
>gb|CW405235.1|CW405235 fsbb001f097l09k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f097l09, DNA
sequence
Length = 675
Score = 40.1 bits (20), Expect = 0.27
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 596 gcgttgggcaccgccggcggcgac 619
|||| |||||||||||||||||||
Sbjct: 158 gcgtcgggcaccgccggcggcgac 135
>gb|CD429246.1|CD429246 ETH1_3_E11.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_3_E11_A002 3', mRNA sequence
Length = 689
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 605 accgccggcggcgacgagaa 624
||||||||||||||||||||
Sbjct: 177 accgccggcggcgacgagaa 196
>gb|CF480993.1|CF480993 POL1_69_G11.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_69_G11_A002 3', mRNA sequence
Length = 567
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 605 accgccggcggcgacgagaa 624
||||||||||||||||||||
Sbjct: 38 accgccggcggcgacgagaa 57
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 199,150
Number of Sequences: 832831
Number of extensions: 199150
Number of successful extensions: 56784
Number of sequences better than 0.5: 15
Number of HSP's better than 0.5 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56733
Number of HSP's gapped (non-prelim): 41
length of query: 715
length of database: 491,359,669
effective HSP length: 20
effective length of query: 695
effective length of database: 474,703,049
effective search space: 329918619055
effective search space used: 329918619055
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)