BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2594211.2.1
(668 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CL177978.1|CL177978 104_385_10894229_116_31914_293 Sorgh... 276 2e-072
gb|CL177979.1|CL177979 104_385_10894229_148_31913_293 Sorgh... 276 2e-072
gb|CW325048.1|CW325048 104_819_11477484_116_35915_034 Sorgh... 276 2e-072
gb|CW426483.1|CW426483 fsbb001f137o10k0 Sorghum methylation... 276 2e-072
gb|BG355810.1|BG355810 EM1_17_A05.g1_A002 Embryo 1 (EM1) So... 276 2e-072
gb|BG556323.1|BG556323 EM1_68_E09.g1_A002 Embryo 1 (EM1) So... 276 2e-072
gb|BG556478.1|BG556478 EM1_37_F06.g1_A002 Embryo 1 (EM1) So... 178 4e-043
gb|BG322950.1|BG322950 EM1_13_B01.g1_A002 Embryo 1 (EM1) So... 174 7e-042
gb|CW325049.1|CW325049 104_819_11477484_148_35911_034 Sorgh... 135 6e-030
gb|CW038341.1|CW038341 104_270_10504868_114_30385 Sorghum m... 98 1e-018
gb|CW075930.1|CW075930 104_363_10809810_114_31800_258 Sorgh... 98 1e-018
gb|CW075931.1|CW075931 104_363_10809810_116_31801_258 Sorgh... 98 1e-018
gb|BG051930.1|BG051930 RHIZ2_6_F11.g1_A003 Rhizome2 (RHIZ2)... 98 1e-018
gb|BG355666.1|BG355666 EM1_16_F05.g1_A002 Embryo 1 (EM1) So... 98 1e-018
gb|CF430219.1|CF430219 PH1_27_A08.b1_A002 Phosphorous-defic... 98 1e-018
gb|CF430353.1|CF430353 PH1_27_A08.g1_A002 Phosphorous-defic... 98 1e-018
gb|CN136158.1|CN136158 OX1_41_D05.b1_A002 Oxidatively-stres... 98 1e-018
gb|CN136232.1|CN136232 OX1_41_D05.g1_A002 Oxidatively-stres... 98 1e-018
gb|CX606996.1|CX606996 ANR1_6_C12.b1_A002 Anaerobic roots S... 98 1e-018
gb|CX623191.1|CX623191 GABR1_68_F03.b1_A002 GA- or brassino... 98 1e-018
gb|CL172101.1|CL172101 104_374_10889911_148_31774_199 Sorgh... 94 2e-017
gb|CW059494.1|CW059494 104_302_10519350_114_30165 Sorghum m... 94 2e-017
gb|CW143277.1|CW143277 104_535_11137329_148_34958_047 Sorgh... 94 2e-017
gb|CW177877.1|CW177877 104_591_11159265_116_36611_041 Sorgh... 94 2e-017
gb|CW318661.1|CW318661 104_811_11474070_148_35883_031 Sorgh... 94 2e-017
gb|BE917670.1|BE917670 OV1_6_F07.g1_A002 Ovary 1 (OV1) Sorg... 94 2e-017
gb|BG052868.1|BG052868 RHIZ2_15_B11.g1_A003 Rhizome2 (RHIZ2... 94 2e-017
gb|BG464039.1|BG464039 EM1_52_H10.g1_A002 Embryo 1 (EM1) So... 94 2e-017
gb|BG557559.1|BG557559 EM1_53_A06.g1_A002 Embryo 1 (EM1) So... 94 2e-017
gb|CD432755.1|CD432755 ETH1_33_A06.b1_A002 Ethylene-treated... 94 2e-017
gb|CW392761.1|CW392761 fsbb001f079i10k0 Sorghum methylation... 92 8e-017
gb|BG053558.1|BG053558 RHIZ2_10_G02.g1_A003 Rhizome2 (RHIZ2... 90 3e-016
gb|CX610991.1|CX610991 ANR1_22_B08.b1_A002 Anaerobic roots ... 90 3e-016
gb|CW386714.1|CW386714 fsbb001f070m01f0 Sorghum methylation... 86 5e-015
gb|BI075536.1|BI075536 IP1_21_G05.g1_A002 Immature pannicle... 86 5e-015
gb|CN151243.1|CN151243 WOUND1_74_G01.b1_A002 Wounded leaves... 86 5e-015
gb|CW479320.1|CW479320 fsbb001f237l21f0 Sorghum methylation... 84 2e-014
gb|CL172100.1|CL172100 104_374_10889911_116_31775_199 Sorgh... 72 7e-011
gb|CX611078.1|CX611078 ANR1_22_B08.g1_A002 Anaerobic roots ... 64 2e-008
gb|CW032533.1|CW032533 104_261_10501433_114_30363 Sorghum m... 58 1e-006
gb|CW231485.1|CW231485 104_680_11211147_116_37343_004 Sorgh... 58 1e-006
gb|BG240827.1|BG240827 OV1_38_G09.g1_A002 Ovary 1 (OV1) Sor... 58 1e-006
gb|BI140900.1|BI140900 IP1_40_E08.b1_A002 Immature pannicle... 58 1e-006
gb|BG356043.2|BG356043 EM1_19_F04.g1_A002 Embryo 1 (EM1) So... 58 1e-006
gb|CF429993.1|CF429993 PH1_25_G07.g1_A002 Phosphorous-defic... 58 1e-006
gb|CN142636.1|CN142636 WOUND1_11_F01.b1_A002 Wounded leaves... 58 1e-006
gb|CX607081.1|CX607081 ANR1_6_C12.g1_A002 Anaerobic roots S... 58 1e-006
gb|DN551840.1|DN551840 pSPR-RT-A-H2_G06_S131 pSPR Sorghum p... 58 1e-006
gb|CL182296.1|CL182296 104_393_10897331_148_31921_323 Sorgh... 40 0.25
gb|CW132505.1|CW132505 104_515_11116248_116_34797_082 Sorgh... 40 0.25
gb|CW215800.1|CW215800 104_648_11194751_116_37117_092 Sorgh... 40 0.25
gb|CW215801.1|CW215801 104_648_11194751_148_37118_092 Sorgh... 40 0.25
gb|BG356953.1|BG356953 OV2_12_A12.g1_A002 Ovary 2 (OV2) Sor... 40 0.25
>gb|CL177978.1|CL177978 104_385_10894229_116_31914_293 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10894229, DNA
sequence
Length = 704
Score = 276 bits (139), Expect = 2e-072
Identities = 173/183 (94%), Gaps = 1/183 (0%)
Strand = Plus / Minus
Query: 487 gggtgttcagttgaactgggccccgctgaaggtctggccgaagccccagccgcgcggggc 546
||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||
Sbjct: 456 gggtgttcagttgaactgggcgccgctgaaggtctggccgaaggcccagccgcggggggc 397
Query: 547 agcgttgctggagaccacggagcggccgtcgctggtggtgacgcggaaggagagggcctg 606
|||||| |||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct: 396 ggcgttgttggagaccacggagcggccgtcgctggtggtgacgcggaacgagagcgcttg 337
Query: 607 cccgtccaggagcgtgttgctctgccagttctggccccag-tgcgcgacagggcctgcca 665
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 336 cccgtccaggagcgtgttgctctgccagttctggccccagttgcgcgacagcgcctgcca 277
Query: 666 ccc 668
|||
Sbjct: 276 ccc 274
Score = 135 bits (68), Expect = 6e-030
Identities = 127/144 (88%), Gaps = 7/144 (4%)
Strand = Plus / Minus
Query: 284 ccagcacgacaaaacccgcgctaatactaggcctaaa-ctactggtaattccccagatcc 342
||||||||| |||||| |||||||||||||||||||| ||||||||||||||| || ||
Sbjct: 668 ccagcacgataaaacctgcgctaatactaggcctaaaactactggtaattcccaggagcc 609
Query: 343 aaagcgagatgcaccattcataaaaccatggcgc--ctctcggcaagctccgagtgaggg 400
|| ||||||||||||| ||||||||||||||||| ||||||||||||||| | || |||
Sbjct: 608 aatgcgagatgcaccactcataaaaccatggcgcctctctcggcaagctccaattggggg 549
Query: 401 tg----gacgactctaccacgacc 420
|| ||||||||||||||||||
Sbjct: 548 tggaccgacgactctaccacgacc 525
>gb|CL177979.1|CL177979 104_385_10894229_148_31913_293 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10894229, DNA
sequence
Length = 731
Score = 276 bits (139), Expect = 2e-072
Identities = 173/183 (94%), Gaps = 1/183 (0%)
Strand = Plus / Plus
Query: 487 gggtgttcagttgaactgggccccgctgaaggtctggccgaagccccagccgcgcggggc 546
||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||
Sbjct: 545 gggtgttcagttgaactgggcgccgctgaaggtctggccgaaggcccagccgcggggggc 604
Query: 547 agcgttgctggagaccacggagcggccgtcgctggtggtgacgcggaaggagagggcctg 606
|||||| |||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct: 605 ggcgttgttggagaccacggagcggccgtcgctggtggtgacgcggaacgagagcgcttg 664
Query: 607 cccgtccaggagcgtgttgctctgccagttctggccccag-tgcgcgacagggcctgcca 665
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 665 cccgtccaggagcgtgttgctctgccagttctggccccagttgcgcgacagcgcctgcca 724
Query: 666 ccc 668
|||
Sbjct: 725 ccc 727
Score = 135 bits (68), Expect = 6e-030
Identities = 127/144 (88%), Gaps = 7/144 (4%)
Strand = Plus / Plus
Query: 284 ccagcacgacaaaacccgcgctaatactaggcctaaa-ctactggtaattccccagatcc 342
||||||||| |||||| |||||||||||||||||||| ||||||||||||||| || ||
Sbjct: 333 ccagcacgataaaacctgcgctaatactaggcctaaaactactggtaattcccaggagcc 392
Query: 343 aaagcgagatgcaccattcataaaaccatggcgc--ctctcggcaagctccgagtgaggg 400
|| ||||||||||||| ||||||||||||||||| ||||||||||||||| | || |||
Sbjct: 393 aatgcgagatgcaccactcataaaaccatggcgcctctctcggcaagctccaattggggg 452
Query: 401 tg----gacgactctaccacgacc 420
|| ||||||||||||||||||
Sbjct: 453 tggaccgacgactctaccacgacc 476
Score = 129 bits (65), Expect = 4e-028
Identities = 112/124 (90%), Gaps = 4/124 (3%)
Strand = Plus / Plus
Query: 120 caaaacatctcatc-cgaaagaggccatcaccatgagaccccacaaatgcttaattggcg 178
||||||||||| || | |||||||||||||||||||| ||| | || ||||||||||||
Sbjct: 172 caaaacatctcttctcaaaagaggccatcaccatgaggcccaa--aacgcttaattggcg 229
Query: 179 ggtgataaaaggcggcctacctccgttaatctgcaagccagcc-ttaccaccacttccaa 237
||||||| |||||||||| ||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 230 ggtgatacaaggcggcctgcctccgttaatctccaagccagcctttaccaccacttccaa 289
Query: 238 ttcc 241
||||
Sbjct: 290 ttcc 293
>gb|CW325048.1|CW325048 104_819_11477484_116_35915_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11477484, DNA
sequence
Length = 612
Score = 276 bits (139), Expect = 2e-072
Identities = 173/183 (94%), Gaps = 1/183 (0%)
Strand = Plus / Minus
Query: 487 gggtgttcagttgaactgggccccgctgaaggtctggccgaagccccagccgcgcggggc 546
||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||
Sbjct: 363 gggtgttcagttgaactgggcgccgctgaaggtctggccgaaggcccagccgcggggggc 304
Query: 547 agcgttgctggagaccacggagcggccgtcgctggtggtgacgcggaaggagagggcctg 606
|||||| |||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct: 303 ggcgttgttggagaccacggagcggccgtcgctggtggtgacgcggaacgagagcgcttg 244
Query: 607 cccgtccaggagcgtgttgctctgccagttctggccccag-tgcgcgacagggcctgcca 665
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 243 cccgtccaggagcgtgttgctctgccagttctggccccagttgcgcgacagcgcctgcca 184
Query: 666 ccc 668
|||
Sbjct: 183 ccc 181
Score = 135 bits (68), Expect = 6e-030
Identities = 127/144 (88%), Gaps = 7/144 (4%)
Strand = Plus / Minus
Query: 284 ccagcacgacaaaacccgcgctaatactaggcctaaa-ctactggtaattccccagatcc 342
||||||||| |||||| |||||||||||||||||||| ||||||||||||||| || ||
Sbjct: 575 ccagcacgataaaacctgcgctaatactaggcctaaaactactggtaattcccaggagcc 516
Query: 343 aaagcgagatgcaccattcataaaaccatggcgcc--tctcggcaagctccgagtgaggg 400
|| ||||||||||||| |||||||||||||||||| |||||||||||||| | || |||
Sbjct: 515 aatgcgagatgcaccactcataaaaccatggcgcctctctcggcaagctccaattggggg 456
Query: 401 tg----gacgactctaccacgacc 420
|| ||||||||||||||||||
Sbjct: 455 tggaccgacgactctaccacgacc 432
>gb|CW426483.1|CW426483 fsbb001f137o10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f137o10, DNA
sequence
Length = 727
Score = 276 bits (139), Expect = 2e-072
Identities = 173/183 (94%), Gaps = 1/183 (0%)
Strand = Plus / Minus
Query: 487 gggtgttcagttgaactgggccccgctgaaggtctggccgaagccccagccgcgcggggc 546
||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||
Sbjct: 350 gggtgttcagttgaactgggcgccgctgaaggtctggccgaaggcccagccgcggggggc 291
Query: 547 agcgttgctggagaccacggagcggccgtcgctggtggtgacgcggaaggagagggcctg 606
|||||| |||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct: 290 ggcgttgttggagaccacggagcggccgtcgctggtggtgacgcggaacgagagcgcttg 231
Query: 607 cccgtccaggagcgtgttgctctgccagttctggccccag-tgcgcgacagggcctgcca 665
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 230 cccgtccaggagcgtgttgctctgccagttctggccccagttgcgcgacagcgcctgcca 171
Query: 666 ccc 668
|||
Sbjct: 170 ccc 168
Score = 135 bits (68), Expect = 6e-030
Identities = 127/144 (88%), Gaps = 7/144 (4%)
Strand = Plus / Minus
Query: 284 ccagcacgacaaaacccgcgctaatactaggcctaaa-ctactggtaattccccagatcc 342
||||||||| |||||| |||||||||||||||||||| ||||||||||||||| || ||
Sbjct: 562 ccagcacgataaaacctgcgctaatactaggcctaaaactactggtaattcccaggagcc 503
Query: 343 aaagcgagatgcaccattcataaaaccatggcgc--ctctcggcaagctccgagtgaggg 400
|| ||||||||||||| ||||||||||||||||| ||||||||||||||| | || |||
Sbjct: 502 aatgcgagatgcaccactcataaaaccatggcgcctctctcggcaagctccaattggggg 443
Query: 401 tg----gacgactctaccacgacc 420
|| ||||||||||||||||||
Sbjct: 442 tggaccgacgactctaccacgacc 419
Score = 129 bits (65), Expect = 4e-028
Identities = 112/124 (90%), Gaps = 4/124 (3%)
Strand = Plus / Minus
Query: 120 caaaacatctcatc-cgaaagaggccatcaccatgagaccccacaaatgcttaattggcg 178
||||||||||| || | |||||||||||||||||||| ||| | || ||||||||||||
Sbjct: 723 caaaacatctcttctcaaaagaggccatcaccatgaggcccaa--aacgcttaattggcg 666
Query: 179 ggtgataaaaggcggcctacctccgttaatctgcaagccagcc-ttaccaccacttccaa 237
||||||| |||||||||| ||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 665 ggtgatacaaggcggcctgcctccgttaatctccaagccagcctttaccaccacttccaa 606
Query: 238 ttcc 241
||||
Sbjct: 605 ttcc 602
>gb|BG355810.1|BG355810 EM1_17_A05.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 611
Score = 276 bits (139), Expect = 2e-072
Identities = 173/183 (94%), Gaps = 1/183 (0%)
Strand = Plus / Minus
Query: 487 gggtgttcagttgaactgggccccgctgaaggtctggccgaagccccagccgcgcggggc 546
||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||
Sbjct: 203 gggtgttcagttgaactgggcgccgctgaaggtctggccgaaggcccagccgcggggggc 144
Query: 547 agcgttgctggagaccacggagcggccgtcgctggtggtgacgcggaaggagagggcctg 606
|||||| |||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct: 143 ggcgttgttggagaccacggagcggccgtcgctggtggtgacgcggaacgagagcgcttg 84
Query: 607 cccgtccaggagcgtgttgctctgccagttctggccccag-tgcgcgacagggcctgcca 665
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 83 cccgtccaggagcgtgttgctctgccagttctggccccagttgcgcgacagcgcctgcca 24
Query: 666 ccc 668
|||
Sbjct: 23 ccc 21
Score = 135 bits (68), Expect = 6e-030
Identities = 127/144 (88%), Gaps = 7/144 (4%)
Strand = Plus / Minus
Query: 284 ccagcacgacaaaacccgcgctaatactaggcctaaa-ctactggtaattccccagatcc 342
||||||||| |||||| |||||||||||||||||||| ||||||||||||||| || ||
Sbjct: 415 ccagcacgataaaacctgcgctaatactaggcctaaaactactggtaattcccaggagcc 356
Query: 343 aaagcgagatgcaccattcataaaaccatggcgcc--tctcggcaagctccgagtgaggg 400
|| ||||||||||||| |||||||||||||||||| |||||||||||||| | || |||
Sbjct: 355 aatgcgagatgcaccactcataaaaccatggcgcctctctcggcaagctccaattggggg 296
Query: 401 tg----gacgactctaccacgacc 420
|| ||||||||||||||||||
Sbjct: 295 tggaccgacgactctaccacgacc 272
Score = 129 bits (65), Expect = 4e-028
Identities = 112/124 (90%), Gaps = 4/124 (3%)
Strand = Plus / Minus
Query: 120 caaaacatctcatc-cgaaagaggccatcaccatgagaccccacaaatgcttaattggcg 178
||||||||||| || | |||||||||||||||||||| ||| | || ||||||||||||
Sbjct: 576 caaaacatctcttctcaaaagaggccatcaccatgaggcccaa--aacgcttaattggcg 519
Query: 179 ggtgataaaaggcggcctacctccgttaatctgcaagccagcc-ttaccaccacttccaa 237
||||||| |||||||||| ||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 518 ggtgatacaaggcggcctgcctccgttaatctccaagccagcctttaccaccacttccaa 459
Query: 238 ttcc 241
||||
Sbjct: 458 ttcc 455
>gb|BG556323.1|BG556323 EM1_68_E09.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 653
Score = 276 bits (139), Expect = 2e-072
Identities = 173/183 (94%), Gaps = 1/183 (0%)
Strand = Plus / Minus
Query: 487 gggtgttcagttgaactgggccccgctgaaggtctggccgaagccccagccgcgcggggc 546
||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||
Sbjct: 239 gggtgttcagttgaactgggcgccgctgaaggtctggccgaaggcccagccgcggggggc 180
Query: 547 agcgttgctggagaccacggagcggccgtcgctggtggtgacgcggaaggagagggcctg 606
|||||| |||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct: 179 ggcgttgttggagaccacggagcggccgtcgctggtggtgacgcggaacgagagcgcttg 120
Query: 607 cccgtccaggagcgtgttgctctgccagttctggccccag-tgcgcgacagggcctgcca 665
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 119 cccgtccaggagcgtgttgctctgccagttctggccccagttgcgcgacagcgcctgcca 60
Query: 666 ccc 668
|||
Sbjct: 59 ccc 57
Score = 135 bits (68), Expect = 6e-030
Identities = 127/144 (88%), Gaps = 7/144 (4%)
Strand = Plus / Minus
Query: 284 ccagcacgacaaaacccgcgctaatactaggcctaaa-ctactggtaattccccagatcc 342
||||||||| |||||| |||||||||||||||||||| ||||||||||||||| || ||
Sbjct: 451 ccagcacgataaaacctgcgctaatactaggcctaaaactactggtaattcccaggagcc 392
Query: 343 aaagcgagatgcaccattcataaaaccatggcgcc--tctcggcaagctccgagtgaggg 400
|| ||||||||||||| |||||||||||||||||| |||||||||||||| | || |||
Sbjct: 391 aatgcgagatgcaccactcataaaaccatggcgcctctctcggcaagctccaattggggg 332
Query: 401 tg----gacgactctaccacgacc 420
|| ||||||||||||||||||
Sbjct: 331 tggaccgacgactctaccacgacc 308
Score = 129 bits (65), Expect = 4e-028
Identities = 112/124 (90%), Gaps = 4/124 (3%)
Strand = Plus / Minus
Query: 120 caaaacatctcatc-cgaaagaggccatcaccatgagaccccacaaatgcttaattggcg 178
||||||||||| || | |||||||||||||||||||| ||| | || ||||||||||||
Sbjct: 612 caaaacatctcttctcaaaagaggccatcaccatgaggcccaa--aacgcttaattggcg 555
Query: 179 ggtgataaaaggcggcctacctccgttaatctgcaagccagcc-ttaccaccacttccaa 237
||||||| |||||||||| ||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 554 ggtgatacaaggcggcctgcctccgttaatctccaagccagcctttaccaccacttccaa 495
Query: 238 ttcc 241
||||
Sbjct: 494 ttcc 491
>gb|BG556478.1|BG556478 EM1_37_F06.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 357
Score = 178 bits (90), Expect = 4e-043
Identities = 108/114 (94%)
Strand = Plus / Minus
Query: 487 gggtgttcagttgaactgggccccgctgaaggtctggccgaagccccagccgcgcggggc 546
||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||
Sbjct: 121 gggtgttcagttgaactgggcgccgctgaaggtctggccgaaggcccagccgcggggggc 62
Query: 547 agcgttgctggagaccacggagcggccgtcgctggtggtgacgcggaaggagag 600
|||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 61 ggcgttgttggagaccacggagcggccgtcgctggtggtgacgcggaacgagag 8
Score = 135 bits (68), Expect = 6e-030
Identities = 127/144 (88%), Gaps = 7/144 (4%)
Strand = Plus / Minus
Query: 284 ccagcacgacaaaacccgcgctaatactaggcctaaa-ctactggtaattccccagatcc 342
||||||||| |||||| |||||||||||||||||||| ||||||||||||||| || ||
Sbjct: 333 ccagcacgataaaacctgcgctaatactaggcctaaaactactggtaattcccaggagcc 274
Query: 343 aaagcgagatgcaccattcataaaaccatggcgc--ctctcggcaagctccgagtgaggg 400
|| ||||||||||||| ||||||||||||||||| ||||||||||||||| | || |||
Sbjct: 273 aatgcgagatgcaccactcataaaaccatggcgcctctctcggcaagctccaattggggg 214
Query: 401 tg----gacgactctaccacgacc 420
|| ||||||||||||||||||
Sbjct: 213 tggaccgacgactctaccacgacc 190
>gb|BG322950.1|BG322950 EM1_13_B01.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 518
Score = 174 bits (88), Expect = 7e-042
Identities = 103/108 (95%)
Strand = Plus / Minus
Query: 487 gggtgttcagttgaactgggccccgctgaaggtctggccgaagccccagccgcgcggggc 546
||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||
Sbjct: 111 gggtgttcagttgaactgggcgccgctgaaggtctggccgaaggcccagccgcggggggc 52
Query: 547 agcgttgctggagaccacggagcggccgtcgctggtggtgacgcggaa 594
|||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 51 ggcgttgttggagaccacggagcggccgtcgctggtggtgacgcggaa 4
Score = 135 bits (68), Expect = 6e-030
Identities = 127/144 (88%), Gaps = 7/144 (4%)
Strand = Plus / Minus
Query: 284 ccagcacgacaaaacccgcgctaatactaggcctaaa-ctactggtaattccccagatcc 342
||||||||| |||||| |||||||||||||||||||| ||||||||||||||| || ||
Sbjct: 323 ccagcacgataaaacctgcgctaatactaggcctaaaactactggtaattcccaggagcc 264
Query: 343 aaagcgagatgcaccattcataaaaccatggcgcc--tctcggcaagctccgagtgaggg 400
|| ||||||||||||| |||||||||||||||||| |||||||||||||| | || |||
Sbjct: 263 aatgcgagatgcaccactcataaaaccatggcgcctctctcggcaagctccaattggggg 204
Query: 401 tg----gacgactctaccacgacc 420
|| ||||||||||||||||||
Sbjct: 203 tggaccgacgactctaccacgacc 180
Score = 129 bits (65), Expect = 4e-028
Identities = 112/124 (90%), Gaps = 4/124 (3%)
Strand = Plus / Minus
Query: 120 caaaacatctcatc-cgaaagaggccatcaccatgagaccccacaaatgcttaattggcg 178
||||||||||| || | |||||||||||||||||||| ||| | || ||||||||||||
Sbjct: 484 caaaacatctcttctcaaaagaggccatcaccatgaggcccaa--aacgcttaattggcg 427
Query: 179 ggtgataaaaggcggcctacctccgttaatctgcaagccagcc-ttaccaccacttccaa 237
||||||| |||||||||| ||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 426 ggtgatacaaggcggcctgcctccgttaatctccaagccagcctttaccaccacttccaa 367
Query: 238 ttcc 241
||||
Sbjct: 366 ttcc 363
>gb|CW325049.1|CW325049 104_819_11477484_148_35911_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11477484, DNA
sequence
Length = 672
Score = 135 bits (68), Expect = 6e-030
Identities = 127/144 (88%), Gaps = 7/144 (4%)
Strand = Plus / Plus
Query: 284 ccagcacgacaaaacccgcgctaatactaggcctaaa-ctactggtaattccccagatcc 342
||||||||| |||||| |||||||||||||||||||| ||||||||||||||| || ||
Sbjct: 459 ccagcacgataaaacctgcgctaatactaggcctaaaactactggtaattcccaggagcc 518
Query: 343 aaagcgagatgcaccattcataaaaccatggcgc--ctctcggcaagctccgagtgaggg 400
|| ||||||||||||| ||||||||||||||||| ||||||||||||||| | || |||
Sbjct: 519 aatgcgagatgcaccactcataaaaccatggcgcctctctcggcaagctccaattggggg 578
Query: 401 tg----gacgactctaccacgacc 420
|| ||||||||||||||||||
Sbjct: 579 tggaccgacgactctaccacgacc 602
Score = 129 bits (65), Expect = 4e-028
Identities = 112/124 (90%), Gaps = 4/124 (3%)
Strand = Plus / Plus
Query: 120 caaaacatctcatc-cgaaagaggccatcaccatgagaccccacaaatgcttaattggcg 178
||||||||||| || | |||||||||||||||||||| ||| | || ||||||||||||
Sbjct: 298 caaaacatctcttctcaaaagaggccatcaccatgaggcccaa--aacgcttaattggcg 355
Query: 179 ggtgataaaaggcggcctacctccgttaatctgcaagccagcc-ttaccaccacttccaa 237
||||||| |||||||||| ||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 356 ggtgatacaaggcggcctgcctccgttaatctccaagccagcctttaccaccacttccaa 415
Query: 238 ttcc 241
||||
Sbjct: 416 ttcc 419
>gb|CW038341.1|CW038341 104_270_10504868_114_30385 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10504868, DNA
sequence
Length = 715
Score = 97.6 bits (49), Expect = 1e-018
Identities = 76/85 (89%)
Strand = Plus / Plus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| |||||||||||||| |||||| ||||||||||| ||| ||||| ||||||| |
Sbjct: 241 acggtgcggccgtcgctggcggtgacctggaaggagaggctctggccgtcgaggagcgag 300
Query: 623 ttgctctgccagttctggccccagt 647
|||||||||||||||||||||||||
Sbjct: 301 ttgctctgccagttctggccccagt 325
>gb|CW075930.1|CW075930 104_363_10809810_114_31800_258 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10809810, DNA
sequence
Length = 719
Score = 97.6 bits (49), Expect = 1e-018
Identities = 76/85 (89%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| |||||||||||||| |||||| ||||||||||| ||| ||||| ||||||| |
Sbjct: 640 acggtgcggccgtcgctggcggtgacctggaaggagaggctctggccgtcgaggagcgag 581
Query: 623 ttgctctgccagttctggccccagt 647
|||||||||||||||||||||||||
Sbjct: 580 ttgctctgccagttctggccccagt 556
>gb|CW075931.1|CW075931 104_363_10809810_116_31801_258 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10809810, DNA
sequence
Length = 503
Score = 97.6 bits (49), Expect = 1e-018
Identities = 76/85 (89%)
Strand = Plus / Plus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| |||||||||||||| |||||| ||||||||||| ||| ||||| ||||||| |
Sbjct: 218 acggtgcggccgtcgctggcggtgacctggaaggagaggctctggccgtcgaggagcgag 277
Query: 623 ttgctctgccagttctggccccagt 647
|||||||||||||||||||||||||
Sbjct: 278 ttgctctgccagttctggccccagt 302
>gb|BG051930.1|BG051930 RHIZ2_6_F11.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 588
Score = 97.6 bits (49), Expect = 1e-018
Identities = 76/85 (89%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| |||||||||||||| |||||| ||||||||||| ||| ||||| ||||||| |
Sbjct: 120 acggtgcggccgtcgctggcggtgacctggaaggagaggctctggccgtcgaggagcgag 61
Query: 623 ttgctctgccagttctggccccagt 647
|||||||||||||||||||||||||
Sbjct: 60 ttgctctgccagttctggccccagt 36
>gb|BG355666.1|BG355666 EM1_16_F05.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 648
Score = 97.6 bits (49), Expect = 1e-018
Identities = 76/85 (89%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| |||||||||||||| |||||| ||||||||||| ||| ||||| ||||||| |
Sbjct: 147 acggtgcggccgtcgctggcggtgacctggaaggagaggctctggccgtcgaggagcgag 88
Query: 623 ttgctctgccagttctggccccagt 647
|||||||||||||||||||||||||
Sbjct: 87 ttgctctgccagttctggccccagt 63
>gb|CF430219.1|CF430219 PH1_27_A08.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_27_A08_A002 3', mRNA sequence
Length = 685
Score = 97.6 bits (49), Expect = 1e-018
Identities = 76/85 (89%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| |||||||||||||| |||||| ||||||||||| ||| ||||| ||||||| |
Sbjct: 125 acggtgcggccgtcgctggcggtgacctggaaggagaggctctggccgtcgaggagcgag 66
Query: 623 ttgctctgccagttctggccccagt 647
|||||||||||||||||||||||||
Sbjct: 65 ttgctctgccagttctggccccagt 41
>gb|CF430353.1|CF430353 PH1_27_A08.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_27_A08_A002 5', mRNA sequence
Length = 787
Score = 97.6 bits (49), Expect = 1e-018
Identities = 76/85 (89%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| |||||||||||||| |||||| ||||||||||| ||| ||||| ||||||| |
Sbjct: 774 acggtgcggccgtcgctggcggtgacctggaaggagaggctctggccgtcgaggagcgag 715
Query: 623 ttgctctgccagttctggccccagt 647
|||||||||||||||||||||||||
Sbjct: 714 ttgctctgccagttctggccccagt 690
>gb|CN136158.1|CN136158 OX1_41_D05.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_41_D05_A002 3', mRNA sequence
Length = 725
Score = 97.6 bits (49), Expect = 1e-018
Identities = 76/85 (89%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| |||||||||||||| |||||| ||||||||||| ||| ||||| ||||||| |
Sbjct: 435 acggtgcggccgtcgctggcggtgacctggaaggagaggctctggccgtcgaggagcgag 376
Query: 623 ttgctctgccagttctggccccagt 647
|||||||||||||||||||||||||
Sbjct: 375 ttgctctgccagttctggccccagt 351
>gb|CN136232.1|CN136232 OX1_41_D05.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_41_D05_A002 5', mRNA sequence
Length = 840
Score = 97.6 bits (49), Expect = 1e-018
Identities = 76/85 (89%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| |||||||||||||| |||||| ||||||||||| ||| ||||| ||||||| |
Sbjct: 770 acggtgcggccgtcgctggcggtgacctggaaggagaggctctggccgtcgaggagcgag 711
Query: 623 ttgctctgccagttctggccccagt 647
|||||||||||||||||||||||||
Sbjct: 710 ttgctctgccagttctggccccagt 686
>gb|CX606996.1|CX606996 ANR1_6_C12.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_6_C12_A002 3', mRNA sequence
Length = 699
Score = 97.6 bits (49), Expect = 1e-018
Identities = 76/85 (89%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| |||||||||||||| |||||| ||||||||||| ||| ||||| ||||||| |
Sbjct: 173 acggtgcggccgtcgctggcggtgacctggaaggagaggctctggccgtcgaggagcgag 114
Query: 623 ttgctctgccagttctggccccagt 647
|||||||||||||||||||||||||
Sbjct: 113 ttgctctgccagttctggccccagt 89
>gb|CX623191.1|CX623191 GABR1_68_F03.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_68_F03_A002 3', mRNA sequence
Length = 680
Score = 97.6 bits (49), Expect = 1e-018
Identities = 76/85 (89%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| |||||||||||||| |||||| ||||||||||| ||| ||||| ||||||| |
Sbjct: 161 acggtgcggccgtcgctggcggtgacctggaaggagaggctctggccgtcaaggagcgag 102
Query: 623 ttgctctgccagttctggccccagt 647
|||||||||||||||||||||||||
Sbjct: 101 ttgctctgccagttctggccccagt 77
>gb|CL172101.1|CL172101 104_374_10889911_148_31774_199 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10889911, DNA
sequence
Length = 766
Score = 93.7 bits (47), Expect = 2e-017
Identities = 93/107 (86%), Gaps = 1/107 (0%)
Strand = Plus / Plus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| |||||||||||||| |||||| |||| || || ||||||||||||||| || |
Sbjct: 160 acggtgcggccgtcgctggcggtgacctggaacgacagcgcctgcccgtccaggtccgcg 219
Query: 623 ttgctctgccagttctggccccag-tgcgcgacagggcctgccaccc 668
|||||||||||||||||||||||| | ||||||| || |||||||||
Sbjct: 220 ttgctctgccagttctggccccagttccgcgacatgggctgccaccc 266
>gb|CW059494.1|CW059494 104_302_10519350_114_30165 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10519350, DNA
sequence
Length = 558
Score = 93.7 bits (47), Expect = 2e-017
Identities = 93/107 (86%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| |||||||||||||| |||||| |||| || || ||||||||||||||| || |
Sbjct: 229 acggtgcggccgtcgctggcggtgacctggaacgacagcgcctgcccgtccaggtccgcg 170
Query: 623 ttgctctgccagttctggccccag-tgcgcgacagggcctgccaccc 668
|||||||||||||||||||||||| | ||||||| || |||||||||
Sbjct: 169 ttgctctgccagttctggccccagttccgcgacatgggctgccaccc 123
>gb|CW143277.1|CW143277 104_535_11137329_148_34958_047 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11137329, DNA
sequence
Length = 593
Score = 93.7 bits (47), Expect = 2e-017
Identities = 93/107 (86%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| |||||||||||||| |||||| |||| || || ||||||||||||||| || |
Sbjct: 492 acggtgcggccgtcgctggcggtgacctggaacgacagcgcctgcccgtccaggtccgcg 433
Query: 623 ttgctctgccagttctggccccag-tgcgcgacagggcctgccaccc 668
|||||||||||||||||||||||| | ||||||| || |||||||||
Sbjct: 432 ttgctctgccagttctggccccagttccgcgacatgggctgccaccc 386
>gb|CW177877.1|CW177877 104_591_11159265_116_36611_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11159265, DNA
sequence
Length = 627
Score = 93.7 bits (47), Expect = 2e-017
Identities = 93/107 (86%), Gaps = 1/107 (0%)
Strand = Plus / Plus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| |||||||||||||| |||||| |||| || || ||||||||||||||| || |
Sbjct: 464 acggtgcggccgtcgctggcggtgacctggaacgacagcgcctgcccgtccaggtccgcg 523
Query: 623 ttgctctgccagttctggccccag-tgcgcgacagggcctgccaccc 668
|||||||||||||||||||||||| | ||||||| || |||||||||
Sbjct: 524 ttgctctgccagttctggccccagttccgcgacatgggctgccaccc 570
>gb|CW318661.1|CW318661 104_811_11474070_148_35883_031 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11474070, DNA
sequence
Length = 692
Score = 93.7 bits (47), Expect = 2e-017
Identities = 93/107 (86%), Gaps = 1/107 (0%)
Strand = Plus / Plus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| |||||||||||||| |||||| |||| || || ||||||||||||||| || |
Sbjct: 262 acggtgcggccgtcgctggcggtgacctggaacgacagcgcctgcccgtccaggtccgcg 321
Query: 623 ttgctctgccagttctggccccag-tgcgcgacagggcctgccaccc 668
|||||||||||||||||||||||| | ||||||| || |||||||||
Sbjct: 322 ttgctctgccagttctggccccagttccgcgacatgggctgccaccc 368
>gb|BE917670.1|BE917670 OV1_6_F07.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 673
Score = 93.7 bits (47), Expect = 2e-017
Identities = 93/107 (86%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| |||||||||||||| |||||| |||| || || ||||||||||||||| || |
Sbjct: 228 acggtgcggccgtcgctggcggtgacctggaacgacagcgcctgcccgtccaggtccgcg 169
Query: 623 ttgctctgccagttctggccccag-tgcgcgacagggcctgccaccc 668
|||||||||||||||||||||||| | ||||||| || |||||||||
Sbjct: 168 ttgctctgccagttctggccccagttccgcgacatgggctgccaccc 122
>gb|BG052868.1|BG052868 RHIZ2_15_B11.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 576
Score = 93.7 bits (47), Expect = 2e-017
Identities = 93/107 (86%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| |||||||||||||| |||||| |||| || || ||||||||||||||| || |
Sbjct: 128 acggtgcggccgtcgctggcggtgacctggaacgacagcgcctgcccgtccaggtccgcg 69
Query: 623 ttgctctgccagttctggccccag-tgcgcgacagggcctgccaccc 668
|||||||||||||||||||||||| | ||||||| || |||||||||
Sbjct: 68 ttgctctgccagttctggccccagttccgcgacatgggctgccaccc 22
>gb|BG464039.1|BG464039 EM1_52_H10.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 664
Score = 93.7 bits (47), Expect = 2e-017
Identities = 93/107 (86%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| |||||||||||||| |||||| |||| || || ||||||||||||||| || |
Sbjct: 206 acggtgcggccgtcgctggcggtgacctggaacgacagcgcctgcccgtccaggtccgcg 147
Query: 623 ttgctctgccagttctggccccag-tgcgcgacagggcctgccaccc 668
|||||||||||||||||||||||| | ||||||| || |||||||||
Sbjct: 146 ttgctctgccagttctggccccagttccgcgacatgggctgccaccc 100
>gb|BG557559.1|BG557559 EM1_53_A06.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 577
Score = 93.7 bits (47), Expect = 2e-017
Identities = 93/107 (86%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| |||||||||||||| |||||| |||| || || ||||||||||||||| || |
Sbjct: 117 acggtgcggccgtcgctggcggtgacctggaacgacagcgcctgcccgtccaggtccgcg 58
Query: 623 ttgctctgccagttctggccccag-tgcgcgacagggcctgccaccc 668
|||||||||||||||||||||||| | ||||||| || |||||||||
Sbjct: 57 ttgctctgccagttctggccccagttccgcgacatgggctgccaccc 11
>gb|CD432755.1|CD432755 ETH1_33_A06.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_33_A06_A002 3', mRNA sequence
Length = 583
Score = 93.7 bits (47), Expect = 2e-017
Identities = 74/83 (89%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| |||||||||||||| |||||| ||||||||||| ||| ||||| ||||||| |
Sbjct: 83 acggtgcggccgtcgctggcggtgacctggaaggagaggctctggccgtcgaggagcgag 24
Query: 623 ttgctctgccagttctggcccca 645
|||||||||||||||||||||||
Sbjct: 23 ttgctctgccagttctggcccca 1
>gb|CW392761.1|CW392761 fsbb001f079i10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f079i10, DNA
sequence
Length = 601
Score = 91.7 bits (46), Expect = 8e-017
Identities = 89/101 (88%), Gaps = 3/101 (2%)
Strand = Plus / Plus
Query: 120 caaaacatctcatc-cgaaagaggccatcaccatgagaccccacaaatgcttaattggcg 178
||||||||||| || | |||||||||||||||||||| ||| | || ||||||||||||
Sbjct: 503 caaaacatctcttctcaaaagaggccatcaccatgaggcccaa--aacgcttaattggcg 560
Query: 179 ggtgataaaaggcggcctacctccgttaatctgcaagccag 219
||||||| |||| ||||| ||||||||||||| ||||||||
Sbjct: 561 ggtgatacaagggggcctgcctccgttaatctccaagccag 601
>gb|BG053558.1|BG053558 RHIZ2_10_G02.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 563
Score = 89.7 bits (45), Expect = 3e-016
Identities = 75/85 (88%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| |||||||||||||| |||||| |||| || || ||||||||||||||| || |
Sbjct: 89 acggtgcggccgtcgctggcggtgacctggaacgacagcgcctgcccgtccaggtccgcg 30
Query: 623 ttgctctgccagttctggccccagt 647
|||||||||||||||||||||||||
Sbjct: 29 ttgctctgccagttctggccccagt 5
>gb|CX610991.1|CX610991 ANR1_22_B08.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_22_B08_A002 3', mRNA sequence
Length = 731
Score = 89.7 bits (45), Expect = 3e-016
Identities = 75/85 (88%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| |||||||||||||| |||||| | ||||||||| ||| ||||| ||||||| |
Sbjct: 217 acggtgcggccgtcgctggcggtgacctgaaaggagaggctctggccgtcgaggagcgag 158
Query: 623 ttgctctgccagttctggccccagt 647
|||||||||||||||||||||||||
Sbjct: 157 ttgctctgccagttctggccccagt 133
>gb|CW386714.1|CW386714 fsbb001f070m01f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f070m01, DNA
sequence
Length = 339
Score = 85.7 bits (43), Expect = 5e-015
Identities = 92/107 (85%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| |||||||||||||| |||||| |||| || || ||||||| ||||||| || |
Sbjct: 251 acggtgcggccgtcgctggcggtgacctggaacgacagcgcctgccggtccaggtccgcg 192
Query: 623 ttgctctgccagttctggccccag-tgcgcgacagggcctgccaccc 668
|||||||||||||||||||||||| | ||||||| || |||||||||
Sbjct: 191 ttgctctgccagttctggccccagttccgcgacatgggctgccaccc 145
>gb|BI075536.1|BI075536 IP1_21_G05.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 564
Score = 85.7 bits (43), Expect = 5e-015
Identities = 73/83 (87%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| |||||||||||||| |||||| |||| || || ||||||||||||||| || |
Sbjct: 83 acggtgcggccgtcgctggcggtgacctggaacgacagcgcctgcccgtccaggtccgcg 24
Query: 623 ttgctctgccagttctggcccca 645
|||||||||||||||||||||||
Sbjct: 23 ttgctctgccagttctggcccca 1
>gb|CN151243.1|CN151243 WOUND1_74_G01.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_74_G01_A002 3', mRNA sequence
Length = 681
Score = 85.7 bits (43), Expect = 5e-015
Identities = 73/83 (87%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| |||||||||||||| |||||| |||| || || ||||||||||||||| || |
Sbjct: 215 acggtgcggccgtcgctggaggtgacctggaacgacagcgcctgcccgtccaggtccgcg 156
Query: 623 ttgctctgccagttctggcccca 645
|||||||||||||||||||||||
Sbjct: 155 ttgctctgccagttctggcccca 133
>gb|CW479320.1|CW479320 fsbb001f237l21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f237l21, DNA
sequence
Length = 522
Score = 83.8 bits (42), Expect = 2e-014
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Minus
Query: 563 acggagcggccgtcgctggtggtgacgcggaaggagagggcctgcccgtccaggagcgtg 622
|||| ||| |||||||||| |||||| ||||||||||| ||||||||| ||||||| |
Sbjct: 511 acggtgcgcccgtcgctggcggtgacctggaaggagaggctctgcccgtcgaggagcgag 452
Query: 623 ttgctctg-ccagttctggccccagt 647
|||||||| |||||||||||||||||
Sbjct: 451 ttgctctgcccagttctggccccagt 426
>gb|CL172100.1|CL172100 104_374_10889911_116_31775_199 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10889911, DNA
sequence
Length = 762
Score = 71.9 bits (36), Expect = 7e-011
Identities = 61/68 (89%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 602 gcctgcccgtccaggagcgtgttgctctgccagttctggccccag-tgcgcgacagggcc 660
||||||||||||||| || ||||||||||||||||||||||||| | ||||||| || |
Sbjct: 757 gcctgcccgtccaggtccgcgttgctctgccagttctggccccagttccgcgacatgggc 698
Query: 661 tgccaccc 668
||||||||
Sbjct: 697 tgccaccc 690
>gb|CX611078.1|CX611078 ANR1_22_B08.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_22_B08_A002 5', mRNA sequence
Length = 605
Score = 63.9 bits (32), Expect = 2e-008
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 608 ccgtccaggagcgtgttgctctgccagttctggccccagt 647
||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 597 ccgtcgaggagcgagttgctctgccagttctggccccagt 558
>gb|CW032533.1|CW032533 104_261_10501433_114_30363 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10501433, DNA
sequence
Length = 598
Score = 58.0 bits (29), Expect = 1e-006
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 568 gcggccgtcgctggtggtgacgcggaaggagag 600
||||| |||||||||||||||||||||||||||
Sbjct: 504 gcggcggtcgctggtggtgacgcggaaggagag 536
>gb|CW231485.1|CW231485 104_680_11211147_116_37343_004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11211147, DNA
sequence
Length = 736
Score = 58.0 bits (29), Expect = 1e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 583 ggtgacgcggaaggagagggcctgcccgtccaggagcgtgttgctctgccagttctggcc 642
|||||||||||||||||| ||||| ||| | |||| | |||| |||||||||||||||
Sbjct: 319 ggtgacgcggaaggagagcgcctggccgacgaggatggcgttggactgccagttctggcc 260
Query: 643 ccagt 647
|||||
Sbjct: 259 ccagt 255
>gb|BG240827.1|BG240827 OV1_38_G09.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 618
Score = 58.0 bits (29), Expect = 1e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 583 ggtgacgcggaaggagagggcctgcccgtccaggagcgtgttgctctgccagttctggcc 642
|||||||||||||||||| ||||| ||| | |||| | |||| |||||||||||||||
Sbjct: 237 ggtgacgcggaaggagagcgcctggccgacgaggatggcgttggactgccagttctggcc 178
Query: 643 ccagt 647
|||||
Sbjct: 177 ccagt 173
>gb|BI140900.1|BI140900 IP1_40_E08.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 622
Score = 58.0 bits (29), Expect = 1e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 583 ggtgacgcggaaggagagggcctgcccgtccaggagcgtgttgctctgccagttctggcc 642
|||||||||||||||||| ||||| ||| | |||| | |||| |||||||||||||||
Sbjct: 595 ggtgacgcggaaggagagcgcctggccgacgaggatggcgttggactgccagttctggcc 536
Query: 643 ccagt 647
|||||
Sbjct: 535 ccagt 531
>gb|BG356043.2|BG356043 EM1_19_F04.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 596
Score = 58.0 bits (29), Expect = 1e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 583 ggtgacgcggaaggagagggcctgcccgtccaggagcgtgttgctctgccagttctggcc 642
|||||||||||||||||| ||||| ||| | |||| | |||| |||||||||||||||
Sbjct: 73 ggtgacgcggaaggagagcgcctggccgacgaggatggcgttggactgccagttctggcc 14
Query: 643 ccagt 647
|||||
Sbjct: 13 ccagt 9
>gb|CF429993.1|CF429993 PH1_25_G07.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_25_G07_A002 5', mRNA sequence
Length = 823
Score = 58.0 bits (29), Expect = 1e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 583 ggtgacgcggaaggagagggcctgcccgtccaggagcgtgttgctctgccagttctggcc 642
|||||||||||||||||| ||||| ||| | |||| | |||| |||||||||||||||
Sbjct: 803 ggtgacgcggaaggagagcgcctggccgacgaggatggcgttggactgccagttctggcc 744
Query: 643 ccagt 647
|||||
Sbjct: 743 ccagt 739
>gb|CN142636.1|CN142636 WOUND1_11_F01.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_11_F01_A002 3', mRNA sequence
Length = 702
Score = 58.0 bits (29), Expect = 1e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 583 ggtgacgcggaaggagagggcctgcccgtccaggagcgtgttgctctgccagttctggcc 642
|||||||||||||||||| ||||| ||| | |||| | |||| |||||||||||||||
Sbjct: 133 ggtgacgcggaaggagagcgcctggccgacgaggatggcgttggactgccagttctggcc 74
Query: 643 ccagt 647
|||||
Sbjct: 73 ccagt 69
>gb|CX607081.1|CX607081 ANR1_6_C12.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_6_C12_A002 5', mRNA sequence
Length = 705
Score = 58.0 bits (29), Expect = 1e-006
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 615 ggagcgtgttgctctgccagttctggccccagt 647
|||||| ||||||||||||||||||||||||||
Sbjct: 705 ggagcgagttgctctgccagttctggccccagt 673
>gb|DN551840.1|DN551840 pSPR-RT-A-H2_G06_S131 pSPR Sorghum propinquum cDNA, mRNA sequence
Length = 861
Score = 58.0 bits (29), Expect = 1e-006
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 568 gcggccgtcgctggtggtgacgcggaaggagag 600
||||| |||||||||||||||||||||||||||
Sbjct: 841 gcggcggtcgctggtggtgacgcggaaggagag 809
>gb|CL182296.1|CL182296 104_393_10897331_148_31921_323 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10897331, DNA
sequence
Length = 709
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 628 ctgccagttctggccccagt 647
||||||||||||||||||||
Sbjct: 693 ctgccagttctggccccagt 674
>gb|CW132505.1|CW132505 104_515_11116248_116_34797_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11116248, DNA
sequence
Length = 643
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 628 ctgccagttctggccccagt 647
||||||||||||||||||||
Sbjct: 490 ctgccagttctggccccagt 509
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 145,628
Number of Sequences: 832831
Number of extensions: 145628
Number of successful extensions: 41600
Number of sequences better than 0.5: 53
Number of HSP's better than 0.5 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41441
Number of HSP's gapped (non-prelim): 112
length of query: 668
length of database: 491,359,669
effective HSP length: 19
effective length of query: 649
effective length of database: 475,535,880
effective search space: 308622786120
effective search space used: 308622786120
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)