BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2594130.2.1
(2756 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY304540.1| Sorghum bicolor starch branching enzyme IIb ... 1219 0.0
gb|CD423046.1|CD423046 SA1_29_C06.g1_A002 Salicylic acid-tr... 1164 0.0
gb|BF585594.1|BF585594 FM1_23_C08.b1_A003 Floral-Induced Me... 757 0.0
gb|CF770718.1|CF770718 DSBF1_9_H03.b1_A010 Drought-stressed... 597 e-168
gb|BF585503.1|BF585503 FM1_23_C08.g1_A003 Floral-Induced Me... 500 e-139
gb|CF758823.1|CF758823 DSAF1_37_A07.g1_A011 Drought-stresse... 482 e-134
gb|CF770707.1|CF770707 DSBF1_9_G04.b1_A010 Drought-stressed... 323 5e-086
gb|CW437259.1|CW437259 fsbb001f154e17f0 Sorghum methylation... 270 6e-070
gb|BG240463.1|BG240463 OV1_30_D01.b1_A002 Ovary 1 (OV1) Sor... 262 2e-067
gb|CW477931.1|CW477931 fsbb001f235i08f0 Sorghum methylation... 234 4e-059
gb|CW477932.1|CW477932 fsbb001f235i08k0 Sorghum methylation... 220 5e-055
gb|CL160894.1|CL160894 104_351_10805315_116_31825_371 Sorgh... 218 2e-054
gb|AW677699.1|AW677699 WS1_10_H10.g1_A002 Water-stressed 1 ... 161 4e-037
gb|CL160893.1|CL160893 104_351_10805315_114_31824_371 Sorgh... 159 2e-036
gb|CW501257.1|CW501257 fsbb001f296p20k0 Sorghum methylation... 125 2e-026
gb|BG054395.1|BG054395 OV2_3_H07.b1_A002 Ovary 2 (OV2) Sorg... 111 4e-022
gb|BZ335716.1|BZ335716 hz26d08.b1 WGS-SbicolorF (JM107 adap... 92 3e-016
gb|CW288524.1|CW288524 104_767_11411997_148_35539_095 Sorgh... 86 2e-014
gb|CW342804.1|CW342804 104_844_11487075_148_36174_002 Sorgh... 86 2e-014
gb|CW290291.1|CW290291 104_769_11412931_116_35553_072 Sorgh... 74 8e-011
gb|BZ335717.1|BZ335717 hz26d08.g1 WGS-SbicolorF (JM107 adap... 70 1e-009
gb|CL195061.1|CL195061 104_420_10942098_114_32301_077 Sorgh... 70 1e-009
gb|BG054232.1|BG054232 OV2_3_H07.g1_A002 Ovary 2 (OV2) Sorg... 68 5e-009
gb|BG273480.1|BG273480 OV2_26_C01.b1_A002 Ovary 2 (OV2) Sor... 68 5e-009
gb|CW030254.1|CW030254 104_258_10500145_116_30404 Sorghum m... 62 3e-007
gb|CW189460.1|CW189460 104_610_11173976_148_37099_020 Sorgh... 62 3e-007
gb|CW179496.1|CW179496 104_593_11160131_148_36629_038 Sorgh... 60 1e-006
gb|CW189459.1|CW189459 104_610_11173976_116_37100_020 Sorgh... 60 1e-006
gb|CW020954.1|CW020954 104_109_10409259_114_30491 Sorghum m... 58 5e-006
gb|CD228917.1|CD228917 CCC1_10_C07.g1_A007 Callus culture/c... 52 3e-004
gb|AF169833.2| Sorghum bicolor seed starch branching enzyme... 52 3e-004
gb|AY304539.1| Sorghum bicolor starch branching enzyme IIb ... 52 3e-004
gb|CW276739.1|CW276739 104_750_11405653_148_35400_055 Sorgh... 44 0.069
>gb|AY304540.1| Sorghum bicolor starch branching enzyme IIb (sbeIIb) mRNA, complete
cds; nuclear gene for plastid product
Length = 2664
Score = 1219 bits (615), Expect = 0.0
Identities = 1445/1724 (83%)
Strand = Plus / Plus
Query: 531 ttggatttactcgcagcgctgaaggtatcacttacagagaatgggctcctggagcatact 590
||||||||| ||||||||| ||||||||||| || |||||||||||||||||||| |
Sbjct: 562 ttggatttaatcgcagcgcggaaggtatcacctatcgagaatgggctcctggagcacttt 621
Query: 591 ctgcagcattagtaggtgacttcaacaactggaacccaaatgctgatgctatggccagaa 650
|||||||||| || || ||||||||||||||| | |||||||| || |||| || ||
Sbjct: 622 ctgcagcattggtgggcgacttcaacaactgggatccaaatgcagaccttatgagcaaaa 681
Query: 651 atgagtacggcgtttgggagattttcctgcctaacaatgctgatggttcccctgctattc 710
|||||| || |||||||||||||| |||||||||||||| |||||| | | ||||||
Sbjct: 682 atgagtttggtgtttgggagatttttctgcctaacaatgcagatggtacatcacctattc 741
Query: 711 ctcatggctcacgtgtaaagatacggatggacacaccatctggtgttaaggattccattc 770
||||||| | ||||||||| | | ||||| || ||||| || | |||||||| ||||
Sbjct: 742 ctcatggaactcgtgtaaaggtgagaatggatactccatcagggataaaggattcaattc 801
Query: 771 ctgcctggatcaagttttctgtgcaggctccaggtgaaataccatacaacggtatatatt 830
||||||||||||||| || || ||||||||||| |||||||||||| | || | ||||
Sbjct: 802 ctgcctggatcaagtactcagtacaggctccaggagaaataccatacgatgggctttatt 861
Query: 831 atgacccacctgaagaggagaaatatgtattcaaacaccctcaacctaagcggcccaagt 890
|||| || |||||||||| || ||||| ||||| || ||| ||||||| || || || |
Sbjct: 862 atgatcctcctgaagaggtaaagtatgtgttcaagcatcctaaacctaaacgaccaaaat 921
Query: 891 cactgcggatatatgaatcacatgttggaatgagtagcccggaaccaaagataaatacat 950
|| || ||||||||||| |||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 922 cattgaggatatatgaaacacatgttggaatgagtagcccggaaccgaagataaacacat 981
Query: 951 atgctaacttcagagatgaggtgcttccaagaattaaaaagcttggatacaatgcagtac 1010
|||| ||||| || |||||||| || |||||||| || || ||||||||||||||||| |
Sbjct: 982 atgcaaactttagggatgaggtcctcccaagaataaagaaacttggatacaatgcagtgc 1041
Query: 1011 agataatggcaatccaggaacactcttattatgcaagctttgggtaccatgttacgaann 1070
| |||||||||||||| || ||||| ||||||| ||||||||| |||||||| || ||
Sbjct: 1042 aaataatggcaatccaagagcactcatattatggaagctttggataccatgtaactaatt 1101
Query: 1071 nnnnngccccaagtagccgttttgggactccagaggacctaaaatctcttattgataaag 1130
|| |||||||| |||||||| |||||||| || | || ||| | ||||||| ||
Sbjct: 1102 tttttgcaccaagtagtcgttttggtactccagaagatttgaagtctatgattgatagag 1161
Query: 1131 cgcatgagcttggcttgctagtgcttatggatattgttcatagtcattcatcaaataata 1190
| ||||||||||| |||||||| || |||||| | || ||||||||| | |||| |||||
Sbjct: 1162 cacatgagcttggtttgctagttctcatggatgtggtccatagtcatgcgtcaagtaata 1221
Query: 1191 ccttggatggtttgaatggtttcgatggcaccgatacacattacttccatggtggtccac 1250
| ||||||| ||||||||||| ||||| || ||||||||||| || ||| |||||||||
Sbjct: 1222 ctctggatgggttgaatggttttgatggtacggatacacattattttcatagtggtccac 1281
Query: 1251 gaggccatcattggatgtgggattctcgcctattcaattatgggagttgggaagttttga 1310
|||||||||| |||||||||||||||||| ||||||| ||||||| ||||||||||| |
Sbjct: 1282 gaggccatcactggatgtgggattctcgcttattcaactatgggaactgggaagttttaa 1341
Query: 1311 gatttctattgtcaaatgcgagatggtggcttgaagaatataaatttgatgggtttcgat 1370
||||||| | || ||||| |||||||||||||| |||||||| |||||||| || || |
Sbjct: 1342 gatttcttctctccaatgctagatggtggcttgaggaatataagtttgatggtttccgct 1401
Query: 1371 ttgatggggtgacctccatgatgtatactcaccatggattacaagtgacattcactggga 1430
||||||| ||||||||||||||||| |||||||| ||||||||||| ||||| || ||||
Sbjct: 1402 ttgatggtgtgacctccatgatgtacactcaccacggattacaagtaacatttacgggga 1461
Query: 1431 actatggcgagtattttggatttgccactgatgttgatgcagtagtttacctaatgctgg 1490
|| ||||||||||| |||||||| ||||| |||||||| |||||| | ||||| |
Sbjct: 1462 gcttcaatgagtattttggctttgccaccgatgtagatgcagtggtttacttgatgctcg 1521
Query: 1491 taaacgatcttattcgtgggctttatccagaagctgtatccattggcgaagatgtcagcg 1550
|||| ||||| |||| ||| |||||||| || |||||| ||||||| |||||||| || |
Sbjct: 1522 taaatgatctaattcatggactttatcctgaggctgtaaccattggtgaagatgttagtg 1581
Query: 1551 gaatgcctacattttgtatccctgtccaagatggtggtgttggttttgattatcgtcttc 1610
||||||| ||||| | ||||| ||||||||||| || |||||||| ||||| | |
Sbjct: 1582 gaatgccctcatttgcccttcctgttcaagatggtggggtaggttttgactatcggatgc 1641
Query: 1611 atatggctgtcccagacaaatggattgaacttctgaagcaaagtgacgaatattgggaaa 1670
| |||||||| | ||||||||||||||| |||| ||||||||||| ||| |||| | |
Sbjct: 1642 acatggctgtggctgacaaatggattgaatttctcaagcaaagtgatgaagcttggaaga 1701
Query: 1671 tgggtgacatcgtgcacaccttaacaaatagaaggtggcttgaaaagtgtgtcacttatt 1730
||||||| || |||||||| ||||||||||||||||| | || |||||||| ||||||
Sbjct: 1702 tgggtgatattgtgcacacactaacaaatagaaggtggttggagaagtgtgtaacttatg 1761
Query: 1731 gtgaaagtcatgatcaagctcttgttggtgacaagacaattgcattctggttgatggata 1790
|||||||||||||||||| | || ||||||||||| |||||||| ||||||||||| |
Sbjct: 1762 ctgaaagtcatgatcaagcattagtcggtgacaagactattgcattttggttgatggaca 1821
Query: 1791 aggatatgtatgatttcatggctctggacaggccttcaacgcctcgcatcgatcgtggga 1850
|||||||||||||||||||||| || || || ||| |||| ||| ||| ||||||||||
Sbjct: 1822 aggatatgtatgatttcatggcccttgatagacctgcaactcctaccattgatcgtggga 1881
Query: 1851 tagcattacataaaatgattaggcttgtcacaatgggtttaggaggtgaaggctatctaa 1910
||||||||||||| |||||||| ||| ||||||||||||||||||| || |||||||| |
Sbjct: 1882 tagcattacataagatgattagacttatcacaatgggtttaggaggagagggctatctta 1941
Query: 1911 atttcatgggaaatgagtttgggcatcctgaatggatagattttccaagaggtcctcaaa 1970
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 1942 atttcatgggaaatgagtttggacatcctgaatggatagattttccaagaggtccacaaa 2001
Query: 1971 gtcttccaaatggctccgtcattcctgggaataacaatagctttgataaatgccgccgta 2030
| ||||||| ||| ||||||| |||||||| || || | ||| |||||||| || |
Sbjct: 2002 gacttccaagtggtaagttcattccagggaataataacagttatgacaaatgccgtcgaa 2061
Query: 2031 gatttgaccttggagatgcagattatcttagatatcgtggtatgcaagagtttgaccagg 2090
|||||||||| || ||||| || |||||||| ||||||||||||||||||||||| ||||
Sbjct: 2062 gatttgacctgggtgatgcggactatcttaggtatcgtggtatgcaagagtttgatcagg 2121
Query: 2091 caatgcagcaccttgagggaaaatatgaattcatgacatctgatcactcatatgtatcac 2150
||||||| || |||||| |||||||| |||||||||||| |||||| ||| | || |
Sbjct: 2122 caatgcaacatcttgagcaaaaatatggattcatgacatccgatcaccagtatatttctc 2181
Query: 2151 ggaagcatgaggaggataaggtgatcatctttgagagaggagatttggtcttcgtgttca 2210
|||| ||||||||||||||| |||| | ||||| | ||||||||||| || |||||||
Sbjct: 2182 ggaaacatgaggaggataagatgattgtgtttgaaaagggagatttggtatttgtgttca 2241
Query: 2211 acttccactggagcaatagctattttgactatcgcgttggttgt 2254
|||||||||| | ||| |||||||||||||| || ||||||||
Sbjct: 2242 acttccactgtaacaacagctattttgactaccgtattggttgt 2285
>gb|CD423046.1|CD423046 SA1_29_C06.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_29_C06_A002 5', mRNA sequence
Length = 752
Score = 1164 bits (587), Expect = 0.0
Identities = 709/752 (94%)
Strand = Plus / Plus
Query: 399 atgagattgacccaatgttggaagggtttcggggtcaccttgactaccgatacagtgaat 458
||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 1 atgagattgacccaatgctggaagggtatcggggccaccttgactaccgatacagtgaat 60
Query: 459 ataagagattacgtgcggctattgatcaacatgaaggtggtttggatgcattttcacgcg 518
|||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 61 ataagagaatgcgtgcggctattgatcaacatgaaggtggcttggatgcattttcacgcg 120
Query: 519 gttacgaaaagcttggatttactcgcagcgctgaaggtatcacttacagagaatgggctc 578
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 121 gttacgaaaagcttggatttactcgcagcgctgaaggtatcacttatagagaatgggctc 180
Query: 579 ctggagcatactctgcagcattagtaggtgacttcaacaactggaacccaaatgctgatg 638
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 181 ctggagcatcctctgcagcattagtaggtgacttcaacaactggaatccaaatgctgatg 240
Query: 639 ctatggccagaaatgagtacggcgtttgggagattttcctgcctaacaatgctgatggtt 698
||||| ||||||||||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct: 241 ctatgaccagaaatgagtatggcgtttgggagattttcctgcctaataacgctgatggtt 300
Query: 699 cccctgctattcctcatggctcacgtgtaaagatacggatggacacaccatctggtgtta 758
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 301 cccctgctattcctcatggctcacgtgtaaagatacggatggatacaccatctggtgtga 360
Query: 759 aggattccattcctgcctggatcaagttttctgtgcaggctccaggtgaaataccataca 818
|||||||||||||||| ||| ||||||||||||| || ||||||||||||||||||||||
Sbjct: 361 aggattccattcctgcgtgggtcaagttttctgtacaagctccaggtgaaataccataca 420
Query: 819 acggtatatattatgacccacctgaagaggagaaatatgtattcaaacaccctcaaccta 878
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atggtatatattatgatccacctgaagaggagaaatatgtattcaaacaccctcaaccta 480
Query: 879 agcggcccaagtcactgcggatatatgaatcacatgttggaatgagtagcccggaaccaa 938
||||||| ||||||||||||||||| ||||||||| ||||||||||||| ||||||||||
Sbjct: 481 agcggccaaagtcactgcggatatacgaatcacatattggaatgagtagtccggaaccaa 540
Query: 939 agataaatacatatgctaacttcagagatgaggtgcttccaagaattaaaaagcttggat 998
|||||||||| |||||||||||| ||||||||||||| ||||||||||||| ||||||||
Sbjct: 541 agataaatacgtatgctaacttccgagatgaggtgctgccaagaattaaaaggcttggat 600
Query: 999 acaatgcagtacagataatggcaatccaggaacactcttattatgcaagctttgggtacc 1058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 acaatgcagtacagataatggcaatccaggaacactcttattatgcaagctttgggtacc 660
Query: 1059 atgttacgaannnnnnngccccaagtagccgttttgggactccagaggacctaaaatctc 1118
|||||||||| || ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 661 atgttacgaacttttttgcgccaagtagccgttttgggactcctgaggacctaaaatctc 720
Query: 1119 ttattgataaagcgcatgagcttggcttgcta 1150
| ||| |||||||||||||||||||||||
Sbjct: 721 tgatttgacaagcgcatgagcttggcttgcta 752
>gb|BF585594.1|BF585594 FM1_23_C08.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 462
Score = 757 bits (382), Expect = 0.0
Identities = 436/454 (96%)
Strand = Plus / Plus
Query: 1248 cacgaggccatcattggatgtgggattctcgcctattcaattatgggagttgggaagttt 1307
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 cacggggccatcattggatgtgggattctcgcctattcaattatgggagttgggaagttt 68
Query: 1308 tgagatttctattgtcaaatgcgagatggtggcttgaagaatataaatttgatgggtttc 1367
|||||| |||| |||||||||| ||||||||||||||||||||||| |||||||| ||||
Sbjct: 69 tgagatatctactgtcaaatgcaagatggtggcttgaagaatataagtttgatggatttc 128
Query: 1368 gatttgatggggtgacctccatgatgtatactcaccatggattacaagtgacattcactg 1427
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 129 gatttgatggggtgacctccatgatgtatactcaccatggattacaagtggcattcaccg 188
Query: 1428 ggaactatggcgagtattttggatttgccactgatgttgatgcagtagtttacctaatgc 1487
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 189 ggaactatggcgagtattttggatttgctactgatgttgatgcagtagtttacctaatgc 248
Query: 1488 tggtaaacgatcttattcgtgggctttatccagaagctgtatccattggcgaagatgtca 1547
||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 249 tggtaaacgatctcattcatgggctttatccagaagctgtatccattggtgaagatgtca 308
Query: 1548 gcggaatgcctacattttgtatccctgtccaagatggtggtgttggttttgattatcgtc 1607
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 309 gcggaatgcctacgttttgtattcctgtccaagatggtggtgttggttttgattatcgcc 368
Query: 1608 ttcatatggctgtcccagacaaatggattgaacttctgaagcaaagtgacgaatattggg 1667
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 369 ttcatatggctgtcccagacaaatggattgaacttctgaagcaaagtgatgaatattgga 428
Query: 1668 aaatgggtgacatcgtgcacaccttaacaaatag 1701
|||||||||| |||||||||||||||||||||||
Sbjct: 429 aaatgggtgatatcgtgcacaccttaacaaatag 462
>gb|CF770718.1|CF770718 DSBF1_9_H03.b1_A010 Drought-stressed before flowering Sorghum bicolor
cDNA clone DSBF1_9_H03_A010 5', mRNA sequence
Length = 531
Score = 597 bits (301), Expect = e-168
Identities = 448/495 (90%), Gaps = 29/495 (5%)
Strand = Plus / Plus
Query: 2176 catctttgagagaggagatttggtcttcgtgttcaacttccactggagcaatagctattt 2235
|||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 1 catcttcgagagaggagatttggtctttgtattcaacttccactggagcaatagctattt 60
Query: 2236 tgactatcgcgttggttgtttcaagcctgggaagtacaagatcgttttagattctgacga 2295
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 61 tgactatcgtgttggttgtttcaagcctgggaagtacaagatcgtgttagattctgacga 120
Query: 2296 tggccttttcggtggatttagtcggcttgatcatgacgctgagtacttcactgctgactg 2355
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 121 tggccttttcggtggatttagtcggcttgatcatgatgctgagtacttcactgctgactg 180
Query: 2356 gccgcatgacaacaggccgtgttctttctcggtctatgcacccagcagaacagccgtcgt 2415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gccgcatgacaacaggccgtgttctttctcggtctatgcacccagcagaacagccgtcgt 240
Query: 2416 atatgcacctgcaggtgcagaggacgaataggg--------cacagcagcggttgttggg 2467
||||||||||||||||| ||||||||||||||| |||| |||||||| | |||
Sbjct: 241 atatgcacctgcaggtgaagaggacgaatagggcacaaccgcacaacagcggttatcggg 300
Query: 2468 gaagaacttcagagggatgtact-----gctggtggactgacaccactgc---------- 2512
|||||||||||| ||||||||| |||||||| |||||||||||||
Sbjct: 301 gaagaacttcag--ggatgtactccactgctggtggcctgacaccactgcgagatgcgac 358
Query: 2513 cacgcgcgatgctgccagatgttgccc-tcgagaccacgtggcaggacgatcagct-att 2570
|||||||||||||||| ||||||| | |||||||| ||||||||||||||| ||| |||
Sbjct: 359 cacgcgcgatgctgccggatgttgtcaatcgagaccgcgtggcaggacgatcggcttatt 418
Query: 2571 caggtggataggttagcttaccgatgagctctctcgctttcgagtgactggtgaaggaaa 2630
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 419 caggtggataggttagcttatcgatgagctctc--gctttcgagtgactggtgaaggaaa 476
Query: 2631 tggacctcgcacacc 2645
|||||| ||||||||
Sbjct: 477 tggaccgcgcacacc 491
Score = 46.1 bits (23), Expect = 0.017
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2684 ttttgtacatatggcatcagtaggcat 2710
|||||||||||| ||||||||||||||
Sbjct: 498 ttttgtacatatcgcatcagtaggcat 524
>gb|BF585503.1|BF585503 FM1_23_C08.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 515
Score = 500 bits (252), Expect = e-139
Identities = 399/446 (89%), Gaps = 29/446 (6%)
Strand = Plus / Plus
Query: 2225 aatagctattttgactatcgcgttggttgtttcaagcctgggaagtacaagatcgtttta 2284
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 1 aatagctattttgactatcgtgttggttgtttcaagcctgggaagtacaagatcgtgtta 60
Query: 2285 gattctgacgatggccttttcggtggatttagtcggcttgatcatgacgctgagtacttc 2344
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 61 gattctgacgatggccttttcggtggatttaatcggcttgatcatgatgctgagtacttc 120
Query: 2345 actgctgactggccgcatgacaacaggccgtgttctttctcggtctatgcacccagcaga 2404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 actgctgactggccgcatgacaacaggccgtgttctttctcggtctatgcacccagcaga 180
Query: 2405 acagccgtcgtatatgcacctgcaggtgcagaggacgaatagggc--------acagcag 2456
|||||||||||||||||||||||||||| ||||||||||||||| ||| |||
Sbjct: 181 acagccgtcgtatatgcacctgcaggtgacgaggacgaatagggcacaaccgcacaacag 240
Query: 2457 cggttgttggggaagaacttcagagggatgtact-----gctggtggactgacaccactg 2511
||||| | ||||||||||||||| ||||||||| |||||||| ||||||||||||
Sbjct: 241 cggttatcggggaagaacttcag--ggatgtacttcactgctggtggcctgacaccactg 298
Query: 2512 c----------cacgcgcgatgctgccagatgttgccc-tcgagaccacgtggcaggacg 2560
| |||||||||||||||| ||||||| | |||||||| ||||||||||||
Sbjct: 299 cgagatgcgatcacgcgcgatgctgccggatgttgtcaatcgagaccgcgtggcaggacg 358
Query: 2561 atcagct-attcaggtggataggttagcttaccgatgagctctctcgctttcgagtgact 2619
||| ||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 359 atcggcttattcaggtggataggttagcttatcgatgagctctc--gctttcgagtgact 416
Query: 2620 ggtgaaggaaatggacctcgcacacc 2645
|||| |||||||||||| ||||||||
Sbjct: 417 ggtggaggaaatggaccgcgcacacc 442
Score = 54.0 bits (27), Expect = 7e-005
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 2684 ttttgtacatatggcatcagtaggcattatatcattcatctatctgaaccaaccatttac 2743
|||||||||||| |||||||||||||| ||||||| | | |||||| ||| |||||||
Sbjct: 449 ttttgtacatatcgcatcagtaggcatcgtatcattgaattctctgaatcaatcatttac 508
Query: 2744 gct 2746
|||
Sbjct: 509 gct 511
>gb|CF758823.1|CF758823 DSAF1_37_A07.g1_A011 Drought-stressed after flowering Sorghum bicolor
cDNA clone DSAF1_37_A07_A011 3', mRNA sequence
Length = 535
Score = 482 bits (243), Expect = e-134
Identities = 378/421 (89%), Gaps = 29/421 (6%)
Strand = Plus / Plus
Query: 2250 gttgtttcaagcctgggaagtacaagatcgttttagattctgacgatggccttttcggtg 2309
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 gttgtttcaagcctgggaagtacaagatcgtgttagattctgacgatggccttttcggtg 60
Query: 2310 gatttagtcggcttgatcatgacgctgagtacttcactgctgactggccgcatgacaaca 2369
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 61 gatttagtcggcttgatcatgatgctgagtacttcactgctgactggccgcatgacaaca 120
Query: 2370 ggccgtgttctttctcggtctatgcacccagcagaacagccgtcgtatatgcacctgcag 2429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggccgtgttctttctcggtctatgcacccagcagaacagccgtcgtatatgcacctgcag 180
Query: 2430 gtgcagaggacgaataggg--------cacagcagcggttgttggggaagaacttcagag 2481
||| ||||||||||||||| |||| |||||||| | |||||||||||||||
Sbjct: 181 gtgaagaggacgaatagggcacaaccgcacaacagcggttatcggggaagaacttcag-- 238
Query: 2482 ggatgtact-----gctggtggactgacaccactgc----------cacgcgcgatgctg 2526
||||||||| |||||||| ||||||||||||| ||||||||||||||
Sbjct: 239 ggatgtactccactgctggtggcctgacaccactgcgagatgcgaccacgcgcgatgctg 298
Query: 2527 ccagatgttgccc-tcgagaccacgtggcaggacgatcagct-attcaggtggataggtt 2584
|| ||||||| | |||||||| ||||||||||||||| ||| |||||||||||||||||
Sbjct: 299 ccggatgttgtcaatcgagaccgcgtggcaggacgatcggcttattcaggtggataggtt 358
Query: 2585 agcttaccgatgagctctctcgctttcgagtgactggtgaaggaaatggacctcgcacac 2644
|||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 359 agcttatcgatgagctct--cgctttcgagtgactggtgaaggaaatggaccgcgcacac 416
Query: 2645 c 2645
|
Sbjct: 417 c 417
Score = 48.1 bits (24), Expect = 0.004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 2684 ttttgtacatatggcatcagtaggcattatatcatt 2719
|||||||||||| |||||||||||||| |||||||
Sbjct: 424 ttttgtacatatcgcatcagtaggcatcgtatcatt 459
>gb|CF770707.1|CF770707 DSBF1_9_G04.b1_A010 Drought-stressed before flowering Sorghum bicolor
cDNA clone DSBF1_9_G04_A010 5', mRNA sequence
Length = 195
Score = 323 bits (163), Expect = 5e-086
Identities = 187/195 (95%)
Strand = Plus / Plus
Query: 2176 catctttgagagaggagatttggtcttcgtgttcaacttccactggagcaatagctattt 2235
|||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 1 catcttcgagagaggagatttggtctttgtattcaacttccactggagcaatagctattt 60
Query: 2236 tgactatcgcgttggttgtttcaagcctgggaagtacaagatcgttttagattctgacga 2295
||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 61 tgactatcgtgttggttgtttcaagcctgggaagtacaagatcgtgttacattctgacga 120
Query: 2296 tggccttttcggtggatttagtcggcttgatcatgacgctgagtacttcactgctgactg 2355
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 121 tggccttttcggaggatttagtcggcttgatcatgatgctgagtacttcactgctgactg 180
Query: 2356 gccgcatgacaacag 2370
|||||||||||||||
Sbjct: 181 gccgcatgacaacag 195
>gb|CW437259.1|CW437259 fsbb001f154e17f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f154e17, DNA
sequence
Length = 719
Score = 270 bits (136), Expect = 6e-070
Identities = 151/156 (96%)
Strand = Plus / Plus
Query: 2120 ttcatgacatctgatcactcatatgtatcacggaagcatgaggaggataaggtgatcatc 2179
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 516 ttcatgacatctgatcactcatatgtatcacggaaacatgaggaggataaggtgatcatc 575
Query: 2180 tttgagagaggagatttggtcttcgtgttcaacttccactggagcaatagctattttgac 2239
|| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 576 ttcgagagaggagatttggtctttgtattcaacttccactggagcaatagctattttgac 635
Query: 2240 tatcgcgttggttgtttcaagcctgggaagtacaag 2275
||||| ||||||||||||||||||||||||||||||
Sbjct: 636 tatcgtgttggttgtttcaagcctgggaagtacaag 671
Score = 131 bits (66), Expect = 4e-028
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 2042 ggagatgcagattatcttagatatcgtggtatgcaagagtttgaccaggcaatgcagcac 2101
||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 178 ggagatgcagattatctgagatatcgtggcatgcaagagtttgatcaggcaatgcagcac 237
Query: 2102 cttgagggaaaatatgaa 2119
||||||||||||||||||
Sbjct: 238 cttgagggaaaatatgaa 255
>gb|BG240463.1|BG240463 OV1_30_D01.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 375
Score = 262 bits (132), Expect = 2e-067
Identities = 284/337 (84%)
Strand = Plus / Plus
Query: 897 ggatatatgaatcacatgttggaatgagtagcccggaaccaaagataaatacatatgcta 956
||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||| |
Sbjct: 36 ggatatatgaaacacatgttggaatgagtagcccggaaccgaagataaacacatatgcaa 95
Query: 957 acttcagagatgaggtgcttccaagaattaaaaagcttggatacaatgcagtacagataa 1016
|||| || |||||||| || |||||||| ||||| ||||||||||||||||| || ||||
Sbjct: 96 actttagggatgaggtcctcccaagaataaaaaaacttggatacaatgcagtgcaaataa 155
Query: 1017 tggcaatccaggaacactcttattatgcaagctttgggtaccatgttacgaannnnnnng 1076
|||||||||| || ||||| ||||||| ||||||||| |||||||| || || |
Sbjct: 156 tggcaatccaagagcactcatattatggaagctttggataccatgtaactaatttttttg 215
Query: 1077 ccccaagtagccgttttgggactccagaggacctaaaatctcttattgataaagcgcatg 1136
| |||||||| |||||||| |||||||| || | || ||| | ||||||| ||| ||||
Sbjct: 216 caccaagtagtcgttttggtactccagaagatttgaagtctatgattgatagagcacatg 275
Query: 1137 agcttggcttgctagtgcttatggatattgttcatagtcattcatcaaataataccttgg 1196
||||||| |||||||| || |||||| | || ||||||||| | |||| |||||| |||
Sbjct: 276 agcttggtttgctagttctcatggatgtggtccatagtcatgcgtcaagtaatactctgg 335
Query: 1197 atggtttgaatggtttcgatggcaccgatacacatta 1233
|||| ||||||||||| ||||| || |||||||||||
Sbjct: 336 atgggttgaatggttttgatggtacggatacacatta 372
>gb|CW477931.1|CW477931 fsbb001f235i08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f235i08, DNA
sequence
Length = 707
Score = 234 bits (118), Expect = 4e-059
Identities = 130/134 (97%)
Strand = Plus / Minus
Query: 1172 agtcattcatcaaataataccttggatggtttgaatggtttcgatggcaccgatacacat 1231
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 692 agtcattcatcaaataataccttggccggtttgaatggtttcgatggcactgatacacat 633
Query: 1232 tacttccatggtggtccacgaggccatcattggatgtgggattctcgcctattcaattat 1291
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tacttccatggtggtccacggggccatcattggatgtgggattctcgcctattcaattat 573
Query: 1292 gggagttgggaagt 1305
||||||||||||||
Sbjct: 572 gggagttgggaagt 559
Score = 220 bits (111), Expect = 5e-055
Identities = 123/127 (96%)
Strand = Plus / Minus
Query: 1419 cattcactgggaactatggcgagtattttggatttgccactgatgttgatgcagtagttt 1478
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 162 cattcaccgggaactatggcgagtattttggatttgctactgatgttgatgcagtagttt 103
Query: 1479 acctaatgctggtaaacgatcttattcgtgggctttatccagaagctgtatccattggcg 1538
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 102 acctaatgctggtaaacgatcttattcatgggctttatccagaagctgtatccattggtg 43
Query: 1539 aagatgt 1545
|||||||
Sbjct: 42 aagatgt 36
Score = 184 bits (93), Expect = 3e-044
Identities = 108/113 (95%)
Strand = Plus / Minus
Query: 1304 gttttgagatttctattgtcaaatgcgagatggtggcttgaagaatataaatttgatggg 1363
|||||||||| |||| |||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 482 gttttgagatatctactgtcaaatgcaagatggtggcttgaagaatataagtttgatgga 423
Query: 1364 tttcgatttgatggggtgacctccatgatgtatactcaccatggattacaagt 1416
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tttcgatttgatggggtgacctccatgatgtatactcaccatggattacaagt 370
>gb|CW477932.1|CW477932 fsbb001f235i08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f235i08, DNA
sequence
Length = 702
Score = 220 bits (111), Expect = 5e-055
Identities = 120/123 (97%)
Strand = Plus / Plus
Query: 1172 agtcattcatcaaataataccttggatggtttgaatggtttcgatggcaccgatacacat 1231
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 578 agtcattcatcaaataataccttggacggtttgaatggtttcgatggcactgatacacat 637
Query: 1232 tacttccatggtggtccacgaggccatcattggatgtgggattctcgcctattcaattat 1291
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tacttccatggtggtccacggggccatcattggatgtgggattctcgcctattcaattat 697
Query: 1292 ggg 1294
|||
Sbjct: 698 ggg 700
>gb|CL160894.1|CL160894 104_351_10805315_116_31825_371 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10805315, DNA
sequence
Length = 729
Score = 218 bits (110), Expect = 2e-054
Identities = 122/126 (96%)
Strand = Plus / Plus
Query: 931 ggaaccaaagataaatacatatgctaacttcagagatgaggtgcttccaagaattaaaaa 990
|||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||
Sbjct: 57 ggaaccaaagataaatacgtatgctaacttccgagatgaggtgctgccaagaattaaaag 116
Query: 991 gcttggatacaatgcagtacagataatggcaatccaggaacactcttattatgcaagctt 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 gcttggatacaatgcagtacagataatggcaatccaggaacactcttattatgcaagctt 176
Query: 1051 tgggta 1056
||||||
Sbjct: 177 tgggta 182
Score = 159 bits (80), Expect = 2e-036
Identities = 109/121 (90%)
Strand = Plus / Plus
Query: 1053 ggtaccatgttacgaannnnnnngccccaagtagccgttttgggactccagaggacctaa 1112
|||||||||||||||| || ||||||||||||||||||||||| ||||||||||
Sbjct: 370 ggtaccatgttacgaacttttttgcgccaagtagccgttttgggactcctgaggacctaa 429
Query: 1113 aatctcttattgataaagcgcatgagcttggcttgctagtgcttatggatattgttcata 1172
||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 430 aatctctgattgacaaagcgcatgagcttggcttgctagtgctcatggatattgttcata 489
Query: 1173 g 1173
|
Sbjct: 490 g 490
>gb|AW677699.1|AW677699 WS1_10_H10.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 606
Score = 161 bits (81), Expect = 4e-037
Identities = 125/136 (91%), Gaps = 4/136 (2%)
Strand = Plus / Plus
Query: 2512 ccacgcgcgatgctgccagatgttgccc-tcgagaccacgtggcaggacgatcagct-at 2569
||||||||||||||||| ||||||| | |||||||| ||||||||||||||| ||| ||
Sbjct: 357 ccacgcgcgatgctgccggatgttgtcaatcgagaccgcgtggcaggacgatcggcttat 416
Query: 2570 tcaggtggataggttagcttaccgatgagctctctcgctttcgagtgactggtgaaggaa 2629
||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 417 tcaggtggataggttagcttatcgatgagctctc--gctttcgagtgactggtgaaggaa 474
Query: 2630 atggacctcgcacacc 2645
||||||| ||||||||
Sbjct: 475 atggaccgcgcacacc 490
Score = 48.1 bits (24), Expect = 0.004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 2684 ttttgtacatatggcatcagtaggcattatatcatt 2719
|||||||||||| |||||||||||||| |||||||
Sbjct: 497 ttttgtacatatcgcatcagtaggcatcgtatcatt 532
>gb|CL160893.1|CL160893 104_351_10805315_114_31824_371 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10805315, DNA
sequence
Length = 750
Score = 159 bits (80), Expect = 2e-036
Identities = 109/121 (90%)
Strand = Plus / Minus
Query: 1053 ggtaccatgttacgaannnnnnngccccaagtagccgttttgggactccagaggacctaa 1112
|||||||||||||||| || ||||||||||||||||||||||| ||||||||||
Sbjct: 749 ggtaccatgttacgaacttttttgcgccaagtagccgttttgggactcctgaggacctaa 690
Query: 1113 aatctcttattgataaagcgcatgagcttggcttgctagtgcttatggatattgttcata 1172
||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 689 aatctctgattgacaaagcgcatgagcttggcttgctagtgctcatggatattgttcata 630
Query: 1173 g 1173
|
Sbjct: 629 g 629
>gb|CW501257.1|CW501257 fsbb001f296p20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f296p20, DNA
sequence
Length = 528
Score = 125 bits (63), Expect = 2e-026
Identities = 72/75 (96%)
Strand = Plus / Plus
Query: 2274 agatcgttttagattctgacgatggccttttcggtggatttagtcggcttgatcatgacg 2333
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 352 agatcgtgttagattctgacgatggccttttcgggggatttagtcggcttgatcatgatg 411
Query: 2334 ctgagtacttcactg 2348
|||||||||||||||
Sbjct: 412 ctgagtacttcactg 426
>gb|BG054395.1|BG054395 OV2_3_H07.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 462
Score = 111 bits (56), Expect = 4e-022
Identities = 128/152 (84%)
Strand = Plus / Plus
Query: 531 ttggatttactcgcagcgctgaaggtatcacttacagagaatgggctcctggagcatact 590
||||||||| ||||||||| ||||||||||| || |||||||||||||||||||| |
Sbjct: 308 ttggatttaatcgcagcgcggaaggtatcacctatcgagaatgggctcctggagcacttt 367
Query: 591 ctgcagcattagtaggtgacttcaacaactggaacccaaatgctgatgctatggccagaa 650
|||||||||| || || ||||||||||||||| | |||||||| || |||| || ||
Sbjct: 368 ctgcagcattggtgggcgacttcaacaactgggatccaaatgcagaccgtatgagcaaaa 427
Query: 651 atgagtacggcgtttgggagattttcctgcct 682
|||||| || |||||||||||||| ||||||
Sbjct: 428 atgagtttggtgtttgggagatttttctgcct 459
>gb|BZ335716.1|BZ335716 hz26d08.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hz26d08 5', DNA sequence
Length = 635
Score = 91.7 bits (46), Expect = 3e-016
Identities = 70/78 (89%)
Strand = Plus / Minus
Query: 979 aagaattaaaaagcttggatacaatgcagtacagataatggcaatccaggaacactctta 1038
|||||| ||||| ||||||||||||||||| || |||||||||||||| || ||||| ||
Sbjct: 635 aagaataaaaaaacttggatacaatgcagtgcaaataatggcaatccaagagcactcata 576
Query: 1039 ttatgcaagctttgggta 1056
||||| ||||||||||||
Sbjct: 575 ttatggaagctttgggta 558
>gb|CW288524.1|CW288524 104_767_11411997_148_35539_095 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11411997, DNA
sequence
Length = 604
Score = 85.7 bits (43), Expect = 2e-014
Identities = 112/135 (82%)
Strand = Plus / Plus
Query: 2120 ttcatgacatctgatcactcatatgtatcacggaagcatgaggaggataaggtgatcatc 2179
||||||||||| |||||| ||| | || ||||| ||||||||||||||| |||| |
Sbjct: 149 ttcatgacatccgatcaccagtatatttctcggaaacatgaggaggataagatgattgtg 208
Query: 2180 tttgagagaggagatttggtcttcgtgttcaacttccactggagcaatagctattttgac 2239
||||| | ||||||||||| || ||||||||||||||||| | ||| ||||||||||||
Sbjct: 209 tttgaaaagggagatttggtatttgtgttcaacttccactgcaacaacagctattttgac 268
Query: 2240 tatcgcgttggttgt 2254
|| || ||||||||
Sbjct: 269 taccgtattggttgt 283
>gb|CW342804.1|CW342804 104_844_11487075_148_36174_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11487075, DNA
sequence
Length = 705
Score = 85.7 bits (43), Expect = 2e-014
Identities = 112/135 (82%)
Strand = Plus / Plus
Query: 2120 ttcatgacatctgatcactcatatgtatcacggaagcatgaggaggataaggtgatcatc 2179
||||||||||| |||||| ||| | || ||||| ||||||||||||||| |||| |
Sbjct: 73 ttcatgacatccgatcaccagtatatttctcggaaacatgaggaggataagatgattgtg 132
Query: 2180 tttgagagaggagatttggtcttcgtgttcaacttccactggagcaatagctattttgac 2239
||||| | ||||||||||| || ||||||||||||||||| | ||| ||||||||||||
Sbjct: 133 tttgaaaagggagatttggtatttgtgttcaacttccactgcaacaacagctattttgac 192
Query: 2240 tatcgcgttggttgt 2254
|| || ||||||||
Sbjct: 193 taccgtattggttgt 207
>gb|CW290291.1|CW290291 104_769_11412931_116_35553_072 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11412931, DNA
sequence
Length = 517
Score = 73.8 bits (37), Expect = 8e-011
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 1 ggacttgccgtcggtgctcttcaggaggaaggacgctttctctcg 45
|||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 235 ggacttgccgtcggtgctcttcaggaggaaggacgccatctctcg 279
>gb|BZ335717.1|BZ335717 hz26d08.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hz26d08 5', DNA sequence
Length = 423
Score = 69.9 bits (35), Expect = 1e-009
Identities = 68/79 (86%)
Strand = Plus / Plus
Query: 854 tatgtattcaaacaccctcaacctaagcggcccaagtcactgcggatatatgaatcacat 913
||||| ||||| || ||| ||||||| || || || ||| || ||||||||||| |||||
Sbjct: 93 tatgtgttcaagcatcctaaacctaaacgaccaaaatcattgaggatatatgaaacacat 152
Query: 914 gttggaatgagtagcccgg 932
|||||||||||||||||||
Sbjct: 153 gttggaatgagtagcccgg 171
>gb|CL195061.1|CL195061 104_420_10942098_114_32301_077 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10942098, DNA
sequence
Length = 649
Score = 69.9 bits (35), Expect = 1e-009
Identities = 68/79 (86%)
Strand = Plus / Plus
Query: 854 tatgtattcaaacaccctcaacctaagcggcccaagtcactgcggatatatgaatcacat 913
||||| ||||| || ||| ||||||| || || || ||| || ||||||||||| |||||
Sbjct: 294 tatgtgttcaagcatcctaaacctaaacgaccaaaatcattgaggatatatgaaacacat 353
Query: 914 gttggaatgagtagcccgg 932
|||||||||||||||||||
Sbjct: 354 gttggaatgagtagcccgg 372
Score = 67.9 bits (34), Expect = 5e-009
Identities = 70/82 (85%)
Strand = Plus / Plus
Query: 767 attcctgcctggatcaagttttctgtgcaggctccaggtgaaataccatacaacggtata 826
||||||||||||||||||| || || ||||||||||| |||||||||||| | || |
Sbjct: 4 attcctgcctggatcaagtactcagtacaggctccaggagaaataccatacgatgggctt 63
Query: 827 tattatgacccacctgaagagg 848
|||||||| || ||||||||||
Sbjct: 64 tattatgatcctcctgaagagg 85
>gb|BG054232.1|BG054232 OV2_3_H07.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 497
Score = 67.9 bits (34), Expect = 5e-009
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 2189 ggagatttggtcttcgtgttcaacttccactggagcaatagctattttgactatcgcgtt 2248
||||||||||| || ||||||||||||||||| | ||| |||||||||||||| || ||
Sbjct: 31 ggagatttggtatttgtgttcaacttccactgcaacaacagctattttgactaccgtatt 90
Query: 2249 ggttgt 2254
||||||
Sbjct: 91 ggttgt 96
>gb|BG273480.1|BG273480 OV2_26_C01.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 155
Score = 67.9 bits (34), Expect = 5e-009
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 593 gcagcattagtaggtgacttcaacaactggaacccaaatgctgatgctatggccagaaat 652
|||||||| || || ||||||||||||||| | |||||||| || |||| || ||||
Sbjct: 8 gcagcattggtgggcgacttcaacaactgggatccaaatgcagaccgtatgagcaaaaat 67
Query: 653 gagtacggcgtttgggagattttcctgcctaacaatgc 690
|||| || |||||||||||||| ||||||||||||||
Sbjct: 68 gagtttggtgtttgggagatttttctgcctaacaatgc 105
>gb|CW030254.1|CW030254 104_258_10500145_116_30404 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10500145,
DNA sequence
Length = 833
Score = 61.9 bits (31), Expect = 3e-007
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 47 accgttctgagctgcgctggtgctcctggaa 77
|||||||||||||||||||||||||||||||
Sbjct: 68 accgttctgagctgcgctggtgctcctggaa 98
Score = 60.0 bits (30), Expect = 1e-006
Identities = 71/84 (84%), Gaps = 3/84 (3%)
Strand = Plus / Plus
Query: 204 caactcaaacaacatcagcagtggctgaagcaagctcaggagttgaggctgaggagaggc 263
|||||||| |||| || |||| ||||||||||| ||||| |||||| |||||| ||| ||
Sbjct: 141 caactcaagcaacctctgcagcggctgaagcaatctcagaagttgaagctgagcagaagc 200
Query: 264 ---ctgagctctcagaagtgattg 284
|||||| ||||||||||||||
Sbjct: 201 ctgctgagccctcagaagtgattg 224
Score = 50.1 bits (25), Expect = 0.001
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 399 atgagattgacccaatgttggaagggtttcggggtcaccttgact 443
||||||||||||||||| | ||||||||| || | ||||||||||
Sbjct: 243 atgagattgacccaatgctagaagggttttggtgccaccttgact 287
>gb|CW189460.1|CW189460 104_610_11173976_148_37099_020 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11173976, DNA
sequence
Length = 625
Score = 61.9 bits (31), Expect = 3e-007
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 47 accgttctgagctgcgctggtgctcctggaa 77
|||||||||||||||||||||||||||||||
Sbjct: 516 accgttctgagctgcgctggtgctcctggaa 546
Score = 42.1 bits (21), Expect = 0.27
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 1 ggacttgccgtcggtgctcttcaggaggaaggacgctttct 41
||||||||||||| || | |||||||||||| |||| ||||
Sbjct: 259 ggacttgccgtcgctgtttttcaggaggaagaacgccttct 299
>gb|CW179496.1|CW179496 104_593_11160131_148_36629_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11160131, DNA
sequence
Length = 646
Score = 60.0 bits (30), Expect = 1e-006
Identities = 71/84 (84%), Gaps = 3/84 (3%)
Strand = Plus / Plus
Query: 204 caactcaaacaacatcagcagtggctgaagcaagctcaggagttgaggctgaggagaggc 263
|||||||| |||| || |||| ||||||||||| ||||| |||||| |||||| ||| ||
Sbjct: 49 caactcaagcaacctctgcagcggctgaagcaatctcagaagttgaagctgagcagaagc 108
Query: 264 ---ctgagctctcagaagtgattg 284
|||||| ||||||||||||||
Sbjct: 109 ctgctgagccctcagaagtgattg 132
Score = 50.1 bits (25), Expect = 0.001
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 399 atgagattgacccaatgttggaagggtttcggggtcaccttgact 443
||||||||||||||||| | ||||||||| || | ||||||||||
Sbjct: 151 atgagattgacccaatgctagaagggttttggtgccaccttgact 195
>gb|CW189459.1|CW189459 104_610_11173976_116_37100_020 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11173976, DNA
sequence
Length = 669
Score = 60.0 bits (30), Expect = 1e-006
Identities = 71/84 (84%), Gaps = 3/84 (3%)
Strand = Plus / Minus
Query: 204 caactcaaacaacatcagcagtggctgaagcaagctcaggagttgaggctgaggagaggc 263
|||||||| |||| || |||| ||||||||||| ||||| |||||| |||||| ||| ||
Sbjct: 581 caactcaagcaacctctgcagcggctgaagcaatctcagaagttgaagctgagcagaagc 522
Query: 264 ---ctgagctctcagaagtgattg 284
|||||| ||||||||||||||
Sbjct: 521 ctgctgagccctcagaagtgattg 498
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 47 accgttctgagctgcgctggtgctc 71
|||||||||||||||||||||||||
Sbjct: 653 accgttctgagctgcgctggtgctc 629
Score = 50.1 bits (25), Expect = 0.001
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 399 atgagattgacccaatgttggaagggtttcggggtcaccttgact 443
||||||||||||||||| | ||||||||| || | ||||||||||
Sbjct: 479 atgagattgacccaatgctagaagggttttggtgccaccttgact 435
>gb|CW020954.1|CW020954 104_109_10409259_114_30491 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10409259, DNA
sequence
Length = 708
Score = 58.0 bits (29), Expect = 5e-006
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 662 gtttgggagattttcctgcctaacaatgctgatggttcccctgctattcctcatggctca 721
|||||||||||||| |||||||||||||| |||||| | | ||||||||||||| |
Sbjct: 488 gtttgggagatttttctgcctaacaatgcagatggtacatcacctattcctcatggaact 547
Query: 722 cgtgtaaag 730
|||||||||
Sbjct: 548 cgtgtaaag 556
>gb|CD228917.1|CD228917 CCC1_10_C07.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_10_C07_A007 5', mRNA sequence
Length = 651
Score = 52.0 bits (26), Expect = 3e-004
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 1892 ggaggtgaaggctatctaaatttcatgggaaatgagtttgggcatcctgaatggatagat 1951
|||||||| ||||| | ||||| ||||| ||||||||||| || || |||||||| ||
Sbjct: 412 ggaggtgatggctacttgaattttatggggaatgagtttggtcacccagaatggattgac 471
Query: 1952 tttccaagag 1961
||||||||||
Sbjct: 472 tttccaagag 481
>gb|AF169833.2| Sorghum bicolor seed starch branching enzyme mRNA, complete cds
Length = 2805
Score = 52.0 bits (26), Expect = 3e-004
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 1892 ggaggtgaaggctatctaaatttcatgggaaatgagtttgggcatcctgaatggatagat 1951
|||||||| ||||| | ||||| ||||| ||||||||||| || || |||||||| ||
Sbjct: 1778 ggaggtgatggctacttgaattttatggggaatgagtttggtcacccagaatggattgac 1837
Query: 1952 tttccaagag 1961
||||||||||
Sbjct: 1838 tttccaagag 1847
Score = 42.1 bits (21), Expect = 0.27
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1100 ccagaggacctaaaatctcttattgataa 1128
|||||||||||||||| |||| |||||||
Sbjct: 974 ccagaggacctaaaatatcttgttgataa 1002
>gb|AY304539.1| Sorghum bicolor starch branching enzyme IIb (sbeIIb) gene, partial
cds; nuclear gene for plastid product
Length = 4596
Score = 52.0 bits (26), Expect = 3e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 545 agcgctgaaggtatcacttacagagaatgggctcctggagca 586
||||| ||||||||||| || ||||||||||||||||||||
Sbjct: 4349 agcgcggaaggtatcacctatcgagaatgggctcctggagca 4390
>gb|CW276739.1|CW276739 104_750_11405653_148_35400_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11405653, DNA
sequence
Length = 751
Score = 44.1 bits (22), Expect = 0.069
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 701 cctgctattcctcatggctcac 722
||||||||||||||||||||||
Sbjct: 202 cctgctattcctcatggctcac 181
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 665,035
Number of Sequences: 832831
Number of extensions: 665035
Number of successful extensions: 179624
Number of sequences better than 0.5: 33
Number of HSP's better than 0.5 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 179498
Number of HSP's gapped (non-prelim): 94
length of query: 2756
length of database: 491,359,669
effective HSP length: 21
effective length of query: 2735
effective length of database: 473,870,218
effective search space: 1296035046230
effective search space used: 1296035046230
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)