BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2591297.2.1
(786 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW143823.1|CW143823 104_535_11137619_116_34954_036 Sorgh... 611 e-173
gb|CW143824.1|CW143824 104_535_11137619_148_34958_036 Sorgh... 611 e-173
gb|CW205284.1|CW205284 104_633_11186988_148_36927_038 Sorgh... 611 e-173
gb|CW030005.1|CW030005 104_257_10499999_116_30402 Sorghum m... 595 e-168
gb|BE362164.1|BE362164 DG1_84_F03.g1_A002 Dark Grown 1 (DG1... 587 e-166
gb|BG487539.1|BG487539 EM1_67_C06.b1_A002 Embryo 1 (EM1) So... 539 e-151
gb|BF422100.1|BF422100 FM1_12_H05.g1_A003 Floral-Induced Me... 490 e-136
gb|CD235680.1|CD235680 SS1_37_G02.b1_A012 Salt-stressed see... 430 e-119
gb|BZ780113.1|BZ780113 ii37d04.b1 WGS-SbicolorF (DH5a methy... 303 1e-080
gb|CD235723.1|CD235723 SS1_37_G03.b1_A012 Salt-stressed see... 303 1e-080
gb|BG556223.1|BG556223 EM1_67_C06.g1_A002 Embryo 1 (EM1) So... 297 8e-079
gb|CW375802.1|CW375802 fsbb001f053f12k0 Sorghum methylation... 272 5e-071
gb|CX616464.1|CX616464 GABR1_28_C07.b1_A002 GA- or brassino... 214 9e-054
gb|CW382993.1|CW382993 fsbb001f065e16f0 Sorghum methylation... 202 3e-050
gb|CW030004.1|CW030004 104_257_10499999_114_30401 Sorghum m... 180 1e-043
gb|AW672235.1|AW672235 LG1_358_E01.b1_A002 Light Grown 1 (L... 119 4e-025
gb|BE356553.1|BE356553 DG1_126_C05.b1_A002 Dark Grown 1 (DG... 119 4e-025
gb|CN139539.1|CN139539 OX1_22_E01.g1_A002 Oxidatively-stres... 119 4e-025
gb|CL157536.1|CL157536 104_345_10783651_114_31477_211 Sorgh... 111 1e-022
gb|CN139453.1|CN139453 OX1_22_E01.b1_A002 Oxidatively-stres... 111 1e-022
gb|BZ336934.1|BZ336934 ia84b04.b1 WGS-SbicolorF (JM107 adap... 94 2e-017
gb|CN149618.1|CN149618 WOUND1_63_H04.g1_A002 Wounded leaves... 92 9e-017
gb|CW183415.1|CW183415 104_599_11164604_148_36677_076 Sorgh... 86 6e-015
gb|CL183819.1|CL183819 104_396_10898428_114_31923_268 Sorgh... 70 3e-010
gb|CW215159.1|CW215159 104_647_11194395_116_37165_010 Sorgh... 70 3e-010
gb|CW215160.1|CW215160 104_647_11194395_148_37166_010 Sorgh... 70 3e-010
gb|CW417038.1|CW417038 fsbb001f117n19k0 Sorghum methylation... 70 3e-010
gb|CW459733.1|CW459733 fsbb001f206j20k0 Sorghum methylation... 70 3e-010
gb|CF433608.1|CF433608 NIT1_28_D06.b1_A002 Nitrogen-deficie... 70 3e-010
gb|CN136014.1|CN136014 OX1_40_F12.b1_A002 Oxidatively-stres... 70 3e-010
gb|CN141940.1|CN141940 WOUND1_2_G05.g1_A002 Wounded leaves ... 70 3e-010
gb|CN150879.1|CN150879 WOUND1_72_B09.b1_A002 Wounded leaves... 70 3e-010
gb|CW223045.1|CW223045 104_658_11202698_116_37184_003 Sorgh... 68 1e-009
gb|CW417037.1|CW417037 fsbb001f117n19f0 Sorghum methylation... 66 5e-009
gb|CD229132.1|CD229132 CCC1_13_B02.b1_A007 Callus culture/c... 66 5e-009
gb|CL190655.1|CL190655 104_409_10906227_116_32496_016 Sorgh... 62 8e-008
gb|CW111253.1|CW111253 104_484_11104205_148_34527_023 Sorgh... 62 8e-008
gb|CW128842.1|CW128842 104_510_11114239_116_34758_022 Sorgh... 62 8e-008
gb|CW218469.1|CW218469 104_652_11196207_116_37528_062 Sorgh... 62 8e-008
gb|CW368566.1|CW368566 fsbb001f042j11k0 Sorghum methylation... 62 8e-008
gb|CW436489.1|CW436489 fsbb001f153b24f0 Sorghum methylation... 62 8e-008
gb|CW497689.1|CW497689 fsbb001f290j02k0 Sorghum methylation... 62 8e-008
gb|AW282975.1|AW282975 LG1_206_D03.g1_A002 Light Grown 1 (L... 62 8e-008
gb|AW285132.1|AW285132 LG1_206_E11.g1_A002 Light Grown 1 (L... 62 8e-008
gb|AW676674.1|AW676674 DG1_13_H08.g1_A002 Dark Grown 1 (DG1... 62 8e-008
gb|BE352863.1|BE352863 LG1_267_G09.g1_A002 Light Grown 1 (L... 62 8e-008
gb|BE352864.1|BE352864 LG1_267_G10.g1_A002 Light Grown 1 (L... 62 8e-008
gb|BE356755.1|BE356755 DG1_12_C08.g1_A002 Dark Grown 1 (DG1... 62 8e-008
gb|BG605826.1|BG605826 RHIZ2_81_H11.g1_A003 Rhizome2 (RHIZ2... 62 8e-008
gb|CD235852.1|CD235852 SS1_24_D08.b1_A012 Salt-stressed see... 62 8e-008
gb|CD236573.1|CD236573 SS1_35_F07.b1_A012 Salt-stressed see... 62 8e-008
gb|CN146426.1|CN146426 WOUND1_41_D07.b1_A002 Wounded leaves... 62 8e-008
gb|CX618502.1|CX618502 GABR1_40_B04.b1_A002 GA- or brassino... 62 8e-008
gb|CX621250.1|CX621250 GABR1_57_A12.b1_A002 GA- or brassino... 62 8e-008
gb|CW169284.1|CW169284 104_579_11154593_116_36499_075 Sorgh... 58 1e-006
gb|CW169285.1|CW169285 104_579_11154593_148_36500_075 Sorgh... 58 1e-006
gb|CW229299.1|CW229299 104_670_11207230_116_37262_087 Sorgh... 58 1e-006
gb|CW229300.1|CW229300 104_670_11207230_148_37261_087 Sorgh... 58 1e-006
gb|CW428512.1|CW428512 fsbb001f141e03k0 Sorghum methylation... 58 1e-006
gb|CW360174.1|CW360174 fsbb001f028c08k0 Sorghum methylation... 56 5e-006
gb|CW370182.1|CW370182 fsbb001f044p12f0 Sorghum methylation... 56 5e-006
gb|CW370183.1|CW370183 fsbb001f044p12k0 Sorghum methylation... 56 5e-006
gb|BF586555.1|BF586555 FM1_29_F11.g1_A003 Floral-Induced Me... 56 5e-006
gb|CN136100.1|CN136100 OX1_40_F12.g1_A002 Oxidatively-stres... 56 5e-006
gb|CW118138.1|CW118138 104_494_11108040_148_34621_088 Sorgh... 54 2e-005
gb|CW404685.1|CW404685 fsbb001f096o23k0 Sorghum methylation... 54 2e-005
gb|CL154550.1|CL154550 104_339_10781491_114_31371_355 Sorgh... 50 3e-004
gb|CL190997.1|CL190997 104_409_10906473_114_32488_037 Sorgh... 50 3e-004
gb|CL190998.1|CL190998 104_409_10906473_116_32496_037 Sorgh... 50 3e-004
gb|CW032388.1|CW032388 104_261_10501349_115_30364 Sorghum m... 50 3e-004
gb|CW105400.1|CW105400 104_474_11012877_148_34448_085 Sorgh... 50 3e-004
gb|CW163520.1|CW163520 104_571_11151505_116_36453_011 Sorgh... 50 3e-004
gb|CW171234.1|CW171234 104_581_11155631_148_36522_082 Sorgh... 50 3e-004
gb|CW183379.1|CW183379 104_599_11164586_148_36677_011 Sorgh... 50 3e-004
gb|CX616548.1|CX616548 GABR1_28_C07.g1_A002 GA- or brassino... 50 3e-004
gb|BZ779778.1|BZ779778 ii34e07.b1 WGS-SbicolorF (DH5a methy... 48 0.001
gb|BZ779779.1|BZ779779 ii34e07.g1 WGS-SbicolorF (DH5a methy... 48 0.001
gb|CW045087.1|CW045087 104_281_10509350_114_30237 Sorghum m... 48 0.001
gb|CW063398.1|CW063398 104_309_10521981_114_30134 Sorghum m... 48 0.001
gb|CW175933.1|CW175933 104_588_11158217_116_36578_069 Sorgh... 48 0.001
gb|CW175934.1|CW175934 104_588_11158217_148_36579_069 Sorgh... 48 0.001
gb|CW221899.1|CW221899 104_657_11202092_116_37451_078 Sorgh... 48 0.001
gb|CW301137.1|CW301137 104_784_11464043_116_36253_034 Sorgh... 48 0.001
gb|CW306937.1|CW306937 104_792_11467109_116_35709_017 Sorgh... 48 0.001
gb|CW375801.1|CW375801 fsbb001f053f12f0 Sorghum methylation... 48 0.001
gb|CW451375.1|CW451375 fsbb001f191g19f0 Sorghum methylation... 48 0.001
gb|CW493542.1|CW493542 fsbb001f284f17k0 Sorghum methylation... 48 0.001
gb|AW922831.1|AW922831 DG1_46_D12.g1_A002 Dark Grown 1 (DG1... 48 0.001
gb|BG557261.1|BG557261 EM1_44_F08.g1_A002 Embryo 1 (EM1) So... 48 0.001
gb|CF428894.1|CF428894 PH1_18_D09.b1_A002 Phosphorous-defic... 48 0.001
gb|CF428925.1|CF428925 PH1_18_D09.g1_A002 Phosphorous-defic... 48 0.001
gb|CN140043.1|CN140043 OX1_33_E06.g1_A002 Oxidatively-stres... 48 0.001
gb|CN146506.1|CN146506 WOUND1_41_D07.g1_A002 Wounded leaves... 48 0.001
gb|CX616461.1|CX616461 GABR1_28_C04.b1_A002 GA- or brassino... 48 0.001
gb|CX616545.1|CX616545 GABR1_28_C04.g1_A002 GA- or brassino... 48 0.001
gb|CW111252.1|CW111252 104_484_11104205_116_34531_023 Sorgh... 46 0.005
gb|CW120757.1|CW120757 104_498_11109515_148_34653_042 Sorgh... 46 0.005
gb|BF422202.1|BF422202 FM1_13_B11.g1_A003 Floral-Induced Me... 46 0.005
gb|CD226629.1|CD226629 CCC1_47_H10.b1_A007 Callus culture/c... 46 0.005
gb|CN125727.1|CN125727 RHOH1_12_H07.g1_A002 Acid- and alkal... 46 0.005
gb|CW289115.1|CW289115 104_767_11412305_148_35537_065 Sorgh... 42 0.076
gb|CW299072.1|CW299072 104_781_11462920_116_35661_050 Sorgh... 42 0.076
gb|CW299073.1|CW299073 104_781_11462920_148_35657_050 Sorgh... 42 0.076
gb|CW466352.1|CW466352 fsbb001f217i24f0 Sorghum methylation... 42 0.076
gb|BE355210.1|BE355210 DG1_10_F11.g1_A002 Dark Grown 1 (DG1... 42 0.076
gb|BE356646.1|BE356646 DG1_126_C05.g1_A002 Dark Grown 1 (DG... 42 0.076
gb|BE359944.1|BE359944 DG1_58_G02.g2_A002 Dark Grown 1 (DG1... 42 0.076
gb|BG102496.1|BG102496 RHIZ2_33_G06.g1_A003 Rhizome2 (RHIZ2... 42 0.076
gb|CD236019.1|CD236019 SS1_25_C10.b1_A012 Salt-stressed see... 42 0.076
gb|CD428029.1|CD428029 ETH1_32_H05.b1_A002 Ethylene-treated... 42 0.076
gb|CF427951.1|CF427951 PH1_11_F08.g1_A002 Phosphorous-defic... 42 0.076
gb|CF429486.1|CF429486 PH1_22_C12.b1_A002 Phosphorous-defic... 42 0.076
gb|CF429943.1|CF429943 PH1_25_F09.b1_A002 Phosphorous-defic... 42 0.076
gb|CN143916.1|CN143916 WOUND1_19_D07.b1_A002 Wounded leaves... 42 0.076
gb|CN144004.1|CN144004 WOUND1_19_D07.g1_A002 Wounded leaves... 42 0.076
gb|CN151725.1|CN151725 WOUND1_77_E10.b1_A002 Wounded leaves... 42 0.076
gb|CX609201.1|CX609201 ANR1_11_F09.b1_A002 Anaerobic roots ... 42 0.076
gb|CX609287.1|CX609287 ANR1_11_F09.g1_A002 Anaerobic roots ... 42 0.076
gb|CX609326.1|CX609326 ANR1_12_B05.b1_A002 Anaerobic roots ... 42 0.076
gb|CX609406.1|CX609406 ANR1_12_B05.g1_A002 Anaerobic roots ... 42 0.076
gb|CL177479.1|CL177479 104_384_10893857_116_31916_305 Sorgh... 40 0.30
gb|CL177480.1|CL177480 104_384_10893857_148_31915_305 Sorgh... 40 0.30
gb|CL181053.1|CL181053 104_391_10896478_148_31927_238 Sorgh... 40 0.30
gb|CW038952.1|CW038952 104_271_10505213_114_30387 Sorghum m... 40 0.30
gb|CW055237.1|CW055237 104_296_10516974_114_30174 Sorghum m... 40 0.30
gb|CW206303.1|CW206303 104_635_11187520_148_36964_064 Sorgh... 40 0.30
gb|CW237987.1|CW237987 104_694_11216476_148_37490_006 Sorgh... 40 0.30
gb|CW296300.1|CW296300 104_778_11461430_148_35635_063 Sorgh... 40 0.30
gb|CW383311.1|CW383311 fsbb001f065l21f0 Sorghum methylation... 40 0.30
gb|CW383312.1|CW383312 fsbb001f065l21k0 Sorghum methylation... 40 0.30
gb|CW392153.1|CW392153 fsbb001f078k09f0 Sorghum methylation... 40 0.30
gb|CW396805.1|CW396805 fsbb001f085g15k0 Sorghum methylation... 40 0.30
gb|AW285926.2|AW285926 LG1_255_A06.b1_A002 Light Grown 1 (L... 40 0.30
gb|AW678398.1|AW678398 WS1_15_E05.g1_A002 Water-stressed 1 ... 40 0.30
gb|AW680192.1|AW680192 WS1_4_C09.g1_A002 Water-stressed 1 (... 40 0.30
gb|AW922582.1|AW922582 DG1_45_E11.g1_A002 Dark Grown 1 (DG1... 40 0.30
gb|AW923615.1|AW923615 DG1_56_H08.g1_A002 Dark Grown 1 (DG1... 40 0.30
gb|BE355170.1|BE355170 DG1_10_F05.g1_A002 Dark Grown 1 (DG1... 40 0.30
gb|BE355488.1|BE355488 DG1_114_G02.g1_A002 Dark Grown 1 (DG... 40 0.30
gb|BE356481.1|BE356481 DG1_125_C07.g1_A002 Dark Grown 1 (DG... 40 0.30
gb|BE356504.1|BE356504 DG1_125_G03.g1_A002 Dark Grown 1 (DG... 40 0.30
gb|BE357653.1|BE357653 DG1_21_E10.g1_A002 Dark Grown 1 (DG1... 40 0.30
gb|BE357851.1|BE357851 DG1_22_E09.g1_A002 Dark Grown 1 (DG1... 40 0.30
gb|BE359733.1|BE359733 DG1_56_H08.g2_A002 Dark Grown 1 (DG1... 40 0.30
gb|BE361712.1|BE361712 DG1_81_C11.g1_A002 Dark Grown 1 (DG1... 40 0.30
gb|BE363177.1|BE363177 DG1_9_H02.g1_A002 Dark Grown 1 (DG1)... 40 0.30
gb|BE593178.1|BE593178 WS1_98_E03.g1_A002 Water-stressed 1 ... 40 0.30
gb|BE918392.1|BE918392 OV1_3_A07.g1_A002 Ovary 1 (OV1) Sorg... 40 0.30
gb|BG052635.1|BG052635 RHIZ2_27_D08.g1_A003 Rhizome2 (RHIZ2... 40 0.30
gb|BG103002.1|BG103002 RHIZ2_35_H06.b1_A003 Rhizome2 (RHIZ2... 40 0.30
gb|BG487912.1|BG487912 RHIZ2_60_H06.g1_A003 Rhizome2 (RHIZ2... 40 0.30
gb|BG558117.1|BG558117 RHIZ2_67_A09.g1_A003 Rhizome2 (RHIZ2... 40 0.30
gb|BG605888.1|BG605888 RHIZ2_82_G10.g1_A003 Rhizome2 (RHIZ2... 40 0.30
gb|BG947040.1|BG947040 IP1_2_G11.g1_A002 Immature pannicle ... 40 0.30
gb|BI211637.1|BI211637 IP1_60_A09.g1_A002 Immature pannicle... 40 0.30
gb|BE362870.2|BE362870 DG1_90_E11.b1_A002 Dark Grown 1 (DG1... 40 0.30
gb|CD206211.1|CD206211 HS1_21_H12.b1_A012 Heat-shocked seed... 40 0.30
gb|CD213475.1|CD213475 HS1_41_D06.b1_A012 Heat-shocked seed... 40 0.30
gb|CD224909.1|CD224909 CCC1_37_A05.b1_A007 Callus culture/c... 40 0.30
gb|CD225604.1|CD225604 CCC1_40_G02.b1_A007 Callus culture/c... 40 0.30
gb|CD227391.1|CD227391 CCC1_51_H09.b1_A007 Callus culture/c... 40 0.30
gb|CD228440.1|CD228440 CCC1_7_F10.g1_A007 Callus culture/ce... 40 0.30
gb|CF427555.1|CF427555 PH1_16_E07.b1_A002 Phosphorous-defic... 40 0.30
gb|CF429999.1|CF429999 PH1_25_F09.g1_A002 Phosphorous-defic... 40 0.30
gb|CN126197.1|CN126197 RHOH1_15_E11.g1_A002 Acid- and alkal... 40 0.30
gb|CN131344.1|CN131344 RHOH1_47_H10.b1_A002 Acid- and alkal... 40 0.30
gb|DN552493.1|DN552493 pSHR-RT-A-H1_C07_C085 pSHR Sorghum h... 40 0.30
>gb|CW143823.1|CW143823 104_535_11137619_116_34954_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11137619, DNA
sequence
Length = 601
Score = 611 bits (308), Expect = e-173
Identities = 382/406 (94%), Gaps = 3/406 (0%)
Strand = Plus / Minus
Query: 351 tcagacgtcgcggtcgcgggcgcactcgggcggcacggcggcgccgtagcggtcgcgatc 410
|||||||||||||||||| |||||||||||||||| ||||||| ||||||||||| ||
Sbjct: 583 tcagacgtcgcggtcgcgcgcgcactcgggcggcatggcggcg---tagcggtcgcggtc 527
Query: 411 ggtgcagtagttgtagatggtgtagcggcgcctgacgtcggccaggcggcggtactgcgc 470
|||||||||||||||||||||||||||||| | ||||||||| || ||||||||||||
Sbjct: 526 ggtgcagtagttgtagatggtgtagcggcggcggacgtcggcgagcttgcggtactgcgc 467
Query: 471 ggcgtcgaggtccctgaactccggctggtcccaccagcgcgcgccctgggtggcgcagaa 530
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 466 ggcgtcgaggtccctgaactcgggctggtcccaccagcgcgcgccctgggtggcgcagta 407
Query: 531 gcgcgcctccgcggaggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacgaa 590
||| ||||| ||||||||||||||||||||||||||||| || | |||||||||||||||
Sbjct: 406 gcgggcctcggcggaggcctcgcagccgtcgacgtggaatcccctgtaggaggcgacgaa 347
Query: 591 gggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgtt 650
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 346 gggcgcgttggaccagtccgtcttctcccgcccgccgcgggtcgcccagtcgtcggcgtt 287
Query: 651 ccacaggctggagtagagcttcatcggctggctgaacgggtaccgcacgcccaggtcggc 710
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 286 ccacaggctggagtagagcttcatcggctggctgaacgggtaccgcacccccaggtccga 227
Query: 711 gctcgtgttcttgaacacccggatcggcacgtcgtccacgaagaac 756
|||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 226 gctcgtgttcttgaacacacggatcggcacgtcgtccacgaagaac 181
>gb|CW143824.1|CW143824 104_535_11137619_148_34958_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11137619, DNA
sequence
Length = 563
Score = 611 bits (308), Expect = e-173
Identities = 382/406 (94%), Gaps = 3/406 (0%)
Strand = Plus / Plus
Query: 351 tcagacgtcgcggtcgcgggcgcactcgggcggcacggcggcgccgtagcggtcgcgatc 410
|||||||||||||||||| |||||||||||||||| ||||||| ||||||||||| ||
Sbjct: 157 tcagacgtcgcggtcgcgcgcgcactcgggcggcatggcggcg---tagcggtcgcggtc 213
Query: 411 ggtgcagtagttgtagatggtgtagcggcgcctgacgtcggccaggcggcggtactgcgc 470
|||||||||||||||||||||||||||||| | ||||||||| || ||||||||||||
Sbjct: 214 ggtgcagtagttgtagatggtgtagcggcggcggacgtcggcgagcttgcggtactgcgc 273
Query: 471 ggcgtcgaggtccctgaactccggctggtcccaccagcgcgcgccctgggtggcgcagaa 530
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 274 ggcgtcgaggtccctgaactcgggctggtcccaccagcgcgcgccctgggtggcgcagta 333
Query: 531 gcgcgcctccgcggaggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacgaa 590
||| ||||| ||||||||||||||||||||||||||||| || | |||||||||||||||
Sbjct: 334 gcgggcctcggcggaggcctcgcagccgtcgacgtggaatcccctgtaggaggcgacgaa 393
Query: 591 gggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgtt 650
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 394 gggcgcgttggaccagtccgtcttctcccgcccgccgcgggtcgcccagtcgtcggcgtt 453
Query: 651 ccacaggctggagtagagcttcatcggctggctgaacgggtaccgcacgcccaggtcggc 710
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 454 ccacaggctggagtagagcttcatcggctggctgaacgggtaccgcacccccaggtccga 513
Query: 711 gctcgtgttcttgaacacccggatcggcacgtcgtccacgaagaac 756
|||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 514 gctcgtgttcttgaacacacggatcggcacgtcgtccacgaagaac 559
Score = 42.1 bits (21), Expect = 0.076
Identities = 37/41 (90%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 276 acaataccataccatacatacattaca-ggctgctctcgat 315
||||||| |||| |||| ||||||||| |||||||||||||
Sbjct: 60 acaatacaatacgatacgtacattacatggctgctctcgat 100
>gb|CW205284.1|CW205284 104_633_11186988_148_36927_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11186988, DNA
sequence
Length = 705
Score = 611 bits (308), Expect = e-173
Identities = 382/406 (94%), Gaps = 3/406 (0%)
Strand = Plus / Plus
Query: 351 tcagacgtcgcggtcgcgggcgcactcgggcggcacggcggcgccgtagcggtcgcgatc 410
|||||||||||||||||| |||||||||||||||| ||||||| ||||||||||| ||
Sbjct: 142 tcagacgtcgcggtcgcgcgcgcactcgggcggcatggcggcg---tagcggtcgcggtc 198
Query: 411 ggtgcagtagttgtagatggtgtagcggcgcctgacgtcggccaggcggcggtactgcgc 470
|||||||||||||||||||||||||||||| | ||||||||| || ||||||||||||
Sbjct: 199 ggtgcagtagttgtagatggtgtagcggcggcggacgtcggcgagcttgcggtactgcgc 258
Query: 471 ggcgtcgaggtccctgaactccggctggtcccaccagcgcgcgccctgggtggcgcagaa 530
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 259 ggcgtcgaggtccctgaactcgggctggtcccaccagcgcgcgccctgggtggcgcagta 318
Query: 531 gcgcgcctccgcggaggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacgaa 590
||| ||||| ||||||||||||||||||||||||||||| || | |||||||||||||||
Sbjct: 319 gcgggcctcggcggaggcctcgcagccgtcgacgtggaatcccctgtaggaggcgacgaa 378
Query: 591 gggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgtt 650
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 379 gggcgcgttggaccagtccgtcttctcccgcccgccgcgggtcgcccagtcgtcggcgtt 438
Query: 651 ccacaggctggagtagagcttcatcggctggctgaacgggtaccgcacgcccaggtcggc 710
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 439 ccacaggctggagtagagcttcatcggctggctgaacgggtaccgcacccccaggtccga 498
Query: 711 gctcgtgttcttgaacacccggatcggcacgtcgtccacgaagaac 756
|||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 499 gctcgtgttcttgaacacacggatcggcacgtcgtccacgaagaac 544
Score = 42.1 bits (21), Expect = 0.076
Identities = 37/41 (90%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 276 acaataccataccatacatacattaca-ggctgctctcgat 315
||||||| |||| |||| ||||||||| |||||||||||||
Sbjct: 45 acaatacaatacgatacgtacattacatggctgctctcgat 85
>gb|CW030005.1|CW030005 104_257_10499999_116_30402 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10499999, DNA
sequence
Length = 839
Score = 595 bits (300), Expect = e-168
Identities = 380/406 (93%), Gaps = 3/406 (0%)
Strand = Plus / Minus
Query: 351 tcagacgtcgcggtcgcgggcgcactcgggcggcacggcggcgccgtagcggtcgcgatc 410
|||||||||||||||||| |||||||||||||||| ||||||| ||||||||||| ||
Sbjct: 723 tcagacgtcgcggtcgcgcgcgcactcgggcggcatggcggcg---tagcggtcgcggtc 667
Query: 411 ggtgcagtagttgtagatggtgtagcggcgcctgacgtcggccaggcggcggtactgcgc 470
|||||||||||||||||||||||||||||| | ||||||||| || ||||||||||||
Sbjct: 666 ggtgcagtagttgtagatggtgtagcggcggcggacgtcggcgagcttgcggtactgcgc 607
Query: 471 ggcgtcgaggtccctgaactccggctggtcccaccagcgcgcgccctgggtggcgcagaa 530
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 606 ggcgtcgaggtccctgaactcgggctggtcccaccagcgcgcgccctgggtggcgcagta 547
Query: 531 gcgcgcctccgcggaggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacgaa 590
||| ||||| ||||||||||||||||||||||||||||| || | |||||||||||||||
Sbjct: 546 gcgggcctcggcggaggcctcgcagccgtcgacgtggaatcccctgtaggaggcgacgaa 487
Query: 591 gggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgtt 650
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 486 gggcgcgttggaccagtccgtcttctcccgcccgccgcgggtcgcccagtcgtcggcgtt 427
Query: 651 ccacaggctggagtagagcttcatcggctggctgaacgggtaccgcacgcccaggtcggc 710
|||||||||||||||||||||||||||||||||||||||||||||||| | || ||| |
Sbjct: 426 ccacaggctggagtagagcttcatcggctggctgaacgggtaccgcacccacaagtccga 367
Query: 711 gctcgtgttcttgaacacccggatcggcacgtcgtccacgaagaac 756
|||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 366 gctcgtgttcttgaacacacggatcggcacgtcgtccacgaagaac 321
Score = 42.1 bits (21), Expect = 0.076
Identities = 37/41 (90%), Gaps = 1/41 (2%)
Strand = Plus / Minus
Query: 276 acaataccataccatacatacattaca-ggctgctctcgat 315
||||||| |||| |||| ||||||||| |||||||||||||
Sbjct: 820 acaatacaatacgatacgtacattacatggctgctctcgat 780
>gb|BE362164.1|BE362164 DG1_84_F03.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 658
Score = 587 bits (296), Expect = e-166
Identities = 370/394 (93%), Gaps = 3/394 (0%)
Strand = Plus / Minus
Query: 351 tcagacgtcgcggtcgcgggcgcactcgggcggcacggcggcgccgtagcggtcgcgatc 410
|||||||||||||||||| |||||||||||||||| ||||||| ||||||||||| ||
Sbjct: 391 tcagacgtcgcggtcgcgcgcgcactcgggcggcatggcggcg---tagcggtcgcggtc 335
Query: 411 ggtgcagtagttgtagatggtgtagcggcgcctgacgtcggccaggcggcggtactgcgc 470
|||||||||||||||||||||||||||||| | ||||||||| || ||||||||||||
Sbjct: 334 ggtgcagtagttgtagatggtgtagcggcggcggacgtcggcgagcttgcggtactgcgc 275
Query: 471 ggcgtcgaggtccctgaactccggctggtcccaccagcgcgcgccctgggtggcgcagaa 530
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 274 ggcgtcgaggtccctgaactcgggctggtcccaccagcgcgcgccctgggtggcgcagta 215
Query: 531 gcgcgcctccgcggaggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacgaa 590
||| ||||| ||||||||||||||||||||||||||||| || | |||||||||||||||
Sbjct: 214 gcgggcctcggcggaggcctcgcagccgtcgacgtggaatcccctgtaggaggcgacgaa 155
Query: 591 gggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgtt 650
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 154 gggcgcgttggaccagtccgtcttctcccgcccgccgcgggtcgcccagtcgtcggcgtt 95
Query: 651 ccacaggctggagtagagcttcatcggctggctgaacgggtaccgcacgcccaggtcggc 710
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 94 ccacaggctggagtagagcttcatcggctggctgaacgggtaccgcacccccaggtccga 35
Query: 711 gctcgtgttcttgaacacccggatcggcacgtcg 744
|||||||||||||||||| |||||||||||||||
Sbjct: 34 gctcgtgttcttgaacacacggatcggcacgtcg 1
Score = 42.1 bits (21), Expect = 0.076
Identities = 37/41 (90%), Gaps = 1/41 (2%)
Strand = Plus / Minus
Query: 276 acaataccataccatacatacattaca-ggctgctctcgat 315
||||||| |||| |||| ||||||||| |||||||||||||
Sbjct: 488 acaatacaatacgatacgtacattacatggctgctctcgat 448
>gb|BG487539.1|BG487539 EM1_67_C06.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 524
Score = 539 bits (272), Expect = e-151
Identities = 315/328 (96%), Gaps = 1/328 (0%)
Strand = Plus / Minus
Query: 459 gcggtactgcgcggcgtcgaggtccctgaactccggctggtcccaccagcgcgcgccctg 518
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 511 gcggtactgcgcggcgtcgaggtccctgaactcgggctggtcccaccagcgcgcgccctg 452
Query: 519 ggtggcgcagaagcgcgcctccgcggaggcctcgcagccgtcgacgtggaagccgcggta 578
|||||||||| |||| ||||| ||||||||||||||||||||||||||||| || | |||
Sbjct: 451 ggtggcgcagtagcgggcctcggcggaggcctcgcagccgtcgacgtggaatcccctgta 392
Query: 579 ggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgccca 638
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 391 ggaggcgacgaagggcgcgttggaccagtccgtcttctcccgcccgccgcgggtcgccca 332
Query: 639 gtcgtcggcgttccacaggctggagtagagcttcatcggctggctgaacgggtaccgcac 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gtcgtcggcgttccacaggctggagtagagcttcatcggctggctgaacgggtaccgcac 272
Query: 699 gcccaggtcggcgctcgtgttcttgaacacccggatcggcacgtcgtccacgaagaacgc 758
|||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 271 ccccaggtccgagctcgtgttcttgaacacacggatcggcacgtcgtccacgaagaacgc 212
Query: 759 gatcatgttagaggttccagaggacgga 786
||||||| ||||||||||||||||||||
Sbjct: 211 gatcatg-tagaggttccagaggacgga 185
>gb|BF422100.1|BF422100 FM1_12_H05.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 492
Score = 490 bits (247), Expect = e-136
Identities = 306/325 (94%), Gaps = 3/325 (0%)
Strand = Plus / Minus
Query: 350 atcagacgtcgcggtcgcgggcgcactcgggcggcacggcggcgccgtagcggtcgcgat 409
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
Sbjct: 322 atcagacgtcgcggtcgcgggcgcactcgggcggcatggcggcg---tagcggtcgcggt 266
Query: 410 cggtgcagtagttgtagatggtgtagcggcgcctgacgtcggccaggcggcggtactgcg 469
||||||||||||||||||||||||||||||| | ||||||||| || |||||||||||
Sbjct: 265 cggtgcagtagttgtagatggtgtagcggcggcggacgtcggcgagcttgcggtactgcg 206
Query: 470 cggcgtcgaggtccctgaactccggctggtcccaccagcgcgcgccctgggtggcgcaga 529
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 205 cggcgtcgaggtccctgaactcgggctggtcccaccagcgcgcgccctgggtggcgcagt 146
Query: 530 agcgcgcctccgcggaggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacga 589
|||| ||||| |||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 145 agcgggcctcggcggaggcctcgcagccgtcgacgtggaagcccctgtaggaggcgacga 86
Query: 590 agggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgt 649
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 85 agggcgcgttggaccagtccgtcttctcccggccgccgcgggtcgcccagtcgtcggcgt 26
Query: 650 tccacaggctggagtagagcttcat 674
|||||||||||||||||||||||||
Sbjct: 25 tccacaggctggagtagagcttcat 1
Score = 56.0 bits (28), Expect = 5e-006
Identities = 54/60 (90%), Gaps = 2/60 (3%)
Strand = Plus / Minus
Query: 259 gacgaacctgacacaca-acaataccataccatacatacattaca-ggctgctctcgatc 316
||||||||||||||||| | ||||| |||| |||| ||||||||| ||||||||||||||
Sbjct: 434 gacgaacctgacacacacataatacaatacgatacgtacattacatggctgctctcgatc 375
>gb|CD235680.1|CD235680 SS1_37_G02.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_37_G02_A012 3', mRNA sequence
Length = 465
Score = 430 bits (217), Expect = e-119
Identities = 279/299 (93%), Gaps = 3/299 (1%)
Strand = Plus / Minus
Query: 351 tcagacgtcgcggtcgcgggcgcactcgggcggcacggcggcgccgtagcggtcgcgatc 410
||||||||||||||||||||||||||||||||||| ||||||| || |||||||| ||
Sbjct: 296 tcagacgtcgcggtcgcgggcgcactcgggcggcatggcggcg---taacggtcgcggtc 240
Query: 411 ggtgcagtagttgtagatggtgtagcggcgcctgacgtcggccaggcggcggtactgcgc 470
|||||||||||||||||||||||||||||| | ||||||||| || ||||||||||||
Sbjct: 239 ggtgcagtagttgtagatggtgtagcggcggcggacgtcggcgagcttgcggtactgcgc 180
Query: 471 ggcgtcgaggtccctgaactccggctggtcccaccagcgcgcgccctgggtggcgcagaa 530
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 179 ggcgtcgaggtccctgaactcgggctggtcccaccagcgcgcgccctgggtggcgcagta 120
Query: 531 gcgcgcctccgcggaggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacgaa 590
||| ||||| ||||||||||||||||||||||||||||| || | |||||||||||||||
Sbjct: 119 gcgggcctcggcggaggcctcgcagccgtcgacgtggaatcccctgtaggaggcgacgaa 60
Query: 591 gggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgt 649
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 59 gggcgcgttggaccagtccgtcttctcccgcccgccgcgggtcgcccagtcgtcggcgt 1
Score = 50.1 bits (25), Expect = 3e-004
Identities = 51/57 (89%), Gaps = 2/57 (3%)
Strand = Plus / Minus
Query: 261 cgaacctgacacaca-acaataccataccatacatacattaca-ggctgctctcgat 315
||||||||||||||| ||||||| ||| |||| ||||||||| |||||||||||||
Sbjct: 411 cgaacctgacacacacacaatacagtacgatacgtacattacatggctgctctcgat 355
>gb|BZ780113.1|BZ780113 ii37d04.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ii37d04, DNA sequence
Length = 471
Score = 303 bits (153), Expect = 1e-080
Identities = 203/219 (92%), Gaps = 3/219 (1%)
Strand = Plus / Plus
Query: 351 tcagacgtcgcggtcgcgggcgcactcgggcggcacggcggcgccgtagcggtcgcgatc 410
|||||||||||||||||| |||||||||||||||| ||||||| ||||||||||| ||
Sbjct: 256 tcagacgtcgcggtcgcgcgcgcactcgggcggcatggcggcg---tagcggtcgcggtc 312
Query: 411 ggtgcagtagttgtagatggtgtagcggcgcctgacgtcggccaggcggcggtactgcgc 470
|||||||||||||||||||||||||||||| | ||||||||| || ||||||||||||
Sbjct: 313 ggtgcagtagttgtagatggtgtagcggcggcggacgtcggcgagcttgcggtactgcgc 372
Query: 471 ggcgtcgaggtccctgaactccggctggtcccaccagcgcgcgccctgggtggcgcagaa 530
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 373 ggcgtcgaggtccctgaactcgggctggtcccaccagcgcgcgccctgggtggcgcagta 432
Query: 531 gcgcgcctccgcggaggcctcgcagccgtcgacgtggaa 569
||| ||||| |||||||||||||||||||||||||||||
Sbjct: 433 gcgggcctcggcggaggcctcgcagccgtcgacgtggaa 471
Score = 42.1 bits (21), Expect = 0.076
Identities = 37/41 (90%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 276 acaataccataccatacatacattaca-ggctgctctcgat 315
||||||| |||| |||| ||||||||| |||||||||||||
Sbjct: 159 acaatacaatacgatacgtacattacatggctgctctcgat 199
>gb|CD235723.1|CD235723 SS1_37_G03.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_37_G03_A012 3', mRNA sequence
Length = 444
Score = 303 bits (153), Expect = 1e-080
Identities = 203/219 (92%), Gaps = 3/219 (1%)
Strand = Plus / Minus
Query: 351 tcagacgtcgcggtcgcgggcgcactcgggcggcacggcggcgccgtagcggtcgcgatc 410
||||||||||||||||||||||||||||||||||| ||||||| || |||||||| ||
Sbjct: 224 tcagacgtcgcggtcgcgggcgcactcgggcggcatggcggcg---taacggtcgcggtc 168
Query: 411 ggtgcagtagttgtagatggtgtagcggcgcctgacgtcggccaggcggcggtactgcgc 470
|||||||||||||||||||||||||||||| | ||||||||| || ||||||||||||
Sbjct: 167 ggtgcagtagttgtagatggtgtagcggcggcggacgtcggcgagcttgcggtactgcgc 108
Query: 471 ggcgtcgaggtccctgaactccggctggtcccaccagcgcgcgccctgggtggcgcagaa 530
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 107 ggcgtcgaggtccctgaactcgggctggtcccaccagcgcgcgccctgggtggcgcagta 48
Query: 531 gcgcgcctccgcggaggcctcgcagccgtcgacgtggaa 569
||| ||||| |||||||||||||||||||||||||||||
Sbjct: 47 gcgggcctcggcggaggcctcgcagccgtcgacgtggaa 9
Score = 50.1 bits (25), Expect = 3e-004
Identities = 51/57 (89%), Gaps = 2/57 (3%)
Strand = Plus / Minus
Query: 261 cgaacctgacacaca-acaataccataccatacatacattaca-ggctgctctcgat 315
||||||||||||||| ||||||| ||| |||| ||||||||| |||||||||||||
Sbjct: 339 cgaacctgacacacacacaatacagtacgatacgtacattacatggctgctctcgat 283
>gb|BG556223.1|BG556223 EM1_67_C06.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 491
Score = 297 bits (150), Expect = 8e-079
Identities = 202/219 (92%), Gaps = 3/219 (1%)
Strand = Plus / Minus
Query: 351 tcagacgtcgcggtcgcgggcgcactcgggcggcacggcggcgccgtagcggtcgcgatc 410
|||||||||||||||||| |||||||||||||||| ||||||| ||||||||||| ||
Sbjct: 224 tcagacgtcgcggtcgcgcgcgcactcgggcggcatggcggcg---tagcggtcgcggtc 168
Query: 411 ggtgcagtagttgtagatggtgtagcggcgcctgacgtcggccaggcggcggtactgcgc 470
|||||||||||||||||||||||||||||| | ||||||||| || ||||||||||||
Sbjct: 167 ggtgcagtagttgtagatggtgtagcggcggcggacgtcggcgagcttgcggtactgcgc 108
Query: 471 ggcgtcgaggtccctgaactccggctggtcccaccagcgcgcgccctgggtggcgcagaa 530
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
Sbjct: 107 ggcgtcgaggtccctgaactcgggctggtcccaccagcgcgcgccctgngtggcgcagta 48
Query: 531 gcgcgcctccgcggaggcctcgcagccgtcgacgtggaa 569
||| ||||| |||||||||||||||||||||||||||||
Sbjct: 47 gcgggcctcggcggaggcctcgcagccgtcgacgtggaa 9
Score = 42.1 bits (21), Expect = 0.076
Identities = 37/41 (90%), Gaps = 1/41 (2%)
Strand = Plus / Minus
Query: 276 acaataccataccatacatacattaca-ggctgctctcgat 315
||||||| |||| |||| ||||||||| |||||||||||||
Sbjct: 321 acaatacaatacgatacgtacattacatggctgctctcgat 281
>gb|CW375802.1|CW375802 fsbb001f053f12k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f053f12, DNA
sequence
Length = 334
Score = 272 bits (137), Expect = 5e-071
Identities = 199/219 (90%), Gaps = 3/219 (1%)
Strand = Plus / Plus
Query: 351 tcagacgtcgcggtcgcgggcgcactcgggcggcacggcggcgccgtagcggtcgcgatc 410
|||||||||||||||||| |||||||||||||||| ||||||| ||||||||||| ||
Sbjct: 102 tcagacgtcgcggtcgcgcgcgcactcgggcggcatggcggcg---tagcggtcgcggtc 158
Query: 411 ggtgcagtagttgtagatggtgtagcggcgcctgacgtcggccaggcggcggtactgcgc 470
||||||||||||||| |||||||||||||| | |||||| || || |||| |||||||
Sbjct: 159 ggtgcagtagttgtaaatggtgtagcggcggcggacgtccgcgagcttgcggcactgcgc 218
Query: 471 ggcgtcgaggtccctgaactccggctggtcccaccagcgcgcgccctgggtggcgcagaa 530
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 219 ggcgtcgaggtccctgaactcgggctggtcccaccagcgcgcgccctgggtggcgcagta 278
Query: 531 gcgcgcctccgcggaggcctcgcagccgtcgacgtggaa 569
|| ||||| |||||||||||||||||||||||||||||
Sbjct: 279 ccgggcctcagcggaggcctcgcagccgtcgacgtggaa 317
Score = 42.1 bits (21), Expect = 0.076
Identities = 37/41 (90%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 276 acaataccataccatacatacattaca-ggctgctctcgat 315
||||||| |||| |||| ||||||||| |||||||||||||
Sbjct: 5 acaatacaatacgatacgtacattacatggctgctctcgat 45
>gb|CX616464.1|CX616464 GABR1_28_C07.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_28_C07_A002 3', mRNA sequence
Length = 380
Score = 214 bits (108), Expect = 9e-054
Identities = 158/174 (90%), Gaps = 3/174 (1%)
Strand = Plus / Minus
Query: 351 tcagacgtcgcggtcgcgggcgcactcgggcggcacggcggcgccgtagcggtcgcgatc 410
|||||||||||||||||| |||||||||||||||| ||||||| || |||||||| ||
Sbjct: 171 tcagacgtcgcggtcgcgcgcgcactcgggcggcatggcggcg---taacggtcgcggtc 115
Query: 411 ggtgcagtagttgtagatggtgtagcggcgcctgacgtcggccaggcggcggtactgcgc 470
||||||||| |||||||||||||||||||| | ||||||||| || ||||||||||||
Sbjct: 114 ggtgcagtaattgtagatggtgtagcggcggcggacgtcggcgagcttgcggtactgcgc 55
Query: 471 ggcgtcgaggtccctgaactccggctggtcccaccagcgcgcgccctgggtggc 524
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 54 ggcgtcaaggtccctgaactcgggctggtcccaccagcgcgcgccctgggtggc 1
Score = 42.1 bits (21), Expect = 0.076
Identities = 37/41 (90%), Gaps = 1/41 (2%)
Strand = Plus / Minus
Query: 276 acaataccataccatacatacattaca-ggctgctctcgat 315
||||||| |||| |||| ||||||||| |||||||||||||
Sbjct: 268 acaatacaatacgatacgtacattacatggctgctctcgat 228
>gb|CW382993.1|CW382993 fsbb001f065e16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f065e16, DNA
sequence
Length = 621
Score = 202 bits (102), Expect = 3e-050
Identities = 114/118 (96%)
Strand = Plus / Plus
Query: 639 gtcgtcggcgttccacaggctggagtagagcttcatcggctggctgaacgggtaccgcac 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtcgtcggcgttccacaggctggagtagagcttcatcggctggctgaacgggtaccgcac 60
Query: 699 gcccaggtcggcgctcgtgttcttgaacacccggatcggcacgtcgtccacgaagaac 756
|||||||| | |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 61 ccccaggtccgagctcgtgttcttgaacacacggatcggcacgtcgtccacgaagaac 118
Score = 48.1 bits (24), Expect = 0.001
Identities = 31/32 (96%), Gaps = 1/32 (3%)
Strand = Plus / Plus
Query: 755 acgcgatcatgttagaggttccagaggacgga 786
|||||||||||| |||||||||||||||||||
Sbjct: 486 acgcgatcatgt-agaggttccagaggacgga 516
>gb|CW030004.1|CW030004 104_257_10499999_114_30401 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10499999, DNA
sequence
Length = 795
Score = 180 bits (91), Expect = 1e-043
Identities = 138/153 (90%), Gaps = 3/153 (1%)
Strand = Plus / Plus
Query: 351 tcagacgtcgcggtcgcgggcgcactcgggcggcacggcggcgccgtagcggtcgcgatc 410
|||||||||||||||||| |||||||||||||||| ||||||| || |||||||| ||
Sbjct: 646 tcagacgtcgcggtcgcgcgcgcactcgggcggcatggcggcg---taacggtcgcggtc 702
Query: 411 ggtgcagtagttgtagatggtgtagcggcgcctgacgtcggccaggcggcggtactgcgc 470
|||||||||||||||||||||||||||||| | ||||||||| || ||||||||||||
Sbjct: 703 ggtgcagtagttgtagatggtgtagcggcggcggacgtcggcgagcttgcggtactgcgc 762
Query: 471 ggcgtcgaggtccctgaactccggctggtccca 503
|||||| |||||||||||||| |||||||||||
Sbjct: 763 ggcgtcaaggtccctgaactcgggctggtccca 795
Score = 42.1 bits (21), Expect = 0.076
Identities = 37/41 (90%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 276 acaataccataccatacatacattaca-ggctgctctcgat 315
||||||| |||| |||| ||||||||| |||||||||||||
Sbjct: 549 acaatacaatacgatacgtacattacatggctgctctcgat 589
>gb|AW672235.1|AW672235 LG1_358_E01.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 549
Score = 119 bits (60), Expect = 4e-025
Identities = 96/108 (88%)
Strand = Plus / Minus
Query: 574 cggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtc 633
||||| |||||| ||||||||||| ||||||||||||||| |||| ||||| | |||
Sbjct: 153 cggtacgaggcggagaagggcgcgtgggaccagtccgtcttgacgcggccgccctgtgtc 94
Query: 634 gcccagtcgtcggcgttccacaggctggagtagagcttcatcggctgg 681
|||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 93 gcccagtcgtcggcgttccacaggctggagtagagccgcatcggctgg 46
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 409 tcggtgcagtagttgtagat 428
||||||||||||||||||||
Sbjct: 357 tcggtgcagtagttgtagat 338
>gb|BE356553.1|BE356553 DG1_126_C05.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 454
Score = 119 bits (60), Expect = 4e-025
Identities = 96/108 (88%)
Strand = Plus / Minus
Query: 574 cggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtc 633
||||| |||||| ||||||||||| ||||||||||||||| |||| ||||| | |||
Sbjct: 369 cggtacgaggcggagaagggcgcgtgggaccagtccgtcttgacgcggccgccctgtgtc 310
Query: 634 gcccagtcgtcggcgttccacaggctggagtagagcttcatcggctgg 681
|||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 309 gcccagtcgtcggcgttccacaggctggagtagagccgcatcggctgg 262
>gb|CN139539.1|CN139539 OX1_22_E01.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_22_E01_A002 5', mRNA sequence
Length = 705
Score = 119 bits (60), Expect = 4e-025
Identities = 96/108 (88%)
Strand = Plus / Minus
Query: 574 cggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtc 633
||||| |||||| ||||||||||| ||||||||||||||| |||| ||||| | |||
Sbjct: 684 cggtacgaggcggagaagggcgcgtgggaccagtccgtcttgacgcggccgccctgtgtc 625
Query: 634 gcccagtcgtcggcgttccacaggctggagtagagcttcatcggctgg 681
|||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 624 gcccagtcgtcggcgttccacaggctggagtagagccgcatcggctgg 577
>gb|CL157536.1|CL157536 104_345_10783651_114_31477_211 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10783651, DNA
sequence
Length = 783
Score = 111 bits (56), Expect = 1e-022
Identities = 95/108 (87%)
Strand = Plus / Plus
Query: 574 cggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtc 633
||||| |||||| ||||||||||| ||||||||||||||| |||| ||||| | |||
Sbjct: 574 cggtacgaggcggagaagggcgcgtgggaccagtccgtcttgacgcggccgccctgtgtc 633
Query: 634 gcccagtcgtcggcgttccacaggctggagtagagcttcatcggctgg 681
|||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 634 gcccagtcgtcggcgttccacaggctggagtaaagccgcatcggctgg 681
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 409 tcggtgcagtagttgtagat 428
||||||||||||||||||||
Sbjct: 370 tcggtgcagtagttgtagat 389
>gb|CN139453.1|CN139453 OX1_22_E01.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_22_E01_A002 3', mRNA sequence
Length = 731
Score = 111 bits (56), Expect = 1e-022
Identities = 95/108 (87%)
Strand = Plus / Minus
Query: 574 cggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtc 633
||||| |||||| ||| ||||||| ||||||||||||||| |||| ||||| | |||
Sbjct: 163 cggtacgaggcggagaaaggcgcgtgggaccagtccgtcttgacgcggccgccctgtgtc 104
Query: 634 gcccagtcgtcggcgttccacaggctggagtagagcttcatcggctgg 681
|||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 103 gcccagtcgtcggcgttccacaggctggagtagagccgcatcggctgg 56
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 409 tcggtgcagtagttgtagat 428
||||||||||||||||||||
Sbjct: 367 tcggtgcagtagttgtagat 348
>gb|BZ336934.1|BZ336934 ia84b04.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ia84b04 5', DNA sequence
Length = 610
Score = 93.7 bits (47), Expect = 2e-017
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 567 gaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgcc 626
|||| |||||||||| | ||||||||||| ||||||||||||||||||| |||||||
Sbjct: 418 gaagtcgcggtaggacgacacgaagggcgccctggaccagtccgtcttctccagcccgcc 477
Query: 627 gcgggtcgcccagtcgtcggcgttcca 653
||| |||||||||||||| ||||||||
Sbjct: 478 gcgcgtcgcccagtcgtccgcgttcca 504
>gb|CN149618.1|CN149618 WOUND1_63_H04.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_63_H04_A002 5', mRNA sequence
Length = 793
Score = 91.7 bits (46), Expect = 9e-017
Identities = 70/78 (89%)
Strand = Plus / Minus
Query: 604 cagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggag 663
||||||||||| |||| ||||| | |||||||||||||||||||||||||||||||||
Sbjct: 793 cagtccgtcttgacgcggccgccctgtgtcgcccagtcgtcggcgttccacaggctggag 734
Query: 664 tagagcttcatcggctgg 681
|||||| ||||||||||
Sbjct: 733 tagagccgcatcggctgg 716
>gb|CW183415.1|CW183415 104_599_11164604_148_36677_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11164604, DNA
sequence
Length = 619
Score = 85.7 bits (43), Expect = 6e-015
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 567 gaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgcc 626
|||| |||||||||| | ||||||||||| ||||||||||||||||||| |||||||
Sbjct: 537 gaagtcgcggtaggacgacacgaagggcgccctggaccagtccgtcttctccagcccgcc 596
Query: 627 gcgggtcgcccagtcgtcggcgt 649
||| |||||||||||||| ||||
Sbjct: 597 gcgcgtcgcccagtcgtccgcgt 619
>gb|CL183819.1|CL183819 104_396_10898428_114_31923_268 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10898428, DNA
sequence
Length = 656
Score = 69.9 bits (35), Expect = 3e-010
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 587 cgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcgg 646
|||| ||||||| ||||||||||||||| |||||||||| | |||||||||||||| |
Sbjct: 559 cgaacggcgcgtgcgaccagtccgtcttcacgcgcccgccctgcgtcgcccagtcgtccg 500
Query: 647 cgttcca 653
|||||||
Sbjct: 499 cgttcca 493
>gb|CW215159.1|CW215159 104_647_11194395_116_37165_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11194395, DNA
sequence
Length = 663
Score = 69.9 bits (35), Expect = 3e-010
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 587 cgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcgg 646
|||| ||||||| ||||||||||||||| |||||||||| | |||||||||||||| |
Sbjct: 436 cgaacggcgcgtgcgaccagtccgtcttcacgcgcccgccctgcgtcgcccagtcgtccg 377
Query: 647 cgttcca 653
|||||||
Sbjct: 376 cgttcca 370
>gb|CW215160.1|CW215160 104_647_11194395_148_37166_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11194395, DNA
sequence
Length = 673
Score = 69.9 bits (35), Expect = 3e-010
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 587 cgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcgg 646
|||| ||||||| ||||||||||||||| |||||||||| | |||||||||||||| |
Sbjct: 551 cgaacggcgcgtgcgaccagtccgtcttcacgcgcccgccctgcgtcgcccagtcgtccg 610
Query: 647 cgttcca 653
|||||||
Sbjct: 611 cgttcca 617
>gb|CW417038.1|CW417038 fsbb001f117n19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f117n19, DNA
sequence
Length = 525
Score = 69.9 bits (35), Expect = 3e-010
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 587 cgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcgg 646
|||| ||||||| ||||||||||||||| |||||||||| | |||||||||||||| |
Sbjct: 380 cgaacggcgcgtgcgaccagtccgtcttcacgcgcccgccctgcgtcgcccagtcgtccg 439
Query: 647 cgttcca 653
|||||||
Sbjct: 440 cgttcca 446
>gb|CW459733.1|CW459733 fsbb001f206j20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f206j20, DNA
sequence
Length = 380
Score = 69.9 bits (35), Expect = 3e-010
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 587 cgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcgg 646
|||| ||||||| ||||||||||||||| |||||||||| | |||||||||||||| |
Sbjct: 157 cgaacggcgcgtgcgaccagtccgtcttcacgcgcccgccctgcgtcgcccagtcgtccg 216
Query: 647 cgttcca 653
|||||||
Sbjct: 217 cgttcca 223
>gb|CF433608.1|CF433608 NIT1_28_D06.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_28_D06_A002 3', mRNA sequence
Length = 686
Score = 69.9 bits (35), Expect = 3e-010
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 587 cgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcgg 646
|||| ||||||| ||||||||||||||| |||||||||| | |||||||||||||| |
Sbjct: 115 cgaacggcgcgtgcgaccagtccgtcttcacgcgcccgccctgcgtcgcccagtcgtccg 56
Query: 647 cgttcca 653
|||||||
Sbjct: 55 cgttcca 49
>gb|CN136014.1|CN136014 OX1_40_F12.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_40_F12_A002 3', mRNA sequence
Length = 732
Score = 69.9 bits (35), Expect = 3e-010
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 587 cgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcgg 646
|||| ||||||| ||||||||||||||| |||||||||| | |||||||||||||| |
Sbjct: 115 cgaacggcgcgtgcgaccagtccgtcttcacgcgcccgccctgcgtcgcccagtcgtccg 56
Query: 647 cgttcca 653
|||||||
Sbjct: 55 cgttcca 49
>gb|CN141940.1|CN141940 WOUND1_2_G05.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_2_G05_A002 5', mRNA sequence
Length = 688
Score = 69.9 bits (35), Expect = 3e-010
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 587 cgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcgg 646
|||| ||||||| ||||||||||||||| |||||||||| | |||||||||||||| |
Sbjct: 682 cgaacggcgcgtgcgaccagtccgtcttcacgcgcccgccctgcgtcgcccagtcgtccg 623
Query: 647 cgttcca 653
|||||||
Sbjct: 622 cgttcca 616
>gb|CN150879.1|CN150879 WOUND1_72_B09.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_72_B09_A002 3', mRNA sequence
Length = 738
Score = 69.9 bits (35), Expect = 3e-010
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 587 cgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcgg 646
|||| ||||||| ||||||||||||||| |||||||||| | |||||||||||||| |
Sbjct: 142 cgaacggcgcgtgcgaccagtccgtcttcacgcgcccgccctgcgtcgcccagtcgtccg 83
Query: 647 cgttcca 653
|||||||
Sbjct: 82 cgttcca 76
>gb|CW223045.1|CW223045 104_658_11202698_116_37184_003 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11202698, DNA
sequence
Length = 606
Score = 67.9 bits (34), Expect = 1e-009
Identities = 73/86 (84%)
Strand = Plus / Minus
Query: 574 cggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtc 633
|||||| ||||| ||||||||| | | |||||||||||| |||||||||| | |||
Sbjct: 189 cggtagtaggcgtagaagggcgcctgcgtccagtccgtcttgacgcgcccgccctgcgtc 130
Query: 634 gcccagtcgtcggcgttccacaggct 659
||||| ||||||||||||||||||||
Sbjct: 129 gcccactcgtcggcgttccacaggct 104
>gb|CW417037.1|CW417037 fsbb001f117n19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f117n19, DNA
sequence
Length = 477
Score = 65.9 bits (33), Expect = 5e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 601 gaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttcca 653
||||||||||||||| |||||||||| | |||||||||||||| ||||||||
Sbjct: 469 gaccagtccgtcttcacgcgcccgccctgcgtcgcccagtcgtccgcgttcca 417
>gb|CD229132.1|CD229132 CCC1_13_B02.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_13_B02_A007 3', mRNA sequence
Length = 661
Score = 65.9 bits (33), Expect = 5e-009
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 587 cgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcgg 646
|||| ||||||| ||||||||||||||| |||||||||| | |||||||||||||| |
Sbjct: 65 cgaacggcgcgtgcgaccagtccgtcttcacgcgcccgccctgcgtcgcccagtcgtccg 6
Query: 647 cgttc 651
|||||
Sbjct: 5 cgttc 1
>gb|CL190655.1|CL190655 104_409_10906227_116_32496_016 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10906227, DNA
sequence
Length = 772
Score = 61.9 bits (31), Expect = 8e-008
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 574 cggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtc 633
|||||| |||||||||||||||| | |||||||| ||||| ||||||||| | |||
Sbjct: 308 cggtagtaggcgacgaagggcgcctccgaccagtcggtcttgatgcgcccgccctgcgtc 249
Query: 634 gcccagtcgtcggcgttccacaggctg 660
||||| ||||| |||| ||||||||||
Sbjct: 248 gcccactcgtccgcgtcccacaggctg 222
>gb|CW111253.1|CW111253 104_484_11104205_148_34527_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11104205, DNA
sequence
Length = 660
Score = 61.9 bits (31), Expect = 8e-008
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 583 gcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcg 642
|||||||||||||| ||||||||||||||||| | |||||||| | || ||||| ||
Sbjct: 205 gcgacgaagggcgccttggaccagtccgtcttgacacgcccgccctgcgtggcccactcc 264
Query: 643 tcggcgttccacaggctgg 661
||||||| ||||| |||||
Sbjct: 265 tcggcgtcccacacgctgg 283
Score = 42.1 bits (21), Expect = 0.076
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 408 atcggtgcagtagttgtagat 428
|||||||||||||||||||||
Sbjct: 45 atcggtgcagtagttgtagat 65
>gb|CW128842.1|CW128842 104_510_11114239_116_34758_022 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11114239, DNA
sequence
Length = 667
Score = 61.9 bits (31), Expect = 8e-008
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 574 cggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtc 633
|||||| |||||||||||||||| | |||||||| ||||| ||||||||| | |||
Sbjct: 515 cggtagtaggcgacgaagggcgcctccgaccagtcggtcttgatgcgcccgccctgcgtc 456
Query: 634 gcccagtcgtcggcgttccacaggctg 660
||||| ||||| |||| ||||||||||
Sbjct: 455 gcccactcgtccgcgtcccacaggctg 429
>gb|CW218469.1|CW218469 104_652_11196207_116_37528_062 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11196207, DNA
sequence
Length = 718
Score = 61.9 bits (31), Expect = 8e-008
Identities = 67/79 (84%)
Strand = Plus / Minus
Query: 583 gcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcg 642
|||||||||||||| ||||||||||||||||| | |||||||| | || ||||| ||
Sbjct: 191 gcgacgaagggcgccttggaccagtccgtcttgacacgcccgccctgcgtggcccactcc 132
Query: 643 tcggcgttccacaggctgg 661
||||||| ||||| |||||
Sbjct: 131 tcggcgtcccacacgctgg 113
Score = 42.1 bits (21), Expect = 0.076
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 408 atcggtgcagtagttgtagat 428
|||||||||||||||||||||
Sbjct: 351 atcggtgcagtagttgtagat 331
>gb|CW368566.1|CW368566 fsbb001f042j11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f042j11, DNA
sequence
Length = 594
Score = 61.9 bits (31), Expect = 8e-008
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 583 gcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcg 642
|||||||||||||| ||||||||||||||||| | |||||||| | || ||||| ||
Sbjct: 301 gcgacgaagggcgccttggaccagtccgtcttgacacgcccgccctgcgtggcccactcc 360
Query: 643 tcggcgttccacaggctgg 661
||||||| ||||| |||||
Sbjct: 361 tcggcgtcccacacgctgg 379
Score = 42.1 bits (21), Expect = 0.076
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 408 atcggtgcagtagttgtagat 428
|||||||||||||||||||||
Sbjct: 140 atcggtgcagtagttgtagat 160
>gb|CW436489.1|CW436489 fsbb001f153b24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f153b24, DNA
sequence
Length = 715
Score = 61.9 bits (31), Expect = 8e-008
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 574 cggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtc 633
|||||| |||||||||||||||| | |||||||| ||||| ||||||||| | |||
Sbjct: 388 cggtagtaggcgacgaagggcgcctccgaccagtcggtcttgatgcgcccgccctgcgtc 447
Query: 634 gcccagtcgtcggcgttccacaggctg 660
||||| ||||| |||| ||||||||||
Sbjct: 448 gcccactcgtccgcgtcccacaggctg 474
>gb|CW497689.1|CW497689 fsbb001f290j02k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f290j02, DNA
sequence
Length = 672
Score = 61.9 bits (31), Expect = 8e-008
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 574 cggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtc 633
|||||| |||||||||||||||| | |||||||| ||||| ||||||||| | |||
Sbjct: 194 cggtagtaggcgacgaagggcgcctccgaccagtcggtcttgatgcgcccgccctgcgtc 253
Query: 634 gcccagtcgtcggcgttccacaggctg 660
||||| ||||| |||| ||||||||||
Sbjct: 254 gcccactcgtccgcgtcccacaggctg 280
>gb|AW282975.1|AW282975 LG1_206_D03.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 560
Score = 61.9 bits (31), Expect = 8e-008
Identities = 67/79 (84%)
Strand = Plus / Minus
Query: 583 gcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcg 642
|||||||||||||| ||||||||||||||||| | |||||||| | || ||||| ||
Sbjct: 161 gcgacgaagggcgccttggaccagtccgtcttgacacgcccgccctgcgtggcccactcc 102
Query: 643 tcggcgttccacaggctgg 661
||||||| ||||| |||||
Sbjct: 101 tcggcgtcccacacgctgg 83
Score = 42.1 bits (21), Expect = 0.076
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 408 atcggtgcagtagttgtagat 428
|||||||||||||||||||||
Sbjct: 321 atcggtgcagtagttgtagat 301
>gb|AW285132.1|AW285132 LG1_206_E11.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 574
Score = 61.9 bits (31), Expect = 8e-008
Identities = 67/79 (84%)
Strand = Plus / Minus
Query: 583 gcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcg 642
|||||||||||||| ||||||||||||||||| | |||||||| | || ||||| ||
Sbjct: 175 gcgacgaagggcgccttggaccagtccgtcttgacacgcccgccctgcgtggcccactcc 116
Query: 643 tcggcgttccacaggctgg 661
||||||| ||||| |||||
Sbjct: 115 tcggcgtcccacacgctgg 97
Score = 42.1 bits (21), Expect = 0.076
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 408 atcggtgcagtagttgtagat 428
|||||||||||||||||||||
Sbjct: 335 atcggtgcagtagttgtagat 315
>gb|AW676674.1|AW676674 DG1_13_H08.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 503
Score = 61.9 bits (31), Expect = 8e-008
Identities = 67/79 (84%)
Strand = Plus / Minus
Query: 583 gcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcg 642
|||||||||||||| ||||||||||||||||| | |||||||| | || ||||| ||
Sbjct: 103 gcgacgaagggcgccttggaccagtccgtcttgacacgcccgccctgcgtggcccactcc 44
Query: 643 tcggcgttccacaggctgg 661
||||||| ||||| |||||
Sbjct: 43 tcggcgtcccacacgctgg 25
Score = 42.1 bits (21), Expect = 0.076
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 408 atcggtgcagtagttgtagat 428
|||||||||||||||||||||
Sbjct: 263 atcggtgcagtagttgtagat 243
>gb|BE352863.1|BE352863 LG1_267_G09.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 479
Score = 61.9 bits (31), Expect = 8e-008
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 583 gcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcg 642
|||||||||||||| ||||||||||||||||| | |||||||| | || ||||| ||
Sbjct: 340 gcgacgaagggcgccttggaccagtccgtcttgacacgcccgccctgcgtggcccactcc 399
Query: 643 tcggcgttccacaggctgg 661
||||||| ||||| |||||
Sbjct: 400 tcggcgtcccacacgctgg 418
Score = 42.1 bits (21), Expect = 0.076
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 408 atcggtgcagtagttgtagat 428
|||||||||||||||||||||
Sbjct: 180 atcggtgcagtagttgtagat 200
>gb|BE352864.1|BE352864 LG1_267_G10.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 476
Score = 61.9 bits (31), Expect = 8e-008
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 583 gcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcg 642
|||||||||||||| ||||||||||||||||| | |||||||| | || ||||| ||
Sbjct: 342 gcgacgaagggcgccttggaccagtccgtcttgacacgcccgccctgcgtggcccactcc 401
Query: 643 tcggcgttccacaggctgg 661
||||||| ||||| |||||
Sbjct: 402 tcggcgtcccacacgctgg 420
Score = 42.1 bits (21), Expect = 0.076
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 408 atcggtgcagtagttgtagat 428
|||||||||||||||||||||
Sbjct: 182 atcggtgcagtagttgtagat 202
>gb|BE356755.1|BE356755 DG1_12_C08.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 610
Score = 61.9 bits (31), Expect = 8e-008
Identities = 67/79 (84%)
Strand = Plus / Minus
Query: 583 gcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcg 642
|||||||||||||| ||||||||||||||||| | |||||||| | || ||||| ||
Sbjct: 246 gcgacgaagggcgccttggaccagtccgtcttgacacgcccgccctgcgtggcccactcc 187
Query: 643 tcggcgttccacaggctgg 661
||||||| ||||| |||||
Sbjct: 186 tcggcgtcccacacgctgg 168
Score = 42.1 bits (21), Expect = 0.076
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 408 atcggtgcagtagttgtagat 428
|||||||||||||||||||||
Sbjct: 406 atcggtgcagtagttgtagat 386
>gb|BG605826.1|BG605826 RHIZ2_81_H11.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 700
Score = 61.9 bits (31), Expect = 8e-008
Identities = 67/79 (84%)
Strand = Plus / Minus
Query: 583 gcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcg 642
|||||||||||||| ||||||||||||||||| | |||||||| | || ||||| ||
Sbjct: 323 gcgacgaagggcgccttggaccagtccgtcttgacacgcccgccctgcgtggcccactcc 264
Query: 643 tcggcgttccacaggctgg 661
||||||| ||||| |||||
Sbjct: 263 tcggcgtcccacacgctgg 245
Score = 42.1 bits (21), Expect = 0.076
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 408 atcggtgcagtagttgtagat 428
|||||||||||||||||||||
Sbjct: 483 atcggtgcagtagttgtagat 463
>gb|CD235852.1|CD235852 SS1_24_D08.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_24_D08_A012 3', mRNA sequence
Length = 567
Score = 61.9 bits (31), Expect = 8e-008
Identities = 67/79 (84%)
Strand = Plus / Minus
Query: 583 gcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcg 642
|||||||||||||| ||||||||||||||||| | |||||||| | || ||||| ||
Sbjct: 154 gcgacgaagggcgccttggaccagtccgtcttgacacgcccgccctgcgtggcccactcc 95
Query: 643 tcggcgttccacaggctgg 661
||||||| ||||| |||||
Sbjct: 94 tcggcgtcccacacgctgg 76
Score = 42.1 bits (21), Expect = 0.076
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 408 atcggtgcagtagttgtagat 428
|||||||||||||||||||||
Sbjct: 314 atcggtgcagtagttgtagat 294
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 231,386
Number of Sequences: 832831
Number of extensions: 231386
Number of successful extensions: 66470
Number of sequences better than 0.5: 167
Number of HSP's better than 0.5 without gapping: 166
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 66110
Number of HSP's gapped (non-prelim): 335
length of query: 786
length of database: 491,359,669
effective HSP length: 20
effective length of query: 766
effective length of database: 474,703,049
effective search space: 363622535534
effective search space used: 363622535534
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)