BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2591248.2.1
(1222 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW353678.1|CW353678 fsbb001f016i12k0 Sorghum methylation... 771 0.0
gb|CW033055.1|CW033055 104_262_10501739_115_30362 Sorghum m... 533 e-149
gb|CW457121.1|CW457121 fsbb001f202m15k0 Sorghum methylation... 515 e-144
gb|CW495626.1|CW495626 fsbb001f287h17k0 Sorghum methylation... 418 e-115
gb|CW176515.1|CW176515 104_589_11158529_116_36582_071 Sorgh... 398 e-109
gb|BZ628294.1|BZ628294 ih59b05.b1 WGS-SbicolorF (DH5a methy... 359 4e-097
gb|CW352451.1|CW352451 fsbb001f014l19f0 Sorghum methylation... 309 3e-082
gb|CW352452.1|CW352452 fsbb001f014l19k0 Sorghum methylation... 309 3e-082
gb|CW091946.1|CW091946 104_454_10998859_114_33038_078 Sorgh... 254 2e-065
gb|CW021193.1|CW021193 104_109_10409403_114_30491 Sorghum m... 228 1e-057
gb|CW072557.1|CW072557 104_325_10592334_116_30542 Sorghum m... 218 9e-055
gb|CW266962.1|CW266962 104_736_11232720_148_35288_082 Sorgh... 202 5e-050
gb|BZ340300.1|BZ340300 ic37h11.g1 WGS-SbicolorF (JM107 adap... 127 3e-027
gb|CW398345.1|CW398345 fsbb001f087l21f0 Sorghum methylation... 123 4e-026
gb|CW398346.1|CW398346 fsbb001f087l21k0 Sorghum methylation... 123 4e-026
gb|CW021194.1|CW021194 104_109_10409403_116_30499 Sorghum m... 121 2e-025
gb|CW033785.1|CW033785 104_263_10502155_114_30359 Sorghum m... 121 2e-025
gb|CW034384.1|CW034384 104_264_10502515_115_30380 Sorghum m... 121 2e-025
gb|BZ333607.1|BZ333607 hx71c11.b1 WGS-SbicolorF (JM107 adap... 115 1e-023
gb|CN140508.1|CN140508 OX1_36_E09.g1_A002 Oxidatively-stres... 109 6e-022
gb|CW370027.1|CW370027 fsbb001f044l21f0 Sorghum methylation... 101 1e-019
gb|CW228817.1|CW228817 104_668_11206590_116_37254_017 Sorgh... 86 9e-015
gb|CW420858.1|CW420858 fsbb001f128g08k0 Sorghum methylation... 86 9e-015
gb|CW435138.1|CW435138 fsbb001f151c07f0 Sorghum methylation... 86 9e-015
gb|CL182230.1|CL182230 104_393_10897285_116_31922_277 Sorgh... 82 1e-013
gb|CW370028.1|CW370028 fsbb001f044l21k0 Sorghum methylation... 70 5e-010
gb|CW232821.1|CW232821 104_685_11213026_116_37426_037 Sorgh... 64 3e-008
gb|CW369416.1|CW369416 fsbb001f043m24f0 Sorghum methylation... 64 3e-008
gb|CW461110.1|CW461110 fsbb001f208k01f0 Sorghum methylation... 64 3e-008
gb|CW048700.1|CW048700 104_287_10513575_114_30211 Sorghum m... 60 5e-007
gb|CW120150.1|CW120150 104_497_11109164_148_34647_074 Sorgh... 58 2e-006
gb|CW033743.1|CW033743 104_263_10502131_114_30359 Sorghum m... 56 8e-006
gb|CW401861.1|CW401861 fsbb001f092o02f0 Sorghum methylation... 54 3e-005
gb|CW288041.1|CW288041 104_766_11411737_148_35535_009 Sorgh... 50 5e-004
gb|CW472399.1|CW472399 fsbb001f227f05f0 Sorghum methylation... 50 5e-004
gb|CL187169.1|CL187169 104_402_10900699_116_32436_072 Sorgh... 48 0.002
gb|CW027032.1|CW027032 104_253_10498282_114_30533 Sorghum m... 48 0.002
gb|CW029458.1|CW029458 104_257_10499687_114_30401 Sorghum m... 48 0.002
gb|CW042380.1|CW042380 104_276_10507078_116_30489 Sorghum m... 48 0.002
gb|CW096195.1|CW096195 104_461_11001758_148_34329_051 Sorgh... 48 0.002
gb|CW126619.1|CW126619 104_507_11112994_116_34735_041 Sorgh... 48 0.002
gb|CW129046.1|CW129046 104_510_11114345_116_34758_065 Sorgh... 48 0.002
gb|CW133608.1|CW133608 104_517_11116856_116_34809_024 Sorgh... 48 0.002
gb|CW146496.1|CW146496 104_539_11139025_116_34988_007 Sorgh... 48 0.002
gb|CW146497.1|CW146497 104_539_11139025_148_34984_007 Sorgh... 48 0.002
gb|CW339975.1|CW339975 104_840_11485555_148_36139_066 Sorgh... 48 0.002
gb|CW495728.1|CW495728 fsbb001f287k03f0 Sorghum methylation... 48 0.002
gb|CW501758.1|CW501758 fsbb001f297m03k0 Sorghum methylation... 48 0.002
gb|CN138249.1|CN138249 OX1_62_D07.g1_A002 Oxidatively-stres... 48 0.002
gb|CW046815.1|CW046815 104_284_10512366_115_30220 Sorghum m... 46 0.008
gb|CW055949.1|CW055949 104_297_10517417_114_30172 Sorghum m... 46 0.008
gb|CW228058.1|CW228058 104_667_11206152_116_37242_084 Sorgh... 46 0.008
gb|CW276841.1|CW276841 104_750_11405706_148_35401_069 Sorgh... 46 0.008
gb|CW295550.1|CW295550 104_776_11460988_148_35615_002 Sorgh... 46 0.008
gb|CW339974.1|CW339974 104_840_11485555_116_36138_066 Sorgh... 46 0.008
gb|CF432155.1|CF432155 NIT1_14_G07.g1_A002 Nitrogen-deficie... 46 0.008
gb|CL187168.1|CL187168 104_402_10900699_114_32432_072 Sorgh... 42 0.12
gb|CW073512.1|CW073512 104_336_10780083_116_31366_099 Sorgh... 42 0.12
gb|CW077252.1|CW077252 104_379_10891805_116_31769_173 Sorgh... 42 0.12
gb|CW096194.1|CW096194 104_461_11001758_116_34333_051 Sorgh... 42 0.12
gb|CW162358.1|CW162358 104_569_11150900_148_36442_070 Sorgh... 42 0.12
gb|CW228059.1|CW228059 104_667_11206152_148_37241_084 Sorgh... 42 0.12
gb|CW314158.1|CW314158 104_804_11471674_116_35793_035 Sorgh... 42 0.12
gb|CW401862.1|CW401862 fsbb001f092o02k0 Sorghum methylation... 42 0.12
gb|CW412241.1|CW412241 fsbb001f107m14f0 Sorghum methylation... 42 0.12
gb|CD220424.1|CD220424 CCC1_67_F12.b1_A007 Callus culture/c... 42 0.12
gb|BZ779600.1|BZ779600 ii33c07.b1 WGS-SbicolorF (DH5a methy... 40 0.47
gb|CL177305.1|CL177305 104_384_10893746_116_31916_194 Sorgh... 40 0.47
gb|CL182231.1|CL182231 104_393_10897285_148_31921_277 Sorgh... 40 0.47
gb|CW057072.1|CW057072 104_299_10518022_114_30169 Sorghum m... 40 0.47
gb|CW072435.1|CW072435 104_325_10592265_114_30535 Sorghum m... 40 0.47
gb|CW113155.1|CW113155 104_487_11105287_148_34549_026 Sorgh... 40 0.47
gb|CW126620.1|CW126620 104_507_11112994_148_34731_041 Sorgh... 40 0.47
gb|CW166954.1|CW166954 104_576_11153336_148_36679_032 Sorgh... 40 0.47
gb|CW197932.1|CW197932 104_622_11181944_116_36828_024 Sorgh... 40 0.47
gb|CW197933.1|CW197933 104_622_11181944_148_36827_024 Sorgh... 40 0.47
gb|CW203020.1|CW203020 104_629_11185408_116_36915_056 Sorgh... 40 0.47
gb|CW203021.1|CW203021 104_629_11185408_148_37061_056 Sorgh... 40 0.47
gb|CW221667.1|CW221667 104_656_11198033_116_37168_065 Sorgh... 40 0.47
gb|CW235785.1|CW235785 104_691_11215204_116_37493_010 Sorgh... 40 0.47
gb|CW235786.1|CW235786 104_691_11215204_148_37492_010 Sorgh... 40 0.47
gb|CW293656.1|CW293656 104_774_11414772_116_35599_044 Sorgh... 40 0.47
gb|CW295549.1|CW295549 104_776_11460988_116_35619_002 Sorgh... 40 0.47
gb|CW299684.1|CW299684 104_782_11463249_116_35689_035 Sorgh... 40 0.47
gb|CW309882.1|CW309882 104_798_11469425_148_36240_065 Sorgh... 40 0.47
gb|CW408862.1|CW408862 fsbb001f102o23f0 Sorghum methylation... 40 0.47
gb|CW470136.1|CW470136 fsbb001f223d06f0 Sorghum methylation... 40 0.47
gb|CW471036.1|CW471036 fsbb001f224k08f0 Sorghum methylation... 40 0.47
gb|CW493615.1|CW493615 fsbb001f284h14f0 Sorghum methylation... 40 0.47
gb|CD222935.1|CD222935 CCC1_25_F03.b1_A007 Callus culture/c... 40 0.47
gb|CD224287.1|CD224287 CCC1_33_D06.b1_A007 Callus culture/c... 40 0.47
gb|CN126137.1|CN126137 RHOH1_15_H04.b1_A002 Acid- and alkal... 40 0.47
gb|CN137786.1|CN137786 OX1_59_C12.g1_A002 Oxidatively-stres... 40 0.47
gb|CX612015.1|CX612015 ANR1_28_B10.b1_A002 Anaerobic roots ... 40 0.47
>gb|CW353678.1|CW353678 fsbb001f016i12k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f016i12, DNA
sequence
Length = 470
Score = 771 bits (389), Expect = 0.0
Identities = 444/461 (96%), Gaps = 1/461 (0%)
Strand = Plus / Minus
Query: 271 agtcgccgcccgactcggctgggttgggatgtgccgagaagtaggcgaggaggcccatga 330
||||||| || |||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct: 461 agtcgcccccggactcggccgggttggggtgggccgagaagtaggcgaggaggcccatga 402
Query: 331 gcggcgcgttgatgtacgtggtgggctcggactgctggaacacggcgcgcgcgtcgggga 390
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 401 gcggcgcgttgatgtacgtggtgggctcggaatgctggaacacggcgcgcgcgtcgggga 342
Query: 391 aggcgtcggagtcgtcggtgggcccgcccacgacggcgcccacgagcaggttcgggttgg 450
||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 341 aggcgtcggaggcgtcgctgggcccgccgacgacggcgcccacgagcaggttcgggttgg 282
Query: 451 gcgccgggctggtgtagtaggcggcgccggccttgcagccgatccgcgccgggtgcgccg 510
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gcgccgggctggcgtagtaggcggcgccggccttgcagccgatccgcgccgggtgcgccg 222
Query: 511 ccacggacggcagcgagctggcgcggtggtggatccgccgcgggaaccgcgcgccgtacc 570
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 221 ccacggacggcagcgagctggcgcggtggtggatccgccgcgggaaccgggcgccgtacc 162
Query: 571 ccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtccacctgccgcttgg 630
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 161 cgaccatgtacgacatccgcagcgggttgtcgcccaggatgtagtccacctgccgcttgg 102
Query: 631 ccacgcggcggagctgcaccggcgacgccgacgacgagccgcacgagacgcgcccgccgg 690
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 101 ccacgcgccggagctgcaccggcgacgccgacgacgacccgcacgagacgcgcccgccgg 42
Query: 691 cgtggctcaggtagttggagtaggccagcaggaggaacgac 731
|||||||||||||| |||||||||||||||| |||||||||
Sbjct: 41 cgtggctcaggtag-tggagtaggccagcagcaggaacgac 2
>gb|CW033055.1|CW033055 104_262_10501739_115_30362 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10501739, DNA
sequence
Length = 498
Score = 533 bits (269), Expect = e-149
Identities = 299/309 (96%)
Strand = Plus / Minus
Query: 271 agtcgccgcccgactcggctgggttgggatgtgccgagaagtaggcgaggaggcccatga 330
|||||||||| |||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct: 309 agtcgccgccggactcggccgggttggggtgggccgagaagtaggcgaggaggcccatga 250
Query: 331 gcggcgcgttgatgtacgtggtgggctcggactgctggaacacggcgcgcgcgtcgggga 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gcggcgcgttgatgtacgtggtgggctcggactgctggaacacggcgcgcgcgtcgggga 190
Query: 391 aggcgtcggagtcgtcggtgggcccgcccacgacggcgcccacgagcaggttcgggttgg 450
||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 189 aggcgtcggaggcgtcgctgggcccgccgacgacggcgcccacgagcaggttcgggttgg 130
Query: 451 gcgccgggctggtgtagtaggcggcgccggccttgcagccgatccgcgccgggtgcgccg 510
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 gcgccgggctggcgtagtaggcggcgccggccttgcagccgatccgcgccgggtgcgccg 70
Query: 511 ccacggacggcagcgagctggcgcggtggtggatccgccgcgggaaccgcgcgccgtacc 570
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 69 ccacggacggcagcgagctggcgcggtggtggatccgccgcgggaaccgggcgccgtacc 10
Query: 571 ccaccatgt 579
| |||||||
Sbjct: 9 cgaccatgt 1
Score = 103 bits (52), Expect = 4e-020
Identities = 55/56 (98%)
Strand = Plus / Minus
Query: 115 aagggagtggctccggttaactagttacaactactcgtacggaactacggatacac 170
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 aagggagtggctctggttaactagttacaactactcgtacggaactacggatacac 439
Score = 85.7 bits (43), Expect = 9e-015
Identities = 49/51 (96%)
Strand = Plus / Minus
Query: 178 caatcgggcccgaacaagacaaaccaaagcccatctaaaatacccaggccc 228
||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 408 caatcgggcccgagcaagacaaaccaaagcccatccaaaatacccaggccc 358
>gb|CW457121.1|CW457121 fsbb001f202m15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f202m15, DNA
sequence
Length = 566
Score = 515 bits (260), Expect = e-144
Identities = 290/300 (96%)
Strand = Plus / Plus
Query: 271 agtcgccgcccgactcggctgggttgggatgtgccgagaagtaggcgaggaggcccatga 330
|||||||||| |||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct: 267 agtcgccgccggactcggccgggttggggtgggccgagaagtaggcgaggaggcccatga 326
Query: 331 gcggcgcgttgatgtacgtggtgggctcggactgctggaacacggcgcgcgcgtcgggga 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gcggcgcgttgatgtacgtggtgggctcggactgctggaacacggcgcgcgcgtcgggga 386
Query: 391 aggcgtcggagtcgtcggtgggcccgcccacgacggcgcccacgagcaggttcgggttgg 450
||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 387 aggcgtcggaggcgtcgctgggcccgccgacgacggcgcccacgagcaggttcgggttgg 446
Query: 451 gcgccgggctggtgtagtaggcggcgccggccttgcagccgatccgcgccgggtgcgccg 510
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gcgccgggctggcgtagtaggcggcgccggccttgcagccgatccgcgccgggtgcgccg 506
Query: 511 ccacggacggcagcgagctggcgcggtggtggatccgccgcgggaaccgcgcgccgtacc 570
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 507 ccacggacggcagcgagctggcgcggtggcggatccgccgcgggaaccgggcgccgtacc 566
Score = 121 bits (61), Expect = 2e-025
Identities = 80/85 (94%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 87 attcctcttccctggtcctttt-gcaggcaagggagtggctccggttaactagttacaac 145
|||||||||||||| || |||| ||||| ||||||||||||| |||||||||||||||||
Sbjct: 53 attcctcttccctgatcttttttgcaggtaagggagtggctctggttaactagttacaac 112
Query: 146 tactcgtacggaactacggatacac 170
|||||||||||||||||||||||||
Sbjct: 113 tactcgtacggaactacggatacac 137
Score = 85.7 bits (43), Expect = 9e-015
Identities = 49/51 (96%)
Strand = Plus / Plus
Query: 178 caatcgggcccgaacaagacaaaccaaagcccatctaaaatacccaggccc 228
||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 168 caatcgggcccgagcaagacaaaccaaagcccatccaaaatacccaggccc 218
>gb|CW495626.1|CW495626 fsbb001f287h17k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f287h17, DNA
sequence
Length = 634
Score = 418 bits (211), Expect = e-115
Identities = 360/410 (87%), Gaps = 6/410 (1%)
Strand = Plus / Minus
Query: 369 aacacggcgcgcgcgtcggggaaggcgtcggagtcgtcggtgggcccgcccacgacggcg 428
|||||||| |||||||| ||||| ||||||| | || | ||||||||||||||||||||
Sbjct: 634 aacacggcccgcgcgtccgggaacgcgtcggtgctgttgctgggcccgcccacgacggcg 575
Query: 429 cccacgagcaggttcgggttgggcgccgggctggtgtagtaggcggcgccggccttgcag 488
||||| |||||||||||||| ||| ||||||| ||||||||||||||||||||||||
Sbjct: 574 cccaccagcaggttcgggttcggcctcgggctgccgtagtaggcggcgccggccttgcac 515
Query: 489 ccgatccgcgccgggtgcgccgccacggacggcagcgagctggcgcggtggtggatccgc 548
|||||||||||||||||||||| ||| |||||||||||||| || |||||||||||||||
Sbjct: 514 ccgatccgcgccgggtgcgccgacaccgacggcagcgagctcgcccggtggtggatccgc 455
Query: 549 cgcgggaaccgcgcgccgtaccccaccatgtacgacatccgcagcgggttgtcgcccagt 608
||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 454 agcgggtaccgcggcccgtaacccaccatgtacgacatccgcagcgggttgtcgcccagg 395
Query: 609 atgtagtccacctgccgcttggccacgcggcggagctgcaccggcgacgccgacgacg-- 666
||||||||||||||||||||||||||||| |||||||||||||||||||| | || |
Sbjct: 394 atgtagtccacctgccgcttggccacgcgccggagctgcaccggcgacgcggcggaggcg 335
Query: 667 ----agccgcacgagacgcgcccgccggcgtggctcaggtagttggagtaggccagcagg 722
||||||| |||||||| || |||||||||| ||||||||||||||||| || |||
Sbjct: 334 ccggagccgcaggagacgcgggcgtcggcgtggctgaggtagttggagtaggcgaggagg 275
Query: 723 aggaacgacagctgcgtcacgtgctgcatgttgctgctcccgaccttgaa 772
||||| || ||| |||||||||||||||||||||| | || ||||||||
Sbjct: 274 aggaaggagagcgacgtcacgtgctgcatgttgctgttgcccaccttgaa 225
Score = 123 bits (62), Expect = 4e-026
Identities = 104/118 (88%)
Strand = Plus / Minus
Query: 783 cctggggagtactggatctgggggtgattggagatgccggggaggagggtgcacatgaag 842
|||||||||||||||||||| ||||| ||||||||| || |||||| |||| ||||||
Sbjct: 126 cctggggagtactggatctgagggtggccggagatgcccggtaggaggctgcagatgaag 67
Query: 843 ttgtcggcgttgacacggaaggactggaagtactcgtccttccccatcagaacctcct 900
||||||||||| ||||||| ||| |||||||||||||||| |||||||| |||||||
Sbjct: 66 ttgtcggcgttctcacggaacgaccggaagtactcgtccttgcccatcagcacctcct 9
>gb|CW176515.1|CW176515 104_589_11158529_116_36582_071 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11158529, DNA
sequence
Length = 496
Score = 398 bits (201), Expect = e-109
Identities = 231/242 (95%), Gaps = 2/242 (0%)
Strand = Plus / Plus
Query: 914 gttgatgccggcgtgcttgttgtcccagccgaactcgttgatggcgtcgctggcgccgag 973
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1 gttgatgccggcgtgcttgttgtcccagccgaactcgttgatggcgtcgcttgcgccgag 60
Query: 974 caccacctcgttcctcttgatgtactcgcggtactcccgccgccgcgtcgccttgtgcag 1033
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 61 caccacctcgttcctcttgatgtactcgcggtactcccgccgccgcgacgccttgtgcag 120
Query: 1034 ccacgccnnnnnnnncacagcagctcgtcctggtatccggagtagtcgcagtagcagggg 1093
||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 121 ccacgcc--gcgccccacagcagctcgtcctggtacccggagtagtcgcagtagcagggg 178
Query: 1094 cacaccgccgcgtggaggctgctgctgtaggggccccggtacttgtccgcgaactcgaac 1153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 cacaccgccgcgtggaggctgctgctgtaggggccccggtacttgtccgcgaactcgaac 238
Query: 1154 ac 1155
||
Sbjct: 239 ac 240
Score = 127 bits (64), Expect = 3e-027
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 1154 acggcgacggcgcggtcgaggaggcgcttggagtaggcggggtcggcgtcgcggaagacg 1213
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 331 acggcgacggcgcggtcgaggaggcgcttggagtaggccgggtcggcgtcgcggaagacg 390
Query: 1214 atggagcc 1221
||||||||
Sbjct: 391 atggagcc 398
>gb|BZ628294.1|BZ628294 ih59b05.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih59b05 5', DNA sequence
Length = 546
Score = 359 bits (181), Expect = 4e-097
Identities = 211/222 (95%), Gaps = 2/222 (0%)
Strand = Plus / Plus
Query: 898 cctttgagatgaggacgttgatgccggcgtgcttgttgtcccagccgaactcgttgatgg 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cctttgagatgaggacgttgatgccggcgtgcttgttgtcccagccgaactcgttgatgg 386
Query: 958 cgtcgctggcgccgagcaccacctcgttcctcttgatgtactcgcggtactcccgccgcc 1017
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cgtcgcttgcgccgagcaccacctcgttcctcttgatgtactcgcggtactcccgccgcc 446
Query: 1018 gcgtcgccttgtgcagccacgccnnnnnnnncacagcagctcgtcctggtatccggagta 1077
||| ||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 447 gcgacgccttgtgcagccacgcc--gcgccccacagcagctcgtcctggtacccggagta 504
Query: 1078 gtcgcagtagcaggggcacaccgccgcgtggaggctgctgct 1119
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtcgcagtagcaggggcacaccgccgcgtggaggctgctgct 546
>gb|CW352451.1|CW352451 fsbb001f014l19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f014l19, DNA
sequence
Length = 228
Score = 309 bits (156), Expect = 3e-082
Identities = 165/168 (98%)
Strand = Plus / Plus
Query: 619 cctgccgcttggccacgcggcggagctgcaccggcgacgccgacgacgagccgcacgaga 678
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 3 cctgccgcttggccacgcgccggagctgcaccggcgacgccgacgacgacccgcacgaga 62
Query: 679 cgcgcccgccggcgtggctcaggtagttggagtaggccagcaggaggaacgacagctgcg 738
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 63 cgcgcccgccggcgtggctcaggtagttggagtaggccagcagcaggaacgacagctgcg 122
Query: 739 tcacgtgctgcatgttgctgctcccgaccttgaacagcagcccgcctg 786
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 tcacgtgctgcatgttgctgctcccgaccttgaacagcagcccgcctg 170
>gb|CW352452.1|CW352452 fsbb001f014l19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f014l19, DNA
sequence
Length = 199
Score = 309 bits (156), Expect = 3e-082
Identities = 165/168 (98%)
Strand = Plus / Minus
Query: 619 cctgccgcttggccacgcggcggagctgcaccggcgacgccgacgacgagccgcacgaga 678
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 198 cctgccgcttggccacgcgccggagctgcaccggcgacgccgacgacgacccgcacgaga 139
Query: 679 cgcgcccgccggcgtggctcaggtagttggagtaggccagcaggaggaacgacagctgcg 738
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 138 cgcgcccgccggcgtggctcaggtagttggagtaggccagcagcaggaacgacagctgcg 79
Query: 739 tcacgtgctgcatgttgctgctcccgaccttgaacagcagcccgcctg 786
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 tcacgtgctgcatgttgctgctcccgaccttgaacagcagcccgcctg 31
>gb|CW091946.1|CW091946 104_454_10998859_114_33038_078 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10998859, DNA
sequence
Length = 439
Score = 254 bits (128), Expect = 2e-065
Identities = 173/188 (92%)
Strand = Plus / Plus
Query: 271 agtcgccgcccgactcggctgggttgggatgtgccgagaagtaggcgaggaggcccatga 330
|||||||||| |||||||| |||||||| || |||||||||||||| |||||||||||||
Sbjct: 232 agtcgccgccggactcggccgggttggggtgggccgagaagtaggctaggaggcccatga 291
Query: 331 gcggcgcgttgatgtacgtggtgggctcggactgctggaacacggcgcgcgcgtcgggga 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gcggcgcgttgatgtacgtggtgggctcggactgctggaacacggcgcgcgcgtcgggga 351
Query: 391 aggcgtcggagtcgtcggtgggcccgcccacgacggcgcccacgagcaggttcgggttgg 450
||||||||||| |||| |||||||||| |||||||||||||| | | || ||||||||
Sbjct: 352 aggcgtcggaggcgtccctgggcccgccgacgacggcgcccacaatcgtgtacgggttgg 411
Query: 451 gcgccggg 458
| ||||||
Sbjct: 412 gtgccggg 419
Score = 121 bits (61), Expect = 2e-025
Identities = 80/85 (94%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 87 attcctcttccctggtcctttt-gcaggcaagggagtggctccggttaactagttacaac 145
|||||||||||||| || |||| ||||| ||||||||||||| |||||||||||||||||
Sbjct: 18 attcctcttccctgatcttttttgcaggtaagggagtggctctggttaactagttacaac 77
Query: 146 tactcgtacggaactacggatacac 170
|||||||||||||||||||||||||
Sbjct: 78 tactcgtacggaactacggatacac 102
Score = 85.7 bits (43), Expect = 9e-015
Identities = 49/51 (96%)
Strand = Plus / Plus
Query: 178 caatcgggcccgaacaagacaaaccaaagcccatctaaaatacccaggccc 228
||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 133 caatcgggcccgagcaagacaaaccaaagcccatccaaaatacccaggccc 183
>gb|CW021193.1|CW021193 104_109_10409403_114_30491 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10409403, DNA
sequence
Length = 426
Score = 228 bits (115), Expect = 1e-057
Identities = 121/123 (98%)
Strand = Plus / Minus
Query: 664 acgagccgcacgagacgcgcccgccggcgtggctcaggtagttggagtaggccagcagga 723
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 426 acgacccgcacgagacgcgcccgccggcgtggctcaggtagttggagtaggccagcagca 367
Query: 724 ggaacgacagctgcgtcacgtgctgcatgttgctgctcccgaccttgaacagcagcccgc 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaacgacagctgcgtcacgtgctgcatgttgctgctcccgaccttgaacagcagcccgc 307
Query: 784 ctg 786
|||
Sbjct: 306 ctg 304
Score = 218 bits (110), Expect = 9e-055
Identities = 116/118 (98%)
Strand = Plus / Minus
Query: 783 cctggggagtactggatctgggggtgattggagatgccggggaggagggtgcacatgaag 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 cctggggagtactggatctgggggtgattggagatgccggggaggagggtgcacatgaag 116
Query: 843 ttgtcggcgttgacacggaaggactggaagtactcgtccttccccatcagaacctcct 900
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 115 ttgtcggcgttgacacggaacgactggaagtactcgtccttccccattagaacctcct 58
>gb|CW072557.1|CW072557 104_325_10592334_116_30542 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10592334, DNA
sequence
Length = 670
Score = 218 bits (110), Expect = 9e-055
Identities = 116/118 (98%)
Strand = Plus / Plus
Query: 783 cctggggagtactggatctgggggtgattggagatgccggggaggagggtgcacatgaag 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 cctggggagtactggatctgggggtgattggagatgccggggaggagggtgcacatgaag 237
Query: 843 ttgtcggcgttgacacggaaggactggaagtactcgtccttccccatcagaacctcct 900
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 238 ttgtcggcgttgacacggaacgactggaagtactcgtccttccccattagaacctcct 295
Score = 97.6 bits (49), Expect = 2e-018
Identities = 49/49 (100%)
Strand = Plus / Plus
Query: 738 gtcacgtgctgcatgttgctgctcccgaccttgaacagcagcccgcctg 786
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtcacgtgctgcatgttgctgctcccgaccttgaacagcagcccgcctg 49
>gb|CW266962.1|CW266962 104_736_11232720_148_35288_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11232720, DNA
sequence
Length = 552
Score = 202 bits (102), Expect = 5e-050
Identities = 162/182 (89%)
Strand = Plus / Plus
Query: 306 gagaagtaggcgaggaggcccatgagcggcgcgttgatgtacgtggtgggctcggactgc 365
|||||||||||||| ||| | | ||||||||||||||||||||||||||||||||||||
Sbjct: 369 gagaagtaggcgagcagggcgagcagcggcgcgttgatgtacgtggtgggctcggactgc 428
Query: 366 tggaacacggcgcgcgcgtcggggaaggcgtcggagtcgtcggtgggcccgcccacgacg 425
||||||||||| |||||||| ||||| ||||||| | || | |||||||||||||||||
Sbjct: 429 tggaacacggcccgcgcgtccgggaacgcgtcggtgctgttgctgggcccgcccacgacg 488
Query: 426 gcgcccacgagcaggttcgggttgggcgccgggctggtgtagtaggcggcgccggccttg 485
|||||||| |||||||||||||| ||| ||||||| |||||| |||||||||||||||
Sbjct: 489 gcgcccaccagcaggttcgggttcggcctcgggctgccgtagtaagcggcgccggccttg 548
Query: 486 ca 487
||
Sbjct: 549 ca 550
>gb|BZ340300.1|BZ340300 ic37h11.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic37h11 5', DNA sequence
Length = 563
Score = 127 bits (64), Expect = 3e-027
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 1154 acggcgacggcgcggtcgaggaggcgcttggagtaggcggggtcggcgtcgcggaagacg 1213
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 66 acggcgacggcgcggtcgaggaggcgcttggagtaggccgggtcggcgtcgcggaagacg 125
Query: 1214 atggagcc 1221
||||||||
Sbjct: 126 atggagcc 133
>gb|CW398345.1|CW398345 fsbb001f087l21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f087l21, DNA
sequence
Length = 759
Score = 123 bits (62), Expect = 4e-026
Identities = 110/126 (87%)
Strand = Plus / Plus
Query: 499 ccgggtgcgccgccacggacggcagcgagctggcgcggtggtggatccgccgcgggaacc 558
|||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||
Sbjct: 429 ccgggtgcgccgccacggacggcagcgacgaggcgcggtggtggatccggcgcgggtacc 488
Query: 559 gcgcgccgtaccccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtcca 618
||||||| ||||||||||||||||||| || ||||||| ||||| | ||||||||
Sbjct: 489 ttccgccgtagcccaccatgtacgacatccccatcgggttgctccccagcaggtagtcca 548
Query: 619 cctgcc 624
||||||
Sbjct: 549 cctgcc 554
Score = 50.1 bits (25), Expect = 5e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 414 ccgcccacgacggcgcccacgagcaggttcgggttgg 450
||||| ||||||||||| ||||||| |||||||||||
Sbjct: 344 ccgccgacgacggcgccgacgagcacgttcgggttgg 380
Score = 40.1 bits (20), Expect = 0.47
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 737 cgtcacgtgctgcatgttgctgctcccgaccttgaacagcagcccgcc 784
|||||||| ||||||||||||| | || | ||||||||||||||||
Sbjct: 667 cgtcacgtactgcatgttgctgtcgctgagcctgaacagcagcccgcc 714
>gb|CW398346.1|CW398346 fsbb001f087l21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f087l21, DNA
sequence
Length = 741
Score = 123 bits (62), Expect = 4e-026
Identities = 110/126 (87%)
Strand = Plus / Minus
Query: 499 ccgggtgcgccgccacggacggcagcgagctggcgcggtggtggatccgccgcgggaacc 558
|||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||
Sbjct: 459 ccgggtgcgccgccacggacggcagcgacgaggcgcggtggtggatccggcgcgggtacc 400
Query: 559 gcgcgccgtaccccaccatgtacgacatccgcagcgggttgtcgcccagtatgtagtcca 618
||||||| ||||||||||||||||||| || ||||||| ||||| | ||||||||
Sbjct: 399 ttccgccgtagcccaccatgtacgacatccccatcgggttgctccccagcaggtagtcca 340
Query: 619 cctgcc 624
||||||
Sbjct: 339 cctgcc 334
Score = 50.1 bits (25), Expect = 5e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 414 ccgcccacgacggcgcccacgagcaggttcgggttgg 450
||||| ||||||||||| ||||||| |||||||||||
Sbjct: 544 ccgccgacgacggcgccgacgagcacgttcgggttgg 508
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 920 gccggcgtgcttgttgtccca 940
|||||||||||||||||||||
Sbjct: 41 gccggcgtgcttgttgtccca 21
Score = 40.1 bits (20), Expect = 0.47
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 737 cgtcacgtgctgcatgttgctgctcccgaccttgaacagcagcccgcc 784
|||||||| ||||||||||||| | || | ||||||||||||||||
Sbjct: 221 cgtcacgtactgcatgttgctgtcgctgagcctgaacagcagcccgcc 174
>gb|CW021194.1|CW021194 104_109_10409403_116_30499 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10409403, DNA
sequence
Length = 707
Score = 121 bits (61), Expect = 2e-025
Identities = 80/85 (94%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 87 attcctcttccctggtcctttt-gcaggcaagggagtggctccggttaactagttacaac 145
|||||||||||||| || |||| ||||| ||||||||||||| |||||||||||||||||
Sbjct: 514 attcctcttccctgatcttttttgcaggtaagggagtggctctggttaactagttacaac 573
Query: 146 tactcgtacggaactacggatacac 170
|||||||||||||||||||||||||
Sbjct: 574 tactcgtacggaactacggatacac 598
>gb|CW033785.1|CW033785 104_263_10502155_114_30359 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10502155, DNA
sequence
Length = 788
Score = 121 bits (61), Expect = 2e-025
Identities = 80/85 (94%), Gaps = 1/85 (1%)
Strand = Plus / Minus
Query: 87 attcctcttccctggtcctttt-gcaggcaagggagtggctccggttaactagttacaac 145
|||||||||||||| || |||| ||||| ||||||||||||| |||||||||||||||||
Sbjct: 147 attcctcttccctgatcttttttgcaggtaagggagtggctctggttaactagttacaac 88
Query: 146 tactcgtacggaactacggatacac 170
|||||||||||||||||||||||||
Sbjct: 87 tactcgtacggaactacggatacac 63
Score = 56.0 bits (28), Expect = 8e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 178 caatcgggcccgaacaagacaaaccaaagccc 209
||||||||||||| ||||||||||||||||||
Sbjct: 32 caatcgggcccgagcaagacaaaccaaagccc 1
>gb|CW034384.1|CW034384 104_264_10502515_115_30380 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10502515, DNA
sequence
Length = 568
Score = 121 bits (61), Expect = 2e-025
Identities = 80/85 (94%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 87 attcctcttccctggtcctttt-gcaggcaagggagtggctccggttaactagttacaac 145
|||||||||||||| || |||| ||||| ||||||||||||| |||||||||||||||||
Sbjct: 336 attcctcttccctgatcttttttgcaggtaagggagtggctctggttaactagttacaac 395
Query: 146 tactcgtacggaactacggatacac 170
|||||||||||||||||||||||||
Sbjct: 396 tactcgtacggaactacggatacac 420
Score = 79.8 bits (40), Expect = 5e-013
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 178 caatcgggcccgaacaagacaaaccaaagcccatctaaaatacccaggccc 228
||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 451 caatcgggcccgagcaagacaaaccaaagcccatccnaaatacccaggccc 501
>gb|BZ333607.1|BZ333607 hx71c11.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hx71c11 5', DNA sequence
Length = 592
Score = 115 bits (58), Expect = 1e-023
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 898 cctttgagatgaggacgttgatgccggcgtgcttgttgtcccagccgaactcgttgat 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 cctttgagatgaggacgttgatgccggcgtgcttgttgtcccagccgaactcgttgat 592
>gb|CN140508.1|CN140508 OX1_36_E09.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_36_E09_A002 5', mRNA sequence
Length = 755
Score = 109 bits (55), Expect = 6e-022
Identities = 58/59 (98%)
Strand = Plus / Minus
Query: 1163 gcgcggtcgaggaggcgcttggagtaggcggggtcggcgtcgcggaagacgatggagcc 1221
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 755 gcgcggtcgaggaggcgcttggagtaggccgggtcggcgtcgcggaagacgatggagcc 697
>gb|CW370027.1|CW370027 fsbb001f044l21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f044l21, DNA
sequence
Length = 716
Score = 101 bits (51), Expect = 1e-019
Identities = 70/75 (93%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 87 attcctcttccctggtcctttt-gcaggcaagggagtggctccggttaactagttacaac 145
|||||||||||||| || |||| ||||| ||||||||||||| |||||||||||||||||
Sbjct: 75 attcctcttccctgatcttttttgcaggtaagggagtggctctggttaactagttacaac 16
Query: 146 tactcgtacggaact 160
|||||||||||||||
Sbjct: 15 tactcgtacggaact 1
>gb|CW228817.1|CW228817 104_668_11206590_116_37254_017 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11206590, DNA
sequence
Length = 650
Score = 85.7 bits (43), Expect = 9e-015
Identities = 91/107 (85%)
Strand = Plus / Minus
Query: 1049 cacagcagctcgtcctggtatccggagtagtcgcagtagcaggggcacaccgccgcgtgg 1108
|||||||||||||||||||| ||||||||| ||||||| | |||||||| |||||
Sbjct: 470 cacagcagctcgtcctggtacccggagtaggagcagtagtacgggcacacgtccgcggcc 411
Query: 1109 aggctgctgctgtaggggccccggtacttgtccgcgaactcgaacac 1155
|||| ||||||||| |||||||| |||||| ||||||||||||||
Sbjct: 410 aggcccgtgctgtaggcgccccggtgcttgtcggcgaactcgaacac 364
Score = 48.1 bits (24), Expect = 0.002
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 920 gccggcgtgcttgttgtcccagccgaac 947
||||||||||||||||||||| ||||||
Sbjct: 597 gccggcgtgcttgttgtcccacccgaac 570
>gb|CW420858.1|CW420858 fsbb001f128g08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f128g08, DNA
sequence
Length = 645
Score = 85.7 bits (43), Expect = 9e-015
Identities = 91/107 (85%)
Strand = Plus / Plus
Query: 1049 cacagcagctcgtcctggtatccggagtagtcgcagtagcaggggcacaccgccgcgtgg 1108
|||||||||||||||||||| ||||||||| ||||||| | |||||||| |||||
Sbjct: 520 cacagcagctcgtcctggtacccggagtaggagcagtagtacgggcacacgtccgcggcc 579
Query: 1109 aggctgctgctgtaggggccccggtacttgtccgcgaactcgaacac 1155
|||| ||||||||| |||||||| |||||| ||||||||||||||
Sbjct: 580 aggcccgtgctgtaggcgccccggtgcttgtcggcgaactcgaacac 626
Score = 85.7 bits (43), Expect = 9e-015
Identities = 82/95 (86%)
Strand = Plus / Plus
Query: 530 ggcgcggtggtggatccgccgcgggaaccgcgcgccgtaccccaccatgtacgacatccg 589
|||||||||||||||||| |||||| ||| ||||||| |||||||||||||||||||
Sbjct: 6 ggcgcggtggtggatccggcgcgggtaccttccgccgtagcccaccatgtacgacatccc 65
Query: 590 cagcgggttgtcgcccagtatgtagtccacctgcc 624
|| ||||||| ||||| | ||||||||||||||
Sbjct: 66 catcgggttgctccccagcaggtagtccacctgcc 100
Score = 48.1 bits (24), Expect = 0.002
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 920 gccggcgtgcttgttgtcccagccgaac 947
||||||||||||||||||||| ||||||
Sbjct: 393 gccggcgtgcttgttgtcccacccgaac 420
Score = 40.1 bits (20), Expect = 0.47
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 737 cgtcacgtgctgcatgttgctgctcccgaccttgaacagcagcccgcc 784
|||||||| ||||||||||||| | || | ||||||||||||||||
Sbjct: 213 cgtcacgtactgcatgttgctgtcgctgagcctgaacagcagcccgcc 260
>gb|CW435138.1|CW435138 fsbb001f151c07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f151c07, DNA
sequence
Length = 650
Score = 85.7 bits (43), Expect = 9e-015
Identities = 91/107 (85%)
Strand = Plus / Plus
Query: 1049 cacagcagctcgtcctggtatccggagtagtcgcagtagcaggggcacaccgccgcgtgg 1108
|||||||||||||||||||| ||||||||| ||||||| | |||||||| |||||
Sbjct: 209 cacagcagctcgtcctggtacccggagtaggagcagtagtacgggcacacgtccgcggcc 268
Query: 1109 aggctgctgctgtaggggccccggtacttgtccgcgaactcgaacac 1155
|||| ||||||||| |||||||| |||||| ||||||||||||||
Sbjct: 269 aggcccgtgctgtaggcgccccggtgcttgtcggcgaactcgaacac 315
Score = 48.1 bits (24), Expect = 0.002
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 920 gccggcgtgcttgttgtcccagccgaac 947
||||||||||||||||||||| ||||||
Sbjct: 82 gccggcgtgcttgttgtcccacccgaac 109
>gb|CL182230.1|CL182230 104_393_10897285_116_31922_277 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10897285, DNA
sequence
Length = 555
Score = 81.8 bits (41), Expect = 1e-013
Identities = 74/85 (87%)
Strand = Plus / Plus
Query: 547 gccgcgggaaccgcgcgccgtaccccaccatgtacgacatccgcagcgggttgtcgccca 606
|||||||| ||||||||||| | || |||||||| |||||| | ||||||| ||||||
Sbjct: 409 gccgcgggtaccgcgcgccgaagccgaccatgtaggacatcgccgccgggttggcgccca 468
Query: 607 gtatgtagtccacctgccgcttggc 631
| |||||||||||||||||||||||
Sbjct: 469 ggatgtagtccacctgccgcttggc 493
Score = 40.1 bits (20), Expect = 0.47
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 411 ggcccgcccacgacggcgcccacgagca 438
|||||||| ||||||||||| |||||||
Sbjct: 273 ggcccgccgacgacggcgccgacgagca 300
>gb|CW370028.1|CW370028 fsbb001f044l21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f044l21, DNA
sequence
Length = 764
Score = 69.9 bits (35), Expect = 5e-010
Identities = 54/59 (91%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 87 attcctcttccctggtcctttt-gcaggcaagggagtggctccggttaactagttacaa 144
|||||||||||||| || |||| ||||| ||||||||||||| ||||||||||||||||
Sbjct: 698 attcctcttccctgatcttttttgcaggtaagggagtggctctggttaactagttacaa 756
>gb|CW232821.1|CW232821 104_685_11213026_116_37426_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11213026, DNA
sequence
Length = 735
Score = 63.9 bits (32), Expect = 3e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 909 aggacgttgatgccggcgtgcttgttgtcccagccgaactcgtt 952
|||||||||| |||||| |||||||||||||| |||||||||||
Sbjct: 391 aggacgttgaggccggcatgcttgttgtcccacccgaactcgtt 434
>gb|CW369416.1|CW369416 fsbb001f043m24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f043m24, DNA
sequence
Length = 632
Score = 63.9 bits (32), Expect = 3e-008
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 909 aggacgttgatgccggcgtgcttgttgtcccagccgaactcgtt 952
|||||||||| |||||| |||||||||||||| |||||||||||
Sbjct: 568 aggacgttgaggccggcatgcttgttgtcccacccgaactcgtt 525
>gb|CW461110.1|CW461110 fsbb001f208k01f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f208k01, DNA
sequence
Length = 483
Score = 63.9 bits (32), Expect = 3e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 909 aggacgttgatgccggcgtgcttgttgtcccagccgaactcgtt 952
|||||||||| |||||| |||||||||||||| |||||||||||
Sbjct: 301 aggacgttgaggccggcatgcttgttgtcccacccgaactcgtt 344
>gb|CW048700.1|CW048700 104_287_10513575_114_30211 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10513575, DNA
sequence
Length = 621
Score = 60.0 bits (30), Expect = 5e-007
Identities = 78/94 (82%)
Strand = Plus / Minus
Query: 1062 cctggtatccggagtagtcgcagtagcaggggcacaccgccgcgtggaggctgctgctgt 1121
||||||| ||||||||| ||||||| | |||||||| ||||| |||| ||||||
Sbjct: 621 cctggtacccggagtaggagcagtagtacgggcacacgtccgcggccaggcccgtgctgt 562
Query: 1122 aggggccccggtacttgtccgcgaactcgaacac 1155
||| |||||||| |||||| ||||||||||||||
Sbjct: 561 aggcgccccggtgcttgtcggcgaactcgaacac 528
>gb|CW120150.1|CW120150 104_497_11109164_148_34647_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11109164, DNA
sequence
Length = 600
Score = 58.0 bits (29), Expect = 2e-006
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 1076 tagtcgcagtagcaggggcacaccgccgcgtggaggctgctgctgtaggggccccggtac 1135
|||||||||||||||||||||||||| | ||||||| | |||||| | ||| |||| |
Sbjct: 600 tagtcgcagtagcaggggcacaccgcgtcccggaggctcccgctgtacgcgccgcggtgc 541
Query: 1136 ttgtccgcgaactcgaacacggcgacggcgcggtcgaggag 1176
|||||||||| ||||||| | |||||||| || |||||
Sbjct: 540 gcgtccgcgaacgcgaacacctccacggcgcgctccaggag 500
>gb|CW033743.1|CW033743 104_263_10502131_114_30359 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10502131, DNA
sequence
Length = 643
Score = 56.0 bits (28), Expect = 8e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 178 caatcgggcccgaacaagacaaaccaaagccc 209
||||||||||||| ||||||||||||||||||
Sbjct: 32 caatcgggcccgagcaagacaaaccaaagccc 1
Score = 40.1 bits (20), Expect = 0.47
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 151 gtacggaactacggatacac 170
||||||||||||||||||||
Sbjct: 82 gtacggaactacggatacac 63
>gb|CW401861.1|CW401861 fsbb001f092o02f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f092o02, DNA
sequence
Length = 567
Score = 54.0 bits (27), Expect = 3e-005
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 920 gccggcgtgcttgttgtcccagccgaactcgttgatggc 958
||||||||||||| |||||||| |||||||||||||||
Sbjct: 514 gccggcgtgcttgacgtcccagctgaactcgttgatggc 552
>gb|CW288041.1|CW288041 104_766_11411737_148_35535_009 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11411737, DNA
sequence
Length = 552
Score = 50.1 bits (25), Expect = 5e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1126 gccccggtacttgtccgcgaactcgaaca 1154
||||||||||||||| |||||||||||||
Sbjct: 310 gccccggtacttgtcggcgaactcgaaca 282
>gb|CW472399.1|CW472399 fsbb001f227f05f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f227f05, DNA
sequence
Length = 387
Score = 50.1 bits (25), Expect = 5e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1126 gccccggtacttgtccgcgaactcgaaca 1154
||||||||||||||| |||||||||||||
Sbjct: 259 gccccggtacttgtcggcgaactcgaaca 287
>gb|CL187169.1|CL187169 104_402_10900699_116_32436_072 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10900699, DNA
sequence
Length = 592
Score = 48.1 bits (24), Expect = 0.002
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 417 cccacgacggcgcccacgagcaggttcgggttgggcgccg 456
||||||||||||||||| |||||||| | || ||||||||
Sbjct: 382 cccacgacggcgcccaccagcaggttggcgtcgggcgccg 421
Score = 46.1 bits (23), Expect = 0.008
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 308 gaagtaggcgaggaggcccatgagcggcgcgttgatgtacgtggtgggctc 358
|||||| ||||| | ||| | |||||||||||||||||| |||| ||||||
Sbjct: 276 gaagtacgcgagaacgccgacgagcggcgcgttgatgtaggtggcgggctc 326
Score = 40.1 bits (20), Expect = 0.47
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 489 ccgatccgcgccgggtgcgc 508
||||||||||||||||||||
Sbjct: 454 ccgatccgcgccgggtgcgc 473
>gb|CW027032.1|CW027032 104_253_10498282_114_30533 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10498282, DNA
sequence
Length = 698
Score = 48.1 bits (24), Expect = 0.002
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1127 ccccggtacttgtccgcgaactcgaaca 1154
|||||||||||||||||||| |||||||
Sbjct: 516 ccccggtacttgtccgcgaaatcgaaca 489
>gb|CW029458.1|CW029458 104_257_10499687_114_30401 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10499687, DNA
sequence
Length = 823
Score = 48.1 bits (24), Expect = 0.002
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 643 gctgcaccggcgacgccgacgacgagcc 670
||||||||||||||| ||||||||||||
Sbjct: 574 gctgcaccggcgacggcgacgacgagcc 601
>gb|CW042380.1|CW042380 104_276_10507078_116_30489 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10507078, DNA
sequence
Length = 675
Score = 48.1 bits (24), Expect = 0.002
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 643 gctgcaccggcgacgccgacgacgagcc 670
||||||||||||||| ||||||||||||
Sbjct: 181 gctgcaccggcgacggcgacgacgagcc 154
>gb|CW096195.1|CW096195 104_461_11001758_148_34329_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11001758, DNA
sequence
Length = 532
Score = 48.1 bits (24), Expect = 0.002
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 417 cccacgacggcgcccacgagcaggttcgggttgggcgccg 456
||||||||||||||||| |||||||| | || ||||||||
Sbjct: 477 cccacgacggcgcccaccagcaggttggcgtcgggcgccg 516
Score = 42.1 bits (21), Expect = 0.12
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 330 agcggcgcgttgatgtacgtggtgggctc 358
||||||||||||||||| |||| ||||||
Sbjct: 393 agcggcgcgttgatgtaggtggcgggctc 421
>gb|CW126619.1|CW126619 104_507_11112994_116_34735_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11112994, DNA
sequence
Length = 505
Score = 48.1 bits (24), Expect = 0.002
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1127 ccccggtacttgtccgcgaactcgaaca 1154
|||||||||||||||||||| |||||||
Sbjct: 383 ccccggtacttgtccgcgaaatcgaaca 356
>gb|CW129046.1|CW129046 104_510_11114345_116_34758_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11114345, DNA
sequence
Length = 623
Score = 48.1 bits (24), Expect = 0.002
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 643 gctgcaccggcgacgccgacgacgagcc 670
||||||||||||||| ||||||||||||
Sbjct: 122 gctgcaccggcgacggcgacgacgagcc 95
>gb|CW133608.1|CW133608 104_517_11116856_116_34809_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11116856, DNA
sequence
Length = 637
Score = 48.1 bits (24), Expect = 0.002
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 643 gctgcaccggcgacgccgacgacgagcc 670
||||||||||||||| ||||||||||||
Sbjct: 549 gctgcaccggcgacggcgacgacgagcc 522
>gb|CW146496.1|CW146496 104_539_11139025_116_34988_007 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11139025, DNA
sequence
Length = 672
Score = 48.1 bits (24), Expect = 0.002
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 643 gctgcaccggcgacgccgacgacgagcc 670
||||||||||||||| ||||||||||||
Sbjct: 329 gctgcaccggcgacggcgacgacgagcc 302
>gb|CW146497.1|CW146497 104_539_11139025_148_34984_007 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11139025, DNA
sequence
Length = 736
Score = 48.1 bits (24), Expect = 0.002
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 643 gctgcaccggcgacgccgacgacgagcc 670
||||||||||||||| ||||||||||||
Sbjct: 429 gctgcaccggcgacggcgacgacgagcc 456
>gb|CW339975.1|CW339975 104_840_11485555_148_36139_066 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485555, DNA
sequence
Length = 670
Score = 48.1 bits (24), Expect = 0.002
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 417 cccacgacggcgcccacgagcaggttcgggttgggcgccg 456
||||||||||||||||| |||||||| | || ||||||||
Sbjct: 165 cccacgacggcgcccaccagcaggttggcgtcgggcgccg 126
Score = 46.1 bits (23), Expect = 0.008
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 308 gaagtaggcgaggaggcccatgagcggcgcgttgatgtacgtggtgggctc 358
|||||| ||||| | ||| | |||||||||||||||||| |||| ||||||
Sbjct: 271 gaagtacgcgagaacgccgacgagcggcgcgttgatgtaggtggcgggctc 221
Score = 40.1 bits (20), Expect = 0.47
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 489 ccgatccgcgccgggtgcgc 508
||||||||||||||||||||
Sbjct: 93 ccgatccgcgccgggtgcgc 74
>gb|CW495728.1|CW495728 fsbb001f287k03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f287k03, DNA
sequence
Length = 638
Score = 48.1 bits (24), Expect = 0.002
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 417 cccacgacggcgcccacgagcaggttcgggttgggcgccg 456
||||||||||||||||| |||||||| | || ||||||||
Sbjct: 108 cccacgacggcgcccaccagcaggttggcgtcgggcgccg 69
Score = 46.1 bits (23), Expect = 0.008
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 308 gaagtaggcgaggaggcccatgagcggcgcgttgatgtacgtggtgggctc 358
|||||| ||||| | ||| | |||||||||||||||||| |||| ||||||
Sbjct: 214 gaagtacgcgagaacgccgacgagcggcgcgttgatgtaggtggcgggctc 164
Score = 40.1 bits (20), Expect = 0.47
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 489 ccgatccgcgccgggtgcgc 508
||||||||||||||||||||
Sbjct: 36 ccgatccgcgccgggtgcgc 17
>gb|CW501758.1|CW501758 fsbb001f297m03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f297m03, DNA
sequence
Length = 660
Score = 48.1 bits (24), Expect = 0.002
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 643 gctgcaccggcgacgccgacgacgagcc 670
||||||||||||||| ||||||||||||
Sbjct: 557 gctgcaccggcgacggcgacgacgagcc 584
>gb|CN138249.1|CN138249 OX1_62_D07.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_62_D07_A002 5', mRNA sequence
Length = 880
Score = 48.1 bits (24), Expect = 0.002
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1127 ccccggtacttgtccgcgaactcgaaca 1154
|||||||||||||||||||| |||||||
Sbjct: 454 ccccggtacttgtccgcgaaatcgaaca 427
>gb|CW046815.1|CW046815 104_284_10512366_115_30220 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10512366, DNA
sequence
Length = 324
Score = 46.1 bits (23), Expect = 0.008
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 308 gaagtaggcgaggaggcccatgagcggcgcgttgatgtacgtggtgggctc 358
|||||| ||||| | ||| | |||||||||||||||||| |||| ||||||
Sbjct: 114 gaagtacgcgagaacgccgacgagcggcgcgttgatgtaggtggcgggctc 64
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 419,407
Number of Sequences: 832831
Number of extensions: 419407
Number of successful extensions: 124582
Number of sequences better than 0.5: 94
Number of HSP's better than 0.5 without gapping: 93
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 124350
Number of HSP's gapped (non-prelim): 218
length of query: 1222
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1202
effective length of database: 474,703,049
effective search space: 570593064898
effective search space used: 570593064898
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)