BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2576652.2.5
(1033 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE356061.1|BE356061 DG1_122_B07.b1_A002 Dark Grown 1 (DG... 1005 0.0
gb|BE595210.1|BE595210 PI1_47_C10.b1_A002 Pathogen induced ... 999 0.0
gb|BE600096.1|BE600096 PI1_79_C07.b1_A002 Pathogen induced ... 868 0.0
gb|BE594899.1|BE594899 PI1_47_C10.g1_A002 Pathogen induced ... 833 0.0
gb|BE600178.1|BE600178 PI1_80_C05.b1_A002 Pathogen induced ... 807 0.0
gb|BE356104.1|BE356104 DG1_122_B07.g1_A002 Dark Grown 1 (DG... 801 0.0
gb|AI724233.1|AI724233 RHIZ1_7_H09.y2_A001 Rhizome1 (RHIZ1)... 767 0.0
gb|BM318248.1|BM318248 PI1_80_C05.g9_A002 Pathogen induced ... 720 0.0
gb|BM318165.1|BM318165 PI1_79_C07.g9_A002 Pathogen induced ... 517 e-145
gb|CL183302.1|CL183302 104_395_10898081_116_31918_305 Sorgh... 353 2e-095
gb|CW149327.1|CW149327 104_548_11142430_148_36291_091 Sorgh... 345 5e-093
gb|CW200083.1|CW200083 104_625_11183862_148_36859_023 Sorgh... 210 2e-052
gb|CW494063.1|CW494063 fsbb001f285c07f0 Sorghum methylation... 210 2e-052
gb|CL183301.1|CL183301 104_395_10898081_114_31917_305 Sorgh... 200 2e-049
gb|CW149326.1|CW149326 104_548_11142430_116_36292_091 Sorgh... 190 2e-046
gb|CW494064.1|CW494064 fsbb001f285c07k0 Sorghum methylation... 157 2e-036
gb|CL184654.1|CL184654 104_398_10898998_114_32367_093 Sorgh... 109 5e-022
gb|CW319574.1|CW319574 104_812_11474558_148_35891_059 Sorgh... 100 5e-019
gb|CW330531.1|CW330531 104_827_11480424_116_36014_088 Sorgh... 92 1e-016
gb|CW330532.1|CW330532 104_827_11480424_148_36013_088 Sorgh... 92 1e-016
gb|CF486594.1|CF486594 POL1_38_D04.g1_A002 Pollen Sorghum b... 90 5e-016
gb|CN129249.1|CN129249 RHOH1_34_G11.b3_A002 Acid- and alkal... 82 1e-013
gb|CN129333.1|CN129333 RHOH1_34_G11.g1_A002 Acid- and alkal... 82 1e-013
gb|BH245974.1|BH245974 pSB1549.2 S. bicolor BTx623 PstI-dig... 74 3e-011
gb|CW319573.1|CW319573 104_812_11474558_116_35887_059 Sorgh... 74 3e-011
gb|CD225359.1|CD225359 CCC1_39_B07.g1_A007 Callus culture/c... 54 3e-005
gb|CD234885.1|CD234885 SS1_18_D04.g1_A012 Salt-stressed see... 46 0.006
gb|DV162820.1|DV162820 P3-G6 Sorghum bicolor greenbug-respo... 42 0.10
gb|BZ694209.1|BZ694209 SP__Ba0044B21.f SP__Ba Sorghum propi... 40 0.40
gb|CW788332.1|CW788332 SP__Ba0044B21.f SP__Ba Sorghum propi... 40 0.40
gb|CF675626.1|CF675626 THAU2 Subtractive cDNA library from ... 40 0.40
gb|CF675675.1|CF675675 RUBISCO Subtractive cDNA library fro... 40 0.40
gb|DR831561.1|DR831561 MT14 Sorghum bicolor greenbug-respon... 40 0.40
gb|DV162795.1|DV162795 P1-M15 Sorghum bicolor greenbug-resp... 40 0.40
gb|DV162819.1|DV162819 P5-B11 Sorghum bicolor greenbug-resp... 40 0.40
gb|DV162819.2|DV162819 P5-B11 Sorghum bicolor greenbug-resp... 40 0.40
>gb|BE356061.1|BE356061 DG1_122_B07.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 600
Score = 1005 bits (507), Expect = 0.0
Identities = 558/575 (97%)
Strand = Plus / Minus
Query: 345 cgacgttatgaccagcaagcccagtgcgccaatcagcaggtacttaataaatggtttctc 404
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 600 cgacgttatgaccagcaagcccaatgcgccaatcagcaggtacttaataaatggtttctc 541
Query: 405 agtcatgataattgtaacccagccaacatatggaaggtagcccaccgcacgtcccataat 464
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 540 agtcatgataattgtaacccagccaacatatggaaggtagcccacggcacgtcccataat 481
Query: 465 gtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatccccaaaatt 524
||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 480 gtgatgttgctggagccaaagctgcccatgtgcatataatagtcggtcgtccccaaaatt 421
Query: 525 attgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggaccttaat 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 attgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggaccttaat 361
Query: 585 cactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatttctcctgt 644
||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 360 cacacggtgaacaattggaatttcacgaccatcgacattgaaaacaactatttctcccgt 301
Query: 645 gcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaatccaggctc 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaatccaggctc 241
Query: 705 catgctacccgagagcaccactacaactggtgactcgctccccgtgaaaactatcaaacc 764
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 240 catgctaccagagagaaccactacaactggtgactcgctccccgtgaaaactatcaaccc 181
Query: 765 cttccatatgattaatgcagaggtaacaatcataccgaggctgatgatctgcatgagcac 824
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 180 cttccatatgattaacgcagaggtaacaatcataccgaggctgatgatctgcgtgagcac 121
Query: 825 ttggcggatctgcatggagcggatcgactccatcgtgtctccgacgaaccccatatcgct 884
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 120 ttggcggatctgcatcgagcggatcgactccatcgtgtctccgacgaaccccatctcgct 61
Query: 885 ccctctccctcggctttccggcggcgaaatcacga 919
||||||||||||||| |||||||||||||||||||
Sbjct: 60 ccctctccctcggctctccggcggcgaaatcacga 26
>gb|BE595210.1|BE595210 PI1_47_C10.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 580
Score = 999 bits (504), Expect = 0.0
Identities = 555/572 (97%)
Strand = Plus / Minus
Query: 347 acgttatgaccagcaagcccagtgcgccaatcagcaggtacttaataaatggtttctcag 406
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 580 acgttatgaccagcaagcccaatgcgccaatcagcaggtacttaataaatggtttctcag 521
Query: 407 tcatgataattgtaacccagccaacatatggaaggtagcccaccgcacgtcccataatgt 466
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 520 tcatgataattgtaacccagccaacatatggaaggtagcccacggcacgtcccataatgt 461
Query: 467 ggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatccccaaaattat 526
| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 460 gatgttgctggagccaaagctgcccatgtgcatataatagtcggtcgtccccaaaattat 401
Query: 527 tgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggaccttaatca 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggaccttaatca 341
Query: 587 ctcggtggacaattggaatctcacgaccatcgacattgaaaacaactatttctcctgtgc 646
| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 340 cacggtgaacaattggaatttcacgaccatcgacattgaaaacaactatttctcccgtgc 281
Query: 647 gaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaatccaggctcca 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaatccaggctcca 221
Query: 707 tgctacccgagagcaccactacaactggtgactcgctccccgtgaaaactatcaaaccct 766
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 220 tgctaccagagagaaccactacaactggtgactcgctccccgtgaaaactatcaacccct 161
Query: 767 tccatatgattaatgcagaggtaacaatcataccgaggctgatgatctgcatgagcactt 826
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 160 tccatatgattaacgcagaggtaacaatcataccgaggctgatgatctgcgtgagcactt 101
Query: 827 ggcggatctgcatggagcggatcgactccatcgtgtctccgacgaaccccatatcgctcc 886
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 100 ggcggatctgcatcgagcggatcgactccatcgtgtctccgacgaaccccatctcgctcc 41
Query: 887 ctctccctcggctttccggcggcgaaatcacg 918
||||||||||||| ||||||||||||||||||
Sbjct: 40 ctctccctcggctctccggcggcgaaatcacg 9
>gb|BE600096.1|BE600096 PI1_79_C07.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 537
Score = 868 bits (438), Expect = 0.0
Identities = 486/502 (96%)
Strand = Plus / Minus
Query: 418 gtaacccagccaacatatggaaggtagcccaccgcacgtcccataatgtggtgttgctgg 477
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 533 gtaacccagccaacatatggaaggtagcccacggcacgtcccataatgtgatgttgctgg 474
Query: 478 agccaaagctggccatgtgcatataatagtcggtcatccccaaaattattgtcacctttg 537
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 473 agccaaagctgcccatgtgcatataatagtcggtcgtccccaaaattattgtcacctttg 414
Query: 538 gtgaggatgtccacttctgcagtgtcctgacgttcatggaccttaatcactcggtggaca 597
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 413 gtgaggatgtccacttctgcagtgtcctgacgttcatggaccttaatcacacggtgaaca 354
Query: 598 attggaatctcacgaccatcgacattgaaaacaactatttctcctgtgcgaataggatct 657
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 353 attggaatttcacgaccatcgacattgaaaacaactatttctcccgtgcgaataggatct 294
Query: 658 ttgctcatatgcaaaaacaggatatcaccccttttaaatccaggctccatgctacccgag 717
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 293 ttgctcatatgcaaaaacaggatatcaccccttttaaatccaggctccatgctaccagag 234
Query: 718 agcaccactacaactggtgactcgctccccgtgaaaactatcaaacccttccatatgatt 777
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 233 agaaccactacaactggtgactcgctccccgtgaaaactatcaaccccttccatatgatt 174
Query: 778 aatgcagaggtaacaatcataccgaggctgatgatctgcatgagcacttggcggatctgc 837
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 173 aacgcagaggtaacaatcataccgaggctgatgatctgcgtgagcacttggcggatctgc 114
Query: 838 atggagcggatcgactccatcgtgtctccgacgaaccccatatcgctccctctccctcgg 897
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 113 atcgagcggatcgactccatcgtgtctccgacgaaccccatctcgctccctctccctcgg 54
Query: 898 ctttccggcggcgaaatcacga 919
|| |||||||||||||||||||
Sbjct: 53 ctctccggcggcgaaatcacga 32
>gb|BE594899.1|BE594899 PI1_47_C10.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 476
Score = 833 bits (420), Expect = 0.0
Identities = 462/476 (97%)
Strand = Plus / Minus
Query: 386 acttaataaatggtttctcagtcatgataattgtaacccagccaacatatggaaggtagc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 acttaataaatggtttctcagtcatgataattgtaacccagccaacatatggaaggtagc 417
Query: 446 ccaccgcacgtcccataatgtggtgttgctggagccaaagctggccatgtgcatataata 505
|||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 416 ccacggcacgtcccataatgtgatgttgctggagccaaagctgcccatgtgcatataata 357
Query: 506 gtcggtcatccccaaaattattgtcacctttggtgaggatgtccacttctgcagtgtcct 565
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gtcggtcgtccccaaaattattgtcacctttggtgaggatgtccacttctgcagtgtcct 297
Query: 566 gacgttcatggaccttaatcactcggtggacaattggaatctcacgaccatcgacattga 625
|||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct: 296 gacgttcatggaccttaatcacacggtgaacaattggaatttcacgaccatcgacattga 237
Query: 626 aaacaactatttctcctgtgcgaataggatctttgctcatatgcaaaaacaggatatcac 685
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 aaacaactatttctcccgtgcgaataggatctttgctcatatgcaaaaacaggatatcac 177
Query: 686 cccttttaaatccaggctccatgctacccgagagcaccactacaactggtgactcgctcc 745
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 176 cccttttaaatccaggctccatgctaccagagagaaccactacaactggtgactcgctcc 117
Query: 746 ccgtgaaaactatcaaacccttccatatgattaatgcagaggtaacaatcataccgaggc 805
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 116 ccgtgaaaactatcaaccccttccatatgattaacgcagaggtaacaatcataccgaggc 57
Query: 806 tgatgatctgcatgagcacttggcggatctgcatggagcggatcgactccatcgtg 861
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 56 tgatgatctgcgtgagcacttggcggatctgcatcgagcggatcgactccatcgtg 1
>gb|BE600178.1|BE600178 PI1_80_C05.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 514
Score = 807 bits (407), Expect = 0.0
Identities = 464/483 (96%)
Strand = Plus / Minus
Query: 437 gaaggtagcccaccgcacgtcccataatgtggtgttgctggagccaaagctggccatgtg 496
||||||||||| | ||||||||||||||||| |||||||||||||| ||||| |||||||
Sbjct: 514 gaaggtagcccccggcacgtcccataatgtgatgttgctggagccagagctgcccatgtg 455
Query: 497 catataatagtcggtcatccccaaaattattgtcacctttggtgaggatgtccacttctg 556
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 454 catataatagtcggtcgtccccaaaattattgtcacctttggtgaggatgtccacttgtg 395
Query: 557 cagtgtcctgacgttcatggaccttaatcactcggtggacaattggaatctcacgaccat 616
||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||
Sbjct: 394 cagtgtcctgacgttcatggaccttaatcacacggtgaacaattggaatttcacgaccat 335
Query: 617 cgacattgaaaacaactatttctcctgtgcgaataggatctttgctcatatgcaaaaaca 676
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 334 cgacattgaaaacaactatttctcccgtgcgaataggatctttgctcatatgcaaaaaca 275
Query: 677 ggatatcaccccttttaaatccaggctccatgctacccgagagcaccactacaactggtg 736
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 274 ggatatcaccccttttaaatccaggctccatgctaccagagagaaccactacaactggtg 215
Query: 737 actcgctccccgtgaaaactatcaaacccttccatatgattaatgcagaggtaacaatca 796
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 214 actcgctccccgtgaaaactatcaaccccttccatatgattaacgcagaggtaacaatca 155
Query: 797 taccgaggctgatgatctgcatgagcacttggcggatctgcatggagcggatcgactcca 856
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 154 taccgaggctgatgatctgcgtgagcacttggcggatctgcatcgagcggatcgactcca 95
Query: 857 tcgtgtctccgacgaaccccatatcgctccctctccctcggctttccggcggcgaaatca 916
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 94 tcgtgtctccgacgaaccccatctcgctccctctccctcggctctccggcggcgaaatca 35
Query: 917 cga 919
|||
Sbjct: 34 cga 32
>gb|BE356104.1|BE356104 DG1_122_B07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 460
Score = 801 bits (404), Expect = 0.0
Identities = 443/456 (97%)
Strand = Plus / Minus
Query: 384 gtacttaataaatggtttctcagtcatgataattgtaacccagccaacatatggaaggta 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gtacttaataaatggtttctcagtcatgataattgtaacccagccaacatatggaaggta 401
Query: 444 gcccaccgcacgtcccataatgtggtgttgctggagccaaagctggccatgtgcatataa 503
|||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 400 gcccacggcacgtcccataatgtgatgttgctggagccaaagctgcccatgtgcatataa 341
Query: 504 tagtcggtcatccccaaaattattgtcacctttggtgaggatgtccacttctgcagtgtc 563
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tagtcggtcgtccccaaaattattgtcacctttggtgaggatgtccacttctgcagtgtc 281
Query: 564 ctgacgttcatggaccttaatcactcggtggacaattggaatctcacgaccatcgacatt 623
|||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct: 280 ctgacgttcatggaccttaatcacacggtgaacaattggaatttcacgaccatcgacatt 221
Query: 624 gaaaacaactatttctcctgtgcgaataggatctttgctcatatgcaaaaacaggatatc 683
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 gaaaacaactatttctcccgtgcgaataggatctttgctcatatgcaaaaacaggatatc 161
Query: 684 accccttttaaatccaggctccatgctacccgagagcaccactacaactggtgactcgct 743
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 160 accccttttaaatccaggctccatgctaccagagagaaccactacaactggtgactcgct 101
Query: 744 ccccgtgaaaactatcaaacccttccatatgattaatgcagaggtaacaatcataccgag 803
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 100 ccccgtgaaaactatcaaccccttccatatgattaacgcagaggtaacaatcataccgag 41
Query: 804 gctgatgatctgcatgagcacttggcggatctgcat 839
||||||||||||| ||||||||||||||||||||||
Sbjct: 40 gctgatgatctgcgtgagcacttggcggatctgcat 5
>gb|AI724233.1|AI724233 RHIZ1_7_H09.y2_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 522
Score = 767 bits (387), Expect = 0.0
Identities = 478/507 (94%), Gaps = 1/507 (0%)
Strand = Plus / Minus
Query: 171 aaccgactatccgatcaatgggcaggtgccctcgcagtagataaagaaatcttctcgttt 230
|||||||||||| || | ||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 513 aaccgactatccaattagtgggcaggtgccctcacagtagataaagaattcttctcgttt 454
Query: 231 gatacatggcgcaacatagcggcatctctcaaacgccacaaagccagtgatctctgctgt 290
||||||||| | |||| | |||| ||||| || ||| | |||||| ||| |||||||||
Sbjct: 453 gatacatggtggaacagaacggcttctcttaa-cgctgcgaagccactgacctctgctgt 395
Query: 291 tgcgccataagagcaaaatctacatggccctgaagtttgacatcactaatctttcgacgt 350
||| |||||||||||||||||||||||| |||||||||| |||| |||||||||||||||
Sbjct: 394 tgcaccataagagcaaaatctacatggcactgaagtttggcatctctaatctttcgacgt 335
Query: 351 tatgaccagcaagcccagtgcgccaatcagcaggtacttaataaatggtttctcagtcat 410
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tatgaccagcaagcccaatgcgccaatcagcaggtacttaataaatggtttctcagtcat 275
Query: 411 gataattgtaacccagccaacatatggaaggtagcccaccgcacgtcccataatgtggtg 470
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 274 gataattgtaacccagccaacatatggaaggtagcccacggcacgtcccataatgtgatg 215
Query: 471 ttgctggagccaaagctggccatgtgcatataatagtcggtcatccccaaaattattgtc 530
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 ttgctggagccaaagctgcccatgtgcatataatagtcggtcatccccaaaattattgtc 155
Query: 531 acctttggtgaggatgtccacttctgcagtgtcctgacgttcatggaccttaatcactcg 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 154 acctttggtgaggatgtccacttctgcagtgtcctgacgttcatggaccttaatcacacg 95
Query: 591 gtggacaattggaatctcacgaccatcgacattgaaaacaactatttctcctgtgcgaat 650
||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 94 gtgaacaattggaatttcacgaccatcgacattgaaaacaactatttctcccgtgcgaat 35
Query: 651 aggatctttgctcatatgcaaaaacag 677
|||||||||||||||||||||||||||
Sbjct: 34 aggatctttgctcatatgcaaaaacag 8
>gb|BM318248.1|BM318248 PI1_80_C05.g9_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 625
Score = 720 bits (363), Expect = 0.0
Identities = 491/530 (92%), Gaps = 4/530 (0%)
Strand = Plus / Minus
Query: 67 ttcctgcaagactgcaatgacgagttatcttcatcgaatagaacc--caacgactggttc 124
|||||||||| ||||||||| ||||||||||||||||||| |||| | ||||||| |||
Sbjct: 532 ttcctgcaaggctgcaatgaagagttatcttcatcgaatataaccaccgacgactgattc 473
Query: 125 aactcattagctaggccacaactacaaaa-gatggatgctggattagaaccgactatccg 183
||||||||||||| | ||||||||||||| |||| ||||||||| ||||||||||||||
Sbjct: 472 aactcattagctatggcacaactacaaaaagatgaatgctggatgagaaccgactatcca 413
Query: 184 atcaatgggcaggtgccctcgcagtagataaagaaatcttctcgtttgatacatggcgca 243
|| | ||||||||||||||| |||||||||||||| |||||||||||||||||||| | |
Sbjct: 412 attagtgggcaggtgccctcacagtagataaagaattcttctcgtttgatacatggtgga 353
Query: 244 acatagcggcatctctcaaacgccacaaagccagtgatctctgctgttgcgccataagag 303
||| | |||| ||||| || ||| | |||||| ||| |||||||||||| |||||||||
Sbjct: 352 acagaacggcttctcttaa-cgctgcgaagccactgacctctgctgttgcaccataagag 294
Query: 304 caaaatctacatggccctgaagtttgacatcactaatctttcgacgttatgaccagcaag 363
||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 293 caaaatctacatggcactgaagtttggcatctctaatctttcgacgttatgaccagcaag 234
Query: 364 cccagtgcgccaatcagcaggtacttaataaatggtttctcagtcatgataattgtaacc 423
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 cccaatgcgccaatcagcaggtacttaataaatggtttctcagtcatgataattgtaacc 174
Query: 424 cagccaacatatggaaggtagcccaccgcacgtcccataatgtggtgttgctggagccaa 483
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 173 cagccaacatatggaaggtagcccacggcacgtcccataatgtgatgttgctggagccaa 114
Query: 484 agctggccatgtgcatataatagtcggtcatccccaaaattattgtcacctttggtgagg 543
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 113 agctgcccatgtgcatataatagtcggtcgtccccaaaattattgtcacctttggtgagg 54
Query: 544 atgtccacttctgcagtgtcctgacgttcatggaccttaatcactcggtg 593
|||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 53 atgtccacttctgcagtgtcctgacgttcatggaccttaatcacacggtg 4
>gb|BM318165.1|BM318165 PI1_79_C07.g9_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 511
Score = 517 bits (261), Expect = e-145
Identities = 380/416 (91%), Gaps = 4/416 (0%)
Strand = Plus / Minus
Query: 67 ttcctgcaagactgcaatgacgagttatcttcatcgaatagaacc--caacgactggttc 124
|||||||||| ||||||||| ||||||||||||||||||| |||| | ||||||| |||
Sbjct: 415 ttcctgcaaggctgcaatgaagagttatcttcatcgaatataaccaccgacgactgattc 356
Query: 125 aactcattagctaggccacaactacaaaa-gatggatgctggattagaaccgactatccg 183
||||||||||||| | ||||||||||||| |||| ||||||||| ||||||||||||||
Sbjct: 355 aactcattagctatggcacaactacaaaaagatgaatgctggatgagaaccgactatcca 296
Query: 184 atcaatgggcaggtgccctcgcagtagataaagaaatcttctcgtttgatacatggcgca 243
|| | ||||||||||||||| |||||||||||||| |||||||||||||||||||| | |
Sbjct: 295 attagtgggcaggtgccctcacagtagataaagaattcttctcgtttgatacatggtgga 236
Query: 244 acatagcggcatctctcaaacgccacaaagccagtgatctctgctgttgcgccataagag 303
||| | |||| ||||| || ||| | |||||| ||| |||||||||||| |||||||||
Sbjct: 235 acagaacggcttctcttaa-cgctgcgaagccactgacctctgctgttgcaccataagag 177
Query: 304 caaaatctacatggccctgaagtttgacatcactaatctttcgacgttatgaccagcaag 363
||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 176 caaaatctacatggcactgaagtttggcatctctaatctttcgacgttatgaccagcaag 117
Query: 364 cccagtgcgccaatcagcaggtacttaataaatggtttctcagtcatgataattgtaacc 423
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 cccaatgcgccaatcagcaggtacttaataaatggtttctcagtcatgataattgtaacc 57
Query: 424 cagccaacatatggaaggtagcccaccgcacgtcccataatgtggtgttgctggag 479
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 56 cagccaacatatggaaggtagcccacggcacgtcccataatgtgatgttgctggag 1
>gb|CL183302.1|CL183302 104_395_10898081_116_31918_305 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10898081, DNA
sequence
Length = 749
Score = 353 bits (178), Expect = 2e-095
Identities = 291/325 (89%), Gaps = 4/325 (1%)
Strand = Plus / Minus
Query: 67 ttcctgcaagactgcaatgacgagttatcttcatcgaatagaacc--caacgactggttc 124
|||||||||| ||||||||| ||||||||||||||||||| |||| | ||||||| |||
Sbjct: 364 ttcctgcaaggctgcaatgaagagttatcttcatcgaatataaccaccgacgactgattc 305
Query: 125 aactcattagctaggccacaactacaaaa-gatggatgctggattagaaccgactatccg 183
||||||||||||| | ||||||||||||| |||| ||||||||| ||||||||||||||
Sbjct: 304 aactcattagctatggcacaactacaaaaagatgaatgctggatgagaaccgactatcca 245
Query: 184 atcaatgggcaggtgccctcgcagtagataaagaaatcttctcgtttgatacatggcgca 243
|| | ||||||||||||||| |||||||||||||| |||||||||||||||||||| | |
Sbjct: 244 attagtgggcaggtgccctcacagtagataaagaattcttctcgtttgatacatggtgga 185
Query: 244 acatagcggcatctctcaaacgccacaaagccagtgatctctgctgttgcgccataagag 303
||| | |||| ||||| || ||| | |||||| ||| |||||||||||| |||||||||
Sbjct: 184 acagaacggcttctcttaa-cgctgcgaagccactgacctctgctgttgcaccataagag 126
Query: 304 caaaatctacatggccctgaagtttgacatcactaatctttcgacgttatgaccagcaag 363
||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 125 caaaatctacatggcactgaagtttggcatctctaatctttcgacgttatgaccagcaag 66
Query: 364 cccagtgcgccaatcagcaggtact 388
|||| ||||||||||||||||||||
Sbjct: 65 cccaatgcgccaatcagcaggtact 41
>gb|CW149327.1|CW149327 104_548_11142430_148_36291_091 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11142430, DNA
sequence
Length = 545
Score = 345 bits (174), Expect = 5e-093
Identities = 290/325 (89%), Gaps = 4/325 (1%)
Strand = Plus / Minus
Query: 67 ttcctgcaagactgcaatgacgagttatcttcatcgaatagaacc--caacgactggttc 124
|||||||||| ||||||||| ||||||||||||||||||| |||| | ||||||| |||
Sbjct: 368 ttcctgcaaggctgcaatgaagagttatcttcatcgaatataaccaccgacgactgattc 309
Query: 125 aactcattagctaggccacaactacaaaa-gatggatgctggattagaaccgactatccg 183
||||||||||||| | ||||||||||||| |||| ||||||||| ||||||||||||||
Sbjct: 308 aactcattagctatggcacaactacaaaaagatgaatgctggatgagaaccgactatcca 249
Query: 184 atcaatgggcaggtgccctcgcagtagataaagaaatcttctcgtttgatacatggcgca 243
|| | ||||||||||||||| |||||||||||||| |||||||||||||||||||| | |
Sbjct: 248 attagtgggcaggtgccctcacagtagataaagaattcttctcgtttgatacatggtgga 189
Query: 244 acatagcggcatctctcaaacgccacaaagccagtgatctctgctgttgcgccataagag 303
||| | |||| ||||| || ||| | |||||| ||| |||||||||||| |||||||||
Sbjct: 188 acagaacggcttctcttaa-cgctgcgaagccactgacctctgctgttgcaccataagag 130
Query: 304 caaaatctacatggccctgaagtttgacatcactaatctttcgacgttatgaccagcaag 363
||||||||||||||| |||||||||| |||| ||||||||| ||||||||||||||||||
Sbjct: 129 caaaatctacatggcactgaagtttggcatctctaatctttggacgttatgaccagcaag 70
Query: 364 cccagtgcgccaatcagcaggtact 388
|||| ||||||||||||||||||||
Sbjct: 69 cccaatgcgccaatcagcaggtact 45
>gb|CW200083.1|CW200083 104_625_11183862_148_36859_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11183862, DNA
sequence
Length = 667
Score = 210 bits (106), Expect = 2e-052
Identities = 118/122 (96%)
Strand = Plus / Plus
Query: 798 accgaggctgatgatctgcatgagcacttggcggatctgcatggagcggatcgactccat 857
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 54 accgaggctgatgatctgcgtgagcacttggcggatctgcatcgagcggatcgactccat 113
Query: 858 cgtgtctccgacgaaccccatatcgctccctctccctcggctttccggcggcgaaatcac 917
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 114 cgtgtctccgacgaaccccatctcgctccctctccctcggctctccggcggcgaaatcac 173
Query: 918 ga 919
||
Sbjct: 174 ga 175
>gb|CW494063.1|CW494063 fsbb001f285c07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f285c07, DNA
sequence
Length = 550
Score = 210 bits (106), Expect = 2e-052
Identities = 118/122 (96%)
Strand = Plus / Minus
Query: 798 accgaggctgatgatctgcatgagcacttggcggatctgcatggagcggatcgactccat 857
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 497 accgaggctgatgatctgcgtgagcacttggcggatctgcatcgagcggatcgactccat 438
Query: 858 cgtgtctccgacgaaccccatatcgctccctctccctcggctttccggcggcgaaatcac 917
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 437 cgtgtctccgacgaaccccatctcgctccctctccctcggctctccggcggcgaaatcac 378
Query: 918 ga 919
||
Sbjct: 377 ga 376
>gb|CL183301.1|CL183301 104_395_10898081_114_31917_305 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10898081, DNA
sequence
Length = 774
Score = 200 bits (101), Expect = 2e-049
Identities = 159/176 (90%), Gaps = 3/176 (1%)
Strand = Plus / Plus
Query: 67 ttcctgcaagactgcaatgacgagttatcttcatcgaatagaacc--caacgactggttc 124
|||||||||| ||||||||| ||||||||||||||||||| |||| | ||||||| |||
Sbjct: 577 ttcctgcaaggctgcaatgaagagttatcttcatcgaatataaccaccgacgactgattc 636
Query: 125 aactcattagctaggccacaactacaaaa-gatggatgctggattagaaccgactatccg 183
||||||||||||| | ||||||||||||| |||| ||||||||| ||||||||||||||
Sbjct: 637 aactcattagctatggcacaactacaaaaagatgaatgctggatgagaaccgactatcca 696
Query: 184 atcaatgggcaggtgccctcgcagtagataaagaaatcttctcgtttgatacatgg 239
|| | ||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 697 attagtgggcaggtgccctcacagtagataaagaattcttctcgtttgatacatgg 752
>gb|CW149326.1|CW149326 104_548_11142430_116_36292_091 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11142430, DNA
sequence
Length = 654
Score = 190 bits (96), Expect = 2e-046
Identities = 157/175 (89%), Gaps = 3/175 (1%)
Strand = Plus / Plus
Query: 67 ttcctgcaagactgcaatgacgagttatcttcatcgaatagaacc--caacgactggttc 124
|||||||||| ||||||||| ||||||||||||||||||| |||| | ||||||| |||
Sbjct: 480 ttcctgcaaggctgcaatgaagagttatcttcatcgaatataaccaccgacgactgattc 539
Query: 125 aactcattagctaggccacaactac-aaaagatggatgctggattagaaccgactatccg 183
||||||||||||| | ||||||||| |||||||| ||||||||| ||||| ||||||||
Sbjct: 540 aactcattagctatggcacaactactaaaagatgaatgctggatgagaactgactatcca 599
Query: 184 atcaatgggcaggtgccctcgcagtagataaagaaatcttctcgtttgatacatg 238
|| | ||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 600 attagtgggcaggtgccctcacagtagataaagaattcttctcgtttgatacatg 654
>gb|CW494064.1|CW494064 fsbb001f285c07k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f285c07, DNA
sequence
Length = 576
Score = 157 bits (79), Expect = 2e-036
Identities = 88/91 (96%)
Strand = Plus / Plus
Query: 798 accgaggctgatgatctgcatgagcacttggcggatctgcatggagcggatcgactccat 857
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 486 accgaggctgatgatctgcgtgagcacttggcggatctgcatcgagcggatcgactccat 545
Query: 858 cgtgtctccgacgaaccccatatcgctccct 888
||||||||||||||||||||| |||||||||
Sbjct: 546 cgtgtctccgacgaaccccatctcgctccct 576
>gb|CL184654.1|CL184654 104_398_10898998_114_32367_093 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10898998, DNA
sequence
Length = 618
Score = 109 bits (55), Expect = 5e-022
Identities = 97/111 (87%)
Strand = Plus / Plus
Query: 690 tttaaatccaggctccatgctacccgagagcaccactacaactggtgactcgctccccgt 749
|||||||||||||||||||||||| || || |||||||| || || ||||||||||| ||
Sbjct: 3 tttaaatccaggctccatgctaccagaaagaaccactaccaccggggactcgctccctgt 62
Query: 750 gaaaactatcaaacccttccatatgattaatgcagaggtaacaatcatacc 800
| ||||||||| |||||||||||||| || || ||||| |||||||||||
Sbjct: 63 cacaactatcaatcccttccatatgatcaacgccgaggtcacaatcatacc 113
>gb|CW319574.1|CW319574 104_812_11474558_148_35891_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11474558, DNA
sequence
Length = 681
Score = 99.6 bits (50), Expect = 5e-019
Identities = 53/54 (98%)
Strand = Plus / Minus
Query: 387 cttaataaatggtttctcagtcatgataattgtaacccagccaacatatggaag 440
|||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 54 cttaataaatggcttctcagtcatgataattgtaacccagccaacatatggaag 1
Score = 73.8 bits (37), Expect = 3e-011
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 340 tctttcgacgttatgaccagcaagcccagtgcgccaatcagcaggtact 388
||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 339 tctttcgttgttatgaccagcaagcccagtgcaccaatcagcaggtact 291
>gb|CW330531.1|CW330531 104_827_11480424_116_36014_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480424, DNA
sequence
Length = 699
Score = 91.7 bits (46), Expect = 1e-016
Identities = 73/82 (89%)
Strand = Plus / Minus
Query: 797 taccgaggctgatgatctgcatgagcacttggcggatctgcatggagcggatcgactcca 856
|||||||||||||||||||| |||||| ||||||| ||| || ||||||||||||||||
Sbjct: 179 taccgaggctgatgatctgcgagagcacgtggcggacctgaatcgagcggatcgactcca 120
Query: 857 tcgtgtctccgacgaaccccat 878
|||||| |||||||| |||||
Sbjct: 119 ccgtgtcgccgacgaaacccat 98
>gb|CW330532.1|CW330532 104_827_11480424_148_36013_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480424, DNA
sequence
Length = 694
Score = 91.7 bits (46), Expect = 1e-016
Identities = 73/82 (89%)
Strand = Plus / Plus
Query: 797 taccgaggctgatgatctgcatgagcacttggcggatctgcatggagcggatcgactcca 856
|||||||||||||||||||| |||||| ||||||| ||| || ||||||||||||||||
Sbjct: 519 taccgaggctgatgatctgcgagagcacgtggcggacctgaatcgagcggatcgactcca 578
Query: 857 tcgtgtctccgacgaaccccat 878
|||||| |||||||| |||||
Sbjct: 579 ccgtgtcgccgacgaaacccat 600
>gb|CF486594.1|CF486594 POL1_38_D04.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_38_D04_A002 5', mRNA sequence
Length = 716
Score = 89.7 bits (45), Expect = 5e-016
Identities = 135/165 (81%)
Strand = Plus / Minus
Query: 523 ttattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggacctta 582
|||||||||||||| ||||||| || | |||||| | | || ||||| || |||||
Sbjct: 285 ttattgtcaccttttgtgaggacatcaaattctgccataccatggcgttcgtgaaccttg 226
Query: 583 atcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatttctcct 642
||||| || |||||||||||||| ||||| || |||| ||||||||||||||| |||||
Sbjct: 225 atcacacgatggacaattggaatatcacggccctcgatattgaaaacaactatgtctccc 166
Query: 643 gtgcgaataggatctttgctcatatgcaaaaacaggatatcaccc 687
||||| | ||| || || |||| || ||||||||||||||||||
Sbjct: 165 gtgcggacagggtccttattcatgtgtaaaaacaggatatcaccc 121
Score = 67.9 bits (34), Expect = 2e-009
Identities = 118/146 (80%)
Strand = Plus / Minus
Query: 355 accagcaagcccagtgcgccaatcagcaggtacttaataaatggtttctcagtcatgata 414
||||||| |||||||| ||||| ||||| ||||| | | ||||||||| ||||||
Sbjct: 459 accagcagccccagtgcaccaattagcagatacttgaggactggtttctccgtcatggcg 400
Query: 415 attgtaacccagccaacatatggaaggtagcccaccgcacgtcccataatgtggtgttgc 474
||||||| ||| ||| |||| || || ||||| || || ||||| |||||||| ||| ||
Sbjct: 399 attgtaagccacccagcataaggcagatagccaacagcccgtccaataatgtgctgtcgc 340
Query: 475 tggagccaaagctggccatgtgcata 500
|| ||||||||||| |||| ||||||
Sbjct: 339 tgaagccaaagctgcccatttgcata 314
>gb|CN129249.1|CN129249 RHOH1_34_G11.b3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_34_G11_A002 3', mRNA sequence
Length = 814
Score = 81.8 bits (41), Expect = 1e-013
Identities = 134/165 (81%)
Strand = Plus / Minus
Query: 523 ttattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggacctta 582
|||||||||||||| ||||||| || | |||||| | | || ||||| || |||||
Sbjct: 440 ttattgtcaccttttgtgaggacatcaaattctgccataccatggcgttcgtgaaccttg 381
Query: 583 atcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatttctcct 642
||||| || |||||||||||||| ||||| || || | ||||||||||||||| |||||
Sbjct: 380 atcacacgatggacaattggaatatcacggccctcaatattgaaaacaactatgtctccc 321
Query: 643 gtgcgaataggatctttgctcatatgcaaaaacaggatatcaccc 687
||||| | ||| || || |||| || ||||||||||||||||||
Sbjct: 320 gtgcggacagggtccttattcatgtgtaaaaacaggatatcaccc 276
Score = 65.9 bits (33), Expect = 7e-009
Identities = 111/137 (81%)
Strand = Plus / Minus
Query: 364 cccagtgcgccaatcagcaggtacttaataaatggtttctcagtcatgataattgtaacc 423
|||||||| ||||| ||||| ||||| | | ||||||||| |||||| ||||||| |
Sbjct: 605 cccagtgcaccaattagcagatacttgaggactggtttctccgtcatggcgattgtaagc 546
Query: 424 cagccaacatatggaaggtagcccaccgcacgtcccataatgtggtgttgctggagccaa 483
|| ||| |||| || || ||||| || || ||||| |||||||| ||| |||| ||||||
Sbjct: 545 cacccagcataaggcagatagccaacagcccgtccaataatgtgctgtcgctgaagccaa 486
Query: 484 agctggccatgtgcata 500
||||| |||| ||||||
Sbjct: 485 agctgcccatttgcata 469
>gb|CN129333.1|CN129333 RHOH1_34_G11.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_34_G11_A002 5', mRNA sequence
Length = 825
Score = 81.8 bits (41), Expect = 1e-013
Identities = 134/165 (81%)
Strand = Plus / Minus
Query: 523 ttattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggacctta 582
|||||||||||||| ||||||| || | |||||| | | || ||||| || |||||
Sbjct: 772 ttattgtcaccttttgtgaggacatcaaattctgccataccatggcgttcgtgaaccttg 713
Query: 583 atcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatttctcct 642
||||| || |||||||||||||| ||||| || || | ||||||||||||||| |||||
Sbjct: 712 atcacacgatggacaattggaatatcacggccctcaatattgaaaacaactatgtctccc 653
Query: 643 gtgcgaataggatctttgctcatatgcaaaaacaggatatcaccc 687
||||| | ||| || || |||| || ||||||||||||||||||
Sbjct: 652 gtgcggacagggtccttattcatgtgtaaaaacaggatatcaccc 608
Score = 54.0 bits (27), Expect = 3e-005
Identities = 117/147 (79%)
Strand = Plus / Minus
Query: 693 aaatccaggctccatgctacccgagagcaccactacaactggtgactcgctccccgtgaa 752
|||||||||||||||||| | || || ||||| |||||||||||||| ||||| || |
Sbjct: 187 aaatccaggctccatgctttcagatagaaccaccacaactggtgactcactccctgttac 128
Query: 753 aactatcaaacccttccatatgattaatgcagaggtaacaatcataccgaggctgatgat 812
| ||||| || ||||||||||| ||||| || || | ||||| || ||| |||||||
Sbjct: 127 gataatcaatcctttccatatgatcaatgccgaagtcaggatcatccctagggtgatgat 68
Query: 813 ctgcatgagcacttggcggatctgcat 839
|| |||||| |||||||||||||
Sbjct: 67 ttgggcgagcacggggcggatctgcat 41
>gb|BH245974.1|BH245974 pSB1549.2 S. bicolor BTx623 PstI-digested total genomic DNA library
Sorghum bicolor genomic clone pSB1549, DNA sequence
Length = 543
Score = 73.8 bits (37), Expect = 3e-011
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 340 tctttcgacgttatgaccagcaagcccagtgcgccaatcagcaggtact 388
||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 53 tctttcgttgttatgaccagcaagcccagtgcaccaatcagcaggtact 5
>gb|CW319573.1|CW319573 104_812_11474558_116_35887_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11474558, DNA
sequence
Length = 682
Score = 73.8 bits (37), Expect = 3e-011
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 340 tctttcgacgttatgaccagcaagcccagtgcgccaatcagcaggtact 388
||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 380 tctttcgttgttatgaccagcaagcccagtgcaccaatcagcaggtact 428
>gb|CD225359.1|CD225359 CCC1_39_B07.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_39_B07_A007 5', mRNA sequence
Length = 535
Score = 54.0 bits (27), Expect = 3e-005
Identities = 117/147 (79%)
Strand = Plus / Minus
Query: 693 aaatccaggctccatgctacccgagagcaccactacaactggtgactcgctccccgtgaa 752
|||||||||||||||||| | || || ||||| |||||||||||||| ||||| || |
Sbjct: 185 aaatccaggctccatgctttcagatagaaccaccacaactggtgactcactccctgttac 126
Query: 753 aactatcaaacccttccatatgattaatgcagaggtaacaatcataccgaggctgatgat 812
| ||||| || ||||||||||| ||||| || || | ||||| || ||| |||||||
Sbjct: 125 gataatcaatcctttccatatgatcaatgccgaagtcaggatcatccctagggtgatgat 66
Query: 813 ctgcatgagcacttggcggatctgcat 839
|| |||||| |||||||||||||
Sbjct: 65 ttgggcgagcacggggcggatctgcat 39
>gb|CD234885.1|CD234885 SS1_18_D04.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_18_D04_A012 5', mRNA sequence
Length = 270
Score = 46.1 bits (23), Expect = 0.006
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 693 aaatccaggctccatgctacccgagagcaccactacaactggtgact 739
|||||||||||||||||| | || || ||||| |||||||||||||
Sbjct: 47 aaatccaggctccatgctttcagatagaaccaccacaactggtgact 1
>gb|DV162820.1|DV162820 P3-G6 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 223
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1013 cgtacctgcccgggcggccgc 1033
|||||||||||||||||||||
Sbjct: 99 cgtacctgcccgggcggccgc 119
>gb|BZ694209.1|BZ694209 SP__Ba0044B21.f SP__Ba Sorghum propinquum genomic clone
SP__Ba0044B21 5', DNA sequence
Length = 602
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 390 aataaatggtttctcagtca 409
||||||||||||||||||||
Sbjct: 250 aataaatggtttctcagtca 231
>gb|CW788332.1|CW788332 SP__Ba0044B21.f SP__Ba Sorghum propinquum genomic clone
SP__Ba0044B21 5', DNA sequence
Length = 589
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 390 aataaatggtttctcagtca 409
||||||||||||||||||||
Sbjct: 257 aataaatggtttctcagtca 238
>gb|CF675626.1|CF675626 THAU2 Subtractive cDNA library from sorghum infested by greenbug
aphids Sorghum bicolor cDNA clone THAU2 similar to
Thaumatin-like protein, mRNA sequence
Length = 747
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1014 gtacctgcccgggcggccgc 1033
||||||||||||||||||||
Sbjct: 223 gtacctgcccgggcggccgc 204
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1014 gtacctgcccgggcggccgc 1033
||||||||||||||||||||
Sbjct: 192 gtacctgcccgggcggccgc 211
>gb|CF675675.1|CF675675 RUBISCO Subtractive cDNA library from sorghum infested by greenbug
aphids Sorghum bicolor cDNA clone RUBISCO similar to
Ribulose 1,5-biphosphate carboxylase, mRNA sequence
Length = 638
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1014 gtacctgcccgggcggccgc 1033
||||||||||||||||||||
Sbjct: 244 gtacctgcccgggcggccgc 225
>gb|DR831561.1|DR831561 MT14 Sorghum bicolor greenbug-responsive cDNA library Sorghum bicolor
cDNA 5', mRNA sequence
Length = 112
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1014 gtacctgcccgggcggccgc 1033
||||||||||||||||||||
Sbjct: 21 gtacctgcccgggcggccgc 2
>gb|DV162795.1|DV162795 P1-M15 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 282
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1014 gtacctgcccgggcggccgc 1033
||||||||||||||||||||
Sbjct: 51 gtacctgcccgggcggccgc 32
>gb|DV162819.1|DV162819 P5-B11 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 234
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1014 gtacctgcccgggcggccgc 1033
||||||||||||||||||||
Sbjct: 65 gtacctgcccgggcggccgc 84
>gb|DV162819.2|DV162819 P5-B11 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 172
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1014 gtacctgcccgggcggccgc 1033
||||||||||||||||||||
Sbjct: 2 gtacctgcccgggcggccgc 21
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 228,946
Number of Sequences: 832831
Number of extensions: 228946
Number of successful extensions: 60089
Number of sequences better than 0.5: 36
Number of HSP's better than 0.5 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60013
Number of HSP's gapped (non-prelim): 55
length of query: 1033
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1013
effective length of database: 474,703,049
effective search space: 480874188637
effective search space used: 480874188637
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)