BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2550809.2.1
(876 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG048069.1|BG048069 OV1_27_C05.g1_A002 Ovary 1 (OV1) Sor... 825 0.0
gb|CF760167.1|CF760167 DSAF1_56_C12.b1_A011 Drought-stresse... 664 0.0
gb|BG047742.1|BG047742 OV1_27_C05.b1_A002 Ovary 1 (OV1) Sor... 581 e-164
gb|CD208240.1|CD208240 HS1_32_E02.b1_A012 Heat-shocked seed... 571 e-161
gb|CF760108.1|CF760108 DSAF1_55_F01.b1_A011 Drought-stresse... 408 e-112
gb|CF759897.1|CF759897 DSAF1_52_F10.b1_A011 Drought-stresse... 392 e-107
gb|CW187979.1|CW187979 104_607_11172774_116_36724_021 Sorgh... 44 0.021
gb|CW319111.1|CW319111 104_811_11474310_148_35883_021 Sorgh... 44 0.021
gb|CW342359.1|CW342359 104_844_11486830_116_36180_093 Sorgh... 44 0.021
gb|CW084893.1|CW084893 104_428_10946074_114_32559_047 Sorgh... 42 0.085
gb|CW084894.1|CW084894 104_428_10946074_116_32562_047 Sorgh... 42 0.085
gb|CW163461.1|CW163461 104_571_11151473_148_36454_077 Sorgh... 42 0.085
gb|CW173670.1|CW173670 104_585_11156971_116_36554_074 Sorgh... 42 0.085
gb|CW295898.1|CW295898 104_777_11461196_116_35623_074 Sorgh... 42 0.085
gb|CW444442.1|CW444442 fsbb001f166a19f0 Sorghum methylation... 42 0.085
gb|BG050059.1|BG050059 FM1_66_A05.b1_A003 Floral-Induced Me... 42 0.085
gb|BG464310.1|BG464310 EM1_72_B10.b1_A002 Embryo 1 (EM1) So... 42 0.085
gb|CW023032.1|CW023032 104_162_10432200_5_30000 Sorghum met... 40 0.34
gb|CW221457.1|CW221457 104_656_11197918_116_37172_087 Sorgh... 40 0.34
gb|CW330321.1|CW330321 104_827_11480313_116_36011_043 Sorgh... 40 0.34
gb|CW330322.1|CW330322 104_827_11480313_148_36012_043 Sorgh... 40 0.34
gb|CW342360.1|CW342360 104_844_11486830_148_36179_093 Sorgh... 40 0.34
gb|BF705395.1|BF705395 RHIZ2_3_E03.b1_A003 Rhizome2 (RHIZ2)... 40 0.34
gb|BG273605.1|BG273605 OV2_27_G04.b1_A002 Ovary 2 (OV2) Sor... 40 0.34
gb|BG322491.1|BG322491 EM1_28_F06.b1_A002 Embryo 1 (EM1) So... 40 0.34
gb|CD208997.1|CD208997 HS1_45_B03.g1_A012 Heat-shocked seed... 40 0.34
gb|CD228453.1|CD228453 CCC1_7_H01.g1_A007 Callus culture/ce... 40 0.34
gb|CF488886.1|CF488886 POL1_52_G05.g1_A002 Pollen Sorghum b... 40 0.34
gb|CN129268.1|CN129268 RHOH1_34_A10.g1_A002 Acid- and alkal... 40 0.34
gb|CN135944.1|CN135944 OX1_39_H03.g1_A002 Oxidatively-stres... 40 0.34
>gb|BG048069.1|BG048069 OV1_27_C05.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 598
Score = 825 bits (416), Expect = 0.0
Identities = 549/592 (92%), Gaps = 1/592 (0%)
Strand = Plus / Minus
Query: 108 cagcatctagaaaacctaccatgtctcaggttctacaagaccaaaccactggtagcaaag 167
||||||||| || ||||||||||||||||| ||||| || ||||| ||||| |||||||
Sbjct: 591 cagcatctaaaagacctaccatgtctcaggcactaca-gagcaaactactggcagcaaag 533
Query: 168 tttaattctacacatcagatccaaccatccatccaccatctaacgagcaatgtacattag 227
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 532 tttaattccacacatcagatccacccatccatccaccatctaacgagcaatgtacattgg 473
Query: 228 aacctgtttgacctgtggaagcagttcacagcggcccaaggaagtcaccagcgatcgtag 287
|||| ||| ||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 472 aacccatttaacctgtggaagcagttcacagtggcccaaggaagtcaccagcaatcgtag 413
Query: 288 caaggagctggaattggcggtcagcctccatccagcggaaccctaggaccttgaagcgca 347
||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 412 caaggagctggaactggcggtcagcctccatccagcggaaccccagtaccttgaagcgca 353
Query: 348 cggcggtgtccttctccagcttcgagtggtcgttcatgaacatcgcattctccccaccta 407
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 352 cggcagtgtccttctccagctttgagtggtcgttcatgaacatcgcattctccccaccta 293
Query: 408 tgtacttgtaattactcatcgacttctcagccaggaagatgctctccacgggtccggatt 467
|||||||||| | |||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct: 292 tgtacttgtagtcgctcatcgatttctcagccaggaaaatgctctccacgggtccagatt 233
Query: 468 tgaggaacacgccatgcttgaggatcctgtccacgtgcccaaccatgacctctcccttca 527
| |||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 232 tcaggaacacaccatgcttgaggatcctgtccacgtggccaaccatgacctcacccttca 173
Query: 528 taggcttctgggtaatgcaagtaaatgaaactgggaacagaacatctccagttagctcac 587
|||||||| | || ||||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct: 172 taggcttcagtgtgatgcaggtaaatgagactgggaacagtacatctccagttagctcac 113
Query: 588 gcactttcccttcagatattgccttcagctgattaacagcaatgtagtagccatgctctt 647
||||||||||||||||||| |||||||||||| |||| |||| |||||||||||||||||
Sbjct: 112 gcactttcccttcagatatcgccttcagctgactaacggcaacgtagtagccatgctctt 53
Query: 648 tcgaagccctcctgtgtgtgacatcctccagaagacgcacaatgatagcctt 699
| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 52 tggaagccctcctgtttgtgacatcctccagaagacgcacaatgatagcctt 1
>gb|CF760167.1|CF760167 DSAF1_56_C12.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_56_C12_A011 5', mRNA sequence
Length = 566
Score = 664 bits (335), Expect = 0.0
Identities = 439/473 (92%), Gaps = 3/473 (0%)
Strand = Plus / Minus
Query: 364 cagcttcgagtggtcgttcatgaacatcgcattctccccacctatgtacttgtaattact 423
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 566 cagctttgagtggtcgttcatgaacatcgcattctccccacctatgtacttgtagtcgct 507
Query: 424 catcgacttctcagccaggaagatgctctccacgggtccggatttgaggaacacgccatg 483
|||||| ||||||||||||| ||||||||||||||||| ||| | |||||||| |||||
Sbjct: 506 catcgatctctcagccaggaaaatgctctccacgggtccagatctcaggaacacaccatg 447
Query: 484 cttgaggatcctgtccacgtgcccaaccatgacctctcccttcataggcttctgggtaat 543
||||||||||||||||||||| |||||||||||||| ||||||||||||||| | || ||
Sbjct: 446 cttgaggatcctgtccacgtggccaaccatgacctcacccttcataggcttcagtgtgat 387
Query: 544 gcaagtaaatgaaactgggaacagaacatctccagttagctcacgcactttcccttcaga 603
||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 386 gcaggtaaatgagactgggaacagtacatctccagttagctcacgcactttcccttcaga 327
Query: 604 tattgccttcagctgattaacagcaatgtagtagccatgctctttcgaagccctcctgtg 663
||| |||||||||||| |||| |||| |||||||||||||||||| |||||||||||||
Sbjct: 326 tatcgccttcagctgactaacggcaacgtagtagccatgctctttggaagccctcctgtt 267
Query: 664 tgtgacatcctccagaagacgcacaatgatagccttgcggagcaggaggcccttgcggtc 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tgtgacatcctccagaagacgcacaatgatagccttgcggagcaggaggcccttgcggtc 207
Query: 724 cagctggctaggtgagatcaacacattccatgacatctctgcctcaagaaaaaccatggc 783
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 206 cagctggctaggtgagatcagcacattccatgacatctctgcctcaagaaaaaccatggc 147
Query: 784 tgaatacctggtgagtgc---ttgccgacgaaaatgccgacgaaggcctcggc 833
||| |||||||||||||| | |||| |||| || |||||||||||||||||
Sbjct: 146 tgagtacctggtgagtgcccgtcgccggcgaagataccgacgaaggcctcggc 94
>gb|BG047742.1|BG047742 OV1_27_C05.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 496
Score = 581 bits (293), Expect = e-164
Identities = 385/415 (92%), Gaps = 3/415 (0%)
Strand = Plus / Minus
Query: 422 ctcatcgacttctcagccaggaagatgctctccacgggtccggatttgaggaacacgcca 481
|||||||| |||||||||||||| ||||||||||||||||| ||||| |||||||| |||
Sbjct: 487 ctcatcgatttctcagccaggaaaatgctctccacgggtccagatttcaggaacacacca 428
Query: 482 tgcttgaggatcctgtccacgtgcccaaccatgacctctcccttcataggcttctgggta 541
||||||||||||||||||||||| |||||||||||||| ||||||||||||||| | ||
Sbjct: 427 tgcttgaggatcctgtccacgtggccaaccatgacctcacccttcataggcttcagtgtg 368
Query: 542 atgcaagtaaatgaaactgggaacagaacatctccagttagctcacgcactttcccttca 601
||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 367 atgcaggtaaatgagactgggaacagtacatctccagttagctcacgcactttcccttca 308
Query: 602 gatattgccttcagctgattaacagcaatgtagtagccatgctctttcgaagccctcctg 661
||||| |||||||||||| |||| |||| |||||||||||||||||| ||||||||||||
Sbjct: 307 gatatcgccttcagctgactaacggcaacgtagtagccatgctctttggaagccctcctg 248
Query: 662 tgtgtgacatcctccagaagacgcacaatgatagccttgcggagcaggaggcccttgcgg 721
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tttgtgacatcctccagaagacgcacaatgatagccttgcggagcaggaggcccttgcgg 188
Query: 722 tccagctggctaggtgagatcaacacattccatgacatctctgcctcaagaaaaaccatg 781
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 187 tccagctggctaggtgagatcagcacattccatgacatctctgcctcaagaaaaaccatg 128
Query: 782 gctgaatacctggtgagtgc---ttgccgacgaaaatgccgacgaaggcctcggc 833
||| |||||||||||||| | |||| |||| || |||||||||||||||||
Sbjct: 127 gctttgtacctggtgagtgcccgtcgccggcgaagataccgacgaaggcctcggc 73
>gb|CD208240.1|CD208240 HS1_32_E02.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_32_E02_A012 3', mRNA sequence
Length = 478
Score = 571 bits (288), Expect = e-161
Identities = 436/482 (90%), Gaps = 5/482 (1%)
Strand = Plus / Minus
Query: 18 gcaagcatagaaaaggtacatccatg-acaacgcttgttcatcatacaggtacactgata 76
||||||||||||| || ||||||||| ||||| ||||||||| | |||||||||||
Sbjct: 478 gcaagcatagaaaggggacatccatggacaaccactgttcatcaaa---gtacactgata 422
Query: 77 cgttcaaaccagagctaaatatcactggcaacagcatctagaaaacctaccatgtctcag 136
| |||| |||||||| |||| |||| || | ||||||||| || ||||||||||||||||
Sbjct: 421 cattcagaccagagccaaatgtcaccggtatcagcatctaaaagacctaccatgtctcag 362
Query: 137 gttctacaagaccaaaccactggtagcaaagtttaattctacacatcagatccaaccatc 196
| ||||| || ||||| ||||| ||||||||||||||| |||||||||||||| |||||
Sbjct: 361 gcactaca-gagcaaactactggcagcaaagtttaattccacacatcagatccacccatc 303
Query: 197 catccaccatctaacgagcaatgtacattagaacctgtttgacctgtggaagcagttcac 256
||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||
Sbjct: 302 catccaccatctaacgagcaatgtacattggaacccatttaacctgtggaagcagttcac 243
Query: 257 agcggcccaaggaagtcaccagcgatcgtagcaaggagctggaattggcggtcagcctcc 316
|| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 242 agtggcccaaggaagtcaccagcaatcgtagcaaggagctggaactggcggtcagcctcc 183
Query: 317 atccagcggaaccctaggaccttgaagcgcacggcggtgtccttctccagcttcgagtgg 376
|||||||||||||| || ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 182 atccagcggaaccccagtaccttgaagcgcacggcagtgtccttctccagctttgagtgg 123
Query: 377 tcgttcatgaacatcgcattctccccacctatgtacttgtaattactcatcgacttctca 436
||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||
Sbjct: 122 tcgttcatgaacatcgcattctccccacctatgtacttgtagtcgctcatcgatttctca 63
Query: 437 gccaggaagatgctctccacgggtccggatttgaggaacacgccatgcttgaggatcctg 496
|||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct: 62 gccaggaaaatgctctccacgggtccagatttcaggaacacaccatgcttgaggatcctg 3
Query: 497 tc 498
||
Sbjct: 2 tc 1
>gb|CF760108.1|CF760108 DSAF1_55_F01.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_55_F01_A011 5', mRNA sequence
Length = 387
Score = 408 bits (206), Expect = e-112
Identities = 253/268 (94%), Gaps = 3/268 (1%)
Strand = Plus / Minus
Query: 569 acatctccagttagctcacgcactttcccttcagatattgccttcagctgattaacagca 628
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||
Sbjct: 384 acatctccagttagctcacgcactttcccttcagatatcgccttcagctgactaacggca 325
Query: 629 atgtagtagccatgctctttcgaagccctcctgtgtgtgacatcctccagaagacgcaca 688
| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 324 acgtagtagccatgctctttggaagccctcctgtttgtgacatcctccagaagacgcaca 265
Query: 689 atgatagccttgcggagcaggaggcccttgcggtccagctggctaggtgagatcaacaca 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 264 atgatagccttgcggagcaggaggcccttgcggtccagctggctaggtgagatcagcaca 205
Query: 749 ttccatgacatctctgcctcaagaaaaaccatggctgaatacctggtgagtgc---ttgc 805
|||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||
Sbjct: 204 ttccatgacatctctgcctcaagaaaaaccatggctgagtacctggtgagtgcccgtcgc 145
Query: 806 cgacgaaaatgccgacgaaggcctcggc 833
|| |||| || |||||||||||||||||
Sbjct: 144 cggcgaagataccgacgaaggcctcggc 117
>gb|CF759897.1|CF759897 DSAF1_52_F10.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_52_F10_A011 5', mRNA sequence
Length = 353
Score = 392 bits (198), Expect = e-107
Identities = 245/260 (94%), Gaps = 3/260 (1%)
Strand = Plus / Minus
Query: 577 agttagctcacgcactttcccttcagatattgccttcagctgattaacagcaatgtagta 636
|||||||||||||||||||||||||||||| |||||||||||| |||| |||| ||||||
Sbjct: 353 agttagctcacgcactttcccttcagatatcgccttcagctgactaacggcaacgtagta 294
Query: 637 gccatgctctttcgaagccctcctgtgtgtgacatcctccagaagacgcacaatgatagc 696
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 293 gccatgctctttggaagccctcctgtttgtgacatcctccagaagacgcacaatgatagc 234
Query: 697 cttgcggagcaggaggcccttgcggtccagctggctaggtgagatcaacacattccatga 756
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 233 cttgcggagcaggaggcccttgcggtccagctggctaggtgagatcagcacattccatga 174
Query: 757 catctctgcctcaagaaaaaccatggctgaatacctggtgagtgc---ttgccgacgaaa 813
|||||||||||||||||||||||||||||| |||||||||||||| | |||| ||||
Sbjct: 173 catctctgcctcaagaaaaaccatggctgagtacctggtgagtgcccgtcgccggcgaag 114
Query: 814 atgccgacgaaggcctcggc 833
|| |||||||||||||||||
Sbjct: 113 ataccgacgaaggcctcggc 94
>gb|CW187979.1|CW187979 104_607_11172774_116_36724_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11172774, DNA
sequence
Length = 669
Score = 44.1 bits (22), Expect = 0.021
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 819 gacgaaggcctcggcgcctggcgtag 844
||||||||||||||| ||||||||||
Sbjct: 209 gacgaaggcctcggcacctggcgtag 184
>gb|CW319111.1|CW319111 104_811_11474310_148_35883_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11474310, DNA
sequence
Length = 693
Score = 44.1 bits (22), Expect = 0.021
Identities = 45/52 (86%), Gaps = 3/52 (5%)
Strand = Plus / Plus
Query: 785 gaatacctggtgagtgc---ttgccgacgaaaatgccgacgaaggcctcggc 833
||||||||||||||||| | |||| |||| || |||||||||||||||||
Sbjct: 326 gaatacctggtgagtgcccgtcgccggcgaagataccgacgaaggcctcggc 377
>gb|CW342359.1|CW342359 104_844_11486830_116_36180_093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11486830, DNA
sequence
Length = 554
Score = 44.1 bits (22), Expect = 0.021
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 819 gacgaaggcctcggcgcctggcgtag 844
||||||||||||||| ||||||||||
Sbjct: 190 gacgaaggcctcggcacctggcgtag 165
>gb|CW084893.1|CW084893 104_428_10946074_114_32559_047 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10946074, DNA
sequence
Length = 660
Score = 42.1 bits (21), Expect = 0.085
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 847 gcgtagggcggcggcgccggcggtc 871
|||||||||||||||| ||||||||
Sbjct: 628 gcgtagggcggcggcggcggcggtc 604
>gb|CW084894.1|CW084894 104_428_10946074_116_32562_047 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10946074, DNA
sequence
Length = 724
Score = 42.1 bits (21), Expect = 0.085
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 847 gcgtagggcggcggcgccggcggtc 871
|||||||||||||||| ||||||||
Sbjct: 435 gcgtagggcggcggcggcggcggtc 459
>gb|CW163461.1|CW163461 104_571_11151473_148_36454_077 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11151473, DNA
sequence
Length = 689
Score = 42.1 bits (21), Expect = 0.085
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 817 ccgacgaaggcctcggcgcctggcg 841
||||||||||||||||| |||||||
Sbjct: 417 ccgacgaaggcctcggcacctggcg 441
>gb|CW173670.1|CW173670 104_585_11156971_116_36554_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11156971, DNA
sequence
Length = 683
Score = 42.1 bits (21), Expect = 0.085
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 817 ccgacgaaggcctcggcgcctggcg 841
||||||||||||||||| |||||||
Sbjct: 268 ccgacgaaggcctcggcacctggcg 292
>gb|CW295898.1|CW295898 104_777_11461196_116_35623_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11461196, DNA
sequence
Length = 715
Score = 42.1 bits (21), Expect = 0.085
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 820 acgaaggcctcggcgcctggcgtag 844
|||||||||||||| ||||||||||
Sbjct: 179 acgaaggcctcggcacctggcgtag 203
>gb|CW444442.1|CW444442 fsbb001f166a19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f166a19, DNA
sequence
Length = 645
Score = 42.1 bits (21), Expect = 0.085
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 849 gtagggcggcggcgccggcgg 869
|||||||||||||||||||||
Sbjct: 284 gtagggcggcggcgccggcgg 264
>gb|BG050059.1|BG050059 FM1_66_A05.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 243
Score = 42.1 bits (21), Expect = 0.085
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 847 gcgtagggcggcggcgccggc 867
|||||||||||||||||||||
Sbjct: 82 gcgtagggcggcggcgccggc 62
>gb|BG464310.1|BG464310 EM1_72_B10.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 538
Score = 42.1 bits (21), Expect = 0.085
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 847 gcgtagggcggcggcgccggcggtc 871
|||||||||||||||| ||||||||
Sbjct: 87 gcgtagggcggcggcggcggcggtc 63
>gb|CW023032.1|CW023032 104_162_10432200_5_30000 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10432200, DNA
sequence
Length = 530
Score = 40.1 bits (20), Expect = 0.34
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 177 acacatcagatccaaccatccatc 200
|||||||||||||| |||||||||
Sbjct: 475 acacatcagatccatccatccatc 498
>gb|CW221457.1|CW221457 104_656_11197918_116_37172_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11197918, DNA
sequence
Length = 694
Score = 40.1 bits (20), Expect = 0.34
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 177 acacatcagatccaaccatccatc 200
|||||||||||||| |||||||||
Sbjct: 274 acacatcagatccatccatccatc 297
>gb|CW330321.1|CW330321 104_827_11480313_116_36011_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480313, DNA
sequence
Length = 683
Score = 40.1 bits (20), Expect = 0.34
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 177 acacatcagatccaaccatccatc 200
|||||||||||||| |||||||||
Sbjct: 383 acacatcagatccatccatccatc 360
>gb|CW330322.1|CW330322 104_827_11480313_148_36012_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480313, DNA
sequence
Length = 711
Score = 40.1 bits (20), Expect = 0.34
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 177 acacatcagatccaaccatccatc 200
|||||||||||||| |||||||||
Sbjct: 621 acacatcagatccatccatccatc 644
>gb|CW342360.1|CW342360 104_844_11486830_148_36179_093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11486830, DNA
sequence
Length = 577
Score = 40.1 bits (20), Expect = 0.34
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 819 gacgaaggcctcggcgcctggcgt 842
||||||||||||||| ||||||||
Sbjct: 554 gacgaaggcctcggcacctggcgt 577
>gb|BF705395.1|BF705395 RHIZ2_3_E03.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 555
Score = 40.1 bits (20), Expect = 0.34
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 817 ccgacgaaggcctcggcgcctggcgtag 844
||||||||||||||| | ||||||||||
Sbjct: 99 ccgacgaaggcctcgtcacctggcgtag 72
>gb|BG273605.1|BG273605 OV2_27_G04.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 410
Score = 40.1 bits (20), Expect = 0.34
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 821 cgaaggcctcggcgcctggcgtag 844
||||||||||||| ||||||||||
Sbjct: 96 cgaaggcctcggcacctggcgtag 73
>gb|BG322491.1|BG322491 EM1_28_F06.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 575
Score = 40.1 bits (20), Expect = 0.34
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 821 cgaaggcctcggcgcctggcgtag 844
||||||||||||| ||||||||||
Sbjct: 89 cgaaggcctcggcacctggcgtag 66
>gb|CD208997.1|CD208997 HS1_45_B03.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_45_B03_A012 5', mRNA sequence
Length = 610
Score = 40.1 bits (20), Expect = 0.34
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 821 cgaaggcctcggcgcctggcgtag 844
||||||||||||| ||||||||||
Sbjct: 115 cgaaggcctcggcacctggcgtag 92
>gb|CD228453.1|CD228453 CCC1_7_H01.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_7_H01_A007 5', mRNA sequence
Length = 579
Score = 40.1 bits (20), Expect = 0.34
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 847 gcgtagggcggcggcgccggcggt 870
|||||||||||||||| |||||||
Sbjct: 60 gcgtagggcggcggcggcggcggt 37
>gb|CF488886.1|CF488886 POL1_52_G05.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_52_G05_A002 5', mRNA sequence
Length = 645
Score = 40.1 bits (20), Expect = 0.34
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 846 cgcgtagggcggcggcgccggcgg 869
||||||||||||||||| ||||||
Sbjct: 69 cgcgtagggcggcggcggcggcgg 46
>gb|CN129268.1|CN129268 RHOH1_34_A10.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_34_A10_A002 5', mRNA sequence
Length = 669
Score = 40.1 bits (20), Expect = 0.34
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 821 cgaaggcctcggcgcctggcgtag 844
||||||||||||| ||||||||||
Sbjct: 110 cgaaggcctcggcacctggcgtag 87
>gb|CN135944.1|CN135944 OX1_39_H03.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_39_H03_A002 5', mRNA sequence
Length = 843
Score = 40.1 bits (20), Expect = 0.34
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 846 cgcgtagggcggcggcgccggcgg 869
||||||||||||||||| ||||||
Sbjct: 72 cgcgtagggcggcggcggcggcgg 49
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 258,118
Number of Sequences: 832831
Number of extensions: 258118
Number of successful extensions: 80431
Number of sequences better than 0.5: 30
Number of HSP's better than 0.5 without gapping: 29
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 80373
Number of HSP's gapped (non-prelim): 51
length of query: 876
length of database: 491,359,669
effective HSP length: 20
effective length of query: 856
effective length of database: 474,703,049
effective search space: 406345809944
effective search space used: 406345809944
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)